npm - @vitessce/scatterplot-embedding - Versions diffs - 4.0.4 → 4.0.5 - Mend

@vitessce/scatterplot-embedding 4.0.4 → 4.0.5

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Files changed (14) hide show

package/dist/index.js CHANGED Viewed

@@ -1,4 +1,4 @@
-import { D, E } from "./index-5HRu2Z3O.js";
+import { D, E } from "./index-QPcBcBv4.js";
 export {
   D as DualEmbeddingScatterplotSubscriber,
   E as EmbeddingScatterplotSubscriber

package/dist/{jpeg-BDB9TI7a.js → jpeg-0GPV7wHB.js} RENAMED Viewed

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-5HRu2Z3O.js";
+import { B as BaseDecoder } from "./index-QPcBcBv4.js";
 const dctZigZag = new Int32Array([
   0,
   1,

package/dist/{lerc-CDQiFN0R.js → lerc-b0eKtxKR.js} RENAMED Viewed

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-5HRu2Z3O.js";
+import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-QPcBcBv4.js";
 const LercParameters = {
   AddCompression: 1
 };

package/dist/{lzw-D7BZ1wcC.js → lzw-BdtUMX-Z.js} RENAMED Viewed

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-5HRu2Z3O.js";
+import { B as BaseDecoder } from "./index-QPcBcBv4.js";
 const MIN_BITS = 9;
 const CLEAR_CODE = 256;
 const EOI_CODE = 257;

package/dist/{packbits-CE3TkByu.js → packbits-XKIpoMsP.js} RENAMED Viewed

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-5HRu2Z3O.js";
+import { B as BaseDecoder } from "./index-QPcBcBv4.js";
 class PackbitsDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     const dataView = new DataView(buffer);

package/dist/{raw-Dafa0Swn.js → raw-gRNpvpQg.js} RENAMED Viewed

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-5HRu2Z3O.js";
+import { B as BaseDecoder } from "./index-QPcBcBv4.js";
 class RawDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return buffer;

package/dist/{webimage-B4Leod1Q.js → webimage-CbAzpg9y.js} RENAMED Viewed

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-5HRu2Z3O.js";
+import { B as BaseDecoder } from "./index-QPcBcBv4.js";
 class WebImageDecoder extends BaseDecoder {
   constructor() {
     super();

package/dist-tsc/EmbeddingScatterplotSubscriber.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"EmbeddingScatterplotSubscriber.d.ts","sourceRoot":"","sources":["../src/EmbeddingScatterplotSubscriber.js"],"names":[],"mappings":"AA6CA;;;;;;;;;;;;GAYG;AACH,sDAVG;IAAsB,IAAI,EAAlB,MAAM;IACQ,KAAK,EAAnB,MAAM;IACQ,kBAAkB,EAAhC,MAAM;IAEU,mBAAmB;IAErB,KAAK,EAAnB,MAAM;IACQ,kBAAkB,EAAhC,MAAM;CAEhB,~~OA6mBA~~"}
1	+ {"version":3,"file":"EmbeddingScatterplotSubscriber.d.ts","sourceRoot":"","sources":["../src/EmbeddingScatterplotSubscriber.js"],"names":[],"mappings":"AA6CA;;;;;;;;;;;;GAYG;AACH,sDAVG;IAAsB,IAAI,EAAlB,MAAM;IACQ,KAAK,EAAnB,MAAM;IACQ,kBAAkB,EAAhC,MAAM;IAEU,mBAAmB;IAErB,KAAK,EAAnB,MAAM;IACQ,kBAAkB,EAAhC,MAAM;CAEhB,OAooBA"}

package/dist-tsc/EmbeddingScatterplotSubscriber.js CHANGED Viewed

@@ -1,10 +1,10 @@
 import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
-import React, { useState, useEffect, useCallback, useMemo, } from 'react';
+import React, { useState, useEffect, useCallback, useMemo, useDeferredValue, } from 'react';
 import { extent, quantileSorted } from 'd3-array';
 import { isEqual } from 'lodash-es';
 import { circle } from '@turf/circle';
 import { TitleInfo, useReady, useUrls, useDeckCanvasSize, useUint8FeatureSelection, useExpressionValueGetter, useGetObsInfo, useObsEmbeddingData, useObsSetsData, useFeatureSelection, useObsFeatureMatrixIndices, useFeatureLabelsData, useMultiObsLabels, useSampleSetsData, useSampleEdgesData, useCoordination, useLoaders, useSetComponentHover, useSetComponentViewInfo, useInitialCoordination, useExpandedFeatureLabelsMap, useCoordinationScopes, } from '@vitessce/vit-s';
-import { setObsSelection, mergeObsSets, getCellSetPolygons, getCellColors, stratifyArrays, } from '@vitessce/sets-utils';
+import { setObsSelection, mergeObsSets, getCellSetPolygons, treeToColorIndicesArray, colorIndicesFromCodes, getObsIndexMap, stratifyArrays, } from '@vitessce/sets-utils';
 import { pluralize as plur, commaNumber, aggregateFeatureArrays } from '@vitessce/utils';
 import { Scatterplot, ScatterplotTooltipSubscriber, ScatterplotOptions, getPointSizeDevicePixels, getPointOpacity, } from '@vitessce/scatterplot';
 import { Legend } from '@vitessce/legend';
@@ -52,7 +52,7 @@ export function EmbeddingScatterplotSubscriber(props) {
     // Get data from loaders using the data hooks.
     const [{ obsIndex: obsEmbeddingIndex, obsEmbedding }, obsEmbeddingStatus, obsEmbeddingUrls, obsEmbeddingError,] = useObsEmbeddingData(loaders, dataset, true, {}, {}, { obsType, embeddingType: mapping });
     const cellsCount = obsEmbeddingIndex?.length || 0;
-    const [{ obsSets: cellSets, obsSetsMembership }, obsSetsStatus, obsSetsUrls, obsSetsError,] = useObsSetsData(loaders, dataset, false, { setObsSetSelection: setCellSetSelection, setObsSetColor: setCellSetColor }, { obsSetSelection: cellSetSelection, obsSetColor: cellSetColor }, { obsType });
+    const [{ obsSets: cellSets, obsSetsMembership, obsSetsColumns }, obsSetsStatus, obsSetsUrls, obsSetsError,] = useObsSetsData(loaders, dataset, false, { setObsSetSelection: setCellSetSelection, setObsSetColor: setCellSetColor }, { obsSetSelection: cellSetSelection, obsSetColor: cellSetColor }, { obsType });
     const [
     // eslint-disable-next-line no-unused-vars
     expressionData, loadedFeatureSelection, featureSelectionStatus, featureSelectionErrors,] = useFeatureSelection(loaders, dataset, false, geneSelection, { obsType, featureType, featureValueType });
@@ -90,6 +90,7 @@ export function EmbeddingScatterplotSubscriber(props) {
         sampleEdgesUrl,
     ]);
     const [dynamicCellRadius, setDynamicCellRadius] = useState(cellRadiusFixed);
+    const [isSelectionPending, setIsSelectionPending] = useState(false);
     const [dynamicCellOpacity, setDynamicCellOpacity] = useState(cellOpacityFixed);
     const [originalViewState, setOriginalViewState] = useState(null);
     const mergedCellSets = useMemo(() => mergeObsSets(cellSets, additionalCellSets), [cellSets, additionalCellSets]);
@@ -97,14 +98,33 @@ export function EmbeddingScatterplotSubscriber(props) {
         setObsSelection(v, additionalCellSets, cellSetColor, setCellSetSelection, setAdditionalCellSets, setCellSetColor, setCellColorEncoding);
     }, [additionalCellSets, cellSetColor, setCellColorEncoding,
         setAdditionalCellSets, setCellSetColor, setCellSetSelection]);
-    const cellColors = useMemo(() => getCellColors({
-        cellSets: mergedCellSets,
-        cellSetSelection,
-        cellSetColor,
-        obsIndex: matrixObsIndex,
-        theme,
-    }), [mergedCellSets, theme,
-        cellSetSelection, cellSetColor, matrixObsIndex]);
+    // A set selection or color change re-encodes every observation in the memos
+    // below, which at atlas scale takes longer than a frame. Deferring these values
+    // lets React commit the urgent update first — the sets manager checkbox that
+    // initiated the change paints immediately — and re-render this view afterwards.
+    // The urgent render sees the previous values, so the memos below keep their
+    // cached results and cost nothing in that first commit.
+    const deferredCellSetSelection = useDeferredValue(cellSetSelection);
+    const deferredCellSetColor = useDeferredValue(cellSetColor);
+    const deferredSampleSetSelection = useDeferredValue(sampleSetSelection);
+    // Positional rather than keyed by observation ID: at atlas scale an ID-keyed color
+    // Map costs one string hash lookup per point per render, plus a per-observation
+    // color array whenever the selected sets carry confidence scores.
+    const obsColorIndices = useMemo(() => (
+    // When the loader provides raw categorical codes over this same observation
+    // axis (checked by reference), the encoding is one typed-array pass with no
+    // tree walk. colorIndicesFromCodes returns null for selections it cannot
+    // resolve (e.g. user-defined lasso selections), falling back to the tree.
+    (obsSetsColumns && obsSetsColumns.obsIndex === obsEmbeddingIndex
+        && colorIndicesFromCodes({
+            columns: obsSetsColumns.columns,
+            obsIndex: obsEmbeddingIndex,
+            selectedNamePaths: deferredCellSetSelection,
+            cellSetColor: deferredCellSetColor,
+            theme,
+        }))
+        || treeToColorIndicesArray(mergedCellSets, deferredCellSetSelection, deferredCellSetColor, obsEmbeddingIndex, theme)), [mergedCellSets, deferredCellSetSelection, deferredCellSetColor,
+        obsEmbeddingIndex, theme, obsSetsColumns]);
     // cellSetPolygonCache is an array of tuples like [(key0, val0), (key1, val1), ...],
     // where the keys are cellSetSelection arrays.
     const [cellSetPolygonCache, setCellSetPolygonCache] = useState([]);
@@ -112,26 +132,26 @@ export function EmbeddingScatterplotSubscriber(props) {
     const cacheGet = (cache, key) => cache.find(el => isEqual(el[0], key))?.[1];
     const cellSetPolygons = useMemo(() => {
         if ((cellSetLabelsVisible || cellSetPolygonsVisible)
-            && !cacheHas(cellSetPolygonCache, cellSetSelection)
+            && !cacheHas(cellSetPolygonCache, deferredCellSetSelection)
             && mergedCellSets?.tree?.length
             && obsEmbedding
             && obsEmbeddingIndex
-            && cellSetColor?.length) {
+            && deferredCellSetColor?.length) {
             const newCellSetPolygons = getCellSetPolygons({
                 obsIndex: obsEmbeddingIndex,
                 obsEmbedding,
                 cellSets: mergedCellSets,
-                cellSetSelection,
-                cellSetColor,
+                cellSetSelection: deferredCellSetSelection,
+                cellSetColor: deferredCellSetColor,
                 theme,
             });
-            setCellSetPolygonCache(cache => [...cache, [cellSetSelection, newCellSetPolygons]]);
+            setCellSetPolygonCache(cache => [...cache, [deferredCellSetSelection, newCellSetPolygons]]);
             return newCellSetPolygons;
         }
-        return cacheGet(cellSetPolygonCache, cellSetSelection) || [];
+        return cacheGet(cellSetPolygonCache, deferredCellSetSelection) || [];
     }, [cellSetPolygonsVisible, cellSetPolygonCache, cellSetLabelsVisible, theme,
-        obsEmbeddingIndex, obsEmbedding, mergedCellSets, cellSetSelection, cellSetColor]);
-    const cellSelection = useMemo(() => Array.from(cellColors.keys()), [cellColors]);
+        obsEmbeddingIndex, obsEmbedding, mergedCellSets, deferredCellSetSelection,
+        deferredCellSetColor]);
     const [xRange, yRange, xExtent, yExtent, numCells] = useMemo(() => {
         if (obsEmbedding && obsEmbedding.data && obsEmbedding.shape) {
             const cellCount = obsEmbedding.shape[1];
@@ -178,8 +198,11 @@ export function EmbeddingScatterplotSubscriber(props) {
     }, [xRange, yRange, xExtent, yExtent, numCells,
         width, height, initialZoom, zoom, initialTargetX, initialTargetY, averageFillDensity]);
     const getObsInfo = useGetObsInfo(observationsLabel, obsLabelsTypes, obsLabelsData, obsSetsMembership);
-    const cellSelectionSet = useMemo(() => new Set(cellSelection), [cellSelection]);
-    const getCellIsSelected = useCallback((object, { index }) => ((cellSelectionSet || new Set([])).has(obsEmbeddingIndex[index]) ? 1.0 : 0.0), [cellSelectionSet, obsEmbeddingIndex]);
+    // With no set selection every observation counts as selected, matching the
+    // behavior of the ID-keyed color map this replaced. Uses the deferred selection
+    // so that it stays consistent with obsColorIndices within each commit.
+    const allCellsSelected = !(deferredCellSetSelection && mergedCellSets);
+    const getCellIsSelected = useCallback((object, { index }) => ((allCellsSelected || obsColorIndices.colorIndices[index] !== 0) ? 1.0 : 0.0), [allCellsSelected, obsColorIndices]);
     const cellRadius = (cellRadiusMode === 'manual' ? cellRadiusFixed : dynamicCellRadius);
     const cellOpacity = (cellOpacityMode === 'manual' ? cellOpacityFixed : dynamicCellOpacity);
     // Compute aggregated expression data if featureAggregationStrategyToUse is not null
@@ -259,8 +282,11 @@ export function EmbeddingScatterplotSubscriber(props) {
     // useExpressionValueGetter hook and getter function.
     const [alignedEmbeddingIndex, alignedEmbeddingData] = useMemo(() => {
         // Sort the embedding data according to the matrix obsIndex.
-        if (obsEmbedding?.data && obsEmbeddingIndex && matrixObsIndex) {
-            const matrixIndexMap = new Map(matrixObsIndex.map((key, i) => ([key, i])));
+        if (obsEmbedding?.data && obsEmbeddingIndex && matrixObsIndex
+            && obsEmbeddingIndex !== matrixObsIndex) {
+            // (The same index array, as when both come from one data source,
+            // is already aligned and skips this copy.)
+            const matrixIndexMap = getObsIndexMap(matrixObsIndex);
             const toMatrixIndex = obsEmbeddingIndex.map(key => matrixIndexMap.get(key));
             const newEmbeddingIndex = new Array(obsEmbeddingIndex.length);
             const newEmbeddingData = [
@@ -278,38 +304,28 @@ export function EmbeddingScatterplotSubscriber(props) {
         // Fall back to original ordering if no matrix data is present to align with.
         return [obsEmbeddingIndex, obsEmbedding];
     }, [matrixObsIndex, obsEmbeddingIndex, obsEmbedding]);
-    const sampleIdToObsIdsMap = useMemo(() => {
-        // sampleEdges maps obsId -> sampleId.
-        // However when we stratify we want to map sampleId -> [obsId1, obsId2, ...].
-        // Here we create this reverse mapping.
-        if (sampleEdges) {
-            const result = new Map();
-            Array.from(sampleEdges.entries()).forEach(([obsId, sampleId]) => {
-                if (!result.has(sampleId)) {
-                    result.set(sampleId, [obsId]);
-                }
-                else {
-                    result.get(sampleId).push(obsId);
-                }
-            });
-            return result;
-        }
-        return null;
-    }, [sampleEdges]);
     // Stratify multiple arrays: per-cellSet and per-sampleSet.
+    // The strata feed only the contour layers and, when the points are hidden, the
+    // observation count shown in the title — so with contours off and points on,
+    // this per-observation pass is skipped entirely rather than recomputed on
+    // every selection change.
+    const isStratifiedDataNeeded = embeddingContoursVisible || !embeddingPointsVisible;
     const [stratifiedData, stratifiedDataCount] = useMemo(() => {
-        if (alignedEmbeddingData?.data) {
-            const [result, cellCountResult] = stratifyArrays(sampleEdges, sampleIdToObsIdsMap, sampleSets, sampleSetSelection, alignedEmbeddingIndex, mergedCellSets, cellSetSelection, {
+        if (isStratifiedDataNeeded && alignedEmbeddingData?.data) {
+            const [result, cellCountResult] = stratifyArrays(sampleEdges, sampleSets, deferredSampleSetSelection, alignedEmbeddingIndex, mergedCellSets, deferredCellSetSelection, {
                 obsEmbeddingX: alignedEmbeddingData.data[0],
                 obsEmbeddingY: alignedEmbeddingData.data[1],
                 ...(uint8ExpressionData?.[0] ? { featureValue: uint8ExpressionData } : {}),
-            }, featureAggregationStrategyToUse);
+            }, featureAggregationStrategyToUse,
+            // Raw codes let the strata come from typed arrays when the indices match.
+            { obsSetsColumns });
             return [result, cellCountResult];
         }
         return [null, null];
-    }, [alignedEmbeddingIndex, alignedEmbeddingData, uint8ExpressionData,
-        sampleEdges, sampleIdToObsIdsMap, sampleSets, sampleSetSelection,
-        cellSetSelection, mergedCellSets, featureAggregationStrategyToUse,
+    }, [isStratifiedDataNeeded, alignedEmbeddingIndex, alignedEmbeddingData,
+        uint8ExpressionData, sampleEdges, sampleSets, deferredSampleSetSelection,
+        deferredCellSetSelection, mergedCellSets, featureAggregationStrategyToUse,
+        obsSetsColumns,
     ]);
     const setViewState = ({ zoom: newZoom, target }) => {
         setZoom(newZoom);
@@ -321,12 +337,12 @@ export function EmbeddingScatterplotSubscriber(props) {
     const cellCountToUse = embeddingPointsVisible
         ? cellsCount
         : (stratifiedDataCount ?? cellsCount);
-    return (_jsxs(TitleInfo, { title: title, info: `${commaNumber(cellCountToUse)} ${plur(observationsLabel, cellCountToUse)}`, closeButtonVisible: closeButtonVisible, downloadButtonVisible: downloadButtonVisible, removeGridComponent: removeGridComponent, urls: urls, theme: theme, isReady: isReady, helpText: helpText, errors: errors, options: (_jsx(ScatterplotOptions, { observationsLabel: observationsLabel, cellRadius: cellRadiusFixed, setCellRadius: setCellRadiusFixed, cellRadiusMode: cellRadiusMode, setCellRadiusMode: setCellRadiusMode, cellOpacity: cellOpacityFixed, setCellOpacity: setCellOpacityFixed, cellOpacityMode: cellOpacityMode, setCellOpacityMode: setCellOpacityMode, cellSetLabelsVisible: cellSetLabelsVisible, setCellSetLabelsVisible: setCellSetLabelsVisible, tooltipsVisible: tooltipsVisible, setTooltipsVisible: setTooltipsVisible, cellSetLabelSize: cellSetLabelSize, setCellSetLabelSize: setCellSetLabelSize, cellSetPolygonsVisible: cellSetPolygonsVisible, setCellSetPolygonsVisible: setCellSetPolygonsVisible, cellColorEncoding: cellColorEncoding, setCellColorEncoding: setCellColorEncoding, geneExpressionColormap: geneExpressionColormap, setGeneExpressionColormap: setGeneExpressionColormap, geneExpressionColormapRange: geneExpressionColormapRange, setGeneExpressionColormapRange: setGeneExpressionColormapRange, embeddingPointsVisible: embeddingPointsVisible, setEmbeddingPointsVisible: setEmbeddingPointsVisible, embeddingContoursVisible: embeddingContoursVisible, setEmbeddingContoursVisible: setEmbeddingContoursVisible, embeddingContoursFilled: embeddingContoursFilled, setEmbeddingContoursFilled: setEmbeddingContoursFilled, contourPercentiles: contourPercentiles, setContourPercentiles: setContourPercentiles, defaultContourPercentiles: DEFAULT_CONTOUR_PERCENTILES, contourColorEncoding: contourColorEncoding, setContourColorEncoding: setContourColorEncoding, featureAggregationStrategy: featureAggregationStrategy, setFeatureAggregationStrategy: setFeatureAggregationStrategy })), children: [_jsx(Scatterplot, { ref: deckRef, uuid: uuid, theme: theme, viewState: { zoom, target: [targetX, targetY, targetZ] }, setViewState: setViewState, originalViewState: originalViewState, obsEmbeddingIndex: obsEmbeddingIndex, obsEmbedding: obsEmbedding, cellFilter: cellFilter, cellSelection: cellSelection, cellHighlight: cellHighlight, cellColors: cellColors, cellSetPolygons: cellSetPolygons, cellSetLabelSize: cellSetLabelSize, cellSetLabelsVisible: cellSetLabelsVisible, cellSetPolygonsVisible: cellSetPolygonsVisible, setCellFilter: setCellFilter, setCellSelection: setCellSelectionProp, setCellHighlight: setCellHighlight, cellRadius: cellRadius, cellOpacity: cellOpacity, cellColorEncoding: cellColorEncoding, geneExpressionColormap: geneExpressionColormap, geneExpressionColormapRange: geneExpressionColormapRange, setComponentHover: () => {
+    return (_jsxs(TitleInfo, { title: title, info: `${commaNumber(cellCountToUse)} ${plur(observationsLabel, cellCountToUse)}`, closeButtonVisible: closeButtonVisible, downloadButtonVisible: downloadButtonVisible, removeGridComponent: removeGridComponent, urls: urls, theme: theme, isReady: isReady && !isSelectionPending, helpText: helpText, errors: errors, options: (_jsx(ScatterplotOptions, { observationsLabel: observationsLabel, cellRadius: cellRadiusFixed, setCellRadius: setCellRadiusFixed, cellRadiusMode: cellRadiusMode, setCellRadiusMode: setCellRadiusMode, cellOpacity: cellOpacityFixed, setCellOpacity: setCellOpacityFixed, cellOpacityMode: cellOpacityMode, setCellOpacityMode: setCellOpacityMode, cellSetLabelsVisible: cellSetLabelsVisible, setCellSetLabelsVisible: setCellSetLabelsVisible, tooltipsVisible: tooltipsVisible, setTooltipsVisible: setTooltipsVisible, cellSetLabelSize: cellSetLabelSize, setCellSetLabelSize: setCellSetLabelSize, cellSetPolygonsVisible: cellSetPolygonsVisible, setCellSetPolygonsVisible: setCellSetPolygonsVisible, cellColorEncoding: cellColorEncoding, setCellColorEncoding: setCellColorEncoding, geneExpressionColormap: geneExpressionColormap, setGeneExpressionColormap: setGeneExpressionColormap, geneExpressionColormapRange: geneExpressionColormapRange, setGeneExpressionColormapRange: setGeneExpressionColormapRange, embeddingPointsVisible: embeddingPointsVisible, setEmbeddingPointsVisible: setEmbeddingPointsVisible, embeddingContoursVisible: embeddingContoursVisible, setEmbeddingContoursVisible: setEmbeddingContoursVisible, embeddingContoursFilled: embeddingContoursFilled, setEmbeddingContoursFilled: setEmbeddingContoursFilled, contourPercentiles: contourPercentiles, setContourPercentiles: setContourPercentiles, defaultContourPercentiles: DEFAULT_CONTOUR_PERCENTILES, contourColorEncoding: contourColorEncoding, setContourColorEncoding: setContourColorEncoding, featureAggregationStrategy: featureAggregationStrategy, setFeatureAggregationStrategy: setFeatureAggregationStrategy })), children: [_jsx(Scatterplot, { ref: deckRef, uuid: uuid, onSelectionBusy: setIsSelectionPending, theme: theme, viewState: { zoom, target: [targetX, targetY, targetZ] }, setViewState: setViewState, originalViewState: originalViewState, obsEmbeddingIndex: obsEmbeddingIndex, obsEmbedding: obsEmbedding, cellFilter: cellFilter, cellHighlight: cellHighlight, obsColorIndices: obsColorIndices, cellSetPolygons: cellSetPolygons, cellSetLabelSize: cellSetLabelSize, cellSetLabelsVisible: cellSetLabelsVisible, cellSetPolygonsVisible: cellSetPolygonsVisible, setCellFilter: setCellFilter, setCellSelection: setCellSelectionProp, setCellHighlight: setCellHighlight, cellRadius: cellRadius, cellOpacity: cellOpacity, cellColorEncoding: cellColorEncoding, geneExpressionColormap: geneExpressionColormap, geneExpressionColormapRange: geneExpressionColormapRange, setComponentHover: () => {
                     setComponentHover(uuid);
-                }, updateViewInfo: setComponentViewInfo, getExpressionValue: getExpressionValue, getCellIsSelected: getCellIsSelected, obsSetSelection: cellSetSelection, sampleSetSelection: sampleSetSelection,
+                }, updateViewInfo: setComponentViewInfo, getExpressionValue: getExpressionValue, getCellIsSelected: getCellIsSelected, obsSetSelection: deferredCellSetSelection, sampleSetSelection: deferredSampleSetSelection,
                 // InternMap data structures where keys are
                 // obsSet -> sampleSet -> arrayKey -> [].
-                stratifiedData: stratifiedData, obsSetColor: cellSetColor, sampleSetColor: sampleSetColor, contourThresholds: contourThresholds, contourColorEncoding: contourColorEncoding, contourColor: contourColor, contoursFilled: embeddingContoursFilled, embeddingPointsVisible: embeddingPointsVisible, embeddingContoursVisible: embeddingContoursVisible, circleInfo: circleInfo, featureSelection: geneSelection }), tooltipsVisible && width && height ? (_jsx(ScatterplotTooltipSubscriber, { parentUuid: uuid, obsHighlight: cellHighlight, width: width, height: height, getObsInfo: getObsInfo, featureType: featureType, featureLabelsMap: featureLabelsMap })) : null, _jsx(Legend, { visible: true, theme: theme, featureType: featureType, featureValueType: featureValueType, obsColorEncoding: cellColorEncoding, featureSelection: geneSelection, featureLabelsMap: featureLabelsMap, featureValueColormap: geneExpressionColormap, featureValueColormapRange: geneExpressionColormapRange, setFeatureValueColormapRange: setGeneExpressionColormapRange, obsSetSelection: cellSetSelection, extent: expressionExtents, missing: expressionMissing,
+                stratifiedData: stratifiedData, obsSetColor: deferredCellSetColor, sampleSetColor: sampleSetColor, contourThresholds: contourThresholds, contourColorEncoding: contourColorEncoding, contourColor: contourColor, contoursFilled: embeddingContoursFilled, embeddingPointsVisible: embeddingPointsVisible, embeddingContoursVisible: embeddingContoursVisible, circleInfo: circleInfo, featureSelection: geneSelection }), tooltipsVisible && width && height ? (_jsx(ScatterplotTooltipSubscriber, { parentUuid: uuid, obsHighlight: cellHighlight, width: width, height: height, getObsInfo: getObsInfo, featureType: featureType, featureLabelsMap: featureLabelsMap })) : null, _jsx(Legend, { visible: true, theme: theme, featureType: featureType, featureValueType: featureValueType, obsColorEncoding: cellColorEncoding, featureSelection: geneSelection, featureLabelsMap: featureLabelsMap, featureValueColormap: geneExpressionColormap, featureValueColormapRange: geneExpressionColormapRange, setFeatureValueColormapRange: setGeneExpressionColormapRange, obsSetSelection: cellSetSelection, extent: expressionExtents, missing: expressionMissing,
                 // Contour percentile legend
                 pointsVisible: embeddingPointsVisible, contoursVisible: embeddingContoursVisible, contoursFilled: embeddingContoursFilled, contourPercentiles: contourPercentiles || DEFAULT_CONTOUR_PERCENTILES, contourThresholds: contourThresholds, featureAggregationStrategy: featureAggregationStrategyToUse })] }));
 }

package/dist-tsc/EmbeddingScatterplotSubscriber.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/scatterplot-embedding",
-  "version": "4.0.4",
+  "version": "4.0.5",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -20,13 +20,13 @@
     "lodash-es": "^4.17.21",
     "react-aria": "^3.47.0",
     "@turf/circle": "^7.2.0",
-    "@vitessce/styles": "4.0.4",
-    "@vitessce/legend": "4.0.4",
-    "@vitessce/scatterplot": "4.0.4",
-    "@vitessce/sets-utils": "4.0.4",
-    "@vitessce/constants-internal": "4.0.4",
-    "@vitessce/vit-s": "4.0.4",
-    "@vitessce/utils": "4.0.4"
+    "@vitessce/styles": "4.0.5",
+    "@vitessce/constants-internal": "4.0.5",
+    "@vitessce/legend": "4.0.5",
+    "@vitessce/scatterplot": "4.0.5",
+    "@vitessce/sets-utils": "4.0.5",
+    "@vitessce/utils": "4.0.5",
+    "@vitessce/vit-s": "4.0.5"
   },
   "devDependencies": {
     "react": "19.2.6",