@vitessce/spatial-utils 3.5.10 → 3.5.12

package/dist/{deflate-3a3dd9af.js → deflate-016629a0.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
-import { B as BaseDecoder } from "./index-8c2c6fcf.js";
+import { B as BaseDecoder } from "./index-d69469a9.js";
 import "react";
 class DeflateDecoder extends BaseDecoder {
   decodeBlock(buffer) {

package/dist/{index-8c2c6fcf.js → index-d69469a9.js}

@@ -124530,8 +124530,15 @@ class SelectionLayer extends CompositeLayer {
         if (!nodePolygonContainsSelectedPolygon && !nodePolygonWithinSelectedPolygon && !nodePolygonOverlapsSelectedPolgyon) {
           return true;
         }
-        if (node2.data && booleanPointInPolygon$1(point$1([].slice.call(getObsCoords(node2.data))), selectedPolygon)) {
-          pickingInfos.push(node2.data);
+        if (node2.data) {
+          let current = node2;
+          while (current) {
+            const pointCoords = [].slice.call(getObsCoords(current.data));
+            if (booleanPointInPolygon$1(point$1(pointCoords), selectedPolygon)) {
+              pickingInfos.push(current.data);
+            }
+            current = current.next;
+          }
         }
         return false;
       });
@@ -125709,16 +125716,16 @@ function addDecoder(cases, importFn) {
   }
   cases.forEach((c) => registry$2.set(c, importFn));
 }
-addDecoder([void 0, 1], () => import("./raw-3781811e.js").then((m) => m.default));
-addDecoder(5, () => import("./lzw-b5e40415.js").then((m) => m.default));
+addDecoder([void 0, 1], () => import("./raw-a653b43b.js").then((m) => m.default));
+addDecoder(5, () => import("./lzw-3f280cbb.js").then((m) => m.default));
 addDecoder(6, () => {
   throw new Error("old style JPEG compression is not supported.");
 });
-addDecoder(7, () => import("./jpeg-e796db3c.js").then((m) => m.default));
-addDecoder([8, 32946], () => import("./deflate-3a3dd9af.js").then((m) => m.default));
-addDecoder(32773, () => import("./packbits-277eb59e.js").then((m) => m.default));
-addDecoder(34887, () => import("./lerc-2a9be36c.js").then((m) => m.default));
-addDecoder(50001, () => import("./webimage-92bb7c8d.js").then((m) => m.default));
+addDecoder(7, () => import("./jpeg-e53ed070.js").then((m) => m.default));
+addDecoder([8, 32946], () => import("./deflate-016629a0.js").then((m) => m.default));
+addDecoder(32773, () => import("./packbits-4f66ac8d.js").then((m) => m.default));
+addDecoder(34887, () => import("./lerc-8bb755c4.js").then((m) => m.default));
+addDecoder(50001, () => import("./webimage-914786f2.js").then((m) => m.default));
 function decodeRowAcc(row, stride) {
   let length2 = row.length - stride;
   let offset = 0;
@@ -140363,9 +140370,6 @@ function physicalSizeToMatrix(xSize, ySize, zSize, xUnit, yUnit, zUnit) {
     sizes.push(unit(`${zSize} ${zUnit}`.replace("µ", "u")));
   }
   const scale2 = sizes.map((i2) => divide(i2, unit("1 um")));
-  if (!sizes[0].equals(sizes[1])) {
-    scale2[1] = divide(sizes[1], sizes[0]);
-  }
   if (!scale2[2]) {
     scale2[2] = 1;
   }

package/dist/index.js

@@ -1,4 +1,4 @@
-import { D, e, a, b, c, d, E, G, Z, A, r, n, C, z, x, l, m, y, w, h, q, u, o, i, f, j, k, t, s, p, v } from "./index-8c2c6fcf.js";
+import { D, e, a, b, c, d, E, G, Z, A, r, n, C, z, x, l, m, y, w, h, q, u, o, i, f, j, k, t, s, p, v } from "./index-d69469a9.js";
 import "react";
 export {
   D as DEFAULT_CELLS_LAYER,

package/dist/{jpeg-e796db3c.js → jpeg-e53ed070.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-8c2c6fcf.js";
+import { B as BaseDecoder } from "./index-d69469a9.js";
 import "react";
 const dctZigZag = new Int32Array([
   0,

package/dist/{lerc-2a9be36c.js → lerc-8bb755c4.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
-import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-8c2c6fcf.js";
+import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-d69469a9.js";
 import "react";
 const LercParameters = {
   Version: 0,

package/dist/{lzw-b5e40415.js → lzw-3f280cbb.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-8c2c6fcf.js";
+import { B as BaseDecoder } from "./index-d69469a9.js";
 import "react";
 const MIN_BITS = 9;
 const CLEAR_CODE = 256;

package/dist/{packbits-277eb59e.js → packbits-4f66ac8d.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-8c2c6fcf.js";
+import { B as BaseDecoder } from "./index-d69469a9.js";
 import "react";
 class PackbitsDecoder extends BaseDecoder {
   decodeBlock(buffer) {

package/dist/{raw-3781811e.js → raw-a653b43b.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-8c2c6fcf.js";
+import { B as BaseDecoder } from "./index-d69469a9.js";
 import "react";
 class RawDecoder extends BaseDecoder {
   decodeBlock(buffer) {

package/dist/{webimage-92bb7c8d.js → webimage-914786f2.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-8c2c6fcf.js";
+import { B as BaseDecoder } from "./index-d69469a9.js";
 import "react";
 class WebImageDecoder extends BaseDecoder {
   constructor() {

package/dist-tsc/spatial.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"spatial.d.ts","sourceRoot":"","sources":["../src/spatial.js"],"names":[],"mappings":"AAOA;;;;;;GAMG;AACH,4CAJW,MAAM,SACN,MAAM,GAAG,SAAS,GAChB,MAAM,CAMlB;AAoCD;;;;GAIG;AACH,8BAHW,MAAM,YACN,KAAK,GAAC,IAAI,WAiBpB;AAID,sHAkCC;AAiHD;;GAEG;AACH,qCAFW,KAAK,CAAE,MAAM,CAAC,WAKxB;AAED;;;;;;GAMG;AACH,gDALW,MAAM,eAEJ,MAAM,EAAE,CAuCpB;AAED;;;;;;;;;GASG;AACH,gEAJW,MAAM,EAAE,sBAER,CAAC,MAAM,EAAE,GAAC,IAAI,CAAC,+CAuEzB;AASD;;;IAuBC;AAED,uDAQC;AAED;;;;;;;;GAQG;AACH,6EANW,MAAM,EAAE,GAAC,SAAS,QAElB,MAAM,EAAE,GAAC,SAAS,GAEhB,OAAO,CA4CnB;AAED,6CAOC;AAED;;;;;;;;;GASG;AACH,8EANW,MAAM,EAAE,GAAC,SAAS,YAGlB,MAAM,EAAE,GACN,MAAM,EAAE,CAoDpB;AAvfM;;;;;EAYN;AAEM,yEAkBN;wBAnDuB,SAAS"}
+{"version":3,"file":"spatial.d.ts","sourceRoot":"","sources":["../src/spatial.js"],"names":[],"mappings":"AAOA;;;;;;GAMG;AACH,4CAJW,MAAM,SACN,MAAM,GAAG,SAAS,GAChB,MAAM,CAMlB;AAoCD;;;;GAIG;AACH,8BAHW,MAAM,YACN,KAAK,GAAC,IAAI,WAiBpB;AAID,sHAmCC;AAiHD;;GAEG;AACH,qCAFW,KAAK,CAAE,MAAM,CAAC,WAKxB;AAED;;;;;;GAMG;AACH,gDALW,MAAM,eAEJ,MAAM,EAAE,CAuCpB;AAED;;;;;;;;;GASG;AACH,gEAJW,MAAM,EAAE,sBAER,CAAC,MAAM,EAAE,GAAC,IAAI,CAAC,+CAuEzB;AASD;;;IAuBC;AAED,uDAQC;AAED;;;;;;;;GAQG;AACH,6EANW,MAAM,EAAE,GAAC,SAAS,QAElB,MAAM,EAAE,GAAC,SAAS,GAEhB,OAAO,CA4CnB;AAED,6CAOC;AAED;;;;;;;;;GASG;AACH,8EANW,MAAM,EAAE,GAAC,SAAS,YAGlB,MAAM,EAAE,GACN,MAAM,EAAE,CAoDpB;AAxfM;;;;;EAYN;AAEM,yEAkBN;wBAnDuB,SAAS"}

package/dist-tsc/spatial.js

@@ -81,10 +81,11 @@ export function physicalSizeToMatrix(xSize, ySize, zSize, xUnit, yUnit, zUnit) {
     const scale = sizes.map(i => divide(i, unit('1 um')));
     // TODO: is this still needed
     // sizes are special objects with own equals method - see `unit` in declaration
-    if (!sizes[0].equals(sizes[1])) {
-        // Handle scaling in the Y direction for non-square pixels
-        scale[1] = divide(sizes[1], sizes[0]);
-    }
+    // This messess the dimensions when the x & y are little different (e.g., for the geomx data)
+    // if (!sizes[0].equals(sizes[1])) {
+    //   // Handle scaling in the Y direction for non-square pixels
+    //   scale[1] = divide(sizes[1], sizes[0]);
+    // }
     // END TODO: is this still needed
     // Add in z dimension needed for Matrix4 scale API.
     if (!scale[2]) {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/spatial-utils",
-  "version": "3.5.10",
+  "version": "3.5.12",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -20,11 +20,11 @@
     "zarrita": "0.4.0",
     "math.gl": "^3.5.6",
     "mathjs": "^9.2.0",
-    "@vitessce/gl": "3.5.10",
-    "@vitessce/utils": "3.5.10",
-    "@vitessce/zarr-utils": "3.5.10",
-    "@vitessce/constants-internal": "3.5.10",
-    "@vitessce/globals": "3.5.10"
+    "@vitessce/gl": "3.5.12",
+    "@vitessce/utils": "3.5.12",
+    "@vitessce/zarr-utils": "3.5.12",
+    "@vitessce/constants-internal": "3.5.12",
+    "@vitessce/globals": "3.5.12"
   },
   "scripts": {
     "bundle": "pnpm exec vite build -c ../../../scripts/vite.config.js",

package/src/spatial.js

@@ -95,10 +95,11 @@ export function physicalSizeToMatrix(xSize, ySize, zSize, xUnit, yUnit, zUnit) {
 
   // TODO: is this still needed
   // sizes are special objects with own equals method - see `unit` in declaration
-  if (!sizes[0].equals(sizes[1])) {
-    // Handle scaling in the Y direction for non-square pixels
-    scale[1] = divide(sizes[1], sizes[0]);
-  }
+  // This messess the dimensions when the x & y are little different (e.g., for the geomx data)
+  // if (!sizes[0].equals(sizes[1])) {
+  //   // Handle scaling in the Y direction for non-square pixels
+  //   scale[1] = divide(sizes[1], sizes[0]);
+  // }
   // END TODO: is this still needed
 
   // Add in z dimension needed for Matrix4 scale API.