@vitessce/spatial-utils 3.6.13 → 3.6.15

package/dist/{deflate-TxuAgoYJ.js → deflate-CGOn-uf0.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { B as BaseDecoder } from "./index-B7UQn9SL.js";
+import { B as BaseDecoder } from "./index-DNlaWdqD.js";
 class DeflateDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return inflate_1(new Uint8Array(buffer)).buffer;

package/dist/{index-B7UQn9SL.js → index-DNlaWdqD.js}

@@ -120366,22 +120366,22 @@ function addDecoder(cases, importFn) {
   }
   cases.forEach((c) => registry$2.set(c, importFn));
 }
-addDecoder([void 0, 1], () => import("./raw-NP8gx4mT.js").then((m) => m.default));
-addDecoder(5, () => import("./lzw-CEZtZPvs.js").then((m) => m.default));
+addDecoder([void 0, 1], () => import("./raw-Bss46i_c.js").then((m) => m.default));
+addDecoder(5, () => import("./lzw-DkntU-ha.js").then((m) => m.default));
 addDecoder(6, () => {
   throw new Error("old style JPEG compression is not supported.");
 });
-addDecoder(7, () => import("./jpeg-C55SiNtf.js").then((m) => m.default));
-addDecoder([8, 32946], () => import("./deflate-TxuAgoYJ.js").then((m) => m.default));
-addDecoder(32773, () => import("./packbits-BDxIgeb9.js").then((m) => m.default));
+addDecoder(7, () => import("./jpeg-DaGR7vcd.js").then((m) => m.default));
+addDecoder([8, 32946], () => import("./deflate-CGOn-uf0.js").then((m) => m.default));
+addDecoder(32773, () => import("./packbits-DxfeCzu5.js").then((m) => m.default));
 addDecoder(
   34887,
-  () => import("./lerc-cC8m0WBJ.js").then(async (m) => {
+  () => import("./lerc-CMrT9aqC.js").then(async (m) => {
     await m.zstd.init();
     return m;
   }).then((m) => m.default)
 );
-addDecoder(50001, () => import("./webimage-BMtq3qgy.js").then((m) => m.default));
+addDecoder(50001, () => import("./webimage-CBrq6HV-.js").then((m) => m.default));
 function decodeRowAcc(row, stride) {
   let length2 = row.length - stride;
   let offset = 0;
@@ -134131,10 +134131,10 @@ function multiSetsToTextureData(multiFeatureValues, multiMatrixObsIndex, setColo
   channelIsSetColorMode.forEach((isSetColorMode, channelIndex) => {
     var _a3, _b2, _c2, _d;
     if (isSetColorMode) {
-      totalColorsLength += (((_b2 = (_a3 = setColorValues[channelIndex]) == null ? void 0 : _a3.setColors) == null ? void 0 : _b2.length) || 0) * 3;
+      totalColorsLength += (((_b2 = (_a3 = setColorValues[channelIndex]) == null ? void 0 : _a3.setColors) == null ? void 0 : _b2.length) ?? 0) * 3;
       totalValuesLength += ((_c2 = setColorValues[channelIndex]) == null ? void 0 : _c2.obsIndex) ? max(setColorValues[channelIndex].obsIndex.map((d) => parseInt(d))) : 0;
     } else {
-      totalValuesLength += multiMatrixObsIndex[channelIndex] ? max(multiMatrixObsIndex[channelIndex].map((d) => parseInt(d))) : ((_d = multiFeatureValues[channelIndex]) == null ? void 0 : _d.length) || 0;
+      totalValuesLength += multiMatrixObsIndex[channelIndex] ? max(multiMatrixObsIndex[channelIndex].map((d) => parseInt(d))) : ((_d = multiFeatureValues[channelIndex]) == null ? void 0 : _d.length) ?? 0;
     }
   });
   const valueTexHeight = Math.max(2, Math.ceil(totalValuesLength / texSize));
@@ -134155,7 +134155,7 @@ function multiSetsToTextureData(multiFeatureValues, multiMatrixObsIndex, setColo
     const matrixObsIndex = multiMatrixObsIndex[channelIndex];
     const bitmaskValueIsIndex = matrixObsIndex === null;
     if (isSetColorMode) {
-      const { setColorIndices, setColors, obsIndex } = setColorValues[channelIndex] || {};
+      const { setColorIndices, setColors, obsIndex } = setColorValues[channelIndex] ?? {};
       if (setColorIndices && setColors && obsIndex) {
         for (let i2 = 0; i2 < obsIndex.length; i2++) {
           let obsId = String(i2 + 1);
@@ -134179,7 +134179,7 @@ function multiSetsToTextureData(multiFeatureValues, multiMatrixObsIndex, setColo
       indexOffset += (obsIndex == null ? void 0 : obsIndex.length) || 0;
       colorOffset += (setColors == null ? void 0 : setColors.length) || 0;
     } else {
-      const featureArr = multiFeatureValues[channelIndex];
+      const featureArr = multiFeatureValues[channelIndex] ?? [];
       const normalizedFeatureArr = normalize(featureArr);
       if (!bitmaskValueIsIndex && matrixObsIndex) {
         for (let i2 = 0; i2 < matrixObsIndex.length; i2++) {
@@ -138274,18 +138274,6 @@ function coordinateTransformationsToMatrixForSpatialData(ngffMetadata, targetCoo
   );
   return coordinateTransformationsToMatrix(normalizedTransformations, normAxes);
 }
-class NodeNotFoundError extends Error {
-  constructor(context, options = {}) {
-    super(`Node not found: ${context}`, options);
-    this.name = "NodeNotFoundError";
-  }
-}
-class KeyError extends Error {
-  constructor(path) {
-    super(`Missing key: ${path}`);
-    this.name = "KeyError";
-  }
-}
 class BoolArray {
   constructor(x, byteOffset, length2) {
     __privateAdd(this, _bytes);
@@ -138803,7 +138791,7 @@ const _JsonCodec = class _JsonCodec {
     const items = Array.from(buf.data);
     items.push("|O");
     items.push(buf.shape);
-    let replacer = void 0;
+    let replacer;
     if (replacer_functions.length) {
       replacer = (key, value) => {
         let new_value = value;
@@ -139066,6 +139054,18 @@ async function load_codecs(chunk_meta) {
 function is_typed_array_like_meta(meta) {
   return meta.data_type !== "v2:object";
 }
+class NodeNotFoundError extends Error {
+  constructor(context, options = {}) {
+    super(`Node not found: ${context}`, options);
+    this.name = "NodeNotFoundError";
+  }
+}
+class KeyError extends Error {
+  constructor(path) {
+    super(`Missing key: ${path}`);
+    this.name = "KeyError";
+  }
+}
 const MAX_BIG_UINT = 18446744073709551615n;
 function create_sharded_chunk_getter(location, shard_shape, encode_shard_key, sharding_config) {
   assert$1(location.store.getRange, "Store does not support range requests");
@@ -139242,105 +139242,6 @@ let Array$1 = (_c = class extends (_a = Location, _a) {
     return is_dtype(this.dtype, query);
   }
 }, _metadata2 = new WeakMap(), _c);
-let VERSION_COUNTER = create_version_counter();
-function create_version_counter() {
-  let version_counts = /* @__PURE__ */ new WeakMap();
-  function get_counts(store) {
-    let counts = version_counts.get(store) ?? { v2: 0, v3: 0 };
-    version_counts.set(store, counts);
-    return counts;
-  }
-  return {
-    increment(store, version2) {
-      get_counts(store)[version2] += 1;
-    },
-    version_max(store) {
-      let counts = get_counts(store);
-      return counts.v3 > counts.v2 ? "v3" : "v2";
-    }
-  };
-}
-async function load_attrs(location) {
-  let meta_bytes = await location.store.get(location.resolve(".zattrs").path);
-  if (!meta_bytes)
-    return {};
-  return json_decode_object(meta_bytes);
-}
-async function open_v2(location, options = {}) {
-  let loc = "store" in location ? location : new Location(location);
-  let attrs = {};
-  if (options.attrs ?? true)
-    attrs = await load_attrs(loc);
-  if (options.kind === "array")
-    return open_array_v2(loc, attrs);
-  if (options.kind === "group")
-    return open_group_v2(loc, attrs);
-  return open_array_v2(loc, attrs).catch((err2) => {
-    rethrow_unless(err2, NodeNotFoundError);
-    return open_group_v2(loc, attrs);
-  });
-}
-async function open_array_v2(location, attrs) {
-  let { path } = location.resolve(".zarray");
-  let meta = await location.store.get(path);
-  if (!meta) {
-    throw new NodeNotFoundError("v2 array", {
-      cause: new KeyError(path)
-    });
-  }
-  VERSION_COUNTER.increment(location.store, "v2");
-  return new Array$1(location.store, location.path, v2_to_v3_array_metadata(json_decode_object(meta), attrs));
-}
-async function open_group_v2(location, attrs) {
-  let { path } = location.resolve(".zgroup");
-  let meta = await location.store.get(path);
-  if (!meta) {
-    throw new NodeNotFoundError("v2 group", {
-      cause: new KeyError(path)
-    });
-  }
-  VERSION_COUNTER.increment(location.store, "v2");
-  return new Group(location.store, location.path, v2_to_v3_group_metadata(json_decode_object(meta), attrs));
-}
-async function _open_v3(location) {
-  let { store, path } = location.resolve("zarr.json");
-  let meta = await location.store.get(path);
-  if (!meta) {
-    throw new NodeNotFoundError("v3 array or group", {
-      cause: new KeyError(path)
-    });
-  }
-  let meta_doc = json_decode_object(meta);
-  if (meta_doc.node_type === "array") {
-    meta_doc.fill_value = ensure_correct_scalar(meta_doc);
-  }
-  return meta_doc.node_type === "array" ? new Array$1(store, location.path, meta_doc) : new Group(store, location.path, meta_doc);
-}
-async function open_v3(location, options = {}) {
-  let loc = "store" in location ? location : new Location(location);
-  let node2 = await _open_v3(loc);
-  VERSION_COUNTER.increment(loc.store, "v3");
-  if (options.kind === void 0)
-    return node2;
-  if (options.kind === "array" && node2 instanceof Array$1)
-    return node2;
-  if (options.kind === "group" && node2 instanceof Group)
-    return node2;
-  let kind = node2 instanceof Array$1 ? "array" : "group";
-  throw new Error(`Expected node of kind ${options.kind}, found ${kind}.`);
-}
-async function open(location, options = {}) {
-  let store = "store" in location ? location.store : location;
-  let version_max = VERSION_COUNTER.version_max(store);
-  let open_primary = version_max === "v2" ? open.v2 : open.v3;
-  let open_secondary = version_max === "v2" ? open.v3 : open.v2;
-  return open_primary(location, options).catch((err2) => {
-    rethrow_unless(err2, NodeNotFoundError);
-    return open_secondary(location, options);
-  });
-}
-open.v2 = open_v2;
-open.v3 = open_v3;
 function* range(start, stop, step = 1) {
   if (stop === void 0) {
     stop = start;
@@ -139721,6 +139622,105 @@ function set_from_chunk_binary(dest, src, bytes_per_element2, projections) {
     }, bytes_per_element2, projs);
   }
 }
+let VERSION_COUNTER = create_version_counter();
+function create_version_counter() {
+  let version_counts = /* @__PURE__ */ new WeakMap();
+  function get_counts(store) {
+    let counts = version_counts.get(store) ?? { v2: 0, v3: 0 };
+    version_counts.set(store, counts);
+    return counts;
+  }
+  return {
+    increment(store, version2) {
+      get_counts(store)[version2] += 1;
+    },
+    version_max(store) {
+      let counts = get_counts(store);
+      return counts.v3 > counts.v2 ? "v3" : "v2";
+    }
+  };
+}
+async function load_attrs(location) {
+  let meta_bytes = await location.store.get(location.resolve(".zattrs").path);
+  if (!meta_bytes)
+    return {};
+  return json_decode_object(meta_bytes);
+}
+async function open_v2(location, options = {}) {
+  let loc = "store" in location ? location : new Location(location);
+  let attrs = {};
+  if (options.attrs ?? true)
+    attrs = await load_attrs(loc);
+  if (options.kind === "array")
+    return open_array_v2(loc, attrs);
+  if (options.kind === "group")
+    return open_group_v2(loc, attrs);
+  return open_array_v2(loc, attrs).catch((err2) => {
+    rethrow_unless(err2, NodeNotFoundError);
+    return open_group_v2(loc, attrs);
+  });
+}
+async function open_array_v2(location, attrs) {
+  let { path } = location.resolve(".zarray");
+  let meta = await location.store.get(path);
+  if (!meta) {
+    throw new NodeNotFoundError("v2 array", {
+      cause: new KeyError(path)
+    });
+  }
+  VERSION_COUNTER.increment(location.store, "v2");
+  return new Array$1(location.store, location.path, v2_to_v3_array_metadata(json_decode_object(meta), attrs));
+}
+async function open_group_v2(location, attrs) {
+  let { path } = location.resolve(".zgroup");
+  let meta = await location.store.get(path);
+  if (!meta) {
+    throw new NodeNotFoundError("v2 group", {
+      cause: new KeyError(path)
+    });
+  }
+  VERSION_COUNTER.increment(location.store, "v2");
+  return new Group(location.store, location.path, v2_to_v3_group_metadata(json_decode_object(meta), attrs));
+}
+async function _open_v3(location) {
+  let { store, path } = location.resolve("zarr.json");
+  let meta = await location.store.get(path);
+  if (!meta) {
+    throw new NodeNotFoundError("v3 array or group", {
+      cause: new KeyError(path)
+    });
+  }
+  let meta_doc = json_decode_object(meta);
+  if (meta_doc.node_type === "array") {
+    meta_doc.fill_value = ensure_correct_scalar(meta_doc);
+  }
+  return meta_doc.node_type === "array" ? new Array$1(store, location.path, meta_doc) : new Group(store, location.path, meta_doc);
+}
+async function open_v3(location, options = {}) {
+  let loc = "store" in location ? location : new Location(location);
+  let node2 = await _open_v3(loc);
+  VERSION_COUNTER.increment(loc.store, "v3");
+  if (options.kind === void 0)
+    return node2;
+  if (options.kind === "array" && node2 instanceof Array$1)
+    return node2;
+  if (options.kind === "group" && node2 instanceof Group)
+    return node2;
+  let kind = node2 instanceof Array$1 ? "array" : "group";
+  throw new Error(`Expected node of kind ${options.kind}, found ${kind}.`);
+}
+async function open(location, options = {}) {
+  let store = "store" in location ? location.store : location;
+  let version_max = VERSION_COUNTER.version_max(store);
+  let open_primary = version_max === "v2" ? open.v2 : open.v3;
+  let open_secondary = version_max === "v2" ? open.v3 : open.v2;
+  return open_primary(location, options).catch((err2) => {
+    rethrow_unless(err2, NodeNotFoundError);
+    return open_secondary(location, options);
+  });
+}
+open.v2 = open_v2;
+open.v3 = open_v3;
 function getV2DataType(dtype) {
   const mapping = {
     int8: "|i1",

package/dist/index.js

@@ -1,4 +1,4 @@
-import { D, e, a, b, c, d, H, G, Z, E, s, n, o, F, C, z, l, m, A, y, h, r, w, q, i, f, j, k, v, u, t, p, x } from "./index-B7UQn9SL.js";
+import { D, e, a, b, c, d, H, G, Z, E, s, n, o, F, C, z, l, m, A, y, h, r, w, q, i, f, j, k, v, u, t, p, x } from "./index-DNlaWdqD.js";
 export {
   D as DEFAULT_CELLS_LAYER,
   e as DEFAULT_LAYER_TYPE_ORDERING,

package/dist/{jpeg-C55SiNtf.js → jpeg-DaGR7vcd.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-B7UQn9SL.js";
+import { B as BaseDecoder } from "./index-DNlaWdqD.js";
 const dctZigZag = new Int32Array([
   0,
   1,

package/dist/{lerc-cC8m0WBJ.js → lerc-CMrT9aqC.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-B7UQn9SL.js";
+import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-DNlaWdqD.js";
 const LercParameters = {
   AddCompression: 1
 };

package/dist/{lzw-CEZtZPvs.js → lzw-DkntU-ha.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-B7UQn9SL.js";
+import { B as BaseDecoder } from "./index-DNlaWdqD.js";
 const MIN_BITS = 9;
 const CLEAR_CODE = 256;
 const EOI_CODE = 257;

package/dist/{packbits-BDxIgeb9.js → packbits-DxfeCzu5.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-B7UQn9SL.js";
+import { B as BaseDecoder } from "./index-DNlaWdqD.js";
 class PackbitsDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     const dataView = new DataView(buffer);

package/dist/{raw-NP8gx4mT.js → raw-Bss46i_c.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-B7UQn9SL.js";
+import { B as BaseDecoder } from "./index-DNlaWdqD.js";
 class RawDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return buffer;

package/dist/{webimage-BMtq3qgy.js → webimage-CBrq6HV-.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-B7UQn9SL.js";
+import { B as BaseDecoder } from "./index-DNlaWdqD.js";
 class WebImageDecoder extends BaseDecoder {
   constructor() {
     super();

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/spatial-utils",
-  "version": "3.6.13",
+  "version": "3.6.15",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -17,16 +17,16 @@
   ],
   "dependencies": {
     "lodash-es": "^4.17.21",
-    "zarrita": "0.5.2",
+    "zarrita": "0.5.3",
     "math.gl": "^3.5.6",
     "mathjs": "^9.2.0",
     "internmap": "^2.0.3",
-    "@vitessce/gl": "3.6.13",
-    "@vitessce/utils": "3.6.13",
-    "@vitessce/zarr-utils": "3.6.13",
-    "@vitessce/constants-internal": "3.6.13",
-    "@vitessce/globals": "3.6.13",
-    "@vitessce/error": "3.6.13"
+    "@vitessce/gl": "3.6.15",
+    "@vitessce/utils": "3.6.15",
+    "@vitessce/zarr-utils": "3.6.15",
+    "@vitessce/constants-internal": "3.6.15",
+    "@vitessce/globals": "3.6.15",
+    "@vitessce/error": "3.6.15"
   },
   "scripts": {
     "bundle": "pnpm exec vite build -c ../../../scripts/vite.config.js",