@vitessce/statistical-plots 3.8.13 → 3.9.1

package/dist/{deflate-BuiHI4Et.js → deflate-SjqVcI9s.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { B as BaseDecoder } from "./index-BmYvVUY8.js";
+import { B as BaseDecoder } from "./index-DQNZPvU7.js";
 class DeflateDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return inflate_1(new Uint8Array(buffer)).buffer;

package/dist/{index-BmYvVUY8.js → index-DQNZPvU7.js}

@@ -279,6 +279,7 @@ const CoordinationType$1 = {
   OBS_SET_HIGHLIGHT: "obsSetHighlight",
   OBS_SET_EXPANSION: "obsSetExpansion",
   OBS_SET_COLOR: "obsSetColor",
+  FEATURE_COLOR: "featureColor",
   FEATURE_HIGHLIGHT: "featureHighlight",
   FEATURE_SELECTION: "featureSelection",
   FEATURE_SET_SELECTION: "featureSetSelection",
@@ -865,6 +866,8 @@ const COMPONENT_COORDINATION_TYPES = {
     CoordinationType$1.OBS_SET_FILTER,
     CoordinationType$1.OBS_SET_HIGHLIGHT,
     CoordinationType$1.OBS_SET_COLOR,
+    CoordinationType$1.FEATURE_COLOR,
+    CoordinationType$1.FEATURE_FILTER_MODE,
     CoordinationType$1.FEATURE_HIGHLIGHT,
     CoordinationType$1.FEATURE_SELECTION,
     CoordinationType$1.FEATURE_VALUE_COLORMAP,
@@ -1079,6 +1082,8 @@ const COMPONENT_COORDINATION_TYPES = {
     CoordinationType$1.SPATIAL_SPOT_STROKE_WIDTH,
     CoordinationType$1.SPATIAL_LAYER_COLOR,
     CoordinationType$1.OBS_COLOR_ENCODING,
+    CoordinationType$1.FEATURE_COLOR,
+    CoordinationType$1.FEATURE_FILTER_MODE,
     CoordinationType$1.FEATURE_VALUE_COLORMAP,
     CoordinationType$1.FEATURE_VALUE_COLORMAP_RANGE,
     CoordinationType$1.FEATURE_SELECTION,
@@ -11474,7 +11479,9 @@ const obsSegmentationsSpatialdataSchema = z.object({
 const obsPointsSpatialdataSchema = z.object({
   path: z.string().describe("The path to the point data."),
   tablePath: z.string().optional().describe("The path to a table which annotates the points. If available but not specified, the spot identifiers may not be aligned with associated tabular data as expected."),
-  coordinateSystem: z.string().optional().describe('The name of a coordinate transformation output used to transform the image. If not provided, the "global" coordinate system is assumed.')
+  coordinateSystem: z.string().optional().describe('The name of a coordinate transformation output used to transform the image. If not provided, the "global" coordinate system is assumed.'),
+  featureIndexColumn: z.string().optional().describe("The name of the column in the table which contains the feature (e.g., gene) indices associated with each point (aligned with the table var.index dataframe column)."),
+  mortonCodeColumn: z.string().optional().describe('The name of the column in the table which contains the Morton codes for each point, used for efficient spatial querying. If not provided, Vitessce will assume the default column name "morton_code_2d".')
 });
 z.object({
   path: z.string(),
@@ -38725,6 +38732,90 @@ ListItemText.propTypes = {
    */
   sx: _pt.oneOfType([_pt.arrayOf(_pt.oneOfType([_pt.func, _pt.object, _pt.bool])), _pt.func, _pt.object])
 };
+function getListItemIconUtilityClass(slot) {
+  return generateUtilityClass("MuiListItemIcon", slot);
+}
+const listItemIconClasses = generateUtilityClasses("MuiListItemIcon", ["root", "alignItemsFlexStart"]);
+const useUtilityClasses$10 = (ownerState) => {
+  const {
+    alignItems,
+    classes: classes2
+  } = ownerState;
+  const slots = {
+    root: ["root", alignItems === "flex-start" && "alignItemsFlexStart"]
+  };
+  return composeClasses(slots, getListItemIconUtilityClass, classes2);
+};
+const ListItemIconRoot = styled("div", {
+  name: "MuiListItemIcon",
+  slot: "Root",
+  overridesResolver: (props, styles2) => {
+    const {
+      ownerState
+    } = props;
+    return [styles2.root, ownerState.alignItems === "flex-start" && styles2.alignItemsFlexStart];
+  }
+})(memoTheme(({
+  theme
+}) => ({
+  minWidth: 56,
+  color: (theme.vars || theme).palette.action.active,
+  flexShrink: 0,
+  display: "inline-flex",
+  variants: [{
+    props: {
+      alignItems: "flex-start"
+    },
+    style: {
+      marginTop: 8
+    }
+  }]
+})));
+const ListItemIcon = /* @__PURE__ */ React.forwardRef(function ListItemIcon2(inProps, ref2) {
+  const props = useDefaultProps({
+    props: inProps,
+    name: "MuiListItemIcon"
+  });
+  const {
+    className,
+    ...other
+  } = props;
+  const context2 = React.useContext(ListContext);
+  const ownerState = {
+    ...props,
+    alignItems: context2.alignItems
+  };
+  const classes2 = useUtilityClasses$10(ownerState);
+  return /* @__PURE__ */ jsxRuntimeExports.jsx(ListItemIconRoot, {
+    className: clsx(classes2.root, className),
+    ownerState,
+    ref: ref2,
+    ...other
+  });
+});
+ListItemIcon.propTypes = {
+  // ┌────────────────────────────── Warning ──────────────────────────────┐
+  // │ These PropTypes are generated from the TypeScript type definitions. │
+  // │    To update them, edit the d.ts file and run `pnpm proptypes`.     │
+  // └─────────────────────────────────────────────────────────────────────┘
+  /**
+   * The content of the component, normally `Icon`, `SvgIcon`,
+   * or a `@mui/icons-material` SVG icon element.
+   */
+  children: _pt.node,
+  /**
+   * Override or extend the styles applied to the component.
+   */
+  classes: _pt.object,
+  /**
+   * @ignore
+   */
+  className: _pt.string,
+  /**
+   * The system prop that allows defining system overrides as well as additional CSS styles.
+   */
+  sx: _pt.oneOfType([_pt.arrayOf(_pt.oneOfType([_pt.func, _pt.object, _pt.bool])), _pt.func, _pt.object])
+};
 function getScrollbarSize(win = window) {
   const documentWidth = win.document.documentElement.clientWidth;
   return win.innerWidth - documentWidth;
@@ -38976,7 +39067,7 @@ function getDividerUtilityClass(slot) {
   return generateUtilityClass("MuiDivider", slot);
 }
 const dividerClasses = generateUtilityClasses("MuiDivider", ["root", "absolute", "fullWidth", "inset", "middle", "flexItem", "light", "vertical", "withChildren", "withChildrenVertical", "textAlignRight", "textAlignLeft", "wrapper", "wrapperVertical"]);
-const useUtilityClasses$10 = (ownerState) => {
+const useUtilityClasses$$ = (ownerState) => {
   const {
     absolute,
     children: children2,
@@ -39190,7 +39281,7 @@ const Divider$1 = /* @__PURE__ */ React.forwardRef(function Divider2(inProps, re
     textAlign: textAlign2,
     variant
   };
-  const classes2 = useUtilityClasses$10(ownerState);
+  const classes2 = useUtilityClasses$$(ownerState);
   return /* @__PURE__ */ jsxRuntimeExports.jsx(DividerRoot, {
     as: component,
     className: clsx(classes2.root, className),
@@ -39272,90 +39363,6 @@ Divider$1.propTypes = {
    */
   variant: _pt.oneOfType([_pt.oneOf(["fullWidth", "inset", "middle"]), _pt.string])
 };
-function getListItemIconUtilityClass(slot) {
-  return generateUtilityClass("MuiListItemIcon", slot);
-}
-const listItemIconClasses = generateUtilityClasses("MuiListItemIcon", ["root", "alignItemsFlexStart"]);
-const useUtilityClasses$$ = (ownerState) => {
-  const {
-    alignItems,
-    classes: classes2
-  } = ownerState;
-  const slots = {
-    root: ["root", alignItems === "flex-start" && "alignItemsFlexStart"]
-  };
-  return composeClasses(slots, getListItemIconUtilityClass, classes2);
-};
-const ListItemIconRoot = styled("div", {
-  name: "MuiListItemIcon",
-  slot: "Root",
-  overridesResolver: (props, styles2) => {
-    const {
-      ownerState
-    } = props;
-    return [styles2.root, ownerState.alignItems === "flex-start" && styles2.alignItemsFlexStart];
-  }
-})(memoTheme(({
-  theme
-}) => ({
-  minWidth: 56,
-  color: (theme.vars || theme).palette.action.active,
-  flexShrink: 0,
-  display: "inline-flex",
-  variants: [{
-    props: {
-      alignItems: "flex-start"
-    },
-    style: {
-      marginTop: 8
-    }
-  }]
-})));
-const ListItemIcon = /* @__PURE__ */ React.forwardRef(function ListItemIcon2(inProps, ref2) {
-  const props = useDefaultProps({
-    props: inProps,
-    name: "MuiListItemIcon"
-  });
-  const {
-    className,
-    ...other
-  } = props;
-  const context2 = React.useContext(ListContext);
-  const ownerState = {
-    ...props,
-    alignItems: context2.alignItems
-  };
-  const classes2 = useUtilityClasses$$(ownerState);
-  return /* @__PURE__ */ jsxRuntimeExports.jsx(ListItemIconRoot, {
-    className: clsx(classes2.root, className),
-    ownerState,
-    ref: ref2,
-    ...other
-  });
-});
-ListItemIcon.propTypes = {
-  // ┌────────────────────────────── Warning ──────────────────────────────┐
-  // │ These PropTypes are generated from the TypeScript type definitions. │
-  // │    To update them, edit the d.ts file and run `pnpm proptypes`.     │
-  // └─────────────────────────────────────────────────────────────────────┘
-  /**
-   * The content of the component, normally `Icon`, `SvgIcon`,
-   * or a `@mui/icons-material` SVG icon element.
-   */
-  children: _pt.node,
-  /**
-   * Override or extend the styles applied to the component.
-   */
-  classes: _pt.object,
-  /**
-   * @ignore
-   */
-  className: _pt.string,
-  /**
-   * The system prop that allows defining system overrides as well as additional CSS styles.
-   */
-  sx: _pt.oneOfType([_pt.arrayOf(_pt.oneOfType([_pt.func, _pt.object, _pt.bool])), _pt.func, _pt.object])
-};
 function getMenuItemUtilityClass(slot) {
   return generateUtilityClass("MuiMenuItem", slot);
 }
@@ -179150,22 +179157,22 @@ function addDecoder(cases2, importFn) {
   }
   cases2.forEach((c2) => registry$1.set(c2, importFn));
 }
-addDecoder([void 0, 1], () => import("./raw-B56udEa5.js").then((m2) => m2.default));
-addDecoder(5, () => import("./lzw-ahoob13H.js").then((m2) => m2.default));
+addDecoder([void 0, 1], () => import("./raw-D9gtw8Jf.js").then((m2) => m2.default));
+addDecoder(5, () => import("./lzw-BtWmo4l4.js").then((m2) => m2.default));
 addDecoder(6, () => {
   throw new Error("old style JPEG compression is not supported.");
 });
-addDecoder(7, () => import("./jpeg-CnRvmB8H.js").then((m2) => m2.default));
-addDecoder([8, 32946], () => import("./deflate-BuiHI4Et.js").then((m2) => m2.default));
-addDecoder(32773, () => import("./packbits-Ckd3nQz8.js").then((m2) => m2.default));
+addDecoder(7, () => import("./jpeg-6eOh2nfm.js").then((m2) => m2.default));
+addDecoder([8, 32946], () => import("./deflate-SjqVcI9s.js").then((m2) => m2.default));
+addDecoder(32773, () => import("./packbits-tosASsXM.js").then((m2) => m2.default));
 addDecoder(
   34887,
-  () => import("./lerc-DdM66WTL.js").then(async (m2) => {
+  () => import("./lerc-DqyheC4U.js").then(async (m2) => {
     await m2.zstd.init();
     return m2;
   }).then((m2) => m2.default)
 );
-addDecoder(50001, () => import("./webimage-CKIhq6Gi.js").then((m2) => m2.default));
+addDecoder(50001, () => import("./webimage-DiBGmjKS.js").then((m2) => m2.default));
 function decodeRowAcc(row, stride) {
   let length2 = row.length - stride;
   let offset2 = 0;

package/dist/index.js

@@ -1,4 +1,4 @@
-import { b, f, C, e, a, i, D, h, E, F, c, d, T, V } from "./index-BmYvVUY8.js";
+import { b, f, C, e, a, i, D, h, E, F, c, d, T, V } from "./index-DQNZPvU7.js";
 export {
   b as CellSetCompositionBarPlotSubscriber,
   f as CellSetExpressionPlot,

package/dist/{jpeg-CnRvmB8H.js → jpeg-6eOh2nfm.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-BmYvVUY8.js";
+import { B as BaseDecoder } from "./index-DQNZPvU7.js";
 const dctZigZag = new Int32Array([
   0,
   1,

package/dist/{lerc-DdM66WTL.js → lerc-DqyheC4U.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-BmYvVUY8.js";
+import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-DQNZPvU7.js";
 const LercParameters = {
   AddCompression: 1
 };

package/dist/{lzw-ahoob13H.js → lzw-BtWmo4l4.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-BmYvVUY8.js";
+import { B as BaseDecoder } from "./index-DQNZPvU7.js";
 const MIN_BITS = 9;
 const CLEAR_CODE = 256;
 const EOI_CODE = 257;

package/dist/{packbits-Ckd3nQz8.js → packbits-tosASsXM.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-BmYvVUY8.js";
+import { B as BaseDecoder } from "./index-DQNZPvU7.js";
 class PackbitsDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     const dataView = new DataView(buffer);

package/dist/{raw-B56udEa5.js → raw-D9gtw8Jf.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-BmYvVUY8.js";
+import { B as BaseDecoder } from "./index-DQNZPvU7.js";
 class RawDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return buffer;

package/dist/{webimage-CKIhq6Gi.js → webimage-DiBGmjKS.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-BmYvVUY8.js";
+import { B as BaseDecoder } from "./index-DQNZPvU7.js";
 class WebImageDecoder extends BaseDecoder {
   constructor() {
     super();

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/statistical-plots",
-  "version": "3.8.13",
+  "version": "3.9.1",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -28,13 +28,13 @@
     "react-aria": "^3.28.0",
     "internmap": "^2.0.3",
     "uuid": "^9.0.0",
-    "@vitessce/styles": "3.8.13",
-    "@vitessce/constants-internal": "3.8.13",
-    "@vitessce/utils": "3.8.13",
-    "@vitessce/sets-utils": "3.8.13",
-    "@vitessce/vega": "3.8.13",
-    "@vitessce/vit-s": "3.8.13",
-    "@vitessce/gl": "3.8.13"
+    "@vitessce/styles": "3.9.1",
+    "@vitessce/constants-internal": "3.9.1",
+    "@vitessce/sets-utils": "3.9.1",
+    "@vitessce/vega": "3.9.1",
+    "@vitessce/utils": "3.9.1",
+    "@vitessce/gl": "3.9.1",
+    "@vitessce/vit-s": "3.9.1"
   },
   "devDependencies": {
     "react": "18.3.1",