@vitessce/statistical-plots 3.2.1 → 3.3.0

package/dist/index.js

@@ -955,6 +955,7 @@ const DataType$1 = {
 const FileType$1 = {
   // Joint file types
   ANNDATA_ZARR: "anndata.zarr",
+  SPATIALDATA_ZARR: "spatialdata.zarr",
   // Atomic file types
   OBS_EMBEDDING_CSV: "obsEmbedding.csv",
   OBS_SPOTS_CSV: "obsSpots.csv",
@@ -977,6 +978,16 @@ const FileType$1 = {
   OBS_SEGMENTATIONS_ANNDATA_ZARR: "obsSegmentations.anndata.zarr",
   OBS_LABELS_ANNDATA_ZARR: "obsLabels.anndata.zarr",
   FEATURE_LABELS_ANNDATA_ZARR: "featureLabels.anndata.zarr",
+  // SpatialData
+  IMAGE_SPATIALDATA_ZARR: "image.spatialdata.zarr",
+  LABELS_SPATIALDATA_ZARR: "labels.spatialdata.zarr",
+  SHAPES_SPATIALDATA_ZARR: "shapes.spatialdata.zarr",
+  OBS_FEATURE_MATRIX_SPATIALDATA_ZARR: "obsFeatureMatrix.spatialdata.zarr",
+  OBS_SETS_SPATIALDATA_ZARR: "obsSets.spatialdata.zarr",
+  OBS_SPOTS_SPATIALDATA_ZARR: "obsSpots.spatialdata.zarr",
+  // TODO:
+  // OBS_POINTS_SPATIALDATA_ZARR: 'obsPoints.spatialdata.zarr',
+  // OBS_LOCATIONS_SPATIALDATA_ZARR: 'obsLocations.spatialdata.zarr',
   // MuData
   OBS_FEATURE_MATRIX_MUDATA_ZARR: "obsFeatureMatrix.mudata.zarr",
   OBS_SETS_MUDATA_ZARR: "obsSets.mudata.zarr",
@@ -10653,9 +10664,30 @@ z.object({
   offsetsUrl: z.string().optional(),
   coordinateTransformations: omeCoordinateTransformations.optional()
 });
-z.object({
+const imageOmeZarrSchema = z.object({
   coordinateTransformations: omeCoordinateTransformations.optional()
 });
+imageOmeZarrSchema.extend({
+  path: z.string()
+});
+z.object({
+  path: z.string()
+});
+z.object({
+  path: z.string()
+});
+z.object({
+  path: z.string(),
+  tablePath: z.string().optional().describe("The path to a table which annotates the spots. If available but not specified, the spot identifiers may not be aligned with associated tabular data as expected.")
+});
+annDataObsFeatureMatrix.extend({
+  region: z.string().describe("The name of a region to use to filter instances (i.e., rows) in the table").optional()
+});
+z.object({
+  region: z.string().describe("The name of a region to use to filter instances (i.e., rows) in the table").optional(),
+  tablePath: z.string().optional().describe("The path to a table which contains the index for the set values."),
+  obsSets: annDataObsSets
+});
 z.object({
   obsIndex: z.string(),
   obsEmbedding: z.array(z.string()).length(2)
@@ -17465,9 +17497,9 @@ const schemePlasma = [[13, 8, 135], [16, 7, 136], [19, 7, 137], [22, 7, 138], [2
 function rgbSpline$1(spline) {
   return (colors2) => {
     const n = colors2.length;
-    let r3 = new Array(n);
-    let g = new Array(n);
-    let b2 = new Array(n);
+    const r3 = new Array(n);
+    const g = new Array(n);
+    const b2 = new Array(n);
     let i;
     let color2;
     for (i = 0; i < n; ++i) {
@@ -17476,10 +17508,10 @@ function rgbSpline$1(spline) {
       g[i] = color2[1] || 0;
       b2[i] = color2[2] || 0;
     }
-    r3 = spline(r3);
-    g = spline(g);
-    b2 = spline(b2);
-    return (t4) => [r3(t4), g(t4), b2(t4)];
+    const rFunc = spline(r3);
+    const gFunc = spline(g);
+    const bFunc = spline(b2);
+    return (t4) => [rFunc(t4), gFunc(t4), bFunc(t4)];
   };
 }
 function basis$2(values2) {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/statistical-plots",
-  "version": "3.2.1",
+  "version": "3.3.0",
   "author": "Gehlenborg Lab",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -20,11 +20,11 @@
     "d3-array": "^2.4.0",
     "lodash-es": "^4.17.21",
     "react-aria": "^3.28.0",
-    "@vitessce/constants-internal": "3.2.1",
-    "@vitessce/sets-utils": "3.2.1",
-    "@vitessce/utils": "3.2.1",
-    "@vitessce/vega": "3.2.1",
-    "@vitessce/vit-s": "3.2.1"
+    "@vitessce/constants-internal": "3.3.0",
+    "@vitessce/sets-utils": "3.3.0",
+    "@vitessce/vega": "3.3.0",
+    "@vitessce/utils": "3.3.0",
+    "@vitessce/vit-s": "3.3.0"
   },
   "devDependencies": {
     "react": "^18.0.0",