@vitessce/statistical-plots 3.6.6 → 3.6.8

package/dist/index.js

@@ -1,4 +1,4 @@
-import { b, f, C, e, a, i, D, h, E, F, c, d, T, V } from "./index-DKYKw8DX.js";
+import { b, f, C, e, a, i, D, h, E, F, c, d, T, V } from "./index-Dhdy8_KV.js";
 export {
   b as CellSetCompositionBarPlotSubscriber,
   f as CellSetExpressionPlot,

package/dist/{jpeg-L5T74jDu.js → jpeg-BAsU3Uj1.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-DKYKw8DX.js";
+import { B as BaseDecoder } from "./index-Dhdy8_KV.js";
 const dctZigZag = new Int32Array([
   0,
   1,

package/dist/{lerc-xXmKz_nL.js → lerc-Bs40GmLw.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-DKYKw8DX.js";
+import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-Dhdy8_KV.js";
 const LercParameters = {
   AddCompression: 1
 };

package/dist/{lzw-D-d5b3_9.js → lzw--6K-CH9V.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-DKYKw8DX.js";
+import { B as BaseDecoder } from "./index-Dhdy8_KV.js";
 const MIN_BITS = 9;
 const CLEAR_CODE = 256;
 const EOI_CODE = 257;

package/dist/{packbits-EdeFNk-p.js → packbits-DIcMoiDr.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-DKYKw8DX.js";
+import { B as BaseDecoder } from "./index-Dhdy8_KV.js";
 class PackbitsDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     const dataView = new DataView(buffer);

package/dist/{raw-B0E5tGhb.js → raw-TJbs5T8I.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-DKYKw8DX.js";
+import { B as BaseDecoder } from "./index-Dhdy8_KV.js";
 class RawDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return buffer;

package/dist/{webimage-Dr7tpGET.js → webimage-DcmYEYr-.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-DKYKw8DX.js";
+import { B as BaseDecoder } from "./index-Dhdy8_KV.js";
 class WebImageDecoder extends BaseDecoder {
   constructor() {
     super();

package/dist-tsc/CellSetCompositionBarPlotSubscriber.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"CellSetCompositionBarPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/CellSetCompositionBarPlotSubscriber.js"],"names":[],"mappings":"AAwBA,6EA8HC"}
+{"version":3,"file":"CellSetCompositionBarPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/CellSetCompositionBarPlotSubscriber.js"],"names":[],"mappings":"AAwBA,6EAqIC"}

package/dist-tsc/CellSetCompositionBarPlotSubscriber.js

@@ -1,6 +1,6 @@
 import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
 /* eslint-disable no-unused-vars */
-import React, { useMemo, useCallback } from 'react';
+import React, { useCallback } from 'react';
 import { TitleInfo, useCoordination, useLoaders, useReady, useGridItemSize, useObsSetStatsData, useMatchingLoader, useColumnNameMapping, } from '@vitessce/vit-s';
 import { ViewType, COMPONENT_COORDINATION_TYPES, ViewHelpMapping, DataType, } from '@vitessce/constants-internal';
 import { capitalize } from '@vitessce/utils';
@@ -22,9 +22,12 @@ export function CellSetCompositionBarPlotSubscriber(props) {
     const sampleSetsColumnNameMappingReversed = useColumnNameMapping(sampleSetsLoader, true);
     const rawSampleSetSelection = useRawSetPaths(sampleSetsColumnNameMapping, sampleSetSelection);
     const rawObsSetSelection = useRawSetPaths(obsSetsColumnNameMapping, obsSetSelection);
-    const [{ obsSetStats }, obsSetStatsStatus] = useObsSetStatsData(loaders, dataset, false, { obsType, sampleType }, 
+    const [{ obsSetStats }, obsSetStatsStatus, obsSetStatsUrls, obsSetStatsError,] = useObsSetStatsData(loaders, dataset, false, { obsType, sampleType }, 
     // These volcanoOptions are passed to ObsSetStatsAnndataLoader.loadMulti():
     { sampleSetSelection: rawSampleSetSelection, obsSetSelection: rawObsSetSelection });
+    const errors = [
+        obsSetStatsError,
+    ];
     const isReady = useReady([
         obsSetStatsStatus,
     ]);
@@ -36,5 +39,5 @@ export function CellSetCompositionBarPlotSubscriber(props) {
     // TODO: support the following options
     // - Use logFoldChange vs. intercept+effect for the bar y-value.
     // - Boolean flag to allow hiding non-significant bars.
-    return (_jsx(TitleInfo, { title: `${capitalize(obsType)} Set Composition Analysis Plot`, removeGridComponent: removeGridComponent, theme: theme, isReady: isReady, helpText: helpText, children: _jsx("div", { ref: containerRef, className: classes.vegaContainer, children: obsSetStats ? (_jsx(CellSetCompositionBarPlot, { theme: theme, width: width, height: height, obsType: obsType, obsSetsColumnNameMapping: obsSetsColumnNameMapping, obsSetsColumnNameMappingReversed: obsSetsColumnNameMappingReversed, sampleSetsColumnNameMapping: sampleSetsColumnNameMapping, sampleSetsColumnNameMappingReversed: sampleSetsColumnNameMappingReversed, sampleSetSelection: sampleSetSelection, obsSetSelection: obsSetSelection, obsSetColor: obsSetColor, sampleSetColor: sampleSetColor, data: obsSetStats, onBarSelect: onBarSelect })) : (_jsxs("span", { children: ["Select at least one ", obsType, " set and a pair of ", sampleType, " sets."] })) }) }));
+    return (_jsx(TitleInfo, { title: `${capitalize(obsType)} Set Composition Analysis Plot`, removeGridComponent: removeGridComponent, theme: theme, isReady: isReady, helpText: helpText, errors: errors, children: _jsx("div", { ref: containerRef, className: classes.vegaContainer, children: obsSetStats ? (_jsx(CellSetCompositionBarPlot, { theme: theme, width: width, height: height, obsType: obsType, obsSetsColumnNameMapping: obsSetsColumnNameMapping, obsSetsColumnNameMappingReversed: obsSetsColumnNameMappingReversed, sampleSetsColumnNameMapping: sampleSetsColumnNameMapping, sampleSetsColumnNameMappingReversed: sampleSetsColumnNameMappingReversed, sampleSetSelection: sampleSetSelection, obsSetSelection: obsSetSelection, obsSetColor: obsSetColor, sampleSetColor: sampleSetColor, data: obsSetStats, onBarSelect: onBarSelect })) : (_jsxs("span", { children: ["Select at least one ", obsType, " set and a pair of ", sampleType, " sets."] })) }) }));
 }

package/dist-tsc/CellSetExpressionPlotSubscriber.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"CellSetExpressionPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/CellSetExpressionPlotSubscriber.js"],"names":[],"mappings":"AA0HA;;;;;;;;;GASG;AACH,uDALG;IAAwB,mBAAmB;IACrB,kBAAkB,EAAhC,MAAM;IAEQ,KAAK,EAAnB,MAAM;CAChB,eAwLA"}
+{"version":3,"file":"CellSetExpressionPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/CellSetExpressionPlotSubscriber.js"],"names":[],"mappings":"AA0HA;;;;;;;;;GASG;AACH,uDALG;IAAwB,mBAAmB;IACrB,kBAAkB,EAAhC,MAAM;IAEQ,KAAK,EAAnB,MAAM;CAChB,eA8MA"}

package/dist-tsc/CellSetExpressionPlotSubscriber.js

@@ -97,16 +97,24 @@ export function CellSetExpressionPlotSubscriber(props) {
     const [width, height, containerRef] = useGridItemSize();
     const transformOptions = VALUE_TRANSFORM_OPTIONS;
     // Get data from loaders using the data hooks.
+    const [
     // eslint-disable-next-line no-unused-vars
-    const [expressionData, loadedFeatureSelection, featureSelectionStatus] = useFeatureSelection(loaders, dataset, false, geneSelection, { obsType, featureType, featureValueType });
+    expressionData, loadedFeatureSelection, featureSelectionStatus, featureSelectionErrors,] = useFeatureSelection(loaders, dataset, false, geneSelection, { obsType, featureType, featureValueType });
     // TODO: support multiple feature labels using featureLabelsType coordination values.
-    // eslint-disable-next-line max-len
-    const [{ featureLabelsMap: featureLabelsMapOrig }, featureLabelsStatus, featureLabelsUrls] = useFeatureLabelsData(loaders, dataset, false, {}, {}, { featureType });
+    const [{ featureLabelsMap: featureLabelsMapOrig }, featureLabelsStatus, featureLabelsUrls, featureLabelsError,] = useFeatureLabelsData(loaders, dataset, false, {}, {}, { featureType });
     const [featureLabelsMap, expandedFeatureLabelsStatus] = useExpandedFeatureLabelsMap(featureType, featureLabelsMapOrig, { stripCuriePrefixes: true });
-    const [{ obsIndex }, matrixIndicesStatus, matrixIndicesUrls] = useObsFeatureMatrixIndices(loaders, dataset, false, { obsType, featureType, featureValueType });
-    const [{ obsSets: cellSets }, obsSetsStatus, obsSetsUrls] = useObsSetsData(loaders, dataset, true, {}, {}, { obsType });
-    const [{ sampleSets }, sampleSetsStatus, sampleSetsUrls] = useSampleSetsData(loaders, dataset, false, { setSampleSetColor }, { sampleSetColor }, { sampleType });
-    const [{ sampleEdges }, sampleEdgesStatus, sampleEdgesUrls] = useSampleEdgesData(loaders, dataset, false, {}, {}, { obsType, sampleType });
+    const [{ obsIndex }, matrixIndicesStatus, matrixIndicesUrls, matrixIndicesError,] = useObsFeatureMatrixIndices(loaders, dataset, false, { obsType, featureType, featureValueType });
+    const [{ obsSets: cellSets }, obsSetsStatus, obsSetsUrls, obsSetsError] = useObsSetsData(loaders, dataset, true, {}, {}, { obsType });
+    const [{ sampleSets }, sampleSetsStatus, sampleSetsUrls, sampleSetsError,] = useSampleSetsData(loaders, dataset, false, { setSampleSetColor }, { sampleSetColor }, { sampleType });
+    const [{ sampleEdges }, sampleEdgesStatus, sampleEdgesUrls, sampleEdgesError,] = useSampleEdgesData(loaders, dataset, false, {}, {}, { obsType, sampleType });
+    const errors = [
+        ...featureSelectionErrors,
+        featureLabelsError,
+        matrixIndicesError,
+        obsSetsError,
+        sampleSetsError,
+        sampleEdgesError,
+    ];
     const isReady = useReady([
         featureSelectionStatus,
         matrixIndicesStatus,
@@ -139,5 +147,5 @@ export function CellSetExpressionPlotSubscriber(props) {
     // Use empty string when firstGeneSelected is null
     const titleSuffix = featureSuffix ? ` (${featureSuffix})` : '';
     return (_jsx(TitleInfo, { title: title ? `${title}${titleSuffix}`
-            : `${capitalize(featureValueType)} by ${capitalize(obsType)} Set${titleSuffix}`, closeButtonVisible: closeButtonVisible, downloadButtonVisible: downloadButtonVisible, removeGridComponent: removeGridComponent, urls: urls, theme: theme, isReady: isReady, helpText: helpText, options: (_jsx(CellSetExpressionPlotOptions, { featureValueTransform: featureValueTransform, setFeatureValueTransform: setFeatureValueTransform, featureValueTransformCoefficient: featureValueTransformCoefficient, setFeatureValueTransformCoefficient: setFeatureValueTransformCoefficient, transformOptions: transformOptions, featureAggregationStrategy: featureAggregationStrategy, setFeatureAggregationStrategy: setFeatureAggregationStrategy })), children: _jsx("div", { ref: containerRef, className: classes.vegaContainer, children: histogramData ? (_jsx(CellSetExpressionPlot, { yMin: yMin, yUnits: yUnits, jitter: jitter, obsSetSelection: cellSetSelection, obsSetColor: cellSetColor, sampleSetSelection: sampleSetSelection, sampleSetColor: sampleSetColor, colors: setArr, data: histogramData, exprMax: exprMax, theme: theme, width: width, height: height, obsType: obsType, featureType: featureType, featureValueType: featureValueType, featureValueTransformName: selectedTransformName, xAxisTitle: xAxisTitle })) : (_jsxs("span", { children: ["Select a ", featureType, "."] })) }) }));
+            : `${capitalize(featureValueType)} by ${capitalize(obsType)} Set${titleSuffix}`, closeButtonVisible: closeButtonVisible, downloadButtonVisible: downloadButtonVisible, removeGridComponent: removeGridComponent, urls: urls, theme: theme, isReady: isReady, helpText: helpText, errors: errors, options: (_jsx(CellSetExpressionPlotOptions, { featureValueTransform: featureValueTransform, setFeatureValueTransform: setFeatureValueTransform, featureValueTransformCoefficient: featureValueTransformCoefficient, setFeatureValueTransformCoefficient: setFeatureValueTransformCoefficient, transformOptions: transformOptions, featureAggregationStrategy: featureAggregationStrategy, setFeatureAggregationStrategy: setFeatureAggregationStrategy })), children: _jsx("div", { ref: containerRef, className: classes.vegaContainer, children: histogramData ? (_jsx(CellSetExpressionPlot, { yMin: yMin, yUnits: yUnits, jitter: jitter, obsSetSelection: cellSetSelection, obsSetColor: cellSetColor, sampleSetSelection: sampleSetSelection, sampleSetColor: sampleSetColor, colors: setArr, data: histogramData, exprMax: exprMax, theme: theme, width: width, height: height, obsType: obsType, featureType: featureType, featureValueType: featureValueType, featureValueTransformName: selectedTransformName, xAxisTitle: xAxisTitle })) : (_jsxs("span", { children: ["Select a ", featureType, "."] })) }) }));
 }

package/dist-tsc/CellSetSizesPlotSubscriber.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"CellSetSizesPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/CellSetSizesPlotSubscriber.js"],"names":[],"mappings":"AAgBA;;;;;;;;;;GAUG;AACH,kDANG;IAAwB,mBAAmB;IACnB,OAAO;IAET,KAAK,EAAnB,MAAM;IACQ,KAAK,EAAnB,MAAM;CAChB,eAgIA"}
+{"version":3,"file":"CellSetSizesPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/CellSetSizesPlotSubscriber.js"],"names":[],"mappings":"AAgBA;;;;;;;;;;GAUG;AACH,kDANG;IAAwB,mBAAmB;IACnB,OAAO;IAET,KAAK,EAAnB,MAAM;IACQ,KAAK,EAAnB,MAAM;CAChB,eAoIA"}

package/dist-tsc/CellSetSizesPlotSubscriber.js

@@ -31,7 +31,10 @@ export function CellSetSizesPlotSubscriber(props) {
     // the previous cell set that was selected
     const [prevCellSetSelection, setPrevCellSetSelection] = useState([]);
     // Get data from loaders using the data hooks.
-    const [{ obsSets: cellSets }, obsSetsStatus, obsSetsUrls] = useObsSetsData(loaders, dataset, true, { setObsSetSelection: setCellSetSelection, setObsSetColor: setCellSetColor }, { obsSetSelection: cellSetSelection, obsSetColor: cellSetColor }, { obsType });
+    const [{ obsSets: cellSets }, obsSetsStatus, obsSetsUrls, obsSetsError] = useObsSetsData(loaders, dataset, true, { setObsSetSelection: setCellSetSelection, setObsSetColor: setCellSetColor }, { obsSetSelection: cellSetSelection, obsSetColor: cellSetColor }, { obsType });
+    const errors = [
+        obsSetsError,
+    ];
     const isReady = useReady([obsSetsStatus]);
     const urls = useUrls([obsSetsUrls]);
     const mergedCellSets = useMemo(() => mergeObsSets(cellSets, additionalCellSets), [cellSets, additionalCellSets]);
@@ -71,5 +74,5 @@ export function CellSetSizesPlotSubscriber(props) {
             setCellSetSelection([...cellSetSelection, setNamePath]);
         }
     };
-    return (_jsx(TitleInfo, { title: title, closeButtonVisible: closeButtonVisible, downloadButtonVisible: downloadButtonVisible, removeGridComponent: removeGridComponent, urls: urls, theme: theme, isReady: isReady, helpText: helpText, children: _jsx("div", { ref: containerRef, className: classes.vegaContainer, children: _jsx(CellSetSizesPlot, { data: data, onBarSelect: onBarSelect, theme: theme, width: width, height: height, obsType: obsType }) }) }));
+    return (_jsx(TitleInfo, { title: title, closeButtonVisible: closeButtonVisible, downloadButtonVisible: downloadButtonVisible, removeGridComponent: removeGridComponent, urls: urls, theme: theme, isReady: isReady, helpText: helpText, errors: errors, children: _jsx("div", { ref: containerRef, className: classes.vegaContainer, children: _jsx(CellSetSizesPlot, { data: data, onBarSelect: onBarSelect, theme: theme, width: width, height: height, obsType: obsType }) }) }));
 }

package/dist-tsc/DotPlotSubscriber.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"DotPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/DotPlotSubscriber.js"],"names":[],"mappings":"AAmBA;;;;;;;GAOG;AACH,yCALG;IAAwB,mBAAmB;IACrB,kBAAkB,EAAhC,MAAM;IAEQ,KAAK,EAAnB,MAAM;CAChB,eAsJA"}
+{"version":3,"file":"DotPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/DotPlotSubscriber.js"],"names":[],"mappings":"AAmBA;;;;;;;GAOG;AACH,yCALG;IAAwB,mBAAmB;IACrB,kBAAkB,EAAhC,MAAM;IAEQ,KAAK,EAAnB,MAAM;CAChB,eA6KA"}

package/dist-tsc/DotPlotSubscriber.js

@@ -25,14 +25,24 @@ export function DotPlotSubscriber(props) {
     const transformOptions = VALUE_TRANSFORM_OPTIONS;
     const isStratified = Array.isArray(sampleSetSelection) && sampleSetSelection.length > 1;
     // Get data from loaders using the data hooks.
+    const [
     // eslint-disable-next-line no-unused-vars
-    const [expressionData, loadedFeatureSelection, featureSelectionStatus] = useFeatureSelection(loaders, dataset, false, geneSelection, { obsType, featureType, featureValueType });
+    expressionData, loadedFeatureSelection, featureSelectionStatus, featureSelectionErrors,] = useFeatureSelection(loaders, dataset, false, geneSelection, { obsType, featureType, featureValueType });
     // TODO: support multiple feature labels using featureLabelsType coordination values.
-    const [{ featureLabelsMap }, featureLabelsStatus, featureLabelsUrl] = useFeatureLabelsData(loaders, dataset, false, {}, {}, { featureType });
-    const [{ obsIndex }, matrixIndicesStatus, matrixIndicesUrl] = useObsFeatureMatrixIndices(loaders, dataset, false, { obsType, featureType, featureValueType });
-    const [{ obsSets: cellSets }, obsSetsStatus, obsSetsUrl] = useObsSetsData(loaders, dataset, true, {}, {}, { obsType });
-    const [{ sampleSets }, sampleSetsStatus, sampleSetsUrl] = useSampleSetsData(loaders, dataset, false, {}, {}, { sampleType });
-    const [{ sampleEdges }, sampleEdgesStatus, sampleEdgesUrl] = useSampleEdgesData(loaders, dataset, false, {}, {}, { obsType, sampleType });
+    const [{ featureLabelsMap }, featureLabelsStatus, featureLabelsUrl, featureLabelsError,] = useFeatureLabelsData(loaders, dataset, false, {}, {}, { featureType });
+    const [{ obsIndex }, matrixIndicesStatus, matrixIndicesUrl, matrixIndicesError,] = useObsFeatureMatrixIndices(loaders, dataset, false, { obsType, featureType, featureValueType });
+    const [{ obsSets: cellSets }, obsSetsStatus, obsSetsUrl, obsSetsError,] = useObsSetsData(loaders, dataset, true, {}, {}, { obsType });
+    const [{ sampleSets }, sampleSetsStatus, sampleSetsUrl, sampleSetsError,] = useSampleSetsData(loaders, dataset, false, {}, {}, { sampleType });
+    const [{ sampleEdges }, sampleEdgesStatus, sampleEdgesUrl, sampleEdgesError,] = useSampleEdgesData(loaders, dataset, false, {}, {}, { obsType, sampleType });
+    // Consolidate error values from data hooks.
+    const errors = [
+        ...featureSelectionErrors,
+        featureLabelsError,
+        matrixIndicesError,
+        obsSetsError,
+        sampleSetsError,
+        sampleEdgesError,
+    ];
     const isReady = useReady([
         featureSelectionStatus,
         matrixIndicesStatus,
@@ -50,5 +60,5 @@ export function DotPlotSubscriber(props) {
     ]);
     const [resultArr, meanExpressionMax] = useExpressionSummaries(sampleEdges, sampleSets, sampleSetSelection, expressionData, obsIndex, cellSets, additionalCellSets, geneSelection, cellSetSelection, cellSetColor, featureValueTransform, featureValueTransformCoefficient, posThreshold, featureLabelsMap);
     const selectedTransformName = transformOptions.find(o => o.value === featureValueTransform)?.name;
-    return (_jsx(TitleInfo, { title: title, removeGridComponent: removeGridComponent, urls: urls, theme: theme, isReady: isReady, helpText: helpText, options: (_jsx(CellSetExpressionPlotOptions, { featureValueTransform: featureValueTransform, setFeatureValueTransform: setFeatureValueTransform, featureValueTransformCoefficient: featureValueTransformCoefficient, setFeatureValueTransformCoefficient: setFeatureValueTransformCoefficient, transformOptions: transformOptions, featureValuePositivityThreshold: posThreshold, setFeatureValuePositivityThreshold: setPosThreshold, featureValueColormap: featureValueColormap, setFeatureValueColormap: setFeatureValueColormap })), children: _jsx("div", { ref: containerRef, className: classes.vegaContainer, children: resultArr ? (_jsx(DotPlot, { isStratified: isStratified, transpose: transpose, domainMax: meanExpressionMax, data: resultArr, theme: theme, width: width, height: height, obsType: obsType, sampleType: sampleType, featureType: featureType, featureValueType: featureValueType, featureValueTransformName: selectedTransformName, featureValueColormap: featureValueColormap, obsSetSelection: cellSetSelection, obsSetColor: cellSetColor })) : (_jsxs("span", { children: ["Select at least one ", featureType, "."] })) }) }));
+    return (_jsx(TitleInfo, { title: title, removeGridComponent: removeGridComponent, urls: urls, theme: theme, isReady: isReady, helpText: helpText, errors: errors, options: (_jsx(CellSetExpressionPlotOptions, { featureValueTransform: featureValueTransform, setFeatureValueTransform: setFeatureValueTransform, featureValueTransformCoefficient: featureValueTransformCoefficient, setFeatureValueTransformCoefficient: setFeatureValueTransformCoefficient, transformOptions: transformOptions, featureValuePositivityThreshold: posThreshold, setFeatureValuePositivityThreshold: setPosThreshold, featureValueColormap: featureValueColormap, setFeatureValueColormap: setFeatureValueColormap })), children: _jsx("div", { ref: containerRef, className: classes.vegaContainer, children: resultArr ? (_jsx(DotPlot, { isStratified: isStratified, transpose: transpose, domainMax: meanExpressionMax, data: resultArr, theme: theme, width: width, height: height, obsType: obsType, sampleType: sampleType, featureType: featureType, featureValueType: featureValueType, featureValueTransformName: selectedTransformName, featureValueColormap: featureValueColormap, obsSetSelection: cellSetSelection, obsSetColor: cellSetColor })) : (_jsxs("span", { children: ["Select at least one ", featureType, "."] })) }) }));
 }

package/dist-tsc/ExpressionHistogramSubscriber.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ExpressionHistogramSubscriber.d.ts","sourceRoot":"","sources":["../src/ExpressionHistogramSubscriber.js"],"names":[],"mappings":"AAcA;;;;;;;;;GASG;AACH,qDALG;IAAwB,mBAAmB;IACrB,kBAAkB,EAAhC,MAAM;IAEQ,KAAK,EAAnB,MAAM;CAChB,eA4HA"}
+{"version":3,"file":"ExpressionHistogramSubscriber.d.ts","sourceRoot":"","sources":["../src/ExpressionHistogramSubscriber.js"],"names":[],"mappings":"AAcA;;;;;;;;;GASG;AACH,qDALG;IAAwB,mBAAmB;IACrB,kBAAkB,EAAhC,MAAM;IAEQ,KAAK,EAAnB,MAAM;CAChB,eAsIA"}

package/dist-tsc/ExpressionHistogramSubscriber.js

@@ -24,9 +24,15 @@ export function ExpressionHistogramSubscriber(props) {
     const [{ dataset, obsType, featureType, featureValueType, featureSelection: geneSelection, additionalObsSets: additionalCellSets, obsSetColor: cellSetColor, }, { setAdditionalObsSets: setAdditionalCellSets, setObsSetColor: setCellSetColor, setObsColorEncoding: setCellColorEncoding, setObsSetSelection: setCellSetSelection, }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType.FEATURE_VALUE_HISTOGRAM], coordinationScopes);
     const [width, height, containerRef] = useGridItemSize();
     // Get data from loaders using the data hooks.
-    const [{ obsIndex, featureIndex, obsFeatureMatrix }, matrixStatus, matrixUrls,] = useObsFeatureMatrixData(loaders, dataset, true, {}, {}, { obsType, featureType, featureValueType });
+    const [{ obsIndex, featureIndex, obsFeatureMatrix }, matrixStatus, matrixUrls, matrixError,] = useObsFeatureMatrixData(loaders, dataset, true, {}, {}, { obsType, featureType, featureValueType });
+    const [
     // eslint-disable-next-line no-unused-vars
-    const [expressionData, loadedFeatureSelection, featureSelectionStatus] = useFeatureSelection(loaders, dataset, false, geneSelection, { obsType, featureType, featureValueType });
+    expressionData, loadedFeatureSelection, featureSelectionStatus, featureSelectionErrors,] = useFeatureSelection(loaders, dataset, false, geneSelection, { obsType, featureType, featureValueType });
+    // Consolidate error values from data hooks.
+    const errors = [
+        matrixError,
+        ...featureSelectionErrors,
+    ];
     const isReady = useReady([
         matrixStatus,
         featureSelectionStatus,
@@ -67,5 +73,5 @@ export function ExpressionHistogramSubscriber(props) {
     }, [additionalCellSets, cellSetColor, data, setAdditionalCellSets,
         setCellColorEncoding, setCellSetColor, setCellSetSelection, firstGeneSelected,
     ]);
-    return (_jsx(TitleInfo, { title: `Histogram${(firstGeneSelected ? ` (${firstGeneSelected})` : '')}`, closeButtonVisible: closeButtonVisible, downloadButtonVisible: downloadButtonVisible, removeGridComponent: removeGridComponent, urls: urls, theme: theme, isReady: isReady, helpText: helpText, children: _jsx("div", { ref: containerRef, className: classes.vegaContainer, children: _jsx(ExpressionHistogram, { geneSelection: geneSelection, obsType: obsType, featureType: featureType, featureValueType: featureValueType, onSelect: onSelect, data: data, theme: theme, width: width, height: height }) }) }));
+    return (_jsx(TitleInfo, { title: `Histogram${(firstGeneSelected ? ` (${firstGeneSelected})` : '')}`, closeButtonVisible: closeButtonVisible, downloadButtonVisible: downloadButtonVisible, removeGridComponent: removeGridComponent, urls: urls, theme: theme, isReady: isReady, helpText: helpText, errors: errors, children: _jsx("div", { ref: containerRef, className: classes.vegaContainer, children: _jsx(ExpressionHistogram, { geneSelection: geneSelection, obsType: obsType, featureType: featureType, featureValueType: featureValueType, onSelect: onSelect, data: data, theme: theme, width: width, height: height }) }) }));
 }

package/dist-tsc/FeatureBarPlotSubscriber.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"FeatureBarPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/FeatureBarPlotSubscriber.js"],"names":[],"mappings":"AAkBA,kEA4IC"}
+{"version":3,"file":"FeatureBarPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/FeatureBarPlotSubscriber.js"],"names":[],"mappings":"AAkBA,kEAuJC"}

package/dist-tsc/FeatureBarPlotSubscriber.js

@@ -14,11 +14,18 @@ export function FeatureBarPlotSubscriber(props) {
     // console.log("BarPlot: " + cellHighlight)
     const [width, height, containerRef] = useGridItemSize();
     // Get data from loaders using the data hooks.
+    const [
     // eslint-disable-next-line no-unused-vars
-    const [expressionData, loadedFeatureSelection, featureSelectionStatus] = useFeatureSelection(loaders, dataset, false, geneSelection, { obsType, featureType, featureValueType });
+    expressionData, loadedFeatureSelection, featureSelectionStatus, featureSelectionErrors,] = useFeatureSelection(loaders, dataset, false, geneSelection, { obsType, featureType, featureValueType });
     // TODO: support multiple feature labels using featureLabelsType coordination values.
-    const [{ featureLabelsMap }, featureLabelsStatus, featureLabelsUrls] = useFeatureLabelsData(loaders, dataset, false, {}, {}, { featureType });
-    const [{ obsIndex }, matrixIndicesStatus, matrixIndicesUrls,] = useObsFeatureMatrixIndices(loaders, dataset, false, { obsType, featureType, featureValueType });
+    const [{ featureLabelsMap }, featureLabelsStatus, featureLabelsUrls, featureLabelsError,] = useFeatureLabelsData(loaders, dataset, false, {}, {}, { featureType });
+    const [{ obsIndex }, matrixIndicesStatus, matrixIndicesUrls, matrixIndicesError,] = useObsFeatureMatrixIndices(loaders, dataset, false, { obsType, featureType, featureValueType });
+    // Consolidate error values from data hooks.
+    const errors = [
+        ...featureSelectionErrors,
+        featureLabelsError,
+        matrixIndicesError,
+    ];
     const isReady = useReady([
         featureSelectionStatus,
         matrixIndicesStatus,
@@ -58,5 +65,5 @@ export function FeatureBarPlotSubscriber(props) {
         featureValueTransform, featureValueTransformCoefficient,
         firstGeneSelected,
     ]);
-    return (_jsx(TitleInfo, { title: `Feature Values${(firstGeneSelected ? ` (${firstGeneSelected})` : '')}`, removeGridComponent: removeGridComponent, urls: urls, theme: theme, isReady: isReady, helpText: helpText, children: _jsx("div", { ref: containerRef, className: classes.vegaContainer, children: expressionArr ? (_jsx(FeatureBarPlot, { yMin: yMin, yMax: expressionMax, yUnits: yUnits, data: expressionArr, theme: theme, width: width, height: height, obsType: obsType, cellHighlight: cellHighlight, cellSetSelection: cellSetSelection, additionalCellSets: additionalCellSets, cellSetColor: cellSetColor, featureType: featureType, featureValueType: featureValueType, featureName: firstGeneSelected, onBarSelect: onBarSelect, onBarHighlight: onBarHighlight })) : (_jsxs("span", { children: ["Select a ", featureType, "."] })) }) }));
+    return (_jsx(TitleInfo, { title: `Feature Values${(firstGeneSelected ? ` (${firstGeneSelected})` : '')}`, removeGridComponent: removeGridComponent, urls: urls, theme: theme, isReady: isReady, helpText: helpText, errors: errors, children: _jsx("div", { ref: containerRef, className: classes.vegaContainer, children: expressionArr ? (_jsx(FeatureBarPlot, { yMin: yMin, yMax: expressionMax, yUnits: yUnits, data: expressionArr, theme: theme, width: width, height: height, obsType: obsType, cellHighlight: cellHighlight, cellSetSelection: cellSetSelection, additionalCellSets: additionalCellSets, cellSetColor: cellSetColor, featureType: featureType, featureValueType: featureValueType, featureName: firstGeneSelected, onBarSelect: onBarSelect, onBarHighlight: onBarHighlight })) : (_jsxs("span", { children: ["Select a ", featureType, "."] })) }) }));
 }

package/dist-tsc/FeatureSetEnrichmentBarPlotSubscriber.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"FeatureSetEnrichmentBarPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/FeatureSetEnrichmentBarPlotSubscriber.js"],"names":[],"mappings":"AA0BA,+EA8IC"}
+{"version":3,"file":"FeatureSetEnrichmentBarPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/FeatureSetEnrichmentBarPlotSubscriber.js"],"names":[],"mappings":"AA0BA,+EAqJC"}

package/dist-tsc/FeatureSetEnrichmentBarPlotSubscriber.js

@@ -23,9 +23,12 @@ export function FeatureSetEnrichmentBarPlotSubscriber(props) {
     const sampleSetsColumnNameMappingReversed = useColumnNameMapping(sampleSetsLoader, true);
     const rawSampleSetSelection = useRawSetPaths(sampleSetsColumnNameMapping, sampleSetSelection);
     const rawObsSetSelection = useRawSetPaths(obsSetsColumnNameMapping, obsSetSelection);
-    const [{ featureSetStats }, featureSetStatsStatus] = useFeatureSetStatsData(loaders, dataset, false, { obsType, featureType, sampleType }, 
+    const [{ featureSetStats }, featureSetStatsStatus, featureSetStatsUrls, featureSetStatsError,] = useFeatureSetStatsData(loaders, dataset, false, { obsType, featureType, sampleType }, 
     // These volcanoOptions are passed to ObsSetStatsAnndataLoader.loadMulti():
     { sampleSetSelection: rawSampleSetSelection, obsSetSelection: rawObsSetSelection });
+    const errors = [
+        featureSetStatsError,
+    ];
     const isReady = useReady([
         featureSetStatsStatus,
     ]);
@@ -50,5 +53,5 @@ export function FeatureSetEnrichmentBarPlotSubscriber(props) {
     // - max number of bars to show
     // - Boolean flag: should same pathway which appears multiple times
     //   be de-duplicated (one bar per pathway, using most-significant result)?
-    return (_jsx(TitleInfo, { title: `${capitalize(featureType)} Set Enrichment Plot`, removeGridComponent: removeGridComponent, theme: theme, isReady: isReady, helpText: helpText, children: _jsx("div", { ref: containerRef, className: classes.vegaContainer, children: featureSetStats ? (_jsx(FeatureSetEnrichmentBarPlot, { theme: theme, width: width, height: height, obsType: obsType, featureType: featureType, obsSetsColumnNameMapping: obsSetsColumnNameMapping, obsSetsColumnNameMappingReversed: obsSetsColumnNameMappingReversed, sampleSetsColumnNameMapping: sampleSetsColumnNameMapping, sampleSetsColumnNameMappingReversed: sampleSetsColumnNameMappingReversed, sampleSetSelection: sampleSetSelection, obsSetSelection: obsSetSelection, obsSetColor: obsSetColor, sampleSetColor: sampleSetColor, data: featureSetStats, onBarSelect: onBarSelect, pValueThreshold: 0.01 })) : (_jsxs("span", { children: ["Select at least one ", obsType, " set."] })) }) }));
+    return (_jsx(TitleInfo, { title: `${capitalize(featureType)} Set Enrichment Plot`, removeGridComponent: removeGridComponent, theme: theme, isReady: isReady, helpText: helpText, errors: errors, children: _jsx("div", { ref: containerRef, className: classes.vegaContainer, children: featureSetStats ? (_jsx(FeatureSetEnrichmentBarPlot, { theme: theme, width: width, height: height, obsType: obsType, featureType: featureType, obsSetsColumnNameMapping: obsSetsColumnNameMapping, obsSetsColumnNameMappingReversed: obsSetsColumnNameMappingReversed, sampleSetsColumnNameMapping: sampleSetsColumnNameMapping, sampleSetsColumnNameMappingReversed: sampleSetsColumnNameMappingReversed, sampleSetSelection: sampleSetSelection, obsSetSelection: obsSetSelection, obsSetColor: obsSetColor, sampleSetColor: sampleSetColor, data: featureSetStats, onBarSelect: onBarSelect, pValueThreshold: 0.01 })) : (_jsxs("span", { children: ["Select at least one ", obsType, " set."] })) }) }));
 }

package/dist-tsc/FeatureStatsTableSubscriber.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"FeatureStatsTableSubscriber.d.ts","sourceRoot":"","sources":["../src/FeatureStatsTableSubscriber.js"],"names":[],"mappings":"AAoBA,qEAgHC"}
+{"version":3,"file":"FeatureStatsTableSubscriber.d.ts","sourceRoot":"","sources":["../src/FeatureStatsTableSubscriber.js"],"names":[],"mappings":"AAoBA,qEAuHC"}

package/dist-tsc/FeatureStatsTableSubscriber.js

@@ -18,11 +18,14 @@ export function FeatureStatsTableSubscriber(props) {
     const sampleSetsColumnNameMappingReversed = useColumnNameMapping(sampleSetsLoader, true);
     const rawSampleSetSelection = useRawSetPaths(sampleSetsColumnNameMapping, sampleSetSelection);
     const rawObsSetSelection = useRawSetPaths(obsSetsColumnNameMapping, obsSetSelection);
-    const [{ featureStats }, featureStatsStatus] = useFeatureStatsData(loaders, dataset, false, { obsType, featureType, sampleType }, 
+    const [{ featureStats }, featureStatsStatus, featureStatsUrls, featureStatsError,] = useFeatureStatsData(loaders, dataset, false, { obsType, featureType, sampleType }, 
     // These volcanoOptions are passed to FeatureStatsAnndataLoader.loadMulti():
     { sampleSetSelection: rawSampleSetSelection, obsSetSelection: rawObsSetSelection });
+    const errors = [
+        featureStatsError,
+    ];
     const isReady = useReady([
         featureStatsStatus,
     ]);
-    return (_jsx(TitleInfo, { title: title, removeGridComponent: removeGridComponent, theme: theme, isReady: isReady, helpText: helpText, withPadding: false, children: featureStats ? (_jsx(FeatureStatsTable, { theme: theme, obsType: obsType, featureType: featureType, obsSetsColumnNameMapping: obsSetsColumnNameMapping, obsSetsColumnNameMappingReversed: obsSetsColumnNameMappingReversed, sampleSetsColumnNameMapping: sampleSetsColumnNameMapping, sampleSetsColumnNameMappingReversed: sampleSetsColumnNameMappingReversed, sampleSetSelection: sampleSetSelection, obsSetSelection: obsSetSelection, obsSetColor: obsSetColor, sampleSetColor: sampleSetColor, data: featureStats, featureSelection: featureSelection, setFeatureSelection: setFeatureSelection, featurePointSignificanceThreshold: featurePointSignificanceThreshold, featurePointFoldChangeThreshold: featurePointFoldChangeThreshold })) : (_jsxs("p", { style: { padding: '12px' }, children: ["Select at least one ", obsType, " set."] })) }));
+    return (_jsx(TitleInfo, { title: title, removeGridComponent: removeGridComponent, theme: theme, isReady: isReady, helpText: helpText, errors: errors, withPadding: false, children: featureStats ? (_jsx(FeatureStatsTable, { theme: theme, obsType: obsType, featureType: featureType, obsSetsColumnNameMapping: obsSetsColumnNameMapping, obsSetsColumnNameMappingReversed: obsSetsColumnNameMappingReversed, sampleSetsColumnNameMapping: sampleSetsColumnNameMapping, sampleSetsColumnNameMappingReversed: sampleSetsColumnNameMappingReversed, sampleSetSelection: sampleSetSelection, obsSetSelection: obsSetSelection, obsSetColor: obsSetColor, sampleSetColor: sampleSetColor, data: featureStats, featureSelection: featureSelection, setFeatureSelection: setFeatureSelection, featurePointSignificanceThreshold: featurePointSignificanceThreshold, featurePointFoldChangeThreshold: featurePointFoldChangeThreshold })) : (_jsxs("p", { style: { padding: '12px' }, children: ["Select at least one ", obsType, " set."] })) }));
 }

package/dist-tsc/TreemapSubscriber.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"TreemapSubscriber.d.ts","sourceRoot":"","sources":["../src/TreemapSubscriber.js"],"names":[],"mappings":"AAyBA,2DAgQC"}
+{"version":3,"file":"TreemapSubscriber.d.ts","sourceRoot":"","sources":["../src/TreemapSubscriber.js"],"names":[],"mappings":"AAyBA,2DA8QC"}

package/dist-tsc/TreemapSubscriber.js

@@ -19,16 +19,22 @@ export function TreemapSubscriber(props) {
     const [{ dataset, obsType, featureType, featureValueType, obsFilter, obsHighlight, obsSetSelection, obsSetFilter, obsSelection, obsSelectionMode, obsSetHighlight, obsSetColor, obsColorEncoding, additionalObsSets, sampleType, sampleSetSelection, sampleSetFilter, sampleSetColor, sampleSelection, sampleSelectionMode, sampleFilter, sampleFilterMode, sampleHighlight, hierarchyLevels, }, { setObsFilter, setObsSelection, setObsSetFilter, setObsSetSelection, setObsSelectionMode, setObsFilterMode, setObsHighlight, setObsSetColor, setObsColorEncoding, setAdditionalObsSets, setSampleFilter, setSampleSetFilter, setSampleFilterMode, setSampleSelection, setSampleSetSelection, setSampleSelectionMode, setSampleHighlight, setSampleSetColor, setHierarchyLevels, }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType.TREEMAP], coordinationScopes);
     const [width, height, containerRef] = useGridItemSize();
     // TODO: how to deal with multimodal cases (multiple obsIndex, one per modality)?
-    const [{ obsIndex }, matrixIndicesStatus, matrixIndicesUrls] = useObsFeatureMatrixIndices(loaders, dataset, false, { obsType, featureType, featureValueType });
-    const [{ obsSets }, obsSetsStatus, obsSetsUrls] = useObsSetsData(loaders, dataset, true, {}, {}, { obsType });
-    const [{ sampleIndex, sampleSets }, sampleSetsStatus, sampleSetsUrls] = useSampleSetsData(loaders, dataset, 
+    const [{ obsIndex }, matrixIndicesStatus, matrixIndicesUrls, matrixIndicesError,] = useObsFeatureMatrixIndices(loaders, dataset, false, { obsType, featureType, featureValueType });
+    const [{ obsSets }, obsSetsStatus, obsSetsUrls, obsSetsError] = useObsSetsData(loaders, dataset, true, {}, {}, { obsType });
+    const [{ sampleIndex, sampleSets }, sampleSetsStatus, sampleSetsUrls, sampleSetsError,] = useSampleSetsData(loaders, dataset, 
     // TODO: support `false`, i.e., configurations in which
     // there are no sampleSets
     true, { setSampleSetColor }, { sampleSetColor }, { sampleType });
-    const [{ sampleEdges }, sampleEdgesStatus, sampleEdgesUrls] = useSampleEdgesData(loaders, dataset, 
+    const [{ sampleEdges }, sampleEdgesStatus, sampleEdgesUrls, sampleEdgesError,] = useSampleEdgesData(loaders, dataset, 
     // TODO: support `false`, i.e., configurations in which
     // there are no sampleEdges
     true, {}, {}, { obsType, sampleType });
+    const errors = [
+        matrixIndicesError,
+        obsSetsError,
+        sampleSetsError,
+        sampleEdgesError,
+    ];
     const isReady = useReady([
         matrixIndicesStatus,
         obsSetsStatus,
@@ -108,5 +114,5 @@ export function TreemapSubscriber(props) {
     const onNodeClick = useCallback((obsSetPath) => {
         setObsSetSelection([obsSetPath]);
     }, [setObsSetSelection]);
-    return (_jsxs(TitleInfo, { title: `Treemap of ${capitalize(plur(obsType, 2))}`, info: `${commaNumber(selectedObsCount)} ${plur(obsType, selectedObsCount)} from ${commaNumber(selectedSampleCount)} ${plur(sampleType, selectedSampleCount)}`, removeGridComponent: removeGridComponent, urls: urls, theme: theme, isReady: isReady, helpText: helpText, withPadding: false, options: (_jsx(TreemapOptions, { obsType: obsType, sampleType: sampleType, obsColorEncoding: obsColorEncoding, setObsColorEncoding: setObsColorEncoding, hierarchyLevels: hierarchyLevels || DEFAULT_HIERARCHY_LEVELS, setHierarchyLevels: setHierarchyLevels })), children: [_jsx("div", { ref: containerRef, className: classes.vegaContainer, children: _jsx(Treemap, { obsCounts: obsCounts, sampleCounts: sampleCounts, obsColorEncoding: obsColorEncoding, hierarchyLevels: hierarchyLevels || DEFAULT_HIERARCHY_LEVELS, theme: theme, width: width, height: Math.max(height * (selectedObsCount / totalObsCount), 40), obsType: obsType, sampleType: sampleType, obsSetColor: obsSetColor, sampleSetColor: sampleSetColor, obsSetSelection: obsSetSelection, sampleSetSelection: sampleSetSelection, onNodeClick: onNodeClick }) }), _jsx("div", { style: { position: 'absolute', right: '2px', bottom: '2px', fontSize: '10px' }, children: unselectedObsCount > 0 ? (_jsx("span", { children: `${commaNumber(unselectedObsCount)} ${plur(obsType, unselectedObsCount)} from ${commaNumber(unselectedSampleCount)} ${plur(sampleType, unselectedSampleCount)} currently omitted` })) : null })] }));
+    return (_jsxs(TitleInfo, { title: `Treemap of ${capitalize(plur(obsType, 2))}`, info: `${commaNumber(selectedObsCount)} ${plur(obsType, selectedObsCount)} from ${commaNumber(selectedSampleCount)} ${plur(sampleType, selectedSampleCount)}`, removeGridComponent: removeGridComponent, urls: urls, theme: theme, isReady: isReady, helpText: helpText, errors: errors, withPadding: false, options: (_jsx(TreemapOptions, { obsType: obsType, sampleType: sampleType, obsColorEncoding: obsColorEncoding, setObsColorEncoding: setObsColorEncoding, hierarchyLevels: hierarchyLevels || DEFAULT_HIERARCHY_LEVELS, setHierarchyLevels: setHierarchyLevels })), children: [_jsx("div", { ref: containerRef, className: classes.vegaContainer, children: _jsx(Treemap, { obsCounts: obsCounts, sampleCounts: sampleCounts, obsColorEncoding: obsColorEncoding, hierarchyLevels: hierarchyLevels || DEFAULT_HIERARCHY_LEVELS, theme: theme, width: width, height: Math.max(height * (selectedObsCount / totalObsCount), 40), obsType: obsType, sampleType: sampleType, obsSetColor: obsSetColor, sampleSetColor: sampleSetColor, obsSetSelection: obsSetSelection, sampleSetSelection: sampleSetSelection, onNodeClick: onNodeClick }) }), _jsx("div", { style: { position: 'absolute', right: '2px', bottom: '2px', fontSize: '10px' }, children: unselectedObsCount > 0 ? (_jsx("span", { children: `${commaNumber(unselectedObsCount)} ${plur(obsType, unselectedObsCount)} from ${commaNumber(unselectedSampleCount)} ${plur(sampleType, unselectedSampleCount)} currently omitted` })) : null })] }));
 }

package/dist-tsc/VolcanoPlotSubscriber.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"VolcanoPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/VolcanoPlotSubscriber.js"],"names":[],"mappings":"AAuBA,+DA+IC"}
+{"version":3,"file":"VolcanoPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/VolcanoPlotSubscriber.js"],"names":[],"mappings":"AAuBA,+DA0JC"}

package/dist-tsc/VolcanoPlotSubscriber.js

@@ -22,14 +22,19 @@ export function VolcanoPlotSubscriber(props) {
     const sampleSetsColumnNameMappingReversed = useColumnNameMapping(sampleSetsLoader, true);
     const rawSampleSetSelection = useRawSetPaths(sampleSetsColumnNameMapping, sampleSetSelection);
     const rawObsSetSelection = useRawSetPaths(obsSetsColumnNameMapping, obsSetSelection);
-    const [{ featureStats }, featureStatsStatus] = useFeatureStatsData(loaders, dataset, false, { obsType, featureType, sampleType }, 
+    // Get data from loaders using the data hooks.
+    const [{ featureStats }, featureStatsStatus, featureStatsUrls, featureStatsError,] = useFeatureStatsData(loaders, dataset, false, { obsType, featureType, sampleType }, 
     // These volcanoOptions are passed to FeatureStatsAnndataLoader.loadMulti():
     { sampleSetSelection: rawSampleSetSelection, obsSetSelection: rawObsSetSelection });
+    // Consolidate error values from data hooks.
+    const errors = [
+        featureStatsError,
+    ];
     const isReady = useReady([
         featureStatsStatus,
     ]);
     const onFeatureClick = useCallback((featureId) => {
         setFeatureSelection([featureId]);
     }, [setFeatureSelection]);
-    return (_jsx(TitleInfo, { title: title, removeGridComponent: removeGridComponent, theme: theme, isReady: isReady, helpText: helpText, options: (_jsx(VolcanoPlotOptions, { obsType: obsType, featureType: featureType, featurePointSignificanceThreshold: featurePointSignificanceThreshold, featurePointFoldChangeThreshold: featurePointFoldChangeThreshold, featureLabelSignificanceThreshold: featureLabelSignificanceThreshold, featureLabelFoldChangeThreshold: featureLabelFoldChangeThreshold, setFeaturePointSignificanceThreshold: setFeaturePointSignificanceThreshold, setFeaturePointFoldChangeThreshold: setFeaturePointFoldChangeThreshold, setFeatureLabelSignificanceThreshold: setFeatureLabelSignificanceThreshold, setFeatureLabelFoldChangeThreshold: setFeatureLabelFoldChangeThreshold })), children: _jsx("div", { ref: containerRef, className: classes.vegaContainer, children: featureStats ? (_jsx(VolcanoPlot, { theme: theme, width: width, height: height, obsType: obsType, featureType: featureType, obsSetsColumnNameMapping: obsSetsColumnNameMapping, obsSetsColumnNameMappingReversed: obsSetsColumnNameMappingReversed, sampleSetsColumnNameMapping: sampleSetsColumnNameMapping, sampleSetsColumnNameMappingReversed: sampleSetsColumnNameMappingReversed, sampleSetSelection: sampleSetSelection, obsSetSelection: obsSetSelection, obsSetColor: obsSetColor, sampleSetColor: sampleSetColor, data: featureStats, onFeatureClick: onFeatureClick, featurePointSignificanceThreshold: featurePointSignificanceThreshold, featurePointFoldChangeThreshold: featurePointFoldChangeThreshold, featureLabelSignificanceThreshold: featureLabelSignificanceThreshold, featureLabelFoldChangeThreshold: featureLabelFoldChangeThreshold })) : (_jsxs("span", { children: ["Select at least one ", obsType, " set."] })) }) }));
+    return (_jsx(TitleInfo, { title: title, removeGridComponent: removeGridComponent, theme: theme, isReady: isReady, helpText: helpText, errors: errors, options: (_jsx(VolcanoPlotOptions, { obsType: obsType, featureType: featureType, featurePointSignificanceThreshold: featurePointSignificanceThreshold, featurePointFoldChangeThreshold: featurePointFoldChangeThreshold, featureLabelSignificanceThreshold: featureLabelSignificanceThreshold, featureLabelFoldChangeThreshold: featureLabelFoldChangeThreshold, setFeaturePointSignificanceThreshold: setFeaturePointSignificanceThreshold, setFeaturePointFoldChangeThreshold: setFeaturePointFoldChangeThreshold, setFeatureLabelSignificanceThreshold: setFeatureLabelSignificanceThreshold, setFeatureLabelFoldChangeThreshold: setFeatureLabelFoldChangeThreshold })), children: _jsx("div", { ref: containerRef, className: classes.vegaContainer, children: featureStats ? (_jsx(VolcanoPlot, { theme: theme, width: width, height: height, obsType: obsType, featureType: featureType, obsSetsColumnNameMapping: obsSetsColumnNameMapping, obsSetsColumnNameMappingReversed: obsSetsColumnNameMappingReversed, sampleSetsColumnNameMapping: sampleSetsColumnNameMapping, sampleSetsColumnNameMappingReversed: sampleSetsColumnNameMappingReversed, sampleSetSelection: sampleSetSelection, obsSetSelection: obsSetSelection, obsSetColor: obsSetColor, sampleSetColor: sampleSetColor, data: featureStats, onFeatureClick: onFeatureClick, featurePointSignificanceThreshold: featurePointSignificanceThreshold, featurePointFoldChangeThreshold: featurePointFoldChangeThreshold, featureLabelSignificanceThreshold: featureLabelSignificanceThreshold, featureLabelFoldChangeThreshold: featureLabelFoldChangeThreshold })) : (_jsxs("span", { children: ["Select at least one ", obsType, " set."] })) }) }));
 }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/statistical-plots",
-  "version": "3.6.6",
+  "version": "3.6.8",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -28,13 +28,13 @@
     "react-aria": "^3.28.0",
     "internmap": "^2.0.3",
     "uuid": "^9.0.0",
-    "@vitessce/styles": "3.6.6",
-    "@vitessce/constants-internal": "3.6.6",
-    "@vitessce/sets-utils": "3.6.6",
-    "@vitessce/utils": "3.6.6",
-    "@vitessce/vega": "3.6.6",
-    "@vitessce/vit-s": "3.6.6",
-    "@vitessce/gl": "3.6.6"
+    "@vitessce/styles": "3.6.8",
+    "@vitessce/constants-internal": "3.6.8",
+    "@vitessce/sets-utils": "3.6.8",
+    "@vitessce/utils": "3.6.8",
+    "@vitessce/vega": "3.6.8",
+    "@vitessce/vit-s": "3.6.8",
+    "@vitessce/gl": "3.6.8"
   },
   "devDependencies": {
     "react": "^18.0.0",

package/src/CellSetCompositionBarPlotSubscriber.js

@@ -1,5 +1,5 @@
 /* eslint-disable no-unused-vars */
-import React, { useMemo, useCallback } from 'react';
+import React, { useCallback } from 'react';
 import {
   TitleInfo,
   useCoordination,
@@ -95,13 +95,19 @@ export function CellSetCompositionBarPlotSubscriber(props) {
   const rawSampleSetSelection = useRawSetPaths(sampleSetsColumnNameMapping, sampleSetSelection);
   const rawObsSetSelection = useRawSetPaths(obsSetsColumnNameMapping, obsSetSelection);
 
-  const [{ obsSetStats }, obsSetStatsStatus] = useObsSetStatsData(
+  const [
+    { obsSetStats }, obsSetStatsStatus, obsSetStatsUrls, obsSetStatsError,
+  ] = useObsSetStatsData(
     loaders, dataset, false,
     { obsType, sampleType },
     // These volcanoOptions are passed to ObsSetStatsAnndataLoader.loadMulti():
     { sampleSetSelection: rawSampleSetSelection, obsSetSelection: rawObsSetSelection },
   );
 
+  const errors = [
+    obsSetStatsError,
+  ];
+
   const isReady = useReady([
     obsSetStatsStatus,
   ]);
@@ -123,6 +129,7 @@ export function CellSetCompositionBarPlotSubscriber(props) {
       theme={theme}
       isReady={isReady}
       helpText={helpText}
+      errors={errors}
     >
       <div ref={containerRef} className={classes.vegaContainer}>
         {obsSetStats ? (

package/src/CellSetExpressionPlotSubscriber.js

@@ -179,41 +179,62 @@ export function CellSetExpressionPlotSubscriber(props) {
   const transformOptions = VALUE_TRANSFORM_OPTIONS;
 
   // Get data from loaders using the data hooks.
-  // eslint-disable-next-line no-unused-vars
-  const [expressionData, loadedFeatureSelection, featureSelectionStatus] = useFeatureSelection(
+  const [
+    // eslint-disable-next-line no-unused-vars
+    expressionData, loadedFeatureSelection, featureSelectionStatus, featureSelectionErrors,
+  ] = useFeatureSelection(
     loaders, dataset, false, geneSelection,
     { obsType, featureType, featureValueType },
   );
   // TODO: support multiple feature labels using featureLabelsType coordination values.
-  // eslint-disable-next-line max-len
-  const [{ featureLabelsMap: featureLabelsMapOrig }, featureLabelsStatus, featureLabelsUrls] = useFeatureLabelsData(
+  const [
+    { featureLabelsMap: featureLabelsMapOrig },
+    featureLabelsStatus,
+    featureLabelsUrls,
+    featureLabelsError,
+  ] = useFeatureLabelsData(
     loaders, dataset, false, {}, {},
     { featureType },
   );
   const [featureLabelsMap, expandedFeatureLabelsStatus] = useExpandedFeatureLabelsMap(
     featureType, featureLabelsMapOrig, { stripCuriePrefixes: true },
   );
-  const [{ obsIndex }, matrixIndicesStatus, matrixIndicesUrls] = useObsFeatureMatrixIndices(
+  const [
+    { obsIndex }, matrixIndicesStatus, matrixIndicesUrls, matrixIndicesError,
+  ] = useObsFeatureMatrixIndices(
     loaders, dataset, false,
     { obsType, featureType, featureValueType },
   );
-  const [{ obsSets: cellSets }, obsSetsStatus, obsSetsUrls] = useObsSetsData(
+  const [{ obsSets: cellSets }, obsSetsStatus, obsSetsUrls, obsSetsError] = useObsSetsData(
     loaders, dataset, true, {}, {},
     { obsType },
   );
 
-  const [{ sampleSets }, sampleSetsStatus, sampleSetsUrls] = useSampleSetsData(
+  const [
+    { sampleSets }, sampleSetsStatus, sampleSetsUrls, sampleSetsError,
+  ] = useSampleSetsData(
     loaders, dataset, false,
     { setSampleSetColor },
     { sampleSetColor },
     { sampleType },
   );
 
-  const [{ sampleEdges }, sampleEdgesStatus, sampleEdgesUrls] = useSampleEdgesData(
+  const [
+    { sampleEdges }, sampleEdgesStatus, sampleEdgesUrls, sampleEdgesError,
+  ] = useSampleEdgesData(
     loaders, dataset, false, {}, {},
     { obsType, sampleType },
   );
 
+  const errors = [
+    ...featureSelectionErrors,
+    featureLabelsError,
+    matrixIndicesError,
+    obsSetsError,
+    sampleSetsError,
+    sampleEdgesError,
+  ];
+
   const isReady = useReady([
     featureSelectionStatus,
     matrixIndicesStatus,
@@ -273,6 +294,7 @@ export function CellSetExpressionPlotSubscriber(props) {
       theme={theme}
       isReady={isReady}
       helpText={helpText}
+      errors={errors}
       options={(
         <CellSetExpressionPlotOptions
           featureValueTransform={featureValueTransform}

package/src/CellSetSizesPlotSubscriber.js

@@ -63,12 +63,15 @@ export function CellSetSizesPlotSubscriber(props) {
   const [prevCellSetSelection, setPrevCellSetSelection] = useState([]);
 
   // Get data from loaders using the data hooks.
-  const [{ obsSets: cellSets }, obsSetsStatus, obsSetsUrls] = useObsSetsData(
+  const [{ obsSets: cellSets }, obsSetsStatus, obsSetsUrls, obsSetsError] = useObsSetsData(
     loaders, dataset, true,
     { setObsSetSelection: setCellSetSelection, setObsSetColor: setCellSetColor },
     { obsSetSelection: cellSetSelection, obsSetColor: cellSetColor },
     { obsType },
   );
+  const errors = [
+    obsSetsError,
+  ];
   const isReady = useReady([obsSetsStatus]);
   const urls = useUrls([obsSetsUrls]);
 
@@ -139,6 +142,7 @@ export function CellSetSizesPlotSubscriber(props) {
       theme={theme}
       isReady={isReady}
       helpText={helpText}
+      errors={errors}
     >
       <div ref={containerRef} className={classes.vegaContainer}>
         <CellSetSizesPlot