@vitessce/scatterplot-embedding 3.9.5 → 3.9.7

package/dist/{deflate-CWfNPY8G.js → deflate-CPKmTD_H.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { B as BaseDecoder } from "./index-CDWR6IMJ.js";
+import { B as BaseDecoder } from "./index-BFIHjDqy.js";
 class DeflateDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return inflate_1(new Uint8Array(buffer)).buffer;

package/dist/{index-CDWR6IMJ.js → index-BFIHjDqy.js}

@@ -9773,6 +9773,7 @@ const FileType$1 = {
   // Neuroglancer
   // Precomputed (mesh) format
   OBS_SEGMENTATIONS_NG_PRECOMPUTED: "obsSegmentations.ng-precomputed",
+  OBS_POINTS_NG_ANNOTATIONS: "obsPoints.ng-annotations",
   // New file types to support old file types:
   // - cells.json
   OBS_EMBEDDING_CELLS_JSON: "obsEmbedding.cells.json",
@@ -10004,6 +10005,7 @@ const ViewHelpMapping = {
   [FileType$1.FEATURE_LABELS_MUDATA_ZARR]: DataType$2.FEATURE_LABELS,
   [FileType$1.OBS_SEGMENTATIONS_GLB]: DataType$2.OBS_SEGMENTATIONS,
   [FileType$1.OBS_SEGMENTATIONS_NG_PRECOMPUTED]: DataType$2.OBS_SEGMENTATIONS,
+  [FileType$1.OBS_POINTS_NG_ANNOTATIONS]: DataType$2.OBS_POINTS,
   [FileType$1.IMAGE_SPATIALDATA_ZARR]: DataType$2.IMAGE,
   [FileType$1.LABELS_SPATIALDATA_ZARR]: DataType$2.OBS_SEGMENTATIONS,
   [FileType$1.SHAPES_SPATIALDATA_ZARR]: DataType$2.OBS_SEGMENTATIONS,
@@ -10223,6 +10225,8 @@ const ViewHelpMapping = {
 ];
 const COMPONENT_COORDINATION_TYPES = {
   [ViewType$1.NEUROGLANCER]: [
+    CoordinationType$1.META_COORDINATION_SCOPES,
+    CoordinationType$1.META_COORDINATION_SCOPES_BY,
     CoordinationType$1.DATASET,
     CoordinationType$1.SPATIAL_TARGET_X,
     CoordinationType$1.SPATIAL_TARGET_Y,
@@ -10244,7 +10248,26 @@ const COMPONENT_COORDINATION_TYPES = {
     CoordinationType$1.OBS_COLOR_ENCODING,
     CoordinationType$1.EMBEDDING_TYPE,
     CoordinationType$1.ADDITIONAL_OBS_SETS,
-    CoordinationType$1.TOOLTIPS_VISIBLE
+    CoordinationType$1.TOOLTIPS_VISIBLE,
+    CoordinationType$1.FILE_UID,
+    CoordinationType$1.IMAGE_LAYER,
+    CoordinationType$1.SEGMENTATION_LAYER,
+    CoordinationType$1.IMAGE_CHANNEL,
+    CoordinationType$1.SEGMENTATION_CHANNEL,
+    CoordinationType$1.POINT_LAYER,
+    CoordinationType$1.FEATURE_COLOR,
+    CoordinationType$1.FEATURE_FILTER_MODE,
+    CoordinationType$1.FEATURE_HIGHLIGHT,
+    CoordinationType$1.FEATURE_SELECTION,
+    CoordinationType$1.FEATURE_VALUE_COLORMAP,
+    CoordinationType$1.FEATURE_VALUE_COLORMAP_RANGE,
+    CoordinationType$1.SPATIAL_LAYER_COLOR,
+    CoordinationType$1.SPATIAL_LAYER_OPACITY,
+    CoordinationType$1.SPATIAL_LAYER_VISIBLE,
+    CoordinationType$1.SPATIAL_CHANNEL_COLOR,
+    CoordinationType$1.SPATIAL_CHANNEL_OPACITY,
+    CoordinationType$1.SPATIAL_CHANNEL_VISIBLE,
+    CoordinationType$1.LEGEND_VISIBLE
   ],
   [ViewType$1.SCATTERPLOT]: [
     CoordinationType$1.DATASET,
@@ -11288,14 +11311,23 @@ z.object({
 z.object({
   // TODO: Should this explicitly specify sharded vs. unsharded?
   // Or can/should that be inferred from the data?
-  dimensionX: z.number(),
-  dimensionY: z.number(),
-  dimensionZ: z.number(),
-  dimensionUnit: z.enum(["nm", "um", "µm", "mm", "cm", "m"]),
+  // Note: None of these make sense to specify at the file level, since they
+  // are global camera settings that would apply to all layers.
+  // Intead, initial values should be set via the usual coordination space mechanism,
+  // and the NeuroglancerSubscriber should handle conversion into values to pass to Neuroglancer.
+  // dimensionX: z.number(),
+  // dimensionY: z.number(),
+  // dimensionZ: z.number(),
+  // dimensionUnit: z.enum(['nm', 'um', 'µm', 'mm', 'cm', 'm']),
   // TODO: should the following be passed via coordination types instead?
-  projectionScale: z.number(),
-  position: z.array(z.number()).length(3),
-  projectionOrientation: z.array(z.number()).length(4)
+  // projectionScale: z.number(),
+  // position: z.array(z.number()).length(3),
+  // projectionOrientation: z.array(z.number()).length(4),
+}).partial().nullable();
+z.object({
+  projectionAnnotationSpacing: z.number(),
+  featureIndexProp: z.string().optional().describe("The name of the Neuroglancer AnnotationProperty containing feature IDs. For example, specify 'gene' to use prop_gene() in the Neuroglancer shader code."),
+  pointIndexProp: z.string().optional().describe("The name of the Neuroglancer AnnotationProperty containing point IDs. For example, specify 'point_id' to use prop_point_id() in the Neuroglancer shader code.")
 }).partial().nullable();
 z.object({
   obsIndex: z.string(),
@@ -123422,22 +123454,22 @@ function addDecoder(cases, importFn) {
   }
   cases.forEach((c2) => registry$1.set(c2, importFn));
 }
-addDecoder([void 0, 1], () => import("./raw-VHHlcd3d.js").then((m2) => m2.default));
-addDecoder(5, () => import("./lzw-C2v0Vgro.js").then((m2) => m2.default));
+addDecoder([void 0, 1], () => import("./raw-EACDAQyt.js").then((m2) => m2.default));
+addDecoder(5, () => import("./lzw-gYw3lEmK.js").then((m2) => m2.default));
 addDecoder(6, () => {
   throw new Error("old style JPEG compression is not supported.");
 });
-addDecoder(7, () => import("./jpeg-D1J3Yyuv.js").then((m2) => m2.default));
-addDecoder([8, 32946], () => import("./deflate-CWfNPY8G.js").then((m2) => m2.default));
-addDecoder(32773, () => import("./packbits-BdcRH7tW.js").then((m2) => m2.default));
+addDecoder(7, () => import("./jpeg-DHOm-lsS.js").then((m2) => m2.default));
+addDecoder([8, 32946], () => import("./deflate-CPKmTD_H.js").then((m2) => m2.default));
+addDecoder(32773, () => import("./packbits-C5YjAXWF.js").then((m2) => m2.default));
 addDecoder(
   34887,
-  () => import("./lerc-BPUie9tO.js").then(async (m2) => {
+  () => import("./lerc-BNgwp9p4.js").then(async (m2) => {
     await m2.zstd.init();
     return m2;
   }).then((m2) => m2.default)
 );
-addDecoder(50001, () => import("./webimage-DmwF48h3.js").then((m2) => m2.default));
+addDecoder(50001, () => import("./webimage-BZfJm-XR.js").then((m2) => m2.default));
 function decodeRowAcc(row, stride) {
   let length2 = row.length - stride;
   let offset2 = 0;

package/dist/index.js

@@ -1,4 +1,4 @@
-import { D, E } from "./index-CDWR6IMJ.js";
+import { D, E } from "./index-BFIHjDqy.js";
 export {
   D as DualEmbeddingScatterplotSubscriber,
   E as EmbeddingScatterplotSubscriber

package/dist/{jpeg-D1J3Yyuv.js → jpeg-DHOm-lsS.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-CDWR6IMJ.js";
+import { B as BaseDecoder } from "./index-BFIHjDqy.js";
 const dctZigZag = new Int32Array([
   0,
   1,

package/dist/{lerc-BPUie9tO.js → lerc-BNgwp9p4.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-CDWR6IMJ.js";
+import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-BFIHjDqy.js";
 const LercParameters = {
   AddCompression: 1
 };

package/dist/{lzw-C2v0Vgro.js → lzw-gYw3lEmK.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-CDWR6IMJ.js";
+import { B as BaseDecoder } from "./index-BFIHjDqy.js";
 const MIN_BITS = 9;
 const CLEAR_CODE = 256;
 const EOI_CODE = 257;

package/dist/{packbits-BdcRH7tW.js → packbits-C5YjAXWF.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-CDWR6IMJ.js";
+import { B as BaseDecoder } from "./index-BFIHjDqy.js";
 class PackbitsDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     const dataView = new DataView(buffer);

package/dist/{raw-VHHlcd3d.js → raw-EACDAQyt.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-CDWR6IMJ.js";
+import { B as BaseDecoder } from "./index-BFIHjDqy.js";
 class RawDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return buffer;

package/dist/{webimage-DmwF48h3.js → webimage-BZfJm-XR.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-CDWR6IMJ.js";
+import { B as BaseDecoder } from "./index-BFIHjDqy.js";
 class WebImageDecoder extends BaseDecoder {
   constructor() {
     super();

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/scatterplot-embedding",
-  "version": "3.9.5",
+  "version": "3.9.7",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -20,13 +20,13 @@
     "lodash-es": "^4.17.21",
     "react-aria": "^3.28.0",
     "@turf/circle": "^7.2.0",
-    "@vitessce/constants-internal": "3.9.5",
-    "@vitessce/legend": "3.9.5",
-    "@vitessce/scatterplot": "3.9.5",
-    "@vitessce/sets-utils": "3.9.5",
-    "@vitessce/styles": "3.9.5",
-    "@vitessce/vit-s": "3.9.5",
-    "@vitessce/utils": "3.9.5"
+    "@vitessce/styles": "3.9.7",
+    "@vitessce/constants-internal": "3.9.7",
+    "@vitessce/legend": "3.9.7",
+    "@vitessce/scatterplot": "3.9.7",
+    "@vitessce/sets-utils": "3.9.7",
+    "@vitessce/utils": "3.9.7",
+    "@vitessce/vit-s": "3.9.7"
   },
   "devDependencies": {
     "react": "18.3.1",