@vitessce/scatterplot-gating 3.4.11 → 3.4.14

package/dist/{deflate-d789a72d.js → deflate-cf02d134.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
-import { B as BaseDecoder } from "./index-c9b4cfce.js";
+import { B as BaseDecoder } from "./index-a7052125.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{index-c9b4cfce.js → index-a7052125.js}

@@ -11056,6 +11056,9 @@ const FileType$1 = {
   // OME-Zarr
   IMAGE_OME_ZARR: "image.ome-zarr",
   OBS_SEGMENTATIONS_OME_ZARR: "obsSegmentations.ome-zarr",
+  // OME-Zarr - Zipped
+  IMAGE_OME_ZARR_ZIP: "image.ome-zarr.zip",
+  OBS_SEGMENTATIONS_OME_ZARR_ZIP: "obsSegmentations.ome-zarr.zip",
   // AnnData
   OBS_FEATURE_MATRIX_ANNDATA_ZARR: "obsFeatureMatrix.anndata.zarr",
   OBS_FEATURE_COLUMNS_ANNDATA_ZARR: "obsFeatureColumns.anndata.zarr",
@@ -11162,6 +11165,7 @@ const CoordinationType$1 = {
   FEATURE_TYPE: "featureType",
   FEATURE_VALUE_TYPE: "featureValueType",
   OBS_LABELS_TYPE: "obsLabelsType",
+  FEATURE_LABELS_TYPE: "featureLabelsType",
   // Other types
   EMBEDDING_TYPE: "embeddingType",
   EMBEDDING_ZOOM: "embeddingZoom",
@@ -11971,7 +11975,7 @@ const annDataObsSetsArr = z.array(z.object({
   ]),
   scorePath: z.string().optional().describe("The location in the AnnData store for the set confidence scores, like 'obs/celltype_prediction_score.'")
 }));
-const annDataObsSets = z.object({
+z.object({
   obsSets: annDataObsSetsArr
 });
 const annDataObsFeatureColumnsArr = z.array(z.object({
@@ -12011,29 +12015,34 @@ const imageOmeZarrSchema = z.object({
 imageOmeZarrSchema.extend({
   obsTypesFromChannelNames: z.boolean().optional()
 });
-const imageSpatialdataSchema = imageOmeZarrSchema.extend({
-  path: z.string()
+const imageSpatialdataSchema = z.object({
+  path: z.string(),
+  coordinateSystem: z.string().optional().describe('The name of a coordinate transformation output used to transform the image. If not provided, the "global" coordinate system is assumed.')
 });
 const obsSegmentationsSpatialdataSchema = z.object({
-  // TODO: should this also extend the imageOmeZarrSchema?
   // TODO: should this be renamed labelsSpatialdataSchema?
   // TODO: support obsTypesFromChannelNames?
-  path: z.string()
+  path: z.string(),
+  tablePath: z.string().optional().describe("The path to a table which annotates the labels. If available but not specified, the spot identifiers may not be aligned with associated tabular data as expected."),
+  coordinateSystem: z.string().optional().describe('The name of a coordinate transformation output used to transform the image. If not provided, the "global" coordinate system is assumed.')
 });
 z.object({
-  path: z.string()
+  path: z.string(),
+  coordinateSystem: z.string().optional().describe('The name of a coordinate transformation output used to transform the coordinates. If not provided, the "global" coordinate system is assumed.')
 });
 const obsSpotsSpatialdataSchema = z.object({
   path: z.string(),
-  tablePath: z.string().optional().describe("The path to a table which annotates the spots. If available but not specified, the spot identifiers may not be aligned with associated tabular data as expected.")
+  tablePath: z.string().optional().describe("The path to a table which annotates the spots. If available but not specified, the spot identifiers may not be aligned with associated tabular data as expected."),
+  coordinateSystem: z.string().optional().describe('The name of a coordinate transformation output used to transform the coordinates and radii. If not provided, the "global" coordinate system is assumed.')
 });
 const obsFeatureMatrixSpatialdataSchema = annDataObsFeatureMatrix.extend({
-  region: z.string().describe("The name of a region to use to filter instances (i.e., rows) in the table").optional()
+  region: z.string().describe("The name of a region to use to filter instances (i.e., rows) in the table").optional(),
+  coordinateSystem: z.string().optional().describe('The name of a coordinate transformation output used to transform the image. If not provided, the "global" coordinate system is assumed.')
 });
 const obsSetsSpatialdataSchema = z.object({
   region: z.string().describe("The name of a region to use to filter instances (i.e., rows) in the table").optional(),
   tablePath: z.string().optional().describe("The path to a table which contains the index for the set values."),
-  obsSets: annDataObsSets
+  obsSets: annDataObsSetsArr
 });
 z.object({
   targetX: z.number(),
@@ -12129,15 +12138,21 @@ anndataZarrSchema.extend({
 z.object({
   // TODO: should `image` be a special schema
   // to allow specifying fileUid (like for embeddingType)?
+  // TODO: allow multiple images
   image: imageSpatialdataSchema,
   // TODO: should this be a special schema
   // to allow specifying fileUid (like for embeddingType)?
+  // TODO: allow multiple labels
   labels: obsSegmentationsSpatialdataSchema,
   obsFeatureMatrix: obsFeatureMatrixSpatialdataSchema,
   obsSpots: obsSpotsSpatialdataSchema,
   // TODO: obsPoints
   // TODO: obsLocations
-  obsSets: obsSetsSpatialdataSchema
+  obsSets: obsSetsSpatialdataSchema,
+  // TODO: obsEmbedding
+  // TODO: obsLabels
+  // TODO: featureLabels
+  coordinateSystem: z.string().optional().describe("The name of a coordinate transformation output used to transform all elements which lack a per-element coordinateSystem property.")
 }).partial();
 z.object({
   obsLabelsTypes: z.array(z.string()).optional(),
@@ -123810,16 +123825,16 @@ function addDecoder(cases, importFn) {
   }
   cases.forEach((c2) => registry$1.set(c2, importFn));
 }
-addDecoder([void 0, 1], () => import("./raw-0f8b8d67.js").then((m2) => m2.default));
-addDecoder(5, () => import("./lzw-ca6c4d78.js").then((m2) => m2.default));
+addDecoder([void 0, 1], () => import("./raw-a4debd6c.js").then((m2) => m2.default));
+addDecoder(5, () => import("./lzw-9f52473a.js").then((m2) => m2.default));
 addDecoder(6, () => {
   throw new Error("old style JPEG compression is not supported.");
 });
-addDecoder(7, () => import("./jpeg-53a949c9.js").then((m2) => m2.default));
-addDecoder([8, 32946], () => import("./deflate-d789a72d.js").then((m2) => m2.default));
-addDecoder(32773, () => import("./packbits-c55021ab.js").then((m2) => m2.default));
-addDecoder(34887, () => import("./lerc-40717afa.js").then((m2) => m2.default));
-addDecoder(50001, () => import("./webimage-b3e420b5.js").then((m2) => m2.default));
+addDecoder(7, () => import("./jpeg-d0bd0dbe.js").then((m2) => m2.default));
+addDecoder([8, 32946], () => import("./deflate-cf02d134.js").then((m2) => m2.default));
+addDecoder(32773, () => import("./packbits-88231270.js").then((m2) => m2.default));
+addDecoder(34887, () => import("./lerc-776d0184.js").then((m2) => m2.default));
+addDecoder(50001, () => import("./webimage-8270872a.js").then((m2) => m2.default));
 function decodeRowAcc(row, stride) {
   let length2 = row.length - stride;
   let offset5 = 0;

package/dist/index.js

@@ -1,4 +1,4 @@
-import { G } from "./index-c9b4cfce.js";
+import { G } from "./index-a7052125.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{jpeg-53a949c9.js → jpeg-d0bd0dbe.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-c9b4cfce.js";
+import { B as BaseDecoder } from "./index-a7052125.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{lerc-40717afa.js → lerc-776d0184.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
-import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-c9b4cfce.js";
+import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-a7052125.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{lzw-ca6c4d78.js → lzw-9f52473a.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-c9b4cfce.js";
+import { B as BaseDecoder } from "./index-a7052125.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{packbits-c55021ab.js → packbits-88231270.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-c9b4cfce.js";
+import { B as BaseDecoder } from "./index-a7052125.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{raw-0f8b8d67.js → raw-a4debd6c.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-c9b4cfce.js";
+import { B as BaseDecoder } from "./index-a7052125.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{webimage-b3e420b5.js → webimage-8270872a.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-c9b4cfce.js";
+import { B as BaseDecoder } from "./index-a7052125.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/scatterplot-gating",
-  "version": "3.4.11",
+  "version": "3.4.14",
   "author": "Gehlenborg Lab",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -20,11 +20,11 @@
     "d3-array": "^2.4.0",
     "lodash-es": "^4.17.21",
     "react-aria": "^3.28.0",
-    "@vitessce/constants-internal": "3.4.11",
-    "@vitessce/scatterplot": "3.4.11",
-    "@vitessce/sets-utils": "3.4.11",
-    "@vitessce/utils": "3.4.11",
-    "@vitessce/vit-s": "3.4.11"
+    "@vitessce/constants-internal": "3.4.14",
+    "@vitessce/scatterplot": "3.4.14",
+    "@vitessce/sets-utils": "3.4.14",
+    "@vitessce/utils": "3.4.14",
+    "@vitessce/vit-s": "3.4.14"
   },
   "devDependencies": {
     "react": "^18.0.0",