@vitessce/scatterplot-embedding 4.1.0 → 4.1.1

package/dist/{deflate-rRUHMvv4.js → deflate-C-lrlL8q.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { B as BaseDecoder } from "./index-BPLMRXHR.js";
+import { B as BaseDecoder } from "./index-DT4WpL6f.js";
 class DeflateDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return inflate_1(new Uint8Array(buffer)).buffer;

package/dist/{index-BPLMRXHR.js → index-DT4WpL6f.js}

@@ -9874,6 +9874,7 @@ const CoordinationType$1 = {
   PIXEL_HIGHLIGHT: "pixelHighlight",
   // Per-image-layer
   TOOLTIP_CROSSHAIRS_VISIBLE: "tooltipCrosshairsVisible",
+  TOOLTIP_OBS_SETS_MODE: "tooltipObsSetsMode",
   LEGEND_VISIBLE: "legendVisible",
   SPATIAL_CHANNEL_LABELS_VISIBLE: "spatialChannelLabelsVisible",
   SPATIAL_CHANNEL_LABELS_ORIENTATION: "spatialChannelLabelsOrientation",
@@ -10205,6 +10206,7 @@ const COMPONENT_COORDINATION_TYPES = {
     CoordinationType$1.SPATIAL_ORBIT_AXIS,
     CoordinationType$1.SPATIAL_ZOOM,
     CoordinationType$1.SPATIAL_CAMERA_SNAPSHOT,
+    CoordinationType$1.SPATIAL_RENDERING_MODE,
     CoordinationType$1.OBS_FILTER,
     CoordinationType$1.OBS_HIGHLIGHT,
     CoordinationType$1.OBS_SET_SELECTION,
@@ -10272,6 +10274,7 @@ const COMPONENT_COORDINATION_TYPES = {
     CoordinationType$1.OBS_COLOR_ENCODING,
     CoordinationType$1.ADDITIONAL_OBS_SETS,
     CoordinationType$1.TOOLTIPS_VISIBLE,
+    CoordinationType$1.TOOLTIP_OBS_SETS_MODE,
     CoordinationType$1.SAMPLE_TYPE,
     CoordinationType$1.SAMPLE_SET_SELECTION,
     CoordinationType$1.SAMPLE_SET_FILTER,
@@ -10323,6 +10326,7 @@ const COMPONENT_COORDINATION_TYPES = {
     CoordinationType$1.OBS_COLOR_ENCODING,
     CoordinationType$1.ADDITIONAL_OBS_SETS,
     CoordinationType$1.TOOLTIPS_VISIBLE,
+    CoordinationType$1.TOOLTIP_OBS_SETS_MODE,
     CoordinationType$1.SAMPLE_TYPE,
     CoordinationType$1.SAMPLE_SET_SELECTION,
     CoordinationType$1.SAMPLE_SET_FILTER,
@@ -10404,6 +10408,7 @@ const COMPONENT_COORDINATION_TYPES = {
     CoordinationType$1.ADDITIONAL_OBS_SETS,
     CoordinationType$1.MOLECULE_HIGHLIGHT,
     CoordinationType$1.TOOLTIPS_VISIBLE,
+    CoordinationType$1.TOOLTIP_OBS_SETS_MODE,
     CoordinationType$1.PHOTOMETRIC_INTERPRETATION,
     CoordinationType$1.ANNOTATION_STORY,
     CoordinationType$1.ANNOTATION_SHAPES,
@@ -10453,6 +10458,7 @@ const COMPONENT_COORDINATION_TYPES = {
     CoordinationType$1.ADDITIONAL_OBS_SETS,
     CoordinationType$1.MOLECULE_HIGHLIGHT,
     CoordinationType$1.TOOLTIPS_VISIBLE,
+    CoordinationType$1.TOOLTIP_OBS_SETS_MODE,
     CoordinationType$1.FILE_UID,
     CoordinationType$1.SPATIAL_TARGET_C,
     CoordinationType$1.SPATIAL_LAYER_VISIBLE,
@@ -10536,7 +10542,8 @@ const COMPONENT_COORDINATION_TYPES = {
     CoordinationType$1.FEATURE_VALUE_COLORMAP_RANGE,
     CoordinationType$1.OBS_COLOR_ENCODING,
     CoordinationType$1.ADDITIONAL_OBS_SETS,
-    CoordinationType$1.TOOLTIPS_VISIBLE
+    CoordinationType$1.TOOLTIPS_VISIBLE,
+    CoordinationType$1.TOOLTIP_OBS_SETS_MODE
   ],
   [ViewType$1.OBS_SETS]: [
     CoordinationType$1.DATASET,
@@ -116577,22 +116584,22 @@ function addDecoder(cases, importFn) {
   }
   cases.forEach((c2) => registry$1.set(c2, importFn));
 }
-addDecoder([void 0, 1], () => import("./raw-D55mTiBU.js").then((m2) => m2.default));
-addDecoder(5, () => import("./lzw-DFI2LUrc.js").then((m2) => m2.default));
+addDecoder([void 0, 1], () => import("./raw-D7eQMEmN.js").then((m2) => m2.default));
+addDecoder(5, () => import("./lzw-CTz-2vus.js").then((m2) => m2.default));
 addDecoder(6, () => {
   throw new Error("old style JPEG compression is not supported.");
 });
-addDecoder(7, () => import("./jpeg-BozBiXDf.js").then((m2) => m2.default));
-addDecoder([8, 32946], () => import("./deflate-rRUHMvv4.js").then((m2) => m2.default));
-addDecoder(32773, () => import("./packbits-CHsbj-XL.js").then((m2) => m2.default));
+addDecoder(7, () => import("./jpeg-BhxJy6Ji.js").then((m2) => m2.default));
+addDecoder([8, 32946], () => import("./deflate-C-lrlL8q.js").then((m2) => m2.default));
+addDecoder(32773, () => import("./packbits-Da4S_mTv.js").then((m2) => m2.default));
 addDecoder(
   34887,
-  () => import("./lerc-DcLEOuuO.js").then(async (m2) => {
+  () => import("./lerc-BTOEb3Od.js").then(async (m2) => {
     await m2.zstd.init();
     return m2;
   }).then((m2) => m2.default)
 );
-addDecoder(50001, () => import("./webimage-mVfjCoPU.js").then((m2) => m2.default));
+addDecoder(50001, () => import("./webimage-DPam-3kr.js").then((m2) => m2.default));
 function decodeRowAcc(row, stride) {
   let length2 = row.length - stride;
   let offset2 = 0;
@@ -150209,6 +150216,7 @@ class AbstractSpatialOrScatterplot extends PureComponent {
     };
     this.lastApplied = null;
     this.transitionEndViewState = null;
+    this.finishedTransitionEndViewState = null;
     this.viewport = null;
     this.threeCamera = null;
     this.orbitControls = null;
@@ -150285,6 +150293,7 @@ class AbstractSpatialOrScatterplot extends PureComponent {
    * Called by DeckGL when a viewState transition ends.
    */
   onTransitionEnd() {
+    this.finishedTransitionEndViewState = this.transitionEndViewState;
     this.transitionEndViewState = null;
     this.setState({ transitionViewState: null });
   }
@@ -150295,6 +150304,7 @@ class AbstractSpatialOrScatterplot extends PureComponent {
    * Instead, the stale transitionViewState is ignored by getDeckViewState.
    */
   onTransitionInterrupt() {
+    this.finishedTransitionEndViewState = this.transitionEndViewState;
     this.transitionEndViewState = null;
   }
   /**
@@ -150307,6 +150317,13 @@ class AbstractSpatialOrScatterplot extends PureComponent {
     if (transitionViewState && transitionViewState.endViewState === this.transitionEndViewState && isSameZoomAndTarget(viewState, this.transitionEndViewState)) {
       return transitionViewState.viewState;
     }
+    if (!isSameZoomAndTarget(viewState, this.finishedTransitionEndViewState)) {
+      this.finishedTransitionEndViewState = null;
+    }
+    if (this.finishedTransitionEndViewState) {
+      const { transitionDuration, transitionInterpolator, ...viewStateWithoutTransition } = viewState;
+      return viewStateWithoutTransition;
+    }
     if (viewState.transitionDuration) {
       return {
         ...viewState,
@@ -150463,7 +150480,8 @@ class AbstractSpatialOrScatterplot extends PureComponent {
     const canvas = deckRef?.current?.deck?.canvas;
     if (!canvas || !spatialCameraSnapshot)
       return;
-    const camera = new PerspectiveCamera(spatialCameraSnapshot.fovDegrees, 1, 0.1, 1e5);
+    const { fovDegrees, projectionScale } = spatialCameraSnapshot;
+    const camera = new PerspectiveCamera(fovDegrees, 1, Math.max(projectionScale * 1e-4, 1e-3), Math.max(projectionScale * 100, 1e5));
     camera.updateProjectionMatrix();
     const eventTarget = canvas.parentElement ?? canvas;
     const controls = new OrbitControls(camera, eventTarget);
@@ -150618,8 +150636,8 @@ class AbstractSpatialOrScatterplot extends PureComponent {
         viewState: {
           viewMatrix: rawViewMatrix,
           fovy: fovDegrees,
-          near: 0.1,
-          far: 1e5
+          near: Math.max(projectionScale * 1e-4, 1e-3),
+          far: Math.max(projectionScale * 100, 1e5)
         }
       });
     } else if (use3d) {
@@ -154070,7 +154088,10 @@ makeStyles()(() => ({
     bottom: "0px",
     left: "0px",
     paddingLeft: "10px",
-    paddingBottom: "10px"
+    paddingBottom: "10px",
+    // Keep long channel names within the view so they can be truncated.
+    maxWidth: "90%",
+    boxSizing: "border-box"
   },
   channelNamesLegendLayer: {
     display: "flex"
@@ -154090,6 +154111,7 @@ const DEFAULT_FEATURE_AGGREGATION_STRATEGY = "first";
 function EmbeddingScatterplotSubscriber(props) {
   const {
     uuid,
+    viewUid: viewUidFromProps,
     closeButtonVisible,
     downloadButtonVisible,
     removeGridComponent,
@@ -154106,16 +154128,17 @@ function EmbeddingScatterplotSubscriber(props) {
     // Passed down from the ancestor <Vitessce/> or <VitS/> component.
     areAnnotationsEditable
   } = props;
+  const viewUid = viewUidFromProps ?? uuid;
   const loaders = useLoaders();
   const [
     // eslint-disable-next-line no-unused-vars
     coordinationScopes,
     _coordinationScopesBy,
     coordinationValues
-  ] = useViewMapping(uuid);
+  ] = useViewMapping(viewUid);
   const setComponentHover = useSetComponentHover();
   const setComponentViewInfo = useSetComponentViewInfo(uuid);
-  useAnnotationFrameCoordination(uuid, coordinationScopes, coordinationValues);
+  useAnnotationFrameCoordination(viewUid, coordinationScopes, coordinationValues);
   const [{
     dataset,
     obsType,
@@ -154144,6 +154167,7 @@ function EmbeddingScatterplotSubscriber(props) {
     featureValueColormap: geneExpressionColormap,
     featureValueColormapRange: geneExpressionColormapRange,
     tooltipsVisible,
+    tooltipObsSetsMode,
     sampleSetSelection: sampleSetSelectionFromCoordination,
     sampleSetColor,
     embeddingPointsVisible,
@@ -154192,10 +154216,10 @@ function EmbeddingScatterplotSubscriber(props) {
     COMPONENT_COORDINATION_TYPES[ViewType$1.SCATTERPLOT],
     coordinationScopes,
     coordinationValues,
-    uuid
+    viewUid
   );
   const annotationEditingProps = useAnnotationEditingForView(
-    uuid,
+    viewUid,
     Boolean(areAnnotationsEditable && annotationEditable && typeof annotationFrameIndex === "number")
   );
   const {
@@ -154507,7 +154531,9 @@ function EmbeddingScatterplotSubscriber(props) {
     observationsLabel,
     obsLabelsTypes,
     obsLabelsData,
-    obsSetsMembership
+    obsSetsMembership,
+    cellSetSelection,
+    tooltipObsSetsMode
   );
   const allCellsSelected = !(deferredCellSetSelection && mergedCellSets);
   const getCellIsSelected = useCallback((object2, { index: index2 }) => allCellsSelected || obsColorIndices.colorIndices[index2] !== 0 ? 1 : 0, [allCellsSelected, obsColorIndices]);
@@ -154625,7 +154651,7 @@ function EmbeddingScatterplotSubscriber(props) {
   const annotationFrameCoordinationValues = getAnnotationFrameCoordinationValues(
     annotationStory,
     annotationFrameIndex,
-    uuid
+    viewUid
   );
   const annotationTransitionProps = useAnnotationFrameTransition(
     { zoom, targetX, targetY },
@@ -154808,6 +154834,7 @@ function DualEmbeddingScatterplotSubscriber(props) {
     {
       ...props,
       uuid: `${uuid}-case`,
+      viewUid: uuid,
       title: isCaseCtrl ? `Scatterplot (${embeddingType}), ${caseSampleSetSelection?.[0]?.at(-1)}` : null,
       sampleSetSelection: caseSampleSetSelection
     }
@@ -154816,6 +154843,7 @@ function DualEmbeddingScatterplotSubscriber(props) {
     {
       ...props,
       uuid: `${uuid}-ctrl`,
+      viewUid: uuid,
       title: `Scatterplot (${embeddingType}), ${ctrlSampleSetSelection?.[0]?.at(-1)}`,
       sampleSetSelection: ctrlSampleSetSelection
     }

package/dist/index.js

@@ -1,4 +1,4 @@
-import { D, E } from "./index-BPLMRXHR.js";
+import { D, E } from "./index-DT4WpL6f.js";
 export {
   D as DualEmbeddingScatterplotSubscriber,
   E as EmbeddingScatterplotSubscriber

package/dist/{jpeg-BozBiXDf.js → jpeg-BhxJy6Ji.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-BPLMRXHR.js";
+import { B as BaseDecoder } from "./index-DT4WpL6f.js";
 const dctZigZag = new Int32Array([
   0,
   1,

package/dist/{lerc-DcLEOuuO.js → lerc-BTOEb3Od.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-BPLMRXHR.js";
+import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-DT4WpL6f.js";
 const LercParameters = {
   AddCompression: 1
 };

package/dist/{lzw-DFI2LUrc.js → lzw-CTz-2vus.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-BPLMRXHR.js";
+import { B as BaseDecoder } from "./index-DT4WpL6f.js";
 const MIN_BITS = 9;
 const CLEAR_CODE = 256;
 const EOI_CODE = 257;

package/dist/{packbits-CHsbj-XL.js → packbits-Da4S_mTv.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-BPLMRXHR.js";
+import { B as BaseDecoder } from "./index-DT4WpL6f.js";
 class PackbitsDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     const dataView = new DataView(buffer);

package/dist/{raw-D55mTiBU.js → raw-D7eQMEmN.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-BPLMRXHR.js";
+import { B as BaseDecoder } from "./index-DT4WpL6f.js";
 class RawDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return buffer;

package/dist/{webimage-mVfjCoPU.js → webimage-DPam-3kr.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-BPLMRXHR.js";
+import { B as BaseDecoder } from "./index-DT4WpL6f.js";
 class WebImageDecoder extends BaseDecoder {
   constructor() {
     super();

package/dist-tsc/DualEmbeddingScatterplotSubscriber.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"DualEmbeddingScatterplotSubscriber.d.ts","sourceRoot":"","sources":["../src/DualEmbeddingScatterplotSubscriber.js"],"names":[],"mappings":"AASA;;;;;;;;;;;;;;;GAeG;AACH,0DAVG;IAAsB,IAAI,EAAlB,MAAM;IACQ,KAAK,EAAnB,MAAM;IACQ,kBAAkB,EAAhC,MAAM;IAEU,mBAAmB;IAErB,KAAK,EAAnB,MAAM;IACQ,kBAAkB,EAAhC,MAAM;CAEhB,OAqDA"}
+{"version":3,"file":"DualEmbeddingScatterplotSubscriber.d.ts","sourceRoot":"","sources":["../src/DualEmbeddingScatterplotSubscriber.js"],"names":[],"mappings":"AASA;;;;;;;;;;;;;;;GAeG;AACH,0DAVG;IAAsB,IAAI,EAAlB,MAAM;IACQ,KAAK,EAAnB,MAAM;IACQ,kBAAkB,EAAhC,MAAM;IAEU,mBAAmB;IAErB,KAAK,EAAnB,MAAM;IACQ,kBAAkB,EAAhC,MAAM;CAEhB,OAuDA"}

package/dist-tsc/DualEmbeddingScatterplotSubscriber.js

@@ -31,8 +31,8 @@ export function DualEmbeddingScatterplotSubscriber(props) {
     const ctrlSampleSetSelection = useMemo(() => (sampleSetSelection?.[1]
         ? [sampleSetSelection[1]]
         : null), [sampleSetSelection]);
-    return (_jsxs("div", { style: { width: '100%', height: '100%', display: 'flex', flexDirection: 'row' }, children: [_jsx("div", { style: { width: isCaseCtrl ? '50%' : '100%', display: 'flex', flexDirection: 'column' }, children: _jsx(EmbeddingScatterplotSubscriber, { ...props, uuid: `${uuid}-case`, title: (isCaseCtrl
+    return (_jsxs("div", { style: { width: '100%', height: '100%', display: 'flex', flexDirection: 'row' }, children: [_jsx("div", { style: { width: isCaseCtrl ? '50%' : '100%', display: 'flex', flexDirection: 'column' }, children: _jsx(EmbeddingScatterplotSubscriber, { ...props, uuid: `${uuid}-case`, viewUid: uuid, title: (isCaseCtrl
                         ? `Scatterplot (${embeddingType}), ${caseSampleSetSelection?.[0]?.at(-1)}`
-                        : null), sampleSetSelection: caseSampleSetSelection }) }), isCaseCtrl ? (_jsx("div", { style: { width: '50%', display: 'flex', flexDirection: 'column' }, children: _jsx(EmbeddingScatterplotSubscriber, { ...props, uuid: `${uuid}-ctrl`, title: `Scatterplot (${embeddingType}), ${ctrlSampleSetSelection?.[0]?.at(-1)}`, sampleSetSelection: ctrlSampleSetSelection }) })) : null] }));
+                        : null), sampleSetSelection: caseSampleSetSelection }) }), isCaseCtrl ? (_jsx("div", { style: { width: '50%', display: 'flex', flexDirection: 'column' }, children: _jsx(EmbeddingScatterplotSubscriber, { ...props, uuid: `${uuid}-ctrl`, viewUid: uuid, title: `Scatterplot (${embeddingType}), ${ctrlSampleSetSelection?.[0]?.at(-1)}`, sampleSetSelection: ctrlSampleSetSelection }) })) : null] }));
 }
 //# sourceMappingURL=DualEmbeddingScatterplotSubscriber.js.map

package/dist-tsc/DualEmbeddingScatterplotSubscriber.js.map

@@ -1 +1 @@
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package/dist-tsc/EmbeddingScatterplotSubscriber.d.ts

@@ -1,8 +1,11 @@
 /**
  * A subscriber component for the scatterplot.
  * @param {object} props
- * @param {number} props.uuid The unique identifier for this component, also used as its
- * view uid for looking up its coordination mapping via `useViewMapping`.
+ * @param {number} props.uuid The unique identifier for this component.
+ * @param {string} props.viewUid The uid of the corresponding view in the view config layout,
+ * used for looking up its coordination mapping via `useViewMapping`.
+ * Optional, defaults to `uuid`. Differs from `uuid` when rendered by a parent
+ * (e.g., the dual scatterplot) that renders multiple child scatterplots for one view.
  * @param {string} props.theme The current theme name.
  * @param {function} props.removeGridComponent The callback function to pass to TitleInfo,
  * to call when the component has been removed from the grid.
@@ -12,6 +15,7 @@
  */
 export function EmbeddingScatterplotSubscriber(props: {
     uuid: number;
+    viewUid: string;
     theme: string;
     removeGridComponent: Function;
     title: string;

package/dist-tsc/EmbeddingScatterplotSubscriber.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"EmbeddingScatterplotSubscriber.d.ts","sourceRoot":"","sources":["../src/EmbeddingScatterplotSubscriber.js"],"names":[],"mappings":"AAqDA;;;;;;;;;;;;;;GAcG;AACH,sDAZG;IAAsB,IAAI,EAAlB,MAAM;IACQ,OAAO,EAArB,MAAM;IAIQ,KAAK,EAAnB,MAAM;IACU,mBAAmB;IAErB,KAAK,EAAnB,MAAM;IACQ,kBAAkB,EAAhC,MAAM;CAEhB,OAqtBA"}

package/dist-tsc/EmbeddingScatterplotSubscriber.js

@@ -14,8 +14,11 @@ const DEFAULT_FEATURE_AGGREGATION_STRATEGY = 'first';
 /**
  * A subscriber component for the scatterplot.
  * @param {object} props
- * @param {number} props.uuid The unique identifier for this component, also used as its
- * view uid for looking up its coordination mapping via `useViewMapping`.
+ * @param {number} props.uuid The unique identifier for this component.
+ * @param {string} props.viewUid The uid of the corresponding view in the view config layout,
+ * used for looking up its coordination mapping via `useViewMapping`.
+ * Optional, defaults to `uuid`. Differs from `uuid` when rendered by a parent
+ * (e.g., the dual scatterplot) that renders multiple child scatterplots for one view.
  * @param {string} props.theme The current theme name.
  * @param {function} props.removeGridComponent The callback function to pass to TitleInfo,
  * to call when the component has been removed from the grid.
@@ -24,7 +27,7 @@ const DEFAULT_FEATURE_AGGREGATION_STRATEGY = 'first';
  * when using dynamic opacity mode.
  */
 export function EmbeddingScatterplotSubscriber(props) {
-    const { uuid, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, observationsLabelOverride, title: titleOverride, helpText = ViewHelpMapping.SCATTERPLOT, 
+    const { uuid, viewUid: viewUidFromProps, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, observationsLabelOverride, title: titleOverride, helpText = ViewHelpMapping.SCATTERPLOT, 
     // Average fill density for dynamic opacity calculation.
     averageFillDensity, 
     // For the dual scatterplot:
@@ -33,6 +36,7 @@ export function EmbeddingScatterplotSubscriber(props) {
     circleScaleFactor = 0.8, 
     // Passed down from the ancestor <Vitessce/> or <VitS/> component.
     areAnnotationsEditable, } = props;
+    const viewUid = viewUidFromProps ?? uuid;
     const loaders = useLoaders();
     // useViewMapping looks up this view's coordination mapping directly from the
     // view config (by uuid), after accounting for meta-coordination, so there is
@@ -41,18 +45,18 @@ export function EmbeddingScatterplotSubscriber(props) {
     // precedence over values obtained via coordinationScopes.
     const [
     // eslint-disable-next-line no-unused-vars
-    coordinationScopes, _coordinationScopesBy, coordinationValues,] = useViewMapping(uuid);
+    coordinationScopes, _coordinationScopesBy, coordinationValues,] = useViewMapping(viewUid);
     const setComponentHover = useSetComponentHover();
     const setComponentViewInfo = useSetComponentViewInfo(uuid);
     // Merge the coordination values that the current annotation frame defines for this view
     // into the coordination space, whenever the frame changes. The story itself is read-only.
     // TODO: handle the rendering of alternative views/layouts (in vit-s?)
-    useAnnotationFrameCoordination(uuid, coordinationScopes, coordinationValues);
+    useAnnotationFrameCoordination(viewUid, coordinationScopes, coordinationValues);
     // Get "props" from the coordination space.
-    const [{ dataset, obsType, featureType, featureValueType, sampleType, embeddingZoom: zoom, embeddingTargetX: targetX, embeddingTargetY: targetY, embeddingTargetZ: targetZ, embeddingType: mapping, obsFilter: cellFilter, obsHighlight: cellHighlight, featureSelection: geneSelection, obsSetSelection: cellSetSelection, obsSetColor: cellSetColor, obsColorEncoding: cellColorEncoding, additionalObsSets: additionalCellSets, embeddingObsSetPolygonsVisible: cellSetPolygonsVisible, embeddingObsSetLabelsVisible: cellSetLabelsVisible, embeddingObsSetLabelSize: cellSetLabelSize, embeddingObsRadius: cellRadiusFixed, embeddingObsRadiusMode: cellRadiusMode, embeddingObsOpacity: cellOpacityFixed, embeddingObsOpacityMode: cellOpacityMode, featureValueColormap: geneExpressionColormap, featureValueColormapRange: geneExpressionColormapRange, tooltipsVisible, sampleSetSelection: sampleSetSelectionFromCoordination, sampleSetColor, embeddingPointsVisible, embeddingContoursVisible, embeddingContoursFilled, embeddingContourPercentiles: contourPercentiles, contourColorEncoding, contourColor, featureAggregationStrategy, annotationStory, annotationShapes, annotationOverlayVisible, annotationSemanticZoom, annotationTransitionDuration, annotationEditable, annotationFrameIndex, }, { setEmbeddingZoom: setZoom, setEmbeddingTargetX: setTargetX, setEmbeddingTargetY: setTargetY, setEmbeddingTargetZ: setTargetZ, setObsFilter: setCellFilter, setObsSetSelection: setCellSetSelection, setObsHighlight: setCellHighlight, setObsSetColor: setCellSetColor, setObsColorEncoding: setCellColorEncoding, setAdditionalObsSets: setAdditionalCellSets, setEmbeddingObsSetPolygonsVisible: setCellSetPolygonsVisible, setEmbeddingObsSetLabelsVisible: setCellSetLabelsVisible, setEmbeddingObsSetLabelSize: setCellSetLabelSize, setEmbeddingObsRadius: setCellRadiusFixed, setEmbeddingObsRadiusMode: setCellRadiusMode, setEmbeddingObsOpacity: setCellOpacityFixed, setEmbeddingObsOpacityMode: setCellOpacityMode, setFeatureValueColormap: setGeneExpressionColormap, setFeatureValueColormapRange: setGeneExpressionColormapRange, setTooltipsVisible, setEmbeddingPointsVisible, setEmbeddingContoursVisible, setEmbeddingContoursFilled, setEmbeddingContourPercentiles: setContourPercentiles, setContourColorEncoding, setFeatureAggregationStrategy, setAnnotationStory, }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType.SCATTERPLOT], coordinationScopes, coordinationValues, uuid);
+    const [{ dataset, obsType, featureType, featureValueType, sampleType, embeddingZoom: zoom, embeddingTargetX: targetX, embeddingTargetY: targetY, embeddingTargetZ: targetZ, embeddingType: mapping, obsFilter: cellFilter, obsHighlight: cellHighlight, featureSelection: geneSelection, obsSetSelection: cellSetSelection, obsSetColor: cellSetColor, obsColorEncoding: cellColorEncoding, additionalObsSets: additionalCellSets, embeddingObsSetPolygonsVisible: cellSetPolygonsVisible, embeddingObsSetLabelsVisible: cellSetLabelsVisible, embeddingObsSetLabelSize: cellSetLabelSize, embeddingObsRadius: cellRadiusFixed, embeddingObsRadiusMode: cellRadiusMode, embeddingObsOpacity: cellOpacityFixed, embeddingObsOpacityMode: cellOpacityMode, featureValueColormap: geneExpressionColormap, featureValueColormapRange: geneExpressionColormapRange, tooltipsVisible, tooltipObsSetsMode, sampleSetSelection: sampleSetSelectionFromCoordination, sampleSetColor, embeddingPointsVisible, embeddingContoursVisible, embeddingContoursFilled, embeddingContourPercentiles: contourPercentiles, contourColorEncoding, contourColor, featureAggregationStrategy, annotationStory, annotationShapes, annotationOverlayVisible, annotationSemanticZoom, annotationTransitionDuration, annotationEditable, annotationFrameIndex, }, { setEmbeddingZoom: setZoom, setEmbeddingTargetX: setTargetX, setEmbeddingTargetY: setTargetY, setEmbeddingTargetZ: setTargetZ, setObsFilter: setCellFilter, setObsSetSelection: setCellSetSelection, setObsHighlight: setCellHighlight, setObsSetColor: setCellSetColor, setObsColorEncoding: setCellColorEncoding, setAdditionalObsSets: setAdditionalCellSets, setEmbeddingObsSetPolygonsVisible: setCellSetPolygonsVisible, setEmbeddingObsSetLabelsVisible: setCellSetLabelsVisible, setEmbeddingObsSetLabelSize: setCellSetLabelSize, setEmbeddingObsRadius: setCellRadiusFixed, setEmbeddingObsRadiusMode: setCellRadiusMode, setEmbeddingObsOpacity: setCellOpacityFixed, setEmbeddingObsOpacityMode: setCellOpacityMode, setFeatureValueColormap: setGeneExpressionColormap, setFeatureValueColormapRange: setGeneExpressionColormapRange, setTooltipsVisible, setEmbeddingPointsVisible, setEmbeddingContoursVisible, setEmbeddingContoursFilled, setEmbeddingContourPercentiles: setContourPercentiles, setContourColorEncoding, setFeatureAggregationStrategy, setAnnotationStory, }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType.SCATTERPLOT], coordinationScopes, coordinationValues, viewUid);
     // Props for drawing annotation shapes in this view (while authoring the story
     // via the annotation controller), and for highlighting the selected shape.
-    const annotationEditingProps = useAnnotationEditingForView(uuid, Boolean(areAnnotationsEditable && annotationEditable && typeof annotationFrameIndex === 'number'));
+    const annotationEditingProps = useAnnotationEditingForView(viewUid, Boolean(areAnnotationsEditable && annotationEditable && typeof annotationFrameIndex === 'number'));
     const { embeddingZoom: initialZoom, embeddingTargetX: initialTargetX, embeddingTargetY: initialTargetY, } = useInitialCoordination(COMPONENT_COORDINATION_TYPES[ViewType.SCATTERPLOT], coordinationScopes, coordinationValues);
     const observationsLabel = observationsLabelOverride || obsType;
     const sampleSetSelection = (sampleSetSelectionFromProps
@@ -224,7 +228,7 @@ export function EmbeddingScatterplotSubscriber(props) {
         // eslint-disable-next-line react-hooks/exhaustive-deps
     }, [xRange, yRange, xExtent, yExtent, numCells,
         width, height, initialZoom, zoom, initialTargetX, initialTargetY, averageFillDensity]);
-    const getObsInfo = useGetObsInfo(observationsLabel, obsLabelsTypes, obsLabelsData, obsSetsMembership);
+    const getObsInfo = useGetObsInfo(observationsLabel, obsLabelsTypes, obsLabelsData, obsSetsMembership, cellSetSelection, tooltipObsSetsMode);
     // With no set selection every observation counts as selected, matching the
     // behavior of the ID-keyed color map this replaced. Uses the deferred selection
     // so that it stays consistent with obsColorIndices within each commit.
@@ -355,7 +359,7 @@ export function EmbeddingScatterplotSubscriber(props) {
         obsSetsColumns,
     ]);
     // Animate the 2D zoom/target when they change due to the current annotation frame.
-    const annotationFrameCoordinationValues = getAnnotationFrameCoordinationValues(annotationStory, annotationFrameIndex, uuid);
+    const annotationFrameCoordinationValues = getAnnotationFrameCoordinationValues(annotationStory, annotationFrameIndex, viewUid);
     const annotationTransitionProps = useAnnotationFrameTransition({ zoom, targetX, targetY }, {
         zoom: annotationFrameCoordinationValues?.[CoordinationType.EMBEDDING_ZOOM],
         targetX: annotationFrameCoordinationValues?.[CoordinationType.EMBEDDING_TARGET_X],

package/dist-tsc/EmbeddingScatterplotSubscriber.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/scatterplot-embedding",
-  "version": "4.1.0",
+  "version": "4.1.1",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -20,13 +20,13 @@
     "lodash-es": "^4.17.21",
     "react-aria": "^3.47.0",
     "@turf/circle": "^7.2.0",
-    "@vitessce/styles": "4.1.0",
-    "@vitessce/scatterplot": "4.1.0",
-    "@vitessce/legend": "4.1.0",
-    "@vitessce/constants-internal": "4.1.0",
-    "@vitessce/sets-utils": "4.1.0",
-    "@vitessce/vit-s": "4.1.0",
-    "@vitessce/utils": "4.1.0"
+    "@vitessce/styles": "4.1.1",
+    "@vitessce/constants-internal": "4.1.1",
+    "@vitessce/legend": "4.1.1",
+    "@vitessce/scatterplot": "4.1.1",
+    "@vitessce/vit-s": "4.1.1",
+    "@vitessce/utils": "4.1.1",
+    "@vitessce/sets-utils": "4.1.1"
   },
   "devDependencies": {
     "react": "19.2.6",

package/src/DualEmbeddingScatterplotSubscriber.js

@@ -56,6 +56,7 @@ export function DualEmbeddingScatterplotSubscriber(props) {
         <EmbeddingScatterplotSubscriber
           {...props}
           uuid={`${uuid}-case`}
+          viewUid={uuid}
           title={(isCaseCtrl
             ? `Scatterplot (${embeddingType}), ${caseSampleSetSelection?.[0]?.at(-1)}`
             : null
@@ -68,6 +69,7 @@ export function DualEmbeddingScatterplotSubscriber(props) {
           <EmbeddingScatterplotSubscriber
             {...props}
             uuid={`${uuid}-ctrl`}
+            viewUid={uuid}
             title={`Scatterplot (${embeddingType}), ${ctrlSampleSetSelection?.[0]?.at(-1)}`}
             sampleSetSelection={ctrlSampleSetSelection}
           />

package/src/EmbeddingScatterplotSubscriber.js

@@ -54,8 +54,11 @@ const DEFAULT_FEATURE_AGGREGATION_STRATEGY = 'first';
 /**
  * A subscriber component for the scatterplot.
  * @param {object} props
- * @param {number} props.uuid The unique identifier for this component, also used as its
- * view uid for looking up its coordination mapping via `useViewMapping`.
+ * @param {number} props.uuid The unique identifier for this component.
+ * @param {string} props.viewUid The uid of the corresponding view in the view config layout,
+ * used for looking up its coordination mapping via `useViewMapping`.
+ * Optional, defaults to `uuid`. Differs from `uuid` when rendered by a parent
+ * (e.g., the dual scatterplot) that renders multiple child scatterplots for one view.
  * @param {string} props.theme The current theme name.
  * @param {function} props.removeGridComponent The callback function to pass to TitleInfo,
  * to call when the component has been removed from the grid.
@@ -66,6 +69,7 @@ const DEFAULT_FEATURE_AGGREGATION_STRATEGY = 'first';
 export function EmbeddingScatterplotSubscriber(props) {
   const {
     uuid,
+    viewUid: viewUidFromProps,
     closeButtonVisible,
     downloadButtonVisible,
     removeGridComponent,
@@ -83,6 +87,7 @@ export function EmbeddingScatterplotSubscriber(props) {
     areAnnotationsEditable,
   } = props;
 
+  const viewUid = viewUidFromProps ?? uuid;
   const loaders = useLoaders();
   // useViewMapping looks up this view's coordination mapping directly from the
   // view config (by uuid), after accounting for meta-coordination, so there is
@@ -92,14 +97,14 @@ export function EmbeddingScatterplotSubscriber(props) {
   const [
     // eslint-disable-next-line no-unused-vars
     coordinationScopes, _coordinationScopesBy, coordinationValues,
-  ] = useViewMapping(uuid);
+  ] = useViewMapping(viewUid);
   const setComponentHover = useSetComponentHover();
   const setComponentViewInfo = useSetComponentViewInfo(uuid);
 
   // Merge the coordination values that the current annotation frame defines for this view
   // into the coordination space, whenever the frame changes. The story itself is read-only.
   // TODO: handle the rendering of alternative views/layouts (in vit-s?)
-  useAnnotationFrameCoordination(uuid, coordinationScopes, coordinationValues);
+  useAnnotationFrameCoordination(viewUid, coordinationScopes, coordinationValues);
 
   // Get "props" from the coordination space.
   const [{
@@ -130,6 +135,7 @@ export function EmbeddingScatterplotSubscriber(props) {
     featureValueColormap: geneExpressionColormap,
     featureValueColormapRange: geneExpressionColormapRange,
     tooltipsVisible,
+    tooltipObsSetsMode,
     sampleSetSelection: sampleSetSelectionFromCoordination,
     sampleSetColor,
     embeddingPointsVisible,
@@ -176,13 +182,13 @@ export function EmbeddingScatterplotSubscriber(props) {
     setAnnotationStory,
   }] = useCoordination(
     COMPONENT_COORDINATION_TYPES[ViewType.SCATTERPLOT], coordinationScopes,
-    coordinationValues, uuid,
+    coordinationValues, viewUid,
   );
 
   // Props for drawing annotation shapes in this view (while authoring the story
   // via the annotation controller), and for highlighting the selected shape.
   const annotationEditingProps = useAnnotationEditingForView(
-    uuid,
+    viewUid,
     Boolean(areAnnotationsEditable && annotationEditable && typeof annotationFrameIndex === 'number'),
   );
 
@@ -459,6 +465,7 @@ export function EmbeddingScatterplotSubscriber(props) {
 
   const getObsInfo = useGetObsInfo(
     observationsLabel, obsLabelsTypes, obsLabelsData, obsSetsMembership,
+    cellSetSelection, tooltipObsSetsMode,
   );
 
   // With no set selection every observation counts as selected, matching the
@@ -613,7 +620,7 @@ export function EmbeddingScatterplotSubscriber(props) {
 
   // Animate the 2D zoom/target when they change due to the current annotation frame.
   const annotationFrameCoordinationValues = getAnnotationFrameCoordinationValues(
-    annotationStory, annotationFrameIndex, uuid,
+    annotationStory, annotationFrameIndex, viewUid,
   );
   const annotationTransitionProps = useAnnotationFrameTransition(
     { zoom, targetX, targetY },