@vitessce/scatterplot-embedding 3.8.0 → 3.8.2

package/dist/{deflate-BVs8YiyO.js → deflate-BPNH0-gs.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { B as BaseDecoder } from "./index-Bq7XVVZk.js";
+import { B as BaseDecoder } from "./index-BUnpJvPA.js";
 class DeflateDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return inflate_1(new Uint8Array(buffer)).buffer;

package/dist/{index-Bq7XVVZk.js → index-BUnpJvPA.js}

@@ -9558,7 +9558,7 @@ const ViewType$1 = {
   SCATTERPLOT: "scatterplot",
   SPATIAL: "spatial",
   SPATIAL_BETA: "spatialBeta",
-  SPATIAL_ACCELERATED: "spatialAccelerated",
+  // SPATIAL_ACCELERATED: 'spatialAccelerated',
   HEATMAP: "heatmap",
   LAYER_CONTROLLER: "layerController",
   LAYER_CONTROLLER_BETA: "layerControllerBeta",
@@ -9716,6 +9716,9 @@ const FileType$1 = {
   OBS_SEGMENTATIONS_OME_TIFF: "obsSegmentations.ome-tiff",
   // GLB
   OBS_SEGMENTATIONS_GLB: "obsSegmentations.glb",
+  // Neuroglancer
+  // Precomputed (mesh) format
+  OBS_SEGMENTATIONS_NG_PRECOMPUTED: "obsSegmentations.ng-precomputed",
   // New file types to support old file types:
   // - cells.json
   OBS_EMBEDDING_CELLS_JSON: "obsEmbedding.cells.json",
@@ -9943,6 +9946,7 @@ const ViewHelpMapping = {
   [FileType$1.OBS_LABELS_MUDATA_ZARR]: DataType$2.OBS_LABELS,
   [FileType$1.FEATURE_LABELS_MUDATA_ZARR]: DataType$2.FEATURE_LABELS,
   [FileType$1.OBS_SEGMENTATIONS_GLB]: DataType$2.OBS_SEGMENTATIONS,
+  [FileType$1.OBS_SEGMENTATIONS_NG_PRECOMPUTED]: DataType$2.OBS_SEGMENTATIONS,
   [FileType$1.IMAGE_SPATIALDATA_ZARR]: DataType$2.IMAGE,
   [FileType$1.LABELS_SPATIALDATA_ZARR]: DataType$2.OBS_SEGMENTATIONS,
   [FileType$1.SHAPES_SPATIALDATA_ZARR]: DataType$2.OBS_SEGMENTATIONS,
@@ -11206,6 +11210,18 @@ z.object({
   sceneScaleZ: z.number(),
   materialSide: z.enum(["front", "back"])
 }).partial().nullable();
+z.object({
+  // TODO: Should this explicitly specify sharded vs. unsharded?
+  // Or can/should that be inferred from the data?
+  dimensionX: z.number(),
+  dimensionY: z.number(),
+  dimensionZ: z.number(),
+  dimensionUnit: z.enum(["nm", "um", "µm", "mm", "cm", "m"]),
+  // TODO: should the following be passed via coordination types instead?
+  projectionScale: z.number(),
+  position: z.array(z.number()).length(3),
+  projectionOrientation: z.array(z.number()).length(4)
+}).partial().nullable();
 z.object({
   obsIndex: z.string(),
   obsEmbedding: z.array(z.string()).length(2)
@@ -123328,22 +123344,22 @@ function addDecoder(cases, importFn) {
   }
   cases.forEach((c2) => registry$1.set(c2, importFn));
 }
-addDecoder([void 0, 1], () => import("./raw-vP3CdH6_.js").then((m2) => m2.default));
-addDecoder(5, () => import("./lzw-UC-SuV7m.js").then((m2) => m2.default));
+addDecoder([void 0, 1], () => import("./raw-CYgoEHqR.js").then((m2) => m2.default));
+addDecoder(5, () => import("./lzw-C3MiI_oL.js").then((m2) => m2.default));
 addDecoder(6, () => {
   throw new Error("old style JPEG compression is not supported.");
 });
-addDecoder(7, () => import("./jpeg-SiblH6Cu.js").then((m2) => m2.default));
-addDecoder([8, 32946], () => import("./deflate-BVs8YiyO.js").then((m2) => m2.default));
-addDecoder(32773, () => import("./packbits-Bpsmxlv2.js").then((m2) => m2.default));
+addDecoder(7, () => import("./jpeg-HkMzLFbL.js").then((m2) => m2.default));
+addDecoder([8, 32946], () => import("./deflate-BPNH0-gs.js").then((m2) => m2.default));
+addDecoder(32773, () => import("./packbits-CtWmjnkM.js").then((m2) => m2.default));
 addDecoder(
   34887,
-  () => import("./lerc-CAFxbgCZ.js").then(async (m2) => {
+  () => import("./lerc-BL5Xy_sd.js").then(async (m2) => {
     await m2.zstd.init();
     return m2;
   }).then((m2) => m2.default)
 );
-addDecoder(50001, () => import("./webimage-DR1LwE21.js").then((m2) => m2.default));
+addDecoder(50001, () => import("./webimage-yN7Q3b16.js").then((m2) => m2.default));
 function decodeRowAcc(row, stride) {
   let length2 = row.length - stride;
   let offset2 = 0;
@@ -150049,13 +150065,13 @@ function IconButton(props) {
 function ToolMenu(props) {
   const pointerIconAltText = "Pointer tool";
   const lassoIconAltText = "Select lasso";
-  const { setActiveTool, activeTool, visibleTools = { pan: true, selectLasso: true }, recenterOnClick = () => {
+  const { setActiveTool, activeTool, visibleTools = { pan: true, selectLasso: true, recenter: true }, recenterOnClick = () => {
   } } = props;
   const { classes } = useStyles$3();
   const onRecenterButtonCLick = () => {
     recenterOnClick();
   };
-  return jsxRuntimeExports.jsxs("div", { className: classes.tool, children: [visibleTools.pan && jsxRuntimeExports.jsx(IconTool, { alt: pointerIconAltText, onClick: () => setActiveTool(null), isActive: activeTool === null, children: jsxRuntimeExports.jsx(SvgNearMe, {}) }), visibleTools.selectLasso ? jsxRuntimeExports.jsx(IconTool, { alt: lassoIconAltText, onClick: () => setActiveTool(distEs6Exports$2.SELECTION_TYPE.POLYGON), isActive: activeTool === distEs6Exports$2.SELECTION_TYPE.POLYGON, children: jsxRuntimeExports.jsx(SvgSelectionLasso, {}) }) : null, jsxRuntimeExports.jsx(IconButton, { alt: "click to recenter", onClick: () => onRecenterButtonCLick(), "aria-label": "Recenter scatterplot view", children: jsxRuntimeExports.jsx(CenterFocusStrong, {}) })] });
+  return jsxRuntimeExports.jsxs("div", { className: classes.tool, children: [visibleTools.pan && jsxRuntimeExports.jsx(IconTool, { alt: pointerIconAltText, onClick: () => setActiveTool(null), isActive: activeTool === null, children: jsxRuntimeExports.jsx(SvgNearMe, {}) }), visibleTools.selectLasso ? jsxRuntimeExports.jsx(IconTool, { alt: lassoIconAltText, onClick: () => setActiveTool(distEs6Exports$2.SELECTION_TYPE.POLYGON), isActive: activeTool === distEs6Exports$2.SELECTION_TYPE.POLYGON, children: jsxRuntimeExports.jsx(SvgSelectionLasso, {}) }) : null, visibleTools.recenter ? jsxRuntimeExports.jsx(IconButton, { alt: "click to recenter", onClick: () => onRecenterButtonCLick(), "aria-label": "Recenter scatterplot view", children: jsxRuntimeExports.jsx(CenterFocusStrong, {}) }) : null] });
 }
 const getCursorWithTool = () => "crosshair";
 const getCursor = (interactionState) => interactionState.isDragging ? "grabbing" : "default";
@@ -150290,7 +150306,7 @@ class AbstractSpatialOrScatterplot extends PureComponent {
    */
   render() {
     var _a3, _b2, _c, _d;
-    const { deckRef, viewState, uuid, hideTools, orbitAxis } = this.props;
+    const { deckRef, viewState, uuid, hideTools, hideRecenter, orbitAxis } = this.props;
     const { gl, tool } = this.state;
     const layers = this.getLayers();
     const use3d = this.use3d();
@@ -150299,7 +150315,8 @@ class AbstractSpatialOrScatterplot extends PureComponent {
     const useDevicePixels = !use3d && (((_b2 = (_a3 = this.obsSegmentationsData) == null ? void 0 : _a3.shape) == null ? void 0 : _b2[0]) < 1e5 || ((_d = (_c = this.obsLocationsData) == null ? void 0 : _c.shape) == null ? void 0 : _d[1]) < 1e5);
     return jsxRuntimeExports.jsxs(jsxRuntimeExports.Fragment, { children: [jsxRuntimeExports.jsx(ToolMenu, { activeTool: tool, setActiveTool: this.onToolChange, visibleTools: {
       pan: showPanTool && !hideTools,
-      selectLasso: showCellSelectionTools && !hideTools
+      selectLasso: showCellSelectionTools && !hideTools,
+      recenter: !hideRecenter
     }, recenterOnClick: this.recenter }), jsxRuntimeExports.jsx(DeckGL, { id: `deckgl-overlay-${uuid}`, ref: deckRef, views: [
       use3d ? new OrbitView({ id: "orbit", controller: true, orbitAxis }) : new OrthographicView({
         id: "ortho"

package/dist/index.js

@@ -1,4 +1,4 @@
-import { D, E } from "./index-Bq7XVVZk.js";
+import { D, E } from "./index-BUnpJvPA.js";
 export {
   D as DualEmbeddingScatterplotSubscriber,
   E as EmbeddingScatterplotSubscriber

package/dist/{jpeg-SiblH6Cu.js → jpeg-HkMzLFbL.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-Bq7XVVZk.js";
+import { B as BaseDecoder } from "./index-BUnpJvPA.js";
 const dctZigZag = new Int32Array([
   0,
   1,

package/dist/{lerc-CAFxbgCZ.js → lerc-BL5Xy_sd.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-Bq7XVVZk.js";
+import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-BUnpJvPA.js";
 const LercParameters = {
   AddCompression: 1
 };

package/dist/{lzw-UC-SuV7m.js → lzw-C3MiI_oL.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-Bq7XVVZk.js";
+import { B as BaseDecoder } from "./index-BUnpJvPA.js";
 const MIN_BITS = 9;
 const CLEAR_CODE = 256;
 const EOI_CODE = 257;

package/dist/{packbits-Bpsmxlv2.js → packbits-CtWmjnkM.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-Bq7XVVZk.js";
+import { B as BaseDecoder } from "./index-BUnpJvPA.js";
 class PackbitsDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     const dataView = new DataView(buffer);

package/dist/{raw-vP3CdH6_.js → raw-CYgoEHqR.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-Bq7XVVZk.js";
+import { B as BaseDecoder } from "./index-BUnpJvPA.js";
 class RawDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return buffer;

package/dist/{webimage-DR1LwE21.js → webimage-yN7Q3b16.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-Bq7XVVZk.js";
+import { B as BaseDecoder } from "./index-BUnpJvPA.js";
 class WebImageDecoder extends BaseDecoder {
   constructor() {
     super();

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/scatterplot-embedding",
-  "version": "3.8.0",
+  "version": "3.8.2",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -20,13 +20,13 @@
     "lodash-es": "^4.17.21",
     "react-aria": "^3.28.0",
     "@turf/circle": "^7.2.0",
-    "@vitessce/styles": "3.8.0",
-    "@vitessce/constants-internal": "3.8.0",
-    "@vitessce/legend": "3.8.0",
-    "@vitessce/scatterplot": "3.8.0",
-    "@vitessce/sets-utils": "3.8.0",
-    "@vitessce/utils": "3.8.0",
-    "@vitessce/vit-s": "3.8.0"
+    "@vitessce/styles": "3.8.2",
+    "@vitessce/constants-internal": "3.8.2",
+    "@vitessce/legend": "3.8.2",
+    "@vitessce/scatterplot": "3.8.2",
+    "@vitessce/sets-utils": "3.8.2",
+    "@vitessce/utils": "3.8.2",
+    "@vitessce/vit-s": "3.8.2"
   },
   "devDependencies": {
     "react": "18.3.1",