@vitessce/statistical-plots 3.6.13 → 3.6.15

package/dist/{deflate-Dm0PZc2F.js → deflate-CWzHkMt8.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { B as BaseDecoder } from "./index-CIqXsmFh.js";
+import { B as BaseDecoder } from "./index-jTgzybKh.js";
 class DeflateDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return inflate_1(new Uint8Array(buffer)).buffer;

package/dist/{index-CIqXsmFh.js → index-jTgzybKh.js}

@@ -164,6 +164,7 @@ const FileType$1 = {
   OBS_SPOTS_SPATIALDATA_ZARR: "obsSpots.spatialdata.zarr",
   FEATURE_LABELS_SPATIALDATA_ZARR: "featureLabels.spatialdata.zarr",
   OBS_POINTS_SPATIALDATA_ZARR: "obsPoints.spatialdata.zarr",
+  OBS_EMBEDDING_SPATIALDATA_ZARR: "obsEmbedding.spatialdata.zarr",
   // SpatialData - zipped
   IMAGE_SPATIALDATA_ZARR_ZIP: "image.spatialdata.zarr.zip",
   LABELS_SPATIALDATA_ZARR_ZIP: "labels.spatialdata.zarr.zip",
@@ -173,6 +174,7 @@ const FileType$1 = {
   OBS_SPOTS_SPATIALDATA_ZARR_ZIP: "obsSpots.spatialdata.zarr.zip",
   FEATURE_LABELS_SPATIALDATA_ZARR_ZIP: "featureLabels.spatialdata.zarr.zip",
   OBS_POINTS_SPATIALDATA_ZARR_ZIP: "obsPoints.spatialdata.zarr.zip",
+  OBS_EMBEDDING_SPATIALDATA_ZARR_ZIP: "obsEmbedding.spatialdata.zarr.zip",
   // MuData
   OBS_FEATURE_MATRIX_MUDATA_ZARR: "obsFeatureMatrix.mudata.zarr",
   OBS_SETS_MUDATA_ZARR: "obsSets.mudata.zarr",
@@ -432,6 +434,7 @@ const ViewHelpMapping = {
   [FileType$1.OBS_SETS_SPATIALDATA_ZARR]: DataType$2.OBS_SETS,
   [FileType$1.FEATURE_LABELS_SPATIALDATA_ZARR]: DataType$2.FEATURE_LABELS,
   [FileType$1.OBS_POINTS_SPATIALDATA_ZARR]: DataType$2.OBS_POINTS,
+  [FileType$1.OBS_EMBEDDING_SPATIALDATA_ZARR]: DataType$2.OBS_EMBEDDING,
   // For new file types to support old file types
   [FileType$1.OBS_EMBEDDING_CELLS_JSON]: DataType$2.OBS_EMBEDDING,
   [FileType$1.OBS_LOCATIONS_CELLS_JSON]: DataType$2.OBS_LOCATIONS,
@@ -608,6 +611,9 @@ const ViewHelpMapping = {
   },
   [FileType$1.OBS_POINTS_SPATIALDATA_ZARR]: {
     zip: FileType$1.OBS_POINTS_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.OBS_EMBEDDING_SPATIALDATA_ZARR]: {
+    zip: FileType$1.OBS_EMBEDDING_SPATIALDATA_ZARR_ZIP
   }
 });
 [
@@ -11092,6 +11098,16 @@ const obsSetsSpatialdataSchema = z.object({
   tablePath: z.string().optional().describe("The path to a table which contains the index for the set values."),
   obsSets: annDataObsSetsArr
 });
+annDataObsEmbedding.extend({
+  // We extend anndataObsEmbedding which already has properties like `dims` and `path`.
+  region: z.string().describe("The name of a region to use to filter instances (i.e., rows) in the table").optional(),
+  tablePath: z.string().optional().describe("The path to a table which contains the index for the set values.")
+});
+const obsEmbeddingSpatialdataSchemaConvenience = z.union([
+  annDataObsEmbedding,
+  // For convenience, allow an array of items with `embeddingType` properties.
+  z.array(annDataConvenienceObsEmbeddingItem)
+]);
 z.object({
   targetX: z.number(),
   targetY: z.number(),
@@ -11200,9 +11216,10 @@ z.object({
   // TODO: obsPoints
   // TODO: obsLocations
   obsSets: obsSetsSpatialdataSchema,
-  // TODO: obsEmbedding
+  obsEmbedding: obsEmbeddingSpatialdataSchemaConvenience,
   // TODO: obsLabels
   // TODO: featureLabels
+  // TODO: allow specifying tablePath and region at the top-level here.
   coordinateSystem: z.string().optional().describe("The name of a coordinate transformation output used to transform all elements which lack a per-element coordinateSystem property.")
 }).partial();
 z.object({
@@ -178720,22 +178737,22 @@ function addDecoder(cases2, importFn) {
   }
   cases2.forEach((c2) => registry$1.set(c2, importFn));
 }
-addDecoder([void 0, 1], () => import("./raw-BMmSKVDS.js").then((m2) => m2.default));
-addDecoder(5, () => import("./lzw-DdkwQP4Y.js").then((m2) => m2.default));
+addDecoder([void 0, 1], () => import("./raw-DDZdro0w.js").then((m2) => m2.default));
+addDecoder(5, () => import("./lzw-BeELIhvX.js").then((m2) => m2.default));
 addDecoder(6, () => {
   throw new Error("old style JPEG compression is not supported.");
 });
-addDecoder(7, () => import("./jpeg-B_rzx3DO.js").then((m2) => m2.default));
-addDecoder([8, 32946], () => import("./deflate-Dm0PZc2F.js").then((m2) => m2.default));
-addDecoder(32773, () => import("./packbits-kigCEjo4.js").then((m2) => m2.default));
+addDecoder(7, () => import("./jpeg-CKLZ6Ujk.js").then((m2) => m2.default));
+addDecoder([8, 32946], () => import("./deflate-CWzHkMt8.js").then((m2) => m2.default));
+addDecoder(32773, () => import("./packbits-Dt1MSk9z.js").then((m2) => m2.default));
 addDecoder(
   34887,
-  () => import("./lerc-DtYkE7gf.js").then(async (m2) => {
+  () => import("./lerc-Bg8_SUgD.js").then(async (m2) => {
     await m2.zstd.init();
     return m2;
   }).then((m2) => m2.default)
 );
-addDecoder(50001, () => import("./webimage-Ba4jGxpB.js").then((m2) => m2.default));
+addDecoder(50001, () => import("./webimage-rE8shGdx.js").then((m2) => m2.default));
 function decodeRowAcc(row, stride) {
   let length2 = row.length - stride;
   let offset2 = 0;
@@ -189026,10 +189043,10 @@ function multiSetsToTextureData(multiFeatureValues, multiMatrixObsIndex, setColo
   channelIsSetColorMode.forEach((isSetColorMode, channelIndex) => {
     var _a3, _b2, _c2, _d2;
     if (isSetColorMode) {
-      totalColorsLength += (((_b2 = (_a3 = setColorValues[channelIndex]) == null ? void 0 : _a3.setColors) == null ? void 0 : _b2.length) || 0) * 3;
+      totalColorsLength += (((_b2 = (_a3 = setColorValues[channelIndex]) == null ? void 0 : _a3.setColors) == null ? void 0 : _b2.length) ?? 0) * 3;
       totalValuesLength += ((_c2 = setColorValues[channelIndex]) == null ? void 0 : _c2.obsIndex) ? max$3(setColorValues[channelIndex].obsIndex.map((d) => parseInt(d))) : 0;
     } else {
-      totalValuesLength += multiMatrixObsIndex[channelIndex] ? max$3(multiMatrixObsIndex[channelIndex].map((d) => parseInt(d))) : ((_d2 = multiFeatureValues[channelIndex]) == null ? void 0 : _d2.length) || 0;
+      totalValuesLength += multiMatrixObsIndex[channelIndex] ? max$3(multiMatrixObsIndex[channelIndex].map((d) => parseInt(d))) : ((_d2 = multiFeatureValues[channelIndex]) == null ? void 0 : _d2.length) ?? 0;
     }
   });
   const valueTexHeight = Math.max(2, Math.ceil(totalValuesLength / texSize));
@@ -189050,7 +189067,7 @@ function multiSetsToTextureData(multiFeatureValues, multiMatrixObsIndex, setColo
     const matrixObsIndex = multiMatrixObsIndex[channelIndex];
     const bitmaskValueIsIndex = matrixObsIndex === null;
     if (isSetColorMode) {
-      const { setColorIndices, setColors, obsIndex } = setColorValues[channelIndex] || {};
+      const { setColorIndices, setColors, obsIndex } = setColorValues[channelIndex] ?? {};
       if (setColorIndices && setColors && obsIndex) {
         for (let i2 = 0; i2 < obsIndex.length; i2++) {
           let obsId = String(i2 + 1);
@@ -189074,7 +189091,7 @@ function multiSetsToTextureData(multiFeatureValues, multiMatrixObsIndex, setColo
       indexOffset += (obsIndex == null ? void 0 : obsIndex.length) || 0;
       colorOffset += (setColors == null ? void 0 : setColors.length) || 0;
     } else {
-      const featureArr = multiFeatureValues[channelIndex];
+      const featureArr = multiFeatureValues[channelIndex] ?? [];
       const normalizedFeatureArr = normalize$3(featureArr);
       if (!bitmaskValueIsIndex && matrixObsIndex) {
         for (let i2 = 0; i2 < matrixObsIndex.length; i2++) {

package/dist/index.js

@@ -1,4 +1,4 @@
-import { b, f, C, e, a, i, D, h, E, F, c, d, T, V } from "./index-CIqXsmFh.js";
+import { b, f, C, e, a, i, D, h, E, F, c, d, T, V } from "./index-jTgzybKh.js";
 export {
   b as CellSetCompositionBarPlotSubscriber,
   f as CellSetExpressionPlot,

package/dist/{jpeg-B_rzx3DO.js → jpeg-CKLZ6Ujk.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-CIqXsmFh.js";
+import { B as BaseDecoder } from "./index-jTgzybKh.js";
 const dctZigZag = new Int32Array([
   0,
   1,

package/dist/{lerc-DtYkE7gf.js → lerc-Bg8_SUgD.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-CIqXsmFh.js";
+import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-jTgzybKh.js";
 const LercParameters = {
   AddCompression: 1
 };

package/dist/{lzw-DdkwQP4Y.js → lzw-BeELIhvX.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-CIqXsmFh.js";
+import { B as BaseDecoder } from "./index-jTgzybKh.js";
 const MIN_BITS = 9;
 const CLEAR_CODE = 256;
 const EOI_CODE = 257;

package/dist/{packbits-kigCEjo4.js → packbits-Dt1MSk9z.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-CIqXsmFh.js";
+import { B as BaseDecoder } from "./index-jTgzybKh.js";
 class PackbitsDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     const dataView = new DataView(buffer);

package/dist/{raw-BMmSKVDS.js → raw-DDZdro0w.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-CIqXsmFh.js";
+import { B as BaseDecoder } from "./index-jTgzybKh.js";
 class RawDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return buffer;

package/dist/{webimage-Ba4jGxpB.js → webimage-rE8shGdx.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-CIqXsmFh.js";
+import { B as BaseDecoder } from "./index-jTgzybKh.js";
 class WebImageDecoder extends BaseDecoder {
   constructor() {
     super();

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/statistical-plots",
-  "version": "3.6.13",
+  "version": "3.6.15",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -28,13 +28,13 @@
     "react-aria": "^3.28.0",
     "internmap": "^2.0.3",
     "uuid": "^9.0.0",
-    "@vitessce/styles": "3.6.13",
-    "@vitessce/constants-internal": "3.6.13",
-    "@vitessce/sets-utils": "3.6.13",
-    "@vitessce/utils": "3.6.13",
-    "@vitessce/vega": "3.6.13",
-    "@vitessce/vit-s": "3.6.13",
-    "@vitessce/gl": "3.6.13"
+    "@vitessce/styles": "3.6.15",
+    "@vitessce/constants-internal": "3.6.15",
+    "@vitessce/sets-utils": "3.6.15",
+    "@vitessce/utils": "3.6.15",
+    "@vitessce/vega": "3.6.15",
+    "@vitessce/vit-s": "3.6.15",
+    "@vitessce/gl": "3.6.15"
   },
   "devDependencies": {
     "react": "^18.0.0",