@vitessce/statistical-plots 3.6.16 → 3.6.18
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/{deflate-CWzHkMt8.js → deflate-DaFHdnIz.js} +1 -1
- package/dist/{index-jTgzybKh.js → index-C8VlTSXb.js} +28 -18
- package/dist/index.js +1 -1
- package/dist/{jpeg-CKLZ6Ujk.js → jpeg-DI6r1Qu1.js} +1 -1
- package/dist/{lerc-Bg8_SUgD.js → lerc-CSlbF9fX.js} +1 -1
- package/dist/{lzw-BeELIhvX.js → lzw-H16ZlUv0.js} +1 -1
- package/dist/{packbits-Dt1MSk9z.js → packbits-3-1YYdxN.js} +1 -1
- package/dist/{raw-DDZdro0w.js → raw-BjsOfrZJ.js} +1 -1
- package/dist/{webimage-rE8shGdx.js → webimage-U9BOPX4n.js} +1 -1
- package/dist-tsc/CellSetCompositionBarPlotSubscriber.d.ts.map +1 -1
- package/dist-tsc/CellSetCompositionBarPlotSubscriber.js +3 -2
- package/dist-tsc/CellSetExpressionPlotSubscriber.d.ts.map +1 -1
- package/dist-tsc/CellSetExpressionPlotSubscriber.js +3 -2
- package/dist-tsc/CellSetSizesPlotSubscriber.d.ts.map +1 -1
- package/dist-tsc/CellSetSizesPlotSubscriber.js +3 -2
- package/dist-tsc/DotPlotSubscriber.d.ts.map +1 -1
- package/dist-tsc/DotPlotSubscriber.js +3 -2
- package/dist-tsc/ExpressionHistogramSubscriber.d.ts.map +1 -1
- package/dist-tsc/ExpressionHistogramSubscriber.js +3 -2
- package/dist-tsc/FeatureBarPlotSubscriber.d.ts.map +1 -1
- package/dist-tsc/FeatureBarPlotSubscriber.js +3 -2
- package/dist-tsc/FeatureSetEnrichmentBarPlotSubscriber.d.ts.map +1 -1
- package/dist-tsc/FeatureSetEnrichmentBarPlotSubscriber.js +3 -2
- package/dist-tsc/FeatureStatsTableSubscriber.d.ts.map +1 -1
- package/dist-tsc/FeatureStatsTableSubscriber.js +3 -2
- package/dist-tsc/TreemapSubscriber.d.ts.map +1 -1
- package/dist-tsc/TreemapSubscriber.js +3 -2
- package/dist-tsc/VolcanoPlotSubscriber.d.ts.map +1 -1
- package/dist-tsc/VolcanoPlotSubscriber.js +3 -2
- package/package.json +8 -8
- package/src/CellSetCompositionBarPlotSubscriber.js +3 -1
- package/src/CellSetExpressionPlotSubscriber.js +3 -1
- package/src/CellSetSizesPlotSubscriber.js +3 -1
- package/src/DotPlotSubscriber.js +3 -1
- package/src/ExpressionHistogramSubscriber.js +3 -1
- package/src/FeatureBarPlotSubscriber.js +3 -1
- package/src/FeatureSetEnrichmentBarPlotSubscriber.js +3 -1
- package/src/FeatureStatsTableSubscriber.js +3 -1
- package/src/TreemapSubscriber.js +3 -1
- package/src/VolcanoPlotSubscriber.js +3 -1
@@ -1,5 +1,5 @@
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import { i as inflate_1 } from "./pako.esm-SxljTded.js";
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import { B as BaseDecoder } from "./index-
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import { B as BaseDecoder } from "./index-C8VlTSXb.js";
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class DeflateDecoder extends BaseDecoder {
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decodeBlock(buffer) {
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return inflate_1(new Uint8Array(buffer)).buffer;
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@@ -4,7 +4,7 @@ var __publicField = (obj, key2, value2) => __defNormalProp(obj, typeof key2 !==
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var _a2, _b;
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import * as React from "react";
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import React__default, { useState, useContext, useRef, useCallback, useEffect, forwardRef as forwardRef$1, useMemo, createContext, createElement, isValidElement, cloneElement, Children, Suspense } from "react";
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import { usePlotOptionsStyles, OptionsContainer, OptionSelect, useLoaders, useCoordination, useGridItemSize, useFeatureSelection, useFeatureLabelsData, useExpandedFeatureLabelsMap, useObsFeatureMatrixIndices, useObsSetsData, useSampleSetsData, useSampleEdgesData, useReady, useUrls, TitleInfo, useObsFeatureMatrixData, useMatchingLoader, useColumnNameMapping, useFeatureStatsData, useObsSetStatsData, useAsyncFunction, useFeatureSetStatsData } from "@vitessce/vit-s";
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import { usePlotOptionsStyles, OptionsContainer, OptionSelect, useLoaders, useCoordinationScopes, useCoordination, useGridItemSize, useFeatureSelection, useFeatureLabelsData, useExpandedFeatureLabelsMap, useObsFeatureMatrixIndices, useObsSetsData, useSampleSetsData, useSampleEdgesData, useReady, useUrls, TitleInfo, useObsFeatureMatrixData, useMatchingLoader, useColumnNameMapping, useFeatureStatsData, useObsSetStatsData, useAsyncFunction, useFeatureSetStatsData } from "@vitessce/vit-s";
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import * as ReactDOM from "react-dom";
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import ReactDOM__default from "react-dom";
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function _mergeNamespaces(n2, m2) {
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}
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cases2.forEach((c2) => registry$1.set(c2, importFn));
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}
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addDecoder([void 0, 1], () => import("./raw-
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addDecoder(5, () => import("./lzw-
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addDecoder([void 0, 1], () => import("./raw-BjsOfrZJ.js").then((m2) => m2.default));
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addDecoder(5, () => import("./lzw-H16ZlUv0.js").then((m2) => m2.default));
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addDecoder(6, () => {
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throw new Error("old style JPEG compression is not supported.");
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});
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addDecoder(7, () => import("./jpeg-
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addDecoder([8, 32946], () => import("./deflate-
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addDecoder(32773, () => import("./packbits-
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addDecoder(7, () => import("./jpeg-DI6r1Qu1.js").then((m2) => m2.default));
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addDecoder([8, 32946], () => import("./deflate-DaFHdnIz.js").then((m2) => m2.default));
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addDecoder(32773, () => import("./packbits-3-1YYdxN.js").then((m2) => m2.default));
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addDecoder(
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34887,
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() => import("./lerc-
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() => import("./lerc-CSlbF9fX.js").then(async (m2) => {
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await m2.zstd.init();
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return m2;
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}).then((m2) => m2.default)
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);
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addDecoder(50001, () => import("./webimage-
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addDecoder(50001, () => import("./webimage-U9BOPX4n.js").then((m2) => m2.default));
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function decodeRowAcc(row, stride) {
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let length2 = row.length - stride;
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let offset2 = 0;
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@@ -198745,7 +198745,7 @@ function useExpressionByCellSet(sampleEdges, sampleSets, sampleSetSelection, exp
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function CellSetExpressionPlotSubscriber(props) {
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var _a3;
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const {
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coordinationScopes,
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coordinationScopes: coordinationScopesRaw,
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closeButtonVisible,
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downloadButtonVisible,
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removeGridComponent,
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} = props;
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const { classes: classes2 } = useStyles$1();
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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const [{
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dataset,
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obsType,
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@@ -249852,7 +249853,7 @@ function CellSetSizesPlot(props) {
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}
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function CellSetSizesPlotSubscriber(props) {
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const {
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coordinationScopes,
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coordinationScopes: coordinationScopesRaw,
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closeButtonVisible,
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downloadButtonVisible,
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removeGridComponent,
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} = props;
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const { classes: classes2 } = useStyles$1();
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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const [{
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dataset,
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obsType,
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@@ -250042,7 +250044,7 @@ function ExpressionHistogram(props) {
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}
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function ExpressionHistogramSubscriber(props) {
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const {
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coordinationScopes,
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coordinationScopes: coordinationScopesRaw,
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closeButtonVisible,
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downloadButtonVisible,
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removeGridComponent,
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@@ -250051,6 +250053,7 @@ function ExpressionHistogramSubscriber(props) {
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} = props;
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const { classes: classes2 } = useStyles$1();
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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const [{
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dataset,
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obsType,
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@@ -250444,7 +250447,7 @@ function useExpressionSummaries(sampleEdges, sampleSets, sampleSetSelection, exp
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function DotPlotSubscriber(props) {
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var _a3;
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const {
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coordinationScopes,
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coordinationScopes: coordinationScopesRaw,
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removeGridComponent,
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theme,
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title: title2 = "Dot Plot",
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} = props;
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const { classes: classes2 } = useStyles$1();
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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const [{
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dataset,
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obsType,
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@@ -250795,7 +250799,7 @@ function FeatureBarPlot(props) {
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}
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function FeatureBarPlotSubscriber(props) {
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const {
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coordinationScopes,
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coordinationScopes: coordinationScopesRaw,
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removeGridComponent,
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theme,
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yMin = 0,
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} = props;
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const { classes: classes2 } = useStyles$1();
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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const [{
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@@ -251178,13 +251183,14 @@ function TreemapOptions(props) {
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const DEFAULT_HIERARCHY_LEVELS = ["obsSet", "sampleSet"];
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function TreemapSubscriber(props) {
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const {
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coordinationScopes: coordinationScopesRaw,
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removeGridComponent,
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theme,
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helpText = ViewHelpMapping.TREEMAP
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} = props;
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const { classes: classes2 } = useStyles$1();
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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const [{
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@@ -251683,13 +251689,14 @@ function VolcanoPlotOptions(props) {
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function VolcanoPlotSubscriber(props) {
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const {
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title: title2 = "Volcano Plot",
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coordinationScopes: coordinationScopesRaw,
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helpText = ViewHelpMapping.VOLCANO_PLOT
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} = props;
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const { classes: classes2 } = useStyles$1();
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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const [{
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function CellSetCompositionBarPlotSubscriber(props) {
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const {
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coordinationScopes: coordinationScopesRaw,
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helpText = ViewHelpMapping.OBS_SET_COMPOSITION_BAR_PLOT
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} = props;
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const { classes: classes2 } = useStyles$1();
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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const [{
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function FeatureSetEnrichmentBarPlotSubscriber(props) {
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const {
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coordinationScopes: coordinationScopesRaw,
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helpText = ViewHelpMapping.FEATURE_SET_ENRICHMENT_BAR_PLOT
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} = props;
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const { classes: classes2 } = useStyles$1();
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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const transformFeature = useAsyncFunction(AsyncFunctionType.TRANSFORM_FEATURE);
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const [{
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function FeatureStatsTableSubscriber(props) {
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title: title2 = "Differential Expression Results",
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helpText = ViewHelpMapping.FEATURE_STATS_TABLE
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} = props;
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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const [{
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package/dist/index.js
CHANGED
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import { i as inflate_1 } from "./pako.esm-SxljTded.js";
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import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-
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import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-C8VlTSXb.js";
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const LercParameters = {
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};
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{"version":3,"file":"CellSetCompositionBarPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/CellSetCompositionBarPlotSubscriber.js"],"names":[],"mappings":"
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{"version":3,"file":"CellSetCompositionBarPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/CellSetCompositionBarPlotSubscriber.js"],"names":[],"mappings":"AAyBA,6EAsIC"}
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import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
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/* eslint-disable no-unused-vars */
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import React, { useCallback } from 'react';
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import { TitleInfo, useCoordination, useLoaders, useReady, useGridItemSize, useObsSetStatsData, useMatchingLoader, useColumnNameMapping, } from '@vitessce/vit-s';
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import { TitleInfo, useCoordination, useLoaders, useReady, useGridItemSize, useObsSetStatsData, useMatchingLoader, useColumnNameMapping, useCoordinationScopes, } from '@vitessce/vit-s';
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import { ViewType, COMPONENT_COORDINATION_TYPES, ViewHelpMapping, DataType, } from '@vitessce/constants-internal';
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import { capitalize } from '@vitessce/utils';
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import CellSetCompositionBarPlot from './CellSetCompositionBarPlot.js';
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import { useStyles } from './styles.js';
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import { useRawSetPaths } from './utils.js';
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export function CellSetCompositionBarPlotSubscriber(props) {
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const { coordinationScopes, removeGridComponent, theme, helpText = ViewHelpMapping.OBS_SET_COMPOSITION_BAR_PLOT, } = props;
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const { coordinationScopes: coordinationScopesRaw, removeGridComponent, theme, helpText = ViewHelpMapping.OBS_SET_COMPOSITION_BAR_PLOT, } = props;
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const { classes } = useStyles();
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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// Get "props" from the coordination space.
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const [{ dataset, obsType, sampleType, featureType, featureValueType, obsFilter: cellFilter, obsHighlight: cellHighlight, obsSetSelection, obsSetColor, obsColorEncoding: cellColorEncoding, additionalObsSets: additionalCellSets, featurePointSignificanceThreshold, featurePointFoldChangeThreshold, featureLabelSignificanceThreshold, featureLabelFoldChangeThreshold, featureValueTransform, featureValueTransformCoefficient, gatingFeatureSelectionX, gatingFeatureSelectionY, featureSelection, sampleSetSelection, sampleSetColor, }, { setObsFilter: setCellFilter, setObsSetSelection, setObsHighlight: setCellHighlight, setObsSetColor: setCellSetColor, setObsColorEncoding: setCellColorEncoding, setAdditionalObsSets: setAdditionalCellSets, setFeaturePointSignificanceThreshold, setFeaturePointFoldChangeThreshold, setFeatureLabelSignificanceThreshold, setFeatureLabelFoldChangeThreshold, setFeatureValueTransform, setFeatureValueTransformCoefficient, setGatingFeatureSelectionX, setGatingFeatureSelectionY, setFeatureSelection, setSampleSetSelection, setSampleSetColor, }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType.OBS_SET_COMPOSITION_BAR_PLOT], coordinationScopes);
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const [width, height, containerRef] = useGridItemSize();
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{"version":3,"file":"CellSetExpressionPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/CellSetExpressionPlotSubscriber.js"],"names":[],"mappings":"
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{"version":3,"file":"CellSetExpressionPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/CellSetExpressionPlotSubscriber.js"],"names":[],"mappings":"AA2HA;;;;;;;;;GASG;AACH,uDALG;IAAwB,mBAAmB;IACrB,kBAAkB,EAAhC,MAAM;IAEQ,KAAK,EAAnB,MAAM;CAChB,eA+MA"}
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import React, { useMemo } from 'react';
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import { TitleInfo, useCoordination, useLoaders, useUrls, useReady, useGridItemSize, useFeatureSelection, useObsSetsData, useObsFeatureMatrixIndices, useFeatureLabelsData, useSampleSetsData, useSampleEdgesData, useExpandedFeatureLabelsMap, } from '@vitessce/vit-s';
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import { TitleInfo, useCoordination, useLoaders, useUrls, useReady, useGridItemSize, useFeatureSelection, useObsSetsData, useObsFeatureMatrixIndices, useFeatureLabelsData, useSampleSetsData, useSampleEdgesData, useExpandedFeatureLabelsMap, useCoordinationScopes, } from '@vitessce/vit-s';
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import { ViewType, COMPONENT_COORDINATION_TYPES, ViewHelpMapping } from '@vitessce/constants-internal';
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import { VALUE_TRANSFORM_OPTIONS, capitalize, cleanFeatureId } from '@vitessce/utils';
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import { treeToSetSizesBySetNames, mergeObsSets, stratifyExpressionData, aggregateStratifiedExpressionData, } from '@vitessce/sets-utils';
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* @param {string} props.theme The name of the current Vitessce theme.
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export function CellSetExpressionPlotSubscriber(props) {
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const { coordinationScopes, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, title, xAxisTitle, jitter = false, yMin = null, yUnits = null, helpText = ViewHelpMapping.OBS_SET_FEATURE_VALUE_DISTRIBUTION, } = props;
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const { coordinationScopes: coordinationScopesRaw, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, title, xAxisTitle, jitter = false, yMin = null, yUnits = null, helpText = ViewHelpMapping.OBS_SET_FEATURE_VALUE_DISTRIBUTION, } = props;
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const { classes } = useStyles();
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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// Get "props" from the coordination space.
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const [{ dataset, obsType, featureType, featureValueType, featureSelection: geneSelection, featureValueTransform, featureValueTransformCoefficient, obsSetSelection: cellSetSelection, obsSetColor: cellSetColor, additionalObsSets: additionalCellSets, sampleType, sampleSetSelection, sampleSetColor, featureAggregationStrategy, }, { setFeatureValueTransform, setFeatureValueTransformCoefficient, setSampleSetColor, setFeatureAggregationStrategy, }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType.OBS_SET_FEATURE_VALUE_DISTRIBUTION], coordinationScopes);
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const [width, height, containerRef] = useGridItemSize();
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{"version":3,"file":"CellSetSizesPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/CellSetSizesPlotSubscriber.js"],"names":[],"mappings":"
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{"version":3,"file":"CellSetSizesPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/CellSetSizesPlotSubscriber.js"],"names":[],"mappings":"AAiBA;;;;;;;;;;GAUG;AACH,kDANG;IAAwB,mBAAmB;IACnB,OAAO;IAET,KAAK,EAAnB,MAAM;IACQ,KAAK,EAAnB,MAAM;CAChB,eAqIA"}
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import { jsx as _jsx } from "react/jsx-runtime";
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import React, { useMemo, useState } from 'react';
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import { TitleInfo, useCoordination, useLoaders, useUrls, useReady, useGridItemSize, useObsSetsData, } from '@vitessce/vit-s';
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import { TitleInfo, useCoordination, useLoaders, useUrls, useReady, useGridItemSize, useObsSetsData, useCoordinationScopes, } from '@vitessce/vit-s';
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import { isEqual } from 'lodash-es';
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import { ViewType, COMPONENT_COORDINATION_TYPES, ViewHelpMapping } from '@vitessce/constants-internal';
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import { mergeObsSets, treeToSetSizesBySetNames, filterPathsByExpansionAndSelection, findChangedHierarchy, } from '@vitessce/sets-utils';
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* @param {string} props.title The component title.
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*/
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export function CellSetSizesPlotSubscriber(props) {
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const { coordinationScopes, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, title: titleOverride, helpText = ViewHelpMapping.OBS_SET_SIZES, } = props;
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const { coordinationScopes: coordinationScopesRaw, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, title: titleOverride, helpText = ViewHelpMapping.OBS_SET_SIZES, } = props;
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const { classes } = useStyles();
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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// Get "props" from the coordination space.
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const [{ dataset, obsType, obsSetSelection: cellSetSelection, obsSetColor: cellSetColor, additionalObsSets: additionalCellSets, obsSetExpansion: cellSetExpansion, }, { setObsSetSelection: setCellSetSelection, setObsSetColor: setCellSetColor, }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType.OBS_SET_SIZES], coordinationScopes);
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const title = titleOverride || `${capitalize(obsType)} Set Sizes`;
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{"version":3,"file":"DotPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/DotPlotSubscriber.js"],"names":[],"mappings":"
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{"version":3,"file":"DotPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/DotPlotSubscriber.js"],"names":[],"mappings":"AAoBA;;;;;;;GAOG;AACH,yCALG;IAAwB,mBAAmB;IACrB,kBAAkB,EAAhC,MAAM;IAEQ,KAAK,EAAnB,MAAM;CAChB,eA4LA"}
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import { TitleInfo, useCoordination, useLoaders, useUrls, useReady, useGridItemSize, useFeatureSelection, useObsSetsData, useObsFeatureMatrixIndices, useFeatureLabelsData, useSampleSetsData, useSampleEdgesData, } from '@vitessce/vit-s';
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import { TitleInfo, useCoordination, useLoaders, useUrls, useReady, useGridItemSize, useFeatureSelection, useObsSetsData, useObsFeatureMatrixIndices, useFeatureLabelsData, useSampleSetsData, useSampleEdgesData, useCoordinationScopes, } from '@vitessce/vit-s';
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import { ViewType, COMPONENT_COORDINATION_TYPES, ViewHelpMapping } from '@vitessce/constants-internal';
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import { VALUE_TRANSFORM_OPTIONS } from '@vitessce/utils';
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import CellSetExpressionPlotOptions from './CellSetExpressionPlotOptions.js';
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@@ -16,9 +16,10 @@ import { useExpressionSummaries } from './dot-plot-hook.js';
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* @param {string} props.theme The name of the current Vitessce theme.
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*/
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export function DotPlotSubscriber(props) {
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const { coordinationScopes, removeGridComponent, theme, title = 'Dot Plot', transpose = true, helpText = ViewHelpMapping.DOT_PLOT, } = props;
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const { coordinationScopes: coordinationScopesRaw, removeGridComponent, theme, title = 'Dot Plot', transpose = true, helpText = ViewHelpMapping.DOT_PLOT, } = props;
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const { classes } = useStyles();
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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// Get "props" from the coordination space.
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const [{ dataset, obsType, featureType, featureValueType, featureSelection: geneSelection, featureValueTransform, featureValueTransformCoefficient, featureValuePositivityThreshold: posThreshold, featureValueColormap, obsSetSelection: cellSetSelection, obsSetColor: cellSetColor, additionalObsSets: additionalCellSets, sampleType, sampleSetSelection,
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// eslint-disable-next-line no-unused-vars
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{"version":3,"file":"ExpressionHistogramSubscriber.d.ts","sourceRoot":"","sources":["../src/ExpressionHistogramSubscriber.js"],"names":[],"mappings":"
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{"version":3,"file":"ExpressionHistogramSubscriber.d.ts","sourceRoot":"","sources":["../src/ExpressionHistogramSubscriber.js"],"names":[],"mappings":"AAeA;;;;;;;;;GASG;AACH,qDALG;IAAwB,mBAAmB;IACrB,kBAAkB,EAAhC,MAAM;IAEQ,KAAK,EAAnB,MAAM;CAChB,eAuIA"}
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import { jsx as _jsx } from "react/jsx-runtime";
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import React, { useMemo, useCallback, } from 'react';
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import { sum } from 'd3-array';
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import { TitleInfo, useCoordination, useLoaders, useUrls, useReady, useGridItemSize, useObsFeatureMatrixData, useFeatureSelection, } from '@vitessce/vit-s';
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import { TitleInfo, useCoordination, useLoaders, useUrls, useReady, useGridItemSize, useObsFeatureMatrixData, useFeatureSelection, useCoordinationScopes, } from '@vitessce/vit-s';
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import { ViewType, COMPONENT_COORDINATION_TYPES, ViewHelpMapping } from '@vitessce/constants-internal';
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import { setObsSelection, getObsInfoFromDataWithinRange } from '@vitessce/sets-utils';
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import ExpressionHistogram from './ExpressionHistogram.js';
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export function ExpressionHistogramSubscriber(props) {
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const { coordinationScopes, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, helpText = ViewHelpMapping.FEATURE_VALUE_HISTOGRAM, } = props;
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const { coordinationScopes: coordinationScopesRaw, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, helpText = ViewHelpMapping.FEATURE_VALUE_HISTOGRAM, } = props;
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const { classes } = useStyles();
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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// Get "props" from the coordination space.
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const [{ dataset, obsType, featureType, featureValueType, featureSelection: geneSelection, additionalObsSets: additionalCellSets, obsSetColor: cellSetColor, }, { setAdditionalObsSets: setAdditionalCellSets, setObsSetColor: setCellSetColor, setObsColorEncoding: setCellColorEncoding, setObsSetSelection: setCellSetSelection, }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType.FEATURE_VALUE_HISTOGRAM], coordinationScopes);
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const [width, height, containerRef] = useGridItemSize();
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{"version":3,"file":"FeatureBarPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/FeatureBarPlotSubscriber.js"],"names":[],"mappings":"
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{"version":3,"file":"FeatureBarPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/FeatureBarPlotSubscriber.js"],"names":[],"mappings":"AAmBA,kEAwJC"}
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import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
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import React, { useMemo, useCallback } from 'react';
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import { TitleInfo, useCoordination, useLoaders, useUrls, useReady, useGridItemSize, useFeatureSelection, useObsFeatureMatrixIndices, useFeatureLabelsData, } from '@vitessce/vit-s';
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import { TitleInfo, useCoordination, useLoaders, useUrls, useReady, useGridItemSize, useFeatureSelection, useObsFeatureMatrixIndices, useFeatureLabelsData, useCoordinationScopes, } from '@vitessce/vit-s';
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import { ViewType, COMPONENT_COORDINATION_TYPES, ViewHelpMapping } from '@vitessce/constants-internal';
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import { setObsSelection } from '@vitessce/sets-utils';
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import FeatureBarPlot from './FeatureBarPlot.js';
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export function FeatureBarPlotSubscriber(props) {
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const { coordinationScopes, removeGridComponent, theme, yMin = 0, yUnits = null, helpText = ViewHelpMapping.FEATURE_BAR_PLOT, } = props;
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const { coordinationScopes: coordinationScopesRaw, removeGridComponent, theme, yMin = 0, yUnits = null, helpText = ViewHelpMapping.FEATURE_BAR_PLOT, } = props;
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const { classes } = useStyles();
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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// Get "props" from the coordination space.
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const [{ dataset, obsType, featureType, featureValueType, featureSelection: geneSelection, featureValueTransform, featureValueTransformCoefficient, obsHighlight: cellHighlight, additionalObsSets: additionalCellSets, obsSetSelection: cellSetSelection, obsSetColor: cellSetColor, }, { setObsSetSelection: setCellSetSelection, setObsHighlight: setCellHighlight, setObsSetColor: setCellSetColor, setObsColorEncoding: setCellColorEncoding, setAdditionalObsSets: setAdditionalCellSets, }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType.FEATURE_BAR_PLOT], coordinationScopes);
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// console.log("BarPlot: " + cellHighlight)
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{"version":3,"file":"FeatureSetEnrichmentBarPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/FeatureSetEnrichmentBarPlotSubscriber.js"],"names":[],"mappings":"
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{"version":3,"file":"FeatureSetEnrichmentBarPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/FeatureSetEnrichmentBarPlotSubscriber.js"],"names":[],"mappings":"AA2BA,+EAsJC"}
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import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
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import { TitleInfo, useCoordination, useLoaders, useReady, useGridItemSize, useFeatureSetStatsData, useMatchingLoader, useColumnNameMapping, useAsyncFunction, } from '@vitessce/vit-s';
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import { TitleInfo, useCoordination, useLoaders, useReady, useGridItemSize, useFeatureSetStatsData, useMatchingLoader, useColumnNameMapping, useAsyncFunction, useCoordinationScopes, } from '@vitessce/vit-s';
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import { ViewType, COMPONENT_COORDINATION_TYPES, ViewHelpMapping, DataType, AsyncFunctionType, } from '@vitessce/constants-internal';
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import { capitalize } from '@vitessce/utils';
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import FeatureSetEnrichmentBarPlot from './FeatureSetEnrichmentBarPlot.js';
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import { useStyles } from './styles.js';
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import { useRawSetPaths } from './utils.js';
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export function FeatureSetEnrichmentBarPlotSubscriber(props) {
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const { coordinationScopes, removeGridComponent, theme, helpText = ViewHelpMapping.FEATURE_SET_ENRICHMENT_BAR_PLOT, } = props;
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const { coordinationScopes: coordinationScopesRaw, removeGridComponent, theme, helpText = ViewHelpMapping.FEATURE_SET_ENRICHMENT_BAR_PLOT, } = props;
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const { classes } = useStyles();
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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const transformFeature = useAsyncFunction(AsyncFunctionType.TRANSFORM_FEATURE);
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// Get "props" from the coordination space.
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const [{ dataset, obsType, sampleType, featureType, featureValueType, obsFilter: cellFilter, obsHighlight: cellHighlight, obsSetSelection, obsSetColor, obsColorEncoding: cellColorEncoding, additionalObsSets: additionalCellSets, featurePointSignificanceThreshold, featurePointFoldChangeThreshold, featureLabelSignificanceThreshold, featureLabelFoldChangeThreshold, featureValueTransform, featureValueTransformCoefficient, gatingFeatureSelectionX, gatingFeatureSelectionY, featureSelection, sampleSetSelection, sampleSetColor, }, { setObsFilter: setCellFilter, setObsSetSelection, setObsHighlight: setCellHighlight, setObsSetColor: setCellSetColor, setObsColorEncoding: setCellColorEncoding, setAdditionalObsSets: setAdditionalCellSets, setFeaturePointSignificanceThreshold, setFeaturePointFoldChangeThreshold, setFeatureLabelSignificanceThreshold, setFeatureLabelFoldChangeThreshold, setFeatureValueTransform, setFeatureValueTransformCoefficient, setGatingFeatureSelectionX, setGatingFeatureSelectionY, setFeatureSelection, setSampleSetSelection, setSampleSetColor, }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType.FEATURE_SET_ENRICHMENT_BAR_PLOT], coordinationScopes);
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{"version":3,"file":"FeatureStatsTableSubscriber.d.ts","sourceRoot":"","sources":["../src/FeatureStatsTableSubscriber.js"],"names":[],"mappings":"
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{"version":3,"file":"FeatureStatsTableSubscriber.d.ts","sourceRoot":"","sources":["../src/FeatureStatsTableSubscriber.js"],"names":[],"mappings":"AAqBA,qEAwHC"}
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import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
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/* eslint-disable no-unused-vars */
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import React from 'react';
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import { TitleInfo, useCoordination, useLoaders, useReady, useFeatureStatsData, useMatchingLoader, useColumnNameMapping, } from '@vitessce/vit-s';
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import { TitleInfo, useCoordination, useLoaders, useReady, useFeatureStatsData, useMatchingLoader, useColumnNameMapping, useCoordinationScopes, } from '@vitessce/vit-s';
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import { ViewType, COMPONENT_COORDINATION_TYPES, ViewHelpMapping, DataType, } from '@vitessce/constants-internal';
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import FeatureStatsTable from './FeatureStatsTable.js';
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import { useRawSetPaths } from './utils.js';
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export function FeatureStatsTableSubscriber(props) {
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const { title = 'Differential Expression Results', coordinationScopes, removeGridComponent, theme, helpText = ViewHelpMapping.FEATURE_STATS_TABLE, } = props;
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const { title = 'Differential Expression Results', coordinationScopes: coordinationScopesRaw, removeGridComponent, theme, helpText = ViewHelpMapping.FEATURE_STATS_TABLE, } = props;
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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// Get "props" from the coordination space.
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const [{ dataset, obsType, sampleType, featureType, featureValueType, obsFilter: cellFilter, obsHighlight: cellHighlight, obsSetSelection, obsSetColor, obsColorEncoding: cellColorEncoding, additionalObsSets: additionalCellSets, featurePointSignificanceThreshold, featurePointFoldChangeThreshold, featureValueTransform, featureValueTransformCoefficient, gatingFeatureSelectionX, gatingFeatureSelectionY, featureSelection, sampleSetSelection, sampleSetColor, }, { setObsFilter: setCellFilter, setObsSetSelection, setObsHighlight: setCellHighlight, setObsSetColor: setCellSetColor, setObsColorEncoding: setCellColorEncoding, setAdditionalObsSets: setAdditionalCellSets, setFeaturePointSignificanceThreshold, setFeaturePointFoldChangeThreshold, setFeatureValueTransform, setFeatureValueTransformCoefficient, setGatingFeatureSelectionX, setGatingFeatureSelectionY, setFeatureSelection, setSampleSetSelection, setSampleSetColor, }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType.FEATURE_STATS_TABLE], coordinationScopes);
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const obsSetsLoader = useMatchingLoader(loaders, dataset, DataType.OBS_SETS, { obsType });
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{"version":3,"file":"TreemapSubscriber.d.ts","sourceRoot":"","sources":["../src/TreemapSubscriber.js"],"names":[],"mappings":"
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{"version":3,"file":"TreemapSubscriber.d.ts","sourceRoot":"","sources":["../src/TreemapSubscriber.js"],"names":[],"mappings":"AA0BA,2DA+QC"}
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import React, { useMemo, useCallback } from 'react';
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import { TitleInfo, useCoordination, useLoaders, useUrls, useReady, useGridItemSize, useObsFeatureMatrixIndices, useObsSetsData, useSampleEdgesData, useSampleSetsData, } from '@vitessce/vit-s';
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import { TitleInfo, useCoordination, useLoaders, useUrls, useReady, useGridItemSize, useObsFeatureMatrixIndices, useObsSetsData, useSampleEdgesData, useSampleSetsData, useCoordinationScopes, } from '@vitessce/vit-s';
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import { ViewType, COMPONENT_COORDINATION_TYPES, ViewHelpMapping } from '@vitessce/constants-internal';
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import { treeToSelectedSetMap, treeToSetSizesBySetNames, mergeObsSets } from '@vitessce/sets-utils';
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import { pluralize as plur, commaNumber, unnestMap, capitalize } from '@vitessce/utils';
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@@ -12,9 +12,10 @@ import { useStyles } from './styles.js';
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import TreemapOptions from './TreemapOptions.js';
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const DEFAULT_HIERARCHY_LEVELS = ['obsSet', 'sampleSet'];
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export function TreemapSubscriber(props) {
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const { coordinationScopes, removeGridComponent, theme, helpText = ViewHelpMapping.TREEMAP, } = props;
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const { coordinationScopes: coordinationScopesRaw, removeGridComponent, theme, helpText = ViewHelpMapping.TREEMAP, } = props;
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const { classes } = useStyles();
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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// Get "props" from the coordination space.
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const [{ dataset, obsType, featureType, featureValueType, obsFilter, obsHighlight, obsSetSelection, obsSetFilter, obsSelection, obsSelectionMode, obsSetHighlight, obsSetColor, obsColorEncoding, additionalObsSets, sampleType, sampleSetSelection, sampleSetFilter, sampleSetColor, sampleSelection, sampleSelectionMode, sampleFilter, sampleFilterMode, sampleHighlight, hierarchyLevels, }, { setObsFilter, setObsSelection, setObsSetFilter, setObsSetSelection, setObsSelectionMode, setObsFilterMode, setObsHighlight, setObsSetColor, setObsColorEncoding, setAdditionalObsSets, setSampleFilter, setSampleSetFilter, setSampleFilterMode, setSampleSelection, setSampleSetSelection, setSampleSelectionMode, setSampleHighlight, setSampleSetColor, setHierarchyLevels, }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType.TREEMAP], coordinationScopes);
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const [width, height, containerRef] = useGridItemSize();
|
@@ -1 +1 @@
|
|
1
|
-
{"version":3,"file":"VolcanoPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/VolcanoPlotSubscriber.js"],"names":[],"mappings":"
|
1
|
+
{"version":3,"file":"VolcanoPlotSubscriber.d.ts","sourceRoot":"","sources":["../src/VolcanoPlotSubscriber.js"],"names":[],"mappings":"AAwBA,+DA2JC"}
|
@@ -1,16 +1,17 @@
|
|
1
1
|
import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
|
2
2
|
/* eslint-disable no-unused-vars */
|
3
3
|
import React, { useMemo, useCallback } from 'react';
|
4
|
-
import { TitleInfo, useCoordination, useLoaders, useReady, useGridItemSize, useFeatureStatsData, useMatchingLoader, useColumnNameMapping, } from '@vitessce/vit-s';
|
4
|
+
import { TitleInfo, useCoordination, useLoaders, useReady, useGridItemSize, useFeatureStatsData, useMatchingLoader, useColumnNameMapping, useCoordinationScopes, } from '@vitessce/vit-s';
|
5
5
|
import { ViewType, COMPONENT_COORDINATION_TYPES, ViewHelpMapping, DataType, } from '@vitessce/constants-internal';
|
6
6
|
import VolcanoPlot from './VolcanoPlot.js';
|
7
7
|
import { useStyles } from './styles.js';
|
8
8
|
import VolcanoPlotOptions from './VolcanoPlotOptions.js';
|
9
9
|
import { useRawSetPaths } from './utils.js';
|
10
10
|
export function VolcanoPlotSubscriber(props) {
|
11
|
-
const { title = 'Volcano Plot', coordinationScopes, removeGridComponent, theme, helpText = ViewHelpMapping.VOLCANO_PLOT, } = props;
|
11
|
+
const { title = 'Volcano Plot', coordinationScopes: coordinationScopesRaw, removeGridComponent, theme, helpText = ViewHelpMapping.VOLCANO_PLOT, } = props;
|
12
12
|
const { classes } = useStyles();
|
13
13
|
const loaders = useLoaders();
|
14
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
14
15
|
// Get "props" from the coordination space.
|
15
16
|
const [{ dataset, obsType, sampleType, featureType, featureValueType, obsFilter: cellFilter, obsHighlight: cellHighlight, obsSetSelection, obsSetColor, obsColorEncoding: cellColorEncoding, additionalObsSets: additionalCellSets, featurePointSignificanceThreshold, featurePointFoldChangeThreshold, featureLabelSignificanceThreshold, featureLabelFoldChangeThreshold, featureValueTransform, featureValueTransformCoefficient, gatingFeatureSelectionX, gatingFeatureSelectionY, featureSelection, sampleSetSelection, sampleSetColor, }, { setObsFilter: setCellFilter, setObsSetSelection, setObsHighlight: setCellHighlight, setObsSetColor: setCellSetColor, setObsColorEncoding: setCellColorEncoding, setAdditionalObsSets: setAdditionalCellSets, setFeaturePointSignificanceThreshold, setFeaturePointFoldChangeThreshold, setFeatureLabelSignificanceThreshold, setFeatureLabelFoldChangeThreshold, setFeatureValueTransform, setFeatureValueTransformCoefficient, setGatingFeatureSelectionX, setGatingFeatureSelectionY, setFeatureSelection, setSampleSetSelection, setSampleSetColor, }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType.VOLCANO_PLOT], coordinationScopes);
|
16
17
|
const [width, height, containerRef] = useGridItemSize();
|
package/package.json
CHANGED
@@ -1,6 +1,6 @@
|
|
1
1
|
{
|
2
2
|
"name": "@vitessce/statistical-plots",
|
3
|
-
"version": "3.6.
|
3
|
+
"version": "3.6.18",
|
4
4
|
"author": "HIDIVE Lab at HMS",
|
5
5
|
"homepage": "http://vitessce.io",
|
6
6
|
"repository": {
|
@@ -28,13 +28,13 @@
|
|
28
28
|
"react-aria": "^3.28.0",
|
29
29
|
"internmap": "^2.0.3",
|
30
30
|
"uuid": "^9.0.0",
|
31
|
-
"@vitessce/styles": "3.6.
|
32
|
-
"@vitessce/constants-internal": "3.6.
|
33
|
-
"@vitessce/sets-utils": "3.6.
|
34
|
-
"@vitessce/utils": "3.6.
|
35
|
-
"@vitessce/vega": "3.6.
|
36
|
-
"@vitessce/vit-s": "3.6.
|
37
|
-
"@vitessce/gl": "3.6.
|
31
|
+
"@vitessce/styles": "3.6.18",
|
32
|
+
"@vitessce/constants-internal": "3.6.18",
|
33
|
+
"@vitessce/sets-utils": "3.6.18",
|
34
|
+
"@vitessce/utils": "3.6.18",
|
35
|
+
"@vitessce/vega": "3.6.18",
|
36
|
+
"@vitessce/vit-s": "3.6.18",
|
37
|
+
"@vitessce/gl": "3.6.18"
|
38
38
|
},
|
39
39
|
"devDependencies": {
|
40
40
|
"react": "^18.0.0",
|
@@ -9,6 +9,7 @@ import {
|
|
9
9
|
useObsSetStatsData,
|
10
10
|
useMatchingLoader,
|
11
11
|
useColumnNameMapping,
|
12
|
+
useCoordinationScopes,
|
12
13
|
} from '@vitessce/vit-s';
|
13
14
|
import {
|
14
15
|
ViewType,
|
@@ -24,7 +25,7 @@ import { useRawSetPaths } from './utils.js';
|
|
24
25
|
|
25
26
|
export function CellSetCompositionBarPlotSubscriber(props) {
|
26
27
|
const {
|
27
|
-
coordinationScopes,
|
28
|
+
coordinationScopes: coordinationScopesRaw,
|
28
29
|
removeGridComponent,
|
29
30
|
theme,
|
30
31
|
helpText = ViewHelpMapping.OBS_SET_COMPOSITION_BAR_PLOT,
|
@@ -32,6 +33,7 @@ export function CellSetCompositionBarPlotSubscriber(props) {
|
|
32
33
|
|
33
34
|
const { classes } = useStyles();
|
34
35
|
const loaders = useLoaders();
|
36
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
35
37
|
|
36
38
|
// Get "props" from the coordination space.
|
37
39
|
const [{
|
@@ -9,6 +9,7 @@ import {
|
|
9
9
|
useSampleSetsData,
|
10
10
|
useSampleEdgesData,
|
11
11
|
useExpandedFeatureLabelsMap,
|
12
|
+
useCoordinationScopes,
|
12
13
|
} from '@vitessce/vit-s';
|
13
14
|
import { ViewType, COMPONENT_COORDINATION_TYPES, ViewHelpMapping } from '@vitessce/constants-internal';
|
14
15
|
import { VALUE_TRANSFORM_OPTIONS, capitalize, cleanFeatureId } from '@vitessce/utils';
|
@@ -132,7 +133,7 @@ function useExpressionByCellSet(
|
|
132
133
|
*/
|
133
134
|
export function CellSetExpressionPlotSubscriber(props) {
|
134
135
|
const {
|
135
|
-
coordinationScopes,
|
136
|
+
coordinationScopes: coordinationScopesRaw,
|
136
137
|
closeButtonVisible,
|
137
138
|
downloadButtonVisible,
|
138
139
|
removeGridComponent,
|
@@ -147,6 +148,7 @@ export function CellSetExpressionPlotSubscriber(props) {
|
|
147
148
|
|
148
149
|
const { classes } = useStyles();
|
149
150
|
const loaders = useLoaders();
|
151
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
150
152
|
|
151
153
|
// Get "props" from the coordination space.
|
152
154
|
const [{
|
@@ -4,6 +4,7 @@ import {
|
|
4
4
|
useCoordination, useLoaders,
|
5
5
|
useUrls, useReady, useGridItemSize,
|
6
6
|
useObsSetsData,
|
7
|
+
useCoordinationScopes,
|
7
8
|
} from '@vitessce/vit-s';
|
8
9
|
import { isEqual } from 'lodash-es';
|
9
10
|
import { ViewType, COMPONENT_COORDINATION_TYPES, ViewHelpMapping } from '@vitessce/constants-internal';
|
@@ -27,7 +28,7 @@ import { useStyles } from './styles.js';
|
|
27
28
|
*/
|
28
29
|
export function CellSetSizesPlotSubscriber(props) {
|
29
30
|
const {
|
30
|
-
coordinationScopes,
|
31
|
+
coordinationScopes: coordinationScopesRaw,
|
31
32
|
closeButtonVisible,
|
32
33
|
downloadButtonVisible,
|
33
34
|
removeGridComponent,
|
@@ -39,6 +40,7 @@ export function CellSetSizesPlotSubscriber(props) {
|
|
39
40
|
const { classes } = useStyles();
|
40
41
|
|
41
42
|
const loaders = useLoaders();
|
43
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
42
44
|
|
43
45
|
// Get "props" from the coordination space.
|
44
46
|
const [{
|
package/src/DotPlotSubscriber.js
CHANGED
@@ -8,6 +8,7 @@ import {
|
|
8
8
|
useFeatureLabelsData,
|
9
9
|
useSampleSetsData,
|
10
10
|
useSampleEdgesData,
|
11
|
+
useCoordinationScopes,
|
11
12
|
} from '@vitessce/vit-s';
|
12
13
|
import { ViewType, COMPONENT_COORDINATION_TYPES, ViewHelpMapping } from '@vitessce/constants-internal';
|
13
14
|
import { VALUE_TRANSFORM_OPTIONS } from '@vitessce/utils';
|
@@ -27,7 +28,7 @@ import { useExpressionSummaries } from './dot-plot-hook.js';
|
|
27
28
|
*/
|
28
29
|
export function DotPlotSubscriber(props) {
|
29
30
|
const {
|
30
|
-
coordinationScopes,
|
31
|
+
coordinationScopes: coordinationScopesRaw,
|
31
32
|
removeGridComponent,
|
32
33
|
theme,
|
33
34
|
title = 'Dot Plot',
|
@@ -37,6 +38,7 @@ export function DotPlotSubscriber(props) {
|
|
37
38
|
|
38
39
|
const { classes } = useStyles();
|
39
40
|
const loaders = useLoaders();
|
41
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
40
42
|
|
41
43
|
// Get "props" from the coordination space.
|
42
44
|
const [{
|
@@ -7,6 +7,7 @@ import {
|
|
7
7
|
useCoordination, useLoaders,
|
8
8
|
useUrls, useReady, useGridItemSize,
|
9
9
|
useObsFeatureMatrixData, useFeatureSelection,
|
10
|
+
useCoordinationScopes,
|
10
11
|
} from '@vitessce/vit-s';
|
11
12
|
import { ViewType, COMPONENT_COORDINATION_TYPES, ViewHelpMapping } from '@vitessce/constants-internal';
|
12
13
|
import { setObsSelection, getObsInfoFromDataWithinRange } from '@vitessce/sets-utils';
|
@@ -24,7 +25,7 @@ import { useStyles } from './styles.js';
|
|
24
25
|
*/
|
25
26
|
export function ExpressionHistogramSubscriber(props) {
|
26
27
|
const {
|
27
|
-
coordinationScopes,
|
28
|
+
coordinationScopes: coordinationScopesRaw,
|
28
29
|
closeButtonVisible,
|
29
30
|
downloadButtonVisible,
|
30
31
|
removeGridComponent,
|
@@ -34,6 +35,7 @@ export function ExpressionHistogramSubscriber(props) {
|
|
34
35
|
|
35
36
|
const { classes } = useStyles();
|
36
37
|
const loaders = useLoaders();
|
38
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
37
39
|
|
38
40
|
// Get "props" from the coordination space.
|
39
41
|
const [{
|
@@ -9,6 +9,7 @@ import {
|
|
9
9
|
useFeatureSelection,
|
10
10
|
useObsFeatureMatrixIndices,
|
11
11
|
useFeatureLabelsData,
|
12
|
+
useCoordinationScopes,
|
12
13
|
} from '@vitessce/vit-s';
|
13
14
|
import { ViewType, COMPONENT_COORDINATION_TYPES, ViewHelpMapping } from '@vitessce/constants-internal';
|
14
15
|
import { setObsSelection } from '@vitessce/sets-utils';
|
@@ -18,7 +19,7 @@ import { useStyles } from './styles.js';
|
|
18
19
|
|
19
20
|
export function FeatureBarPlotSubscriber(props) {
|
20
21
|
const {
|
21
|
-
coordinationScopes,
|
22
|
+
coordinationScopes: coordinationScopesRaw,
|
22
23
|
removeGridComponent,
|
23
24
|
theme,
|
24
25
|
yMin = 0,
|
@@ -28,6 +29,7 @@ export function FeatureBarPlotSubscriber(props) {
|
|
28
29
|
|
29
30
|
const { classes } = useStyles();
|
30
31
|
const loaders = useLoaders();
|
32
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
31
33
|
|
32
34
|
// Get "props" from the coordination space.
|
33
35
|
const [{
|
@@ -10,6 +10,7 @@ import {
|
|
10
10
|
useMatchingLoader,
|
11
11
|
useColumnNameMapping,
|
12
12
|
useAsyncFunction,
|
13
|
+
useCoordinationScopes,
|
13
14
|
} from '@vitessce/vit-s';
|
14
15
|
import {
|
15
16
|
ViewType,
|
@@ -26,7 +27,7 @@ import { useRawSetPaths } from './utils.js';
|
|
26
27
|
|
27
28
|
export function FeatureSetEnrichmentBarPlotSubscriber(props) {
|
28
29
|
const {
|
29
|
-
coordinationScopes,
|
30
|
+
coordinationScopes: coordinationScopesRaw,
|
30
31
|
removeGridComponent,
|
31
32
|
theme,
|
32
33
|
helpText = ViewHelpMapping.FEATURE_SET_ENRICHMENT_BAR_PLOT,
|
@@ -34,6 +35,7 @@ export function FeatureSetEnrichmentBarPlotSubscriber(props) {
|
|
34
35
|
|
35
36
|
const { classes } = useStyles();
|
36
37
|
const loaders = useLoaders();
|
38
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
37
39
|
const transformFeature = useAsyncFunction(AsyncFunctionType.TRANSFORM_FEATURE);
|
38
40
|
|
39
41
|
// Get "props" from the coordination space.
|
@@ -8,6 +8,7 @@ import {
|
|
8
8
|
useFeatureStatsData,
|
9
9
|
useMatchingLoader,
|
10
10
|
useColumnNameMapping,
|
11
|
+
useCoordinationScopes,
|
11
12
|
} from '@vitessce/vit-s';
|
12
13
|
import {
|
13
14
|
ViewType,
|
@@ -21,13 +22,14 @@ import { useRawSetPaths } from './utils.js';
|
|
21
22
|
export function FeatureStatsTableSubscriber(props) {
|
22
23
|
const {
|
23
24
|
title = 'Differential Expression Results',
|
24
|
-
coordinationScopes,
|
25
|
+
coordinationScopes: coordinationScopesRaw,
|
25
26
|
removeGridComponent,
|
26
27
|
theme,
|
27
28
|
helpText = ViewHelpMapping.FEATURE_STATS_TABLE,
|
28
29
|
} = props;
|
29
30
|
|
30
31
|
const loaders = useLoaders();
|
32
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
31
33
|
|
32
34
|
// Get "props" from the coordination space.
|
33
35
|
const [{
|
package/src/TreemapSubscriber.js
CHANGED
@@ -11,6 +11,7 @@ import {
|
|
11
11
|
useObsSetsData,
|
12
12
|
useSampleEdgesData,
|
13
13
|
useSampleSetsData,
|
14
|
+
useCoordinationScopes,
|
14
15
|
} from '@vitessce/vit-s';
|
15
16
|
import { ViewType, COMPONENT_COORDINATION_TYPES, ViewHelpMapping } from '@vitessce/constants-internal';
|
16
17
|
import { treeToSelectedSetMap, treeToSetSizesBySetNames, mergeObsSets } from '@vitessce/sets-utils';
|
@@ -25,7 +26,7 @@ const DEFAULT_HIERARCHY_LEVELS = ['obsSet', 'sampleSet'];
|
|
25
26
|
|
26
27
|
export function TreemapSubscriber(props) {
|
27
28
|
const {
|
28
|
-
coordinationScopes,
|
29
|
+
coordinationScopes: coordinationScopesRaw,
|
29
30
|
removeGridComponent,
|
30
31
|
theme,
|
31
32
|
helpText = ViewHelpMapping.TREEMAP,
|
@@ -33,6 +34,7 @@ export function TreemapSubscriber(props) {
|
|
33
34
|
|
34
35
|
const { classes } = useStyles();
|
35
36
|
const loaders = useLoaders();
|
37
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
36
38
|
|
37
39
|
// Get "props" from the coordination space.
|
38
40
|
const [{
|
@@ -9,6 +9,7 @@ import {
|
|
9
9
|
useFeatureStatsData,
|
10
10
|
useMatchingLoader,
|
11
11
|
useColumnNameMapping,
|
12
|
+
useCoordinationScopes,
|
12
13
|
} from '@vitessce/vit-s';
|
13
14
|
import {
|
14
15
|
ViewType,
|
@@ -24,7 +25,7 @@ import { useRawSetPaths } from './utils.js';
|
|
24
25
|
export function VolcanoPlotSubscriber(props) {
|
25
26
|
const {
|
26
27
|
title = 'Volcano Plot',
|
27
|
-
coordinationScopes,
|
28
|
+
coordinationScopes: coordinationScopesRaw,
|
28
29
|
removeGridComponent,
|
29
30
|
theme,
|
30
31
|
helpText = ViewHelpMapping.VOLCANO_PLOT,
|
@@ -32,6 +33,7 @@ export function VolcanoPlotSubscriber(props) {
|
|
32
33
|
|
33
34
|
const { classes } = useStyles();
|
34
35
|
const loaders = useLoaders();
|
36
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
35
37
|
|
36
38
|
// Get "props" from the coordination space.
|
37
39
|
const [{
|