@vitessce/statistical-plots 3.8.3 → 3.8.5

package/dist/{deflate-7ohytk11.js → deflate-DhdKi2Ho.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { B as BaseDecoder } from "./index-Cbe4c7In.js";
+import { B as BaseDecoder } from "./index-Bww8vUPc.js";
 class DeflateDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return inflate_1(new Uint8Array(buffer)).buffer;

package/dist/{index-Cbe4c7In.js → index-Bww8vUPc.js}

@@ -1201,6 +1201,7 @@ const COMPONENT_COORDINATION_TYPES = {
     CoordinationType$1.FEATURE_SELECTION,
     CoordinationType$1.FEATURE_VALUE_COLORMAP,
     CoordinationType$1.FEATURE_VALUE_COLORMAP_RANGE,
+    CoordinationType$1.FEATURE_AGGREGATION_STRATEGY,
     // TODO: CoordinationType.FEATURE_COLOR_ENCODING,
     // TODO: CoordinationType.ADDITIONAL_FEATURE_SETS,
     CoordinationType$1.TOOLTIPS_VISIBLE,
@@ -11237,7 +11238,10 @@ z.object({
   obsSets: obsSetsSpatialdataSchema,
   obsEmbedding: obsEmbeddingSpatialdataSchemaConvenience,
   // TODO: obsLabels
-  // TODO: featureLabels
+  featureLabels: z.union([
+    annDataFeatureLabels,
+    z.array(annDataConvenienceFeatureLabelsItem)
+  ]),
   // TODO: allow specifying tablePath and region at the top-level here.
   coordinateSystem: z.string().optional().describe("The name of a coordinate transformation output used to transform all elements which lack a per-element coordinateSystem property.")
 }).partial();
@@ -178758,22 +178762,22 @@ function addDecoder(cases2, importFn) {
   }
   cases2.forEach((c2) => registry$1.set(c2, importFn));
 }
-addDecoder([void 0, 1], () => import("./raw-B1EQg_SA.js").then((m2) => m2.default));
-addDecoder(5, () => import("./lzw-Eb5O3C7F.js").then((m2) => m2.default));
+addDecoder([void 0, 1], () => import("./raw-BE-hWhIt.js").then((m2) => m2.default));
+addDecoder(5, () => import("./lzw-CtdR_QD0.js").then((m2) => m2.default));
 addDecoder(6, () => {
   throw new Error("old style JPEG compression is not supported.");
 });
-addDecoder(7, () => import("./jpeg-hmwNBzu7.js").then((m2) => m2.default));
-addDecoder([8, 32946], () => import("./deflate-7ohytk11.js").then((m2) => m2.default));
-addDecoder(32773, () => import("./packbits-TfpJF6VX.js").then((m2) => m2.default));
+addDecoder(7, () => import("./jpeg-DaQlT1PL.js").then((m2) => m2.default));
+addDecoder([8, 32946], () => import("./deflate-DhdKi2Ho.js").then((m2) => m2.default));
+addDecoder(32773, () => import("./packbits-IHApx9PX.js").then((m2) => m2.default));
 addDecoder(
   34887,
-  () => import("./lerc-CyTLEcX2.js").then(async (m2) => {
+  () => import("./lerc-CEyFtJYR.js").then(async (m2) => {
     await m2.zstd.init();
     return m2;
   }).then((m2) => m2.default)
 );
-addDecoder(50001, () => import("./webimage-DkHQ713h.js").then((m2) => m2.default));
+addDecoder(50001, () => import("./webimage-Co4sRMMx.js").then((m2) => m2.default));
 function decodeRowAcc(row, stride) {
   let length2 = row.length - stride;
   let offset2 = 0;
@@ -195741,6 +195745,7 @@ accessor$1(() => 0, [], "zero");
 accessor$1(() => 1, [], "one");
 accessor$1(() => true, [], "true");
 accessor$1(() => false, [], "false");
+/* @__PURE__ */ new Set([...Object.getOwnPropertyNames(Object.prototype).filter((name2) => typeof Object.prototype[name2] === "function"), "__proto__"]);
 var isArray$1 = Array.isArray;
 function peek$2(array2) {
   return array2[array2.length - 1];
@@ -199050,8 +199055,7 @@ function splitAccessPath(p) {
   for (i2 = j = 0; j < n2; ++j) {
     c2 = p[j];
     if (c2 === "\\") {
-      s2 += p.substring(i2, j);
-      s2 += p.substring(++j, ++j);
+      s2 += p.substring(i2, j++);
       i2 = j;
     } else if (c2 === q) {
       push2();
@@ -199109,7 +199113,8 @@ const Error$1 = 1;
 const Warn = 2;
 const Info = 3;
 const Debug = 4;
-function logger(_, method2, handler = log$1$1) {
+function logger(_, method2) {
+  let handler = arguments.length > 2 && arguments[2] !== void 0 ? arguments[2] : log$1$1;
   let level = _ || None$2;
   return {
     level(_2) {
@@ -199143,7 +199148,10 @@ function isObject(_) {
   return _ === Object(_);
 }
 const isLegalKey = (key2) => key2 !== "__proto__";
-function mergeConfig(...configs) {
+function mergeConfig() {
+  for (var _len = arguments.length, configs = new Array(_len), _key = 0; _key < _len; _key++) {
+    configs[_key] = arguments[_key];
+  }
   return configs.reduce((out, source2) => {
     for (const key2 in source2) {
       if (key2 === "signals") {
@@ -199381,9 +199389,8 @@ function extentIndex(array2, f2) {
   }
   return [u2, v];
 }
-const hop = Object.prototype.hasOwnProperty;
 function has$1(object2, property2) {
-  return hop.call(object2, property2);
+  return Object.hasOwn(object2, property2);
 }
 const NULL = {};
 function fastmap(input) {
@@ -252537,6 +252544,7 @@ function FeatureStatsTable(props) {
     sampleSetSelection,
     data: data2,
     setFeatureSelection,
+    setFeatureAggregationStrategy,
     featurePointSignificanceThreshold,
     featurePointFoldChangeThreshold
   } = props;
@@ -252599,6 +252607,7 @@ function FeatureStatsTable(props) {
   }, [filteredData, obsSetsColumnNameMappingReversed]);
   const onSelectionModelChange = useCallback((rowIds) => {
     const featureIds = Array.from(rowIds.ids).map((rowId) => rowId.split(ROW_ID_DELIMITER)[0]);
+    setFeatureAggregationStrategy(null);
     setFeatureSelection(featureIds);
   }, []);
   const rowSelectionModel = useMemo(() => ({ ids: /* @__PURE__ */ new Set([]), type: "include" }), []);
@@ -252646,6 +252655,7 @@ function FeatureStatsTableSubscriber(props) {
     featurePointFoldChangeThreshold,
     featureValueTransform,
     featureValueTransformCoefficient,
+    featureAggregationStrategy,
     gatingFeatureSelectionX,
     gatingFeatureSelectionY,
     featureSelection,
@@ -252662,6 +252672,7 @@ function FeatureStatsTableSubscriber(props) {
     setFeaturePointFoldChangeThreshold,
     setFeatureValueTransform,
     setFeatureValueTransformCoefficient,
+    setFeatureAggregationStrategy,
     setGatingFeatureSelectionX,
     setGatingFeatureSelectionY,
     setFeatureSelection,
@@ -252736,6 +252747,7 @@ function FeatureStatsTableSubscriber(props) {
         data: featureStats,
         featureSelection,
         setFeatureSelection,
+        setFeatureAggregationStrategy,
         featurePointSignificanceThreshold,
         featurePointFoldChangeThreshold
       }

package/dist/index.js

@@ -1,4 +1,4 @@
-import { b, f, C, e, a, i, D, h, E, F, c, d, T, V } from "./index-Cbe4c7In.js";
+import { b, f, C, e, a, i, D, h, E, F, c, d, T, V } from "./index-Bww8vUPc.js";
 export {
   b as CellSetCompositionBarPlotSubscriber,
   f as CellSetExpressionPlot,

package/dist/{jpeg-hmwNBzu7.js → jpeg-DaQlT1PL.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-Cbe4c7In.js";
+import { B as BaseDecoder } from "./index-Bww8vUPc.js";
 const dctZigZag = new Int32Array([
   0,
   1,

package/dist/{lerc-CyTLEcX2.js → lerc-CEyFtJYR.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-Cbe4c7In.js";
+import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-Bww8vUPc.js";
 const LercParameters = {
   AddCompression: 1
 };

package/dist/{lzw-Eb5O3C7F.js → lzw-CtdR_QD0.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-Cbe4c7In.js";
+import { B as BaseDecoder } from "./index-Bww8vUPc.js";
 const MIN_BITS = 9;
 const CLEAR_CODE = 256;
 const EOI_CODE = 257;

package/dist/{packbits-TfpJF6VX.js → packbits-IHApx9PX.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-Cbe4c7In.js";
+import { B as BaseDecoder } from "./index-Bww8vUPc.js";
 class PackbitsDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     const dataView = new DataView(buffer);

package/dist/{raw-B1EQg_SA.js → raw-BE-hWhIt.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-Cbe4c7In.js";
+import { B as BaseDecoder } from "./index-Bww8vUPc.js";
 class RawDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return buffer;

package/dist/{webimage-DkHQ713h.js → webimage-Co4sRMMx.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-Cbe4c7In.js";
+import { B as BaseDecoder } from "./index-Bww8vUPc.js";
 class WebImageDecoder extends BaseDecoder {
   constructor() {
     super();

package/dist-tsc/FeatureStatsTable.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"FeatureStatsTable.d.ts","sourceRoot":"","sources":["../src/FeatureStatsTable.js"],"names":[],"mappings":"AAoBA,mEAyGC"}
+{"version":3,"file":"FeatureStatsTable.d.ts","sourceRoot":"","sources":["../src/FeatureStatsTable.js"],"names":[],"mappings":"AAoBA,mEA6GC"}

package/dist-tsc/FeatureStatsTable.js

@@ -17,7 +17,7 @@ const initialState = {
 };
 const pageSizeOptions = [10];
 export default function FeatureStatsTable(props) {
-    const { obsType, featureType, obsSetsColumnNameMappingReversed, sampleSetsColumnNameMappingReversed, sampleSetSelection, data, setFeatureSelection, featurePointSignificanceThreshold, featurePointFoldChangeThreshold, } = props;
+    const { obsType, featureType, obsSetsColumnNameMappingReversed, sampleSetsColumnNameMappingReversed, sampleSetSelection, data, setFeatureSelection, setFeatureAggregationStrategy, featurePointSignificanceThreshold, featurePointFoldChangeThreshold, } = props;
     const [
     // eslint-disable-next-line no-unused-vars
     computedData, filteredData,] = useFilteredVolcanoData({
@@ -78,6 +78,8 @@ export default function FeatureStatsTable(props) {
     }, [filteredData, obsSetsColumnNameMappingReversed]);
     const onSelectionModelChange = useCallback((rowIds) => {
         const featureIds = Array.from(rowIds.ids).map(rowId => rowId.split(ROW_ID_DELIMITER)[0]);
+        // We want to clear this value upon selection, in case it was previously set.
+        setFeatureAggregationStrategy(null);
         setFeatureSelection(featureIds);
     }, []);
     const rowSelectionModel = useMemo(() => ({ ids: new Set([]), type: 'include' }), []);

package/dist-tsc/FeatureStatsTableSubscriber.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"FeatureStatsTableSubscriber.d.ts","sourceRoot":"","sources":["../src/FeatureStatsTableSubscriber.js"],"names":[],"mappings":"AAqBA,qEAwHC"}
+{"version":3,"file":"FeatureStatsTableSubscriber.d.ts","sourceRoot":"","sources":["../src/FeatureStatsTableSubscriber.js"],"names":[],"mappings":"AAqBA,qEA2HC"}

package/dist-tsc/FeatureStatsTableSubscriber.js

@@ -10,7 +10,7 @@ export function FeatureStatsTableSubscriber(props) {
     const loaders = useLoaders();
     const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
     // Get "props" from the coordination space.
-    const [{ dataset, obsType, sampleType, featureType, featureValueType, obsFilter: cellFilter, obsHighlight: cellHighlight, obsSetSelection, obsSetColor, obsColorEncoding: cellColorEncoding, additionalObsSets: additionalCellSets, featurePointSignificanceThreshold, featurePointFoldChangeThreshold, featureValueTransform, featureValueTransformCoefficient, gatingFeatureSelectionX, gatingFeatureSelectionY, featureSelection, sampleSetSelection, sampleSetColor, }, { setObsFilter: setCellFilter, setObsSetSelection, setObsHighlight: setCellHighlight, setObsSetColor: setCellSetColor, setObsColorEncoding: setCellColorEncoding, setAdditionalObsSets: setAdditionalCellSets, setFeaturePointSignificanceThreshold, setFeaturePointFoldChangeThreshold, setFeatureValueTransform, setFeatureValueTransformCoefficient, setGatingFeatureSelectionX, setGatingFeatureSelectionY, setFeatureSelection, setSampleSetSelection, setSampleSetColor, }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType.FEATURE_STATS_TABLE], coordinationScopes);
+    const [{ dataset, obsType, sampleType, featureType, featureValueType, obsFilter: cellFilter, obsHighlight: cellHighlight, obsSetSelection, obsSetColor, obsColorEncoding: cellColorEncoding, additionalObsSets: additionalCellSets, featurePointSignificanceThreshold, featurePointFoldChangeThreshold, featureValueTransform, featureValueTransformCoefficient, featureAggregationStrategy, gatingFeatureSelectionX, gatingFeatureSelectionY, featureSelection, sampleSetSelection, sampleSetColor, }, { setObsFilter: setCellFilter, setObsSetSelection, setObsHighlight: setCellHighlight, setObsSetColor: setCellSetColor, setObsColorEncoding: setCellColorEncoding, setAdditionalObsSets: setAdditionalCellSets, setFeaturePointSignificanceThreshold, setFeaturePointFoldChangeThreshold, setFeatureValueTransform, setFeatureValueTransformCoefficient, setFeatureAggregationStrategy, setGatingFeatureSelectionX, setGatingFeatureSelectionY, setFeatureSelection, setSampleSetSelection, setSampleSetColor, }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType.FEATURE_STATS_TABLE], coordinationScopes);
     const obsSetsLoader = useMatchingLoader(loaders, dataset, DataType.OBS_SETS, { obsType });
     const sampleSetsLoader = useMatchingLoader(loaders, dataset, DataType.SAMPLE_SETS, { sampleType });
     const obsSetsColumnNameMapping = useColumnNameMapping(obsSetsLoader);
@@ -28,5 +28,5 @@ export function FeatureStatsTableSubscriber(props) {
     const isReady = useReady([
         featureStatsStatus,
     ]);
-    return (_jsx(TitleInfo, { title: title, removeGridComponent: removeGridComponent, theme: theme, isReady: isReady, helpText: helpText, errors: errors, withPadding: false, children: featureStats ? (_jsx(FeatureStatsTable, { theme: theme, obsType: obsType, featureType: featureType, obsSetsColumnNameMapping: obsSetsColumnNameMapping, obsSetsColumnNameMappingReversed: obsSetsColumnNameMappingReversed, sampleSetsColumnNameMapping: sampleSetsColumnNameMapping, sampleSetsColumnNameMappingReversed: sampleSetsColumnNameMappingReversed, sampleSetSelection: sampleSetSelection, obsSetSelection: obsSetSelection, obsSetColor: obsSetColor, sampleSetColor: sampleSetColor, data: featureStats, featureSelection: featureSelection, setFeatureSelection: setFeatureSelection, featurePointSignificanceThreshold: featurePointSignificanceThreshold, featurePointFoldChangeThreshold: featurePointFoldChangeThreshold })) : (_jsxs("p", { style: { padding: '12px' }, children: ["Select at least one ", obsType, " set."] })) }));
+    return (_jsx(TitleInfo, { title: title, removeGridComponent: removeGridComponent, theme: theme, isReady: isReady, helpText: helpText, errors: errors, withPadding: false, children: featureStats ? (_jsx(FeatureStatsTable, { theme: theme, obsType: obsType, featureType: featureType, obsSetsColumnNameMapping: obsSetsColumnNameMapping, obsSetsColumnNameMappingReversed: obsSetsColumnNameMappingReversed, sampleSetsColumnNameMapping: sampleSetsColumnNameMapping, sampleSetsColumnNameMappingReversed: sampleSetsColumnNameMappingReversed, sampleSetSelection: sampleSetSelection, obsSetSelection: obsSetSelection, obsSetColor: obsSetColor, sampleSetColor: sampleSetColor, data: featureStats, featureSelection: featureSelection, setFeatureSelection: setFeatureSelection, setFeatureAggregationStrategy: setFeatureAggregationStrategy, featurePointSignificanceThreshold: featurePointSignificanceThreshold, featurePointFoldChangeThreshold: featurePointFoldChangeThreshold })) : (_jsxs("p", { style: { padding: '12px' }, children: ["Select at least one ", obsType, " set."] })) }));
 }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/statistical-plots",
-  "version": "3.8.3",
+  "version": "3.8.5",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -28,13 +28,13 @@
     "react-aria": "^3.28.0",
     "internmap": "^2.0.3",
     "uuid": "^9.0.0",
-    "@vitessce/styles": "3.8.3",
-    "@vitessce/constants-internal": "3.8.3",
-    "@vitessce/sets-utils": "3.8.3",
-    "@vitessce/utils": "3.8.3",
-    "@vitessce/vega": "3.8.3",
-    "@vitessce/vit-s": "3.8.3",
-    "@vitessce/gl": "3.8.3"
+    "@vitessce/styles": "3.8.5",
+    "@vitessce/constants-internal": "3.8.5",
+    "@vitessce/sets-utils": "3.8.5",
+    "@vitessce/utils": "3.8.5",
+    "@vitessce/vega": "3.8.5",
+    "@vitessce/vit-s": "3.8.5",
+    "@vitessce/gl": "3.8.5"
   },
   "devDependencies": {
     "react": "18.3.1",

package/src/FeatureStatsTable.js

@@ -27,6 +27,7 @@ export default function FeatureStatsTable(props) {
     sampleSetSelection,
     data,
     setFeatureSelection,
+    setFeatureAggregationStrategy,
     featurePointSignificanceThreshold,
     featurePointFoldChangeThreshold,
   } = props;
@@ -99,6 +100,9 @@ export default function FeatureStatsTable(props) {
 
   const onSelectionModelChange = useCallback((rowIds) => {
     const featureIds = Array.from(rowIds.ids).map(rowId => rowId.split(ROW_ID_DELIMITER)[0]);
+    // We want to clear this value upon selection, in case it was previously set.
+    setFeatureAggregationStrategy(null);
+
     setFeatureSelection(featureIds);
   }, []);
 

package/src/FeatureStatsTableSubscriber.js

@@ -48,6 +48,7 @@ export function FeatureStatsTableSubscriber(props) {
     featurePointFoldChangeThreshold,
     featureValueTransform,
     featureValueTransformCoefficient,
+    featureAggregationStrategy,
     gatingFeatureSelectionX,
     gatingFeatureSelectionY,
     featureSelection,
@@ -64,6 +65,7 @@ export function FeatureStatsTableSubscriber(props) {
     setFeaturePointFoldChangeThreshold,
     setFeatureValueTransform,
     setFeatureValueTransformCoefficient,
+    setFeatureAggregationStrategy,
     setGatingFeatureSelectionX,
     setGatingFeatureSelectionY,
     setFeatureSelection,
@@ -131,6 +133,7 @@ export function FeatureStatsTableSubscriber(props) {
           data={featureStats}
           featureSelection={featureSelection}
           setFeatureSelection={setFeatureSelection}
+          setFeatureAggregationStrategy={setFeatureAggregationStrategy}
           featurePointSignificanceThreshold={featurePointSignificanceThreshold}
           featurePointFoldChangeThreshold={featurePointFoldChangeThreshold}
         />