@vitessce/scatterplot-gating 3.6.3 → 3.6.5

package/dist/{deflate-BjzQymM8.js → deflate-0khwfeEa.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { B as BaseDecoder } from "./index-CtYW3uYF.js";
+import { B as BaseDecoder } from "./index-Ceq7OIVC.js";
 class DeflateDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return inflate_1(new Uint8Array(buffer)).buffer;

package/dist/{index-CtYW3uYF.js → index-Ceq7OIVC.js}

@@ -9491,6 +9491,7 @@ const FileType$1 = {
   ANNDATA_ZARR_ZIP: "anndata.zarr.zip",
   ANNDATA_H5AD: "anndata.h5ad",
   SPATIALDATA_ZARR: "spatialdata.zarr",
+  SPATIALDATA_ZARR_ZIP: "spatialdata.zarr.zip",
   // Atomic file types
   OBS_EMBEDDING_CSV: "obsEmbedding.csv",
   OBS_SPOTS_CSV: "obsSpots.csv",
@@ -9571,6 +9572,14 @@ const FileType$1 = {
   // TODO:
   // OBS_POINTS_SPATIALDATA_ZARR: 'obsPoints.spatialdata.zarr',
   // OBS_LOCATIONS_SPATIALDATA_ZARR: 'obsLocations.spatialdata.zarr',
+  // SpatialData - zipped
+  IMAGE_SPATIALDATA_ZARR_ZIP: "image.spatialdata.zarr.zip",
+  LABELS_SPATIALDATA_ZARR_ZIP: "labels.spatialdata.zarr.zip",
+  SHAPES_SPATIALDATA_ZARR_ZIP: "shapes.spatialdata.zarr.zip",
+  OBS_FEATURE_MATRIX_SPATIALDATA_ZARR_ZIP: "obsFeatureMatrix.spatialdata.zarr.zip",
+  OBS_SETS_SPATIALDATA_ZARR_ZIP: "obsSets.spatialdata.zarr.zip",
+  OBS_SPOTS_SPATIALDATA_ZARR_ZIP: "obsSpots.spatialdata.zarr.zip",
+  FEATURE_LABELS_SPATIALDATA_ZARR_ZIP: "featureLabels.spatialdata.zarr.zip",
   // MuData
   OBS_FEATURE_MATRIX_MUDATA_ZARR: "obsFeatureMatrix.mudata.zarr",
   OBS_SETS_MUDATA_ZARR: "obsSets.mudata.zarr",
@@ -9971,6 +9980,28 @@ const ViewHelpMapping = {
   },
   [FileType$1.OBS_SEGMENTATIONS_OME_ZARR]: {
     zip: FileType$1.OBS_SEGMENTATIONS_OME_ZARR_ZIP
+  },
+  // For SpatialData:
+  [FileType$1.IMAGE_SPATIALDATA_ZARR]: {
+    zip: FileType$1.IMAGE_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.LABELS_SPATIALDATA_ZARR]: {
+    zip: FileType$1.LABELS_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.SHAPES_SPATIALDATA_ZARR]: {
+    zip: FileType$1.SHAPES_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR]: {
+    zip: FileType$1.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.OBS_SETS_SPATIALDATA_ZARR]: {
+    zip: FileType$1.OBS_SETS_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.OBS_SPOTS_SPATIALDATA_ZARR]: {
+    zip: FileType$1.OBS_SPOTS_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.FEATURE_LABELS_SPATIALDATA_ZARR]: {
+    zip: FileType$1.FEATURE_LABELS_SPATIALDATA_ZARR_ZIP
   }
 });
 [
@@ -11091,6 +11122,7 @@ const anndataZarrSchema = z.object({
     z.array(annDataConvenienceFeatureLabelsItem)
   ]),
   obsFeatureMatrix: annDataObsFeatureMatrix,
+  obsFeatureColumns: annDataObsFeatureColumnsArr,
   obsSets: annDataObsSetsArr,
   obsSpots: annDataObsSpots,
   obsPoints: annDataObsPoints,
@@ -11108,12 +11140,17 @@ anndataZarrSchema.extend({
 z.object({
   // TODO: should `image` be a special schema
   // to allow specifying fileUid (like for embeddingType)?
-  // TODO: allow multiple images
+  // TODO: allow multiple images?
   image: imageSpatialdataSchema,
   // TODO: should this be a special schema
   // to allow specifying fileUid (like for embeddingType)?
-  // TODO: allow multiple labels
+  // TODO: allow multiple labels?
   labels: obsSegmentationsSpatialdataSchema,
+  // TODO: allow multiple shapes?
+  // TODO: unify labels and shapes to obsSegmentations,
+  // then distinguish in expand function based on
+  // "labels/*" vs. "shapes/*" in path?
+  shapes: obsSegmentationsSpatialdataSchema,
   obsFeatureMatrix: obsFeatureMatrixSpatialdataSchema,
   obsSpots: obsSpotsSpatialdataSchema,
   // TODO: obsPoints
@@ -123014,22 +123051,22 @@ function addDecoder(cases, importFn) {
   }
   cases.forEach((c2) => registry$1.set(c2, importFn));
 }
-addDecoder([void 0, 1], () => import("./raw-Dx-ICYFx.js").then((m2) => m2.default));
-addDecoder(5, () => import("./lzw-DEryNdqR.js").then((m2) => m2.default));
+addDecoder([void 0, 1], () => import("./raw-DtEUssqa.js").then((m2) => m2.default));
+addDecoder(5, () => import("./lzw-DxtPY-6B.js").then((m2) => m2.default));
 addDecoder(6, () => {
   throw new Error("old style JPEG compression is not supported.");
 });
-addDecoder(7, () => import("./jpeg-Ce518Uak.js").then((m2) => m2.default));
-addDecoder([8, 32946], () => import("./deflate-BjzQymM8.js").then((m2) => m2.default));
-addDecoder(32773, () => import("./packbits-DWz1DQXr.js").then((m2) => m2.default));
+addDecoder(7, () => import("./jpeg-BIWhN5Z_.js").then((m2) => m2.default));
+addDecoder([8, 32946], () => import("./deflate-0khwfeEa.js").then((m2) => m2.default));
+addDecoder(32773, () => import("./packbits-BwpCwQeA.js").then((m2) => m2.default));
 addDecoder(
   34887,
-  () => import("./lerc-BcQ6Ts6j.js").then(async (m2) => {
+  () => import("./lerc-F_eWR4uk.js").then(async (m2) => {
     await m2.zstd.init();
     return m2;
   }).then((m2) => m2.default)
 );
-addDecoder(50001, () => import("./webimage-ChihBi2A.js").then((m2) => m2.default));
+addDecoder(50001, () => import("./webimage-DTHl4ms3.js").then((m2) => m2.default));
 function decodeRowAcc(row, stride) {
   let length2 = row.length - stride;
   let offset2 = 0;

package/dist/index.js

@@ -1,4 +1,4 @@
-import { G } from "./index-CtYW3uYF.js";
+import { G } from "./index-Ceq7OIVC.js";
 export {
   G as GatingSubscriber
 };

package/dist/{jpeg-Ce518Uak.js → jpeg-BIWhN5Z_.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-CtYW3uYF.js";
+import { B as BaseDecoder } from "./index-Ceq7OIVC.js";
 const dctZigZag = new Int32Array([
   0,
   1,

package/dist/{lerc-BcQ6Ts6j.js → lerc-F_eWR4uk.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-CtYW3uYF.js";
+import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-Ceq7OIVC.js";
 const LercParameters = {
   AddCompression: 1
 };

package/dist/{lzw-DEryNdqR.js → lzw-DxtPY-6B.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-CtYW3uYF.js";
+import { B as BaseDecoder } from "./index-Ceq7OIVC.js";
 const MIN_BITS = 9;
 const CLEAR_CODE = 256;
 const EOI_CODE = 257;

package/dist/{packbits-DWz1DQXr.js → packbits-BwpCwQeA.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-CtYW3uYF.js";
+import { B as BaseDecoder } from "./index-Ceq7OIVC.js";
 class PackbitsDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     const dataView = new DataView(buffer);

package/dist/{raw-Dx-ICYFx.js → raw-DtEUssqa.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-CtYW3uYF.js";
+import { B as BaseDecoder } from "./index-Ceq7OIVC.js";
 class RawDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return buffer;

package/dist/{webimage-ChihBi2A.js → webimage-DTHl4ms3.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-CtYW3uYF.js";
+import { B as BaseDecoder } from "./index-Ceq7OIVC.js";
 class WebImageDecoder extends BaseDecoder {
   constructor() {
     super();

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/scatterplot-gating",
-  "version": "3.6.3",
+  "version": "3.6.5",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -19,12 +19,12 @@
     "d3-array": "^2.4.0",
     "lodash-es": "^4.17.21",
     "react-aria": "^3.28.0",
-    "@vitessce/styles": "3.6.3",
-    "@vitessce/constants-internal": "3.6.3",
-    "@vitessce/scatterplot": "3.6.3",
-    "@vitessce/sets-utils": "3.6.3",
-    "@vitessce/utils": "3.6.3",
-    "@vitessce/vit-s": "3.6.3"
+    "@vitessce/styles": "3.6.5",
+    "@vitessce/constants-internal": "3.6.5",
+    "@vitessce/scatterplot": "3.6.5",
+    "@vitessce/sets-utils": "3.6.5",
+    "@vitessce/utils": "3.6.5",
+    "@vitessce/vit-s": "3.6.5"
   },
   "devDependencies": {
     "react": "^18.0.0",