@vitessce/statistical-plots 3.4.7 → 3.4.8

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Files changed (16) hide show
  1. package/dist/{deflate-c8c2f459.js → deflate-9b949812.js} +1 -1
  2. package/dist/{index-a1925e78.js → index-ff4d0660.js} +25 -23
  3. package/dist/index.js +1 -1
  4. package/dist/{jpeg-ffd14ffe.js → jpeg-9d65dc0f.js} +1 -1
  5. package/dist/{lerc-9d1dd17e.js → lerc-5d951898.js} +1 -1
  6. package/dist/{lzw-3705b408.js → lzw-f9f89edb.js} +1 -1
  7. package/dist/{packbits-6f657116.js → packbits-92275192.js} +1 -1
  8. package/dist/{raw-0a76dec9.js → raw-18214a1e.js} +1 -1
  9. package/dist/{webimage-fbdf3bdf.js → webimage-6f128314.js} +1 -1
  10. package/dist-tsc/dot-plot-hook.js +3 -3
  11. package/dist-tsc/expr-hooks.js +7 -7
  12. package/dist-tsc/expr-hooks.test.js +2 -2
  13. package/package.json +7 -7
  14. package/src/dot-plot-hook.js +3 -3
  15. package/src/expr-hooks.js +7 -7
  16. package/src/expr-hooks.test.js +2 -2
package/dist/{deflate-c8c2f459.js → deflate-9b949812.js} RENAMED
@@ -1,5 +1,5 @@
1
1
  import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
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- import { B as BaseDecoder } from "./index-a1925e78.js";
2
+ import { B as BaseDecoder } from "./index-ff4d0660.js";
3
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  import "react";
4
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  import "@vitessce/vit-s";
5
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  import "react-dom";
package/dist/{index-a1925e78.js → index-ff4d0660.js} RENAMED
@@ -18842,13 +18842,15 @@ function stratifyExpressionData(sampleEdges, sampleSets, sampleSetSelection, exp
18842
18842
  }
18843
18843
  function aggregateStratifiedExpressionData(stratifiedResult, geneSelection) {
18844
18844
  const result = new InternMap([], JSON.stringify);
18845
- [...stratifiedResult.keys()].forEach((cellSetKey) => {
18846
- result.set(cellSetKey, new InternMap([], JSON.stringify));
18847
- [...stratifiedResult.get(cellSetKey).keys()].forEach((sampleSetKey) => {
18848
- const values2 = stratifiedResult.get(cellSetKey).get(sampleSetKey).get(geneSelection[0]);
18849
- result.get(cellSetKey).set(sampleSetKey, values2);
18845
+ if (stratifiedResult) {
18846
+ Array.from(stratifiedResult.keys()).forEach((cellSetKey) => {
18847
+ result.set(cellSetKey, new InternMap([], JSON.stringify));
18848
+ Array.from(stratifiedResult.get(cellSetKey).keys()).forEach((sampleSetKey) => {
18849
+ const values2 = stratifiedResult.get(cellSetKey).get(sampleSetKey).get(geneSelection[0]);
18850
+ result.get(cellSetKey).set(sampleSetKey, values2);
18851
+ });
18850
18852
  });
18851
- });
18853
+ }
18852
18854
  return result;
18853
18855
  }
18854
18856
  const $b5e257d569688ac6$var$defaultContext = {
@@ -133126,16 +133128,16 @@ function addDecoder(cases2, importFn) {
133126
133128
  }
133127
133129
  cases2.forEach((c2) => registry$1.set(c2, importFn));
133128
133130
  }
133129
- addDecoder([void 0, 1], () => import("./raw-0a76dec9.js").then((m2) => m2.default));
133130
- addDecoder(5, () => import("./lzw-3705b408.js").then((m2) => m2.default));
133131
+ addDecoder([void 0, 1], () => import("./raw-18214a1e.js").then((m2) => m2.default));
133132
+ addDecoder(5, () => import("./lzw-f9f89edb.js").then((m2) => m2.default));
133131
133133
  addDecoder(6, () => {
133132
133134
  throw new Error("old style JPEG compression is not supported.");
133133
133135
  });
133134
- addDecoder(7, () => import("./jpeg-ffd14ffe.js").then((m2) => m2.default));
133135
- addDecoder([8, 32946], () => import("./deflate-c8c2f459.js").then((m2) => m2.default));
133136
- addDecoder(32773, () => import("./packbits-6f657116.js").then((m2) => m2.default));
133137
- addDecoder(34887, () => import("./lerc-9d1dd17e.js").then((m2) => m2.default));
133138
- addDecoder(50001, () => import("./webimage-fbdf3bdf.js").then((m2) => m2.default));
133136
+ addDecoder(7, () => import("./jpeg-9d65dc0f.js").then((m2) => m2.default));
133137
+ addDecoder([8, 32946], () => import("./deflate-9b949812.js").then((m2) => m2.default));
133138
+ addDecoder(32773, () => import("./packbits-92275192.js").then((m2) => m2.default));
133139
+ addDecoder(34887, () => import("./lerc-5d951898.js").then((m2) => m2.default));
133140
+ addDecoder(50001, () => import("./webimage-6f128314.js").then((m2) => m2.default));
133139
133141
  function decodeRowAcc(row, stride) {
133140
133142
  let length2 = row.length - stride;
133141
133143
  let offset5 = 0;
@@ -153684,12 +153686,12 @@ function summarize(iterable, keepZeros) {
153684
153686
  }
153685
153687
  function dotStratifiedExpressionData(stratifiedResult, posThreshold) {
153686
153688
  const result = new InternMap([], JSON.stringify);
153687
- [...stratifiedResult.keys()].forEach((cellSetKey) => {
153689
+ Array.from(stratifiedResult.keys()).forEach((cellSetKey) => {
153688
153690
  result.set(cellSetKey, new InternMap([], JSON.stringify));
153689
- [...stratifiedResult.get(cellSetKey).keys()].forEach((sampleSetKey) => {
153691
+ Array.from(stratifiedResult.get(cellSetKey).keys()).forEach((sampleSetKey) => {
153690
153692
  result.get(cellSetKey).set(sampleSetKey, new InternMap([], JSON.stringify));
153691
153693
  const allGenes = stratifiedResult.get(cellSetKey).get(sampleSetKey);
153692
- [...allGenes.keys()].forEach((geneKey) => {
153694
+ Array.from(allGenes.keys()).forEach((geneKey) => {
153693
153695
  const values2 = allGenes.get(geneKey);
153694
153696
  const exprMean = mean$1(values2);
153695
153697
  const numPos = values2.reduce((acc, val) => val > posThreshold ? acc + 1 : acc, 0);
@@ -153706,9 +153708,9 @@ function dotStratifiedExpressionData(stratifiedResult, posThreshold) {
153706
153708
  }
153707
153709
  function summarizeStratifiedExpressionData(stratifiedResult, keepZeros) {
153708
153710
  const summarizedResult = new InternMap([], JSON.stringify);
153709
- [...stratifiedResult.keys()].forEach((cellSetKey) => {
153711
+ Array.from(stratifiedResult.keys()).forEach((cellSetKey) => {
153710
153712
  summarizedResult.set(cellSetKey, new InternMap([], JSON.stringify));
153711
- [...stratifiedResult.get(cellSetKey).keys()].forEach((sampleSetKey) => {
153713
+ Array.from(stratifiedResult.get(cellSetKey).keys()).forEach((sampleSetKey) => {
153712
153714
  const values2 = stratifiedResult.get(cellSetKey).get(sampleSetKey);
153713
153715
  const summary = summarize(values2, keepZeros);
153714
153716
  summarizedResult.get(cellSetKey).set(sampleSetKey, summary);
@@ -153717,9 +153719,9 @@ function summarizeStratifiedExpressionData(stratifiedResult, keepZeros) {
153717
153719
  return summarizedResult;
153718
153720
  }
153719
153721
  function histogramStratifiedExpressionData(summarizedResult, binCount, yMinProp) {
153720
- const groupSummaries = [...summarizedResult.keys()].map((cellSetKey) => ({
153722
+ const groupSummaries = Array.from(summarizedResult.keys()).map((cellSetKey) => ({
153721
153723
  key: cellSetKey,
153722
- value: [...summarizedResult.get(cellSetKey).keys()].map((sampleSetKey) => ({
153724
+ value: Array.from(summarizedResult.get(cellSetKey).keys()).map((sampleSetKey) => ({
153723
153725
  key: sampleSetKey,
153724
153726
  value: summarizedResult.get(cellSetKey).get(sampleSetKey)
153725
153727
  }))
@@ -206140,9 +206142,9 @@ function useExpressionSummaries(sampleEdges, sampleSets, sampleSetSelection, exp
206140
206142
  JSON.stringify
206141
206143
  );
206142
206144
  const result = [];
206143
- [...dotData.keys()].forEach((cellSetKey) => {
206144
- [...dotData.get(cellSetKey).keys()].forEach((sampleSetKey) => {
206145
- [...dotData.get(cellSetKey).get(sampleSetKey).keys()].forEach((geneKey) => {
206145
+ Array.from(dotData.keys()).forEach((cellSetKey) => {
206146
+ Array.from(dotData.get(cellSetKey).keys()).forEach((sampleSetKey) => {
206147
+ Array.from(dotData.get(cellSetKey).get(sampleSetKey).keys()).forEach((geneKey) => {
206146
206148
  const dotObj = dotData.get(cellSetKey).get(sampleSetKey).get(geneKey);
206147
206149
  const featureName = geneKey;
206148
206150
  result.push({
package/dist/index.js CHANGED
@@ -1,4 +1,4 @@
1
- import { c, C, b, a, e, D, d, E, F } from "./index-a1925e78.js";
1
+ import { c, C, b, a, e, D, d, E, F } from "./index-ff4d0660.js";
2
2
  import "react";
3
3
  import "@vitessce/vit-s";
4
4
  import "react-dom";
package/dist/{jpeg-ffd14ffe.js → jpeg-9d65dc0f.js} RENAMED
@@ -1,4 +1,4 @@
1
- import { B as BaseDecoder } from "./index-a1925e78.js";
1
+ import { B as BaseDecoder } from "./index-ff4d0660.js";
2
2
  import "react";
3
3
  import "@vitessce/vit-s";
4
4
  import "react-dom";
package/dist/{lerc-9d1dd17e.js → lerc-5d951898.js} RENAMED
@@ -1,5 +1,5 @@
1
1
  import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
2
- import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-a1925e78.js";
2
+ import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-ff4d0660.js";
3
3
  import "react";
4
4
  import "@vitessce/vit-s";
5
5
  import "react-dom";
package/dist/{lzw-3705b408.js → lzw-f9f89edb.js} RENAMED
@@ -1,4 +1,4 @@
1
- import { B as BaseDecoder } from "./index-a1925e78.js";
1
+ import { B as BaseDecoder } from "./index-ff4d0660.js";
2
2
  import "react";
3
3
  import "@vitessce/vit-s";
4
4
  import "react-dom";
package/dist/{packbits-6f657116.js → packbits-92275192.js} RENAMED
@@ -1,4 +1,4 @@
1
- import { B as BaseDecoder } from "./index-a1925e78.js";
1
+ import { B as BaseDecoder } from "./index-ff4d0660.js";
2
2
  import "react";
3
3
  import "@vitessce/vit-s";
4
4
  import "react-dom";
package/dist/{raw-0a76dec9.js → raw-18214a1e.js} RENAMED
@@ -1,4 +1,4 @@
1
- import { B as BaseDecoder } from "./index-a1925e78.js";
1
+ import { B as BaseDecoder } from "./index-ff4d0660.js";
2
2
  import "react";
3
3
  import "@vitessce/vit-s";
4
4
  import "react-dom";
package/dist/{webimage-fbdf3bdf.js → webimage-6f128314.js} RENAMED
@@ -1,4 +1,4 @@
1
- import { B as BaseDecoder } from "./index-a1925e78.js";
1
+ import { B as BaseDecoder } from "./index-ff4d0660.js";
2
2
  import "react";
3
3
  import "@vitessce/vit-s";
4
4
  import "react-dom";
package/dist-tsc/dot-plot-hook.js CHANGED
@@ -36,9 +36,9 @@ export function useExpressionSummaries(sampleEdges, sampleSets, sampleSetSelecti
36
36
  const cellSetToUuid = new InternMap(cellSetSelection?.map(sampleSet => ([sampleSet, uuidv4()])), JSON.stringify);
37
37
  const sampleSetToUuid = new InternMap(sampleSetSelection?.map(sampleSet => ([sampleSet, uuidv4()])), JSON.stringify);
38
38
  const result = [];
39
- ([...dotData.keys()]).forEach((cellSetKey) => {
40
- ([...dotData.get(cellSetKey).keys()]).forEach((sampleSetKey) => {
41
- ([...dotData.get(cellSetKey).get(sampleSetKey).keys()]).forEach((geneKey) => {
39
+ Array.from(dotData.keys()).forEach((cellSetKey) => {
40
+ Array.from(dotData.get(cellSetKey).keys()).forEach((sampleSetKey) => {
41
+ Array.from(dotData.get(cellSetKey).get(sampleSetKey).keys()).forEach((geneKey) => {
42
42
  const dotObj = dotData.get(cellSetKey).get(sampleSetKey).get(geneKey);
43
43
  const featureName = geneKey;
44
44
  result.push({
package/dist-tsc/expr-hooks.js CHANGED
@@ -45,12 +45,12 @@ function summarize(iterable, keepZeros) {
45
45
  */
46
46
  export function dotStratifiedExpressionData(stratifiedResult, posThreshold) {
47
47
  const result = new InternMap([], JSON.stringify);
48
- ([...stratifiedResult.keys()]).forEach((cellSetKey) => {
48
+ Array.from(stratifiedResult.keys()).forEach((cellSetKey) => {
49
49
  result.set(cellSetKey, new InternMap([], JSON.stringify));
50
- ([...stratifiedResult.get(cellSetKey).keys()]).forEach((sampleSetKey) => {
50
+ Array.from(stratifiedResult.get(cellSetKey).keys()).forEach((sampleSetKey) => {
51
51
  result.get(cellSetKey).set(sampleSetKey, new InternMap([], JSON.stringify));
52
52
  const allGenes = stratifiedResult.get(cellSetKey).get(sampleSetKey);
53
- ([...allGenes.keys()]).forEach((geneKey) => {
53
+ Array.from(allGenes.keys()).forEach((geneKey) => {
54
54
  const values = allGenes.get(geneKey);
55
55
  const exprMean = d3_mean(values);
56
56
  const numPos = values.reduce((acc, val) => (val > posThreshold ? acc + 1 : acc), 0);
@@ -74,9 +74,9 @@ export function dotStratifiedExpressionData(stratifiedResult, posThreshold) {
74
74
  */
75
75
  export function summarizeStratifiedExpressionData(stratifiedResult, keepZeros) {
76
76
  const summarizedResult = new InternMap([], JSON.stringify);
77
- ([...stratifiedResult.keys()]).forEach((cellSetKey) => {
77
+ Array.from(stratifiedResult.keys()).forEach((cellSetKey) => {
78
78
  summarizedResult.set(cellSetKey, new InternMap([], JSON.stringify));
79
- ([...stratifiedResult.get(cellSetKey).keys()]).forEach((sampleSetKey) => {
79
+ Array.from(stratifiedResult.get(cellSetKey).keys()).forEach((sampleSetKey) => {
80
80
  const values = stratifiedResult.get(cellSetKey).get(sampleSetKey);
81
81
  const summary = summarize(values, keepZeros);
82
82
  summarizedResult.get(cellSetKey).set(sampleSetKey, summary);
@@ -94,9 +94,9 @@ export function summarizeStratifiedExpressionData(stratifiedResult, keepZeros) {
94
94
  * @returns
95
95
  */
96
96
  export function histogramStratifiedExpressionData(summarizedResult, binCount, yMinProp) {
97
- const groupSummaries = ([...summarizedResult.keys()]).map(cellSetKey => ({
97
+ const groupSummaries = Array.from(summarizedResult.keys()).map(cellSetKey => ({
98
98
  key: cellSetKey,
99
- value: ([...summarizedResult.get(cellSetKey).keys()]).map(sampleSetKey => ({
99
+ value: Array.from(summarizedResult.get(cellSetKey).keys()).map(sampleSetKey => ({
100
100
  key: sampleSetKey,
101
101
  value: summarizedResult.get(cellSetKey).get(sampleSetKey),
102
102
  })),
package/dist-tsc/expr-hooks.test.js CHANGED
@@ -73,8 +73,8 @@ describe('Utility functions for processing expression data for statistical plots
73
73
  const [result] = stratifyExpressionData(sampleEdges, sampleSets, sampleSetSelection, expressionData, obsIndex, mergedCellSets, geneSelection, cellSetSelection, cellSetColor, featureValueTransform, featureValueTransformCoefficient);
74
74
  const aggregateData = aggregateStratifiedExpressionData(result, geneSelection);
75
75
  const summaryResult = summarizeStratifiedExpressionData(aggregateData, true);
76
- expect([...summaryResult.keys()]).toEqual([['Cell type', 'T cell'], ['Cell type', 'B cell']]);
77
- expect([...summaryResult.get(['Cell type', 'T cell']).keys()]).toEqual([['Clinical groups', 'AKI'], ['Clinical groups', 'CKD']]);
76
+ expect(Array.from(summaryResult.keys())).toEqual([['Cell type', 'T cell'], ['Cell type', 'B cell']]);
77
+ expect(Array.from(summaryResult.get(['Cell type', 'T cell']).keys())).toEqual([['Clinical groups', 'AKI'], ['Clinical groups', 'CKD']]);
78
78
  expect(Object.keys(summaryResult.get(['Cell type', 'T cell']).get(['Clinical groups', 'AKI']))).toEqual([
79
79
  'quartiles',
80
80
  'range',
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@vitessce/statistical-plots",
3
- "version": "3.4.7",
3
+ "version": "3.4.8",
4
4
  "author": "Gehlenborg Lab",
5
5
  "homepage": "http://vitessce.io",
6
6
  "repository": {
@@ -28,12 +28,12 @@
28
28
  "react-aria": "^3.28.0",
29
29
  "internmap": "^2.0.3",
30
30
  "uuid": "^9.0.0",
31
- "@vitessce/constants-internal": "3.4.7",
32
- "@vitessce/sets-utils": "3.4.7",
33
- "@vitessce/utils": "3.4.7",
34
- "@vitessce/vega": "3.4.7",
35
- "@vitessce/vit-s": "3.4.7",
36
- "@vitessce/gl": "3.4.7"
31
+ "@vitessce/constants-internal": "3.4.8",
32
+ "@vitessce/sets-utils": "3.4.8",
33
+ "@vitessce/utils": "3.4.8",
34
+ "@vitessce/vega": "3.4.8",
35
+ "@vitessce/vit-s": "3.4.8",
36
+ "@vitessce/gl": "3.4.8"
37
37
  },
38
38
  "devDependencies": {
39
39
  "react": "^18.0.0",
package/src/dot-plot-hook.js CHANGED
@@ -68,9 +68,9 @@ export function useExpressionSummaries(
68
68
  );
69
69
 
70
70
  const result = [];
71
- ([...dotData.keys()]).forEach((cellSetKey) => {
72
- ([...dotData.get(cellSetKey).keys()]).forEach((sampleSetKey) => {
73
- ([...dotData.get(cellSetKey).get(sampleSetKey).keys()]).forEach((geneKey) => {
71
+ Array.from(dotData.keys()).forEach((cellSetKey) => {
72
+ Array.from(dotData.get(cellSetKey).keys()).forEach((sampleSetKey) => {
73
+ Array.from(dotData.get(cellSetKey).get(sampleSetKey).keys()).forEach((geneKey) => {
74
74
  const dotObj = dotData.get(cellSetKey).get(sampleSetKey).get(geneKey);
75
75
  const featureName = geneKey;
76
76
  result.push({
package/src/expr-hooks.js CHANGED
@@ -57,14 +57,14 @@ export function dotStratifiedExpressionData(
57
57
  stratifiedResult, posThreshold,
58
58
  ) {
59
59
  const result = new InternMap([], JSON.stringify);
60
- ([...stratifiedResult.keys()]).forEach((cellSetKey) => {
60
+ Array.from(stratifiedResult.keys()).forEach((cellSetKey) => {
61
61
  result.set(cellSetKey, new InternMap([], JSON.stringify));
62
- ([...stratifiedResult.get(cellSetKey).keys()]).forEach((sampleSetKey) => {
62
+ Array.from(stratifiedResult.get(cellSetKey).keys()).forEach((sampleSetKey) => {
63
63
  result.get(cellSetKey).set(sampleSetKey, new InternMap([], JSON.stringify));
64
64
 
65
65
  const allGenes = stratifiedResult.get(cellSetKey).get(sampleSetKey);
66
66
 
67
- ([...allGenes.keys()]).forEach((geneKey) => {
67
+ Array.from(allGenes.keys()).forEach((geneKey) => {
68
68
  const values = allGenes.get(geneKey);
69
69
 
70
70
  const exprMean = d3_mean(values);
@@ -95,9 +95,9 @@ export function summarizeStratifiedExpressionData(
95
95
  ) {
96
96
  const summarizedResult = new InternMap([], JSON.stringify);
97
97
 
98
- ([...stratifiedResult.keys()]).forEach((cellSetKey) => {
98
+ Array.from(stratifiedResult.keys()).forEach((cellSetKey) => {
99
99
  summarizedResult.set(cellSetKey, new InternMap([], JSON.stringify));
100
- ([...stratifiedResult.get(cellSetKey).keys()]).forEach((sampleSetKey) => {
100
+ Array.from(stratifiedResult.get(cellSetKey).keys()).forEach((sampleSetKey) => {
101
101
  const values = stratifiedResult.get(cellSetKey).get(sampleSetKey);
102
102
  const summary = summarize(values, keepZeros);
103
103
  summarizedResult.get(cellSetKey).set(sampleSetKey, summary);
@@ -119,9 +119,9 @@ export function summarizeStratifiedExpressionData(
119
119
  export function histogramStratifiedExpressionData(
120
120
  summarizedResult, binCount, yMinProp,
121
121
  ) {
122
- const groupSummaries = ([...summarizedResult.keys()]).map(cellSetKey => ({
122
+ const groupSummaries = Array.from(summarizedResult.keys()).map(cellSetKey => ({
123
123
  key: cellSetKey,
124
- value: ([...summarizedResult.get(cellSetKey).keys()]).map(sampleSetKey => ({
124
+ value: Array.from(summarizedResult.get(cellSetKey).keys()).map(sampleSetKey => ({
125
125
  key: sampleSetKey,
126
126
  value: summarizedResult.get(cellSetKey).get(sampleSetKey),
127
127
  })),
package/src/expr-hooks.test.js CHANGED
@@ -90,8 +90,8 @@ describe('Utility functions for processing expression data for statistical plots
90
90
  );
91
91
  const summaryResult = summarizeStratifiedExpressionData(aggregateData, true);
92
92
 
93
- expect([...summaryResult.keys()]).toEqual([['Cell type', 'T cell'], ['Cell type', 'B cell']]);
94
- expect([...summaryResult.get(['Cell type', 'T cell']).keys()]).toEqual([['Clinical groups', 'AKI'], ['Clinical groups', 'CKD']]);
93
+ expect(Array.from(summaryResult.keys())).toEqual([['Cell type', 'T cell'], ['Cell type', 'B cell']]);
94
+ expect(Array.from(summaryResult.get(['Cell type', 'T cell']).keys())).toEqual([['Clinical groups', 'AKI'], ['Clinical groups', 'CKD']]);
95
95
  expect(Object.keys(summaryResult.get(['Cell type', 'T cell']).get(['Clinical groups', 'AKI']))).toEqual([
96
96
  'quartiles',
97
97
  'range',