@vitessce/scatterplot-embedding 3.4.11 → 3.4.14

package/dist/{deflate-9e699c70.js → deflate-8db7a1fd.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
-import { B as BaseDecoder } from "./index-f135e4b2.js";
+import { B as BaseDecoder } from "./index-b7514fa1.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{index-f135e4b2.js → index-b7514fa1.js}

@@ -11049,6 +11049,9 @@ const FileType$1 = {
   // OME-Zarr
   IMAGE_OME_ZARR: "image.ome-zarr",
   OBS_SEGMENTATIONS_OME_ZARR: "obsSegmentations.ome-zarr",
+  // OME-Zarr - Zipped
+  IMAGE_OME_ZARR_ZIP: "image.ome-zarr.zip",
+  OBS_SEGMENTATIONS_OME_ZARR_ZIP: "obsSegmentations.ome-zarr.zip",
   // AnnData
   OBS_FEATURE_MATRIX_ANNDATA_ZARR: "obsFeatureMatrix.anndata.zarr",
   OBS_FEATURE_COLUMNS_ANNDATA_ZARR: "obsFeatureColumns.anndata.zarr",
@@ -11155,6 +11158,7 @@ const CoordinationType$1 = {
   FEATURE_TYPE: "featureType",
   FEATURE_VALUE_TYPE: "featureValueType",
   OBS_LABELS_TYPE: "obsLabelsType",
+  FEATURE_LABELS_TYPE: "featureLabelsType",
   // Other types
   EMBEDDING_TYPE: "embeddingType",
   EMBEDDING_ZOOM: "embeddingZoom",
@@ -11964,7 +11968,7 @@ const annDataObsSetsArr = z.array(z.object({
   ]),
   scorePath: z.string().optional().describe("The location in the AnnData store for the set confidence scores, like 'obs/celltype_prediction_score.'")
 }));
-const annDataObsSets = z.object({
+z.object({
   obsSets: annDataObsSetsArr
 });
 const annDataObsFeatureColumnsArr = z.array(z.object({
@@ -12004,29 +12008,34 @@ const imageOmeZarrSchema = z.object({
 imageOmeZarrSchema.extend({
   obsTypesFromChannelNames: z.boolean().optional()
 });
-const imageSpatialdataSchema = imageOmeZarrSchema.extend({
-  path: z.string()
+const imageSpatialdataSchema = z.object({
+  path: z.string(),
+  coordinateSystem: z.string().optional().describe('The name of a coordinate transformation output used to transform the image. If not provided, the "global" coordinate system is assumed.')
 });
 const obsSegmentationsSpatialdataSchema = z.object({
-  // TODO: should this also extend the imageOmeZarrSchema?
   // TODO: should this be renamed labelsSpatialdataSchema?
   // TODO: support obsTypesFromChannelNames?
-  path: z.string()
+  path: z.string(),
+  tablePath: z.string().optional().describe("The path to a table which annotates the labels. If available but not specified, the spot identifiers may not be aligned with associated tabular data as expected."),
+  coordinateSystem: z.string().optional().describe('The name of a coordinate transformation output used to transform the image. If not provided, the "global" coordinate system is assumed.')
 });
 z.object({
-  path: z.string()
+  path: z.string(),
+  coordinateSystem: z.string().optional().describe('The name of a coordinate transformation output used to transform the coordinates. If not provided, the "global" coordinate system is assumed.')
 });
 const obsSpotsSpatialdataSchema = z.object({
   path: z.string(),
-  tablePath: z.string().optional().describe("The path to a table which annotates the spots. If available but not specified, the spot identifiers may not be aligned with associated tabular data as expected.")
+  tablePath: z.string().optional().describe("The path to a table which annotates the spots. If available but not specified, the spot identifiers may not be aligned with associated tabular data as expected."),
+  coordinateSystem: z.string().optional().describe('The name of a coordinate transformation output used to transform the coordinates and radii. If not provided, the "global" coordinate system is assumed.')
 });
 const obsFeatureMatrixSpatialdataSchema = annDataObsFeatureMatrix.extend({
-  region: z.string().describe("The name of a region to use to filter instances (i.e., rows) in the table").optional()
+  region: z.string().describe("The name of a region to use to filter instances (i.e., rows) in the table").optional(),
+  coordinateSystem: z.string().optional().describe('The name of a coordinate transformation output used to transform the image. If not provided, the "global" coordinate system is assumed.')
 });
 const obsSetsSpatialdataSchema = z.object({
   region: z.string().describe("The name of a region to use to filter instances (i.e., rows) in the table").optional(),
   tablePath: z.string().optional().describe("The path to a table which contains the index for the set values."),
-  obsSets: annDataObsSets
+  obsSets: annDataObsSetsArr
 });
 z.object({
   targetX: z.number(),
@@ -12122,15 +12131,21 @@ anndataZarrSchema.extend({
 z.object({
   // TODO: should `image` be a special schema
   // to allow specifying fileUid (like for embeddingType)?
+  // TODO: allow multiple images
   image: imageSpatialdataSchema,
   // TODO: should this be a special schema
   // to allow specifying fileUid (like for embeddingType)?
+  // TODO: allow multiple labels
   labels: obsSegmentationsSpatialdataSchema,
   obsFeatureMatrix: obsFeatureMatrixSpatialdataSchema,
   obsSpots: obsSpotsSpatialdataSchema,
   // TODO: obsPoints
   // TODO: obsLocations
-  obsSets: obsSetsSpatialdataSchema
+  obsSets: obsSetsSpatialdataSchema,
+  // TODO: obsEmbedding
+  // TODO: obsLabels
+  // TODO: featureLabels
+  coordinateSystem: z.string().optional().describe("The name of a coordinate transformation output used to transform all elements which lack a per-element coordinateSystem property.")
 }).partial();
 z.object({
   obsLabelsTypes: z.array(z.string()).optional(),
@@ -123957,16 +123972,16 @@ function addDecoder(cases, importFn) {
   }
   cases.forEach((c2) => registry$1.set(c2, importFn));
 }
-addDecoder([void 0, 1], () => import("./raw-d3cd6359.js").then((m2) => m2.default));
-addDecoder(5, () => import("./lzw-0762ddb6.js").then((m2) => m2.default));
+addDecoder([void 0, 1], () => import("./raw-829ad888.js").then((m2) => m2.default));
+addDecoder(5, () => import("./lzw-e7ee88d7.js").then((m2) => m2.default));
 addDecoder(6, () => {
   throw new Error("old style JPEG compression is not supported.");
 });
-addDecoder(7, () => import("./jpeg-009f4f5a.js").then((m2) => m2.default));
-addDecoder([8, 32946], () => import("./deflate-9e699c70.js").then((m2) => m2.default));
-addDecoder(32773, () => import("./packbits-89153e95.js").then((m2) => m2.default));
-addDecoder(34887, () => import("./lerc-3a631699.js").then((m2) => m2.default));
-addDecoder(50001, () => import("./webimage-377ed019.js").then((m2) => m2.default));
+addDecoder(7, () => import("./jpeg-e3c6cd06.js").then((m2) => m2.default));
+addDecoder([8, 32946], () => import("./deflate-8db7a1fd.js").then((m2) => m2.default));
+addDecoder(32773, () => import("./packbits-b69fb1e8.js").then((m2) => m2.default));
+addDecoder(34887, () => import("./lerc-d255ce3d.js").then((m2) => m2.default));
+addDecoder(50001, () => import("./webimage-91330202.js").then((m2) => m2.default));
 function decodeRowAcc(row, stride) {
   let length2 = row.length - stride;
   let offset5 = 0;

package/dist/index.js

@@ -1,4 +1,4 @@
-import { E } from "./index-f135e4b2.js";
+import { E } from "./index-b7514fa1.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{jpeg-009f4f5a.js → jpeg-e3c6cd06.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-f135e4b2.js";
+import { B as BaseDecoder } from "./index-b7514fa1.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{lerc-3a631699.js → lerc-d255ce3d.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
-import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-f135e4b2.js";
+import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-b7514fa1.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{lzw-0762ddb6.js → lzw-e7ee88d7.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-f135e4b2.js";
+import { B as BaseDecoder } from "./index-b7514fa1.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{packbits-89153e95.js → packbits-b69fb1e8.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-f135e4b2.js";
+import { B as BaseDecoder } from "./index-b7514fa1.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{raw-d3cd6359.js → raw-829ad888.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-f135e4b2.js";
+import { B as BaseDecoder } from "./index-b7514fa1.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{webimage-377ed019.js → webimage-91330202.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-f135e4b2.js";
+import { B as BaseDecoder } from "./index-b7514fa1.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/scatterplot-embedding",
-  "version": "3.4.11",
+  "version": "3.4.14",
   "author": "Gehlenborg Lab",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -20,12 +20,12 @@
     "d3-array": "^2.4.0",
     "lodash-es": "^4.17.21",
     "react-aria": "^3.28.0",
-    "@vitessce/constants-internal": "3.4.11",
-    "@vitessce/legend": "3.4.11",
-    "@vitessce/scatterplot": "3.4.11",
-    "@vitessce/sets-utils": "3.4.11",
-    "@vitessce/utils": "3.4.11",
-    "@vitessce/vit-s": "3.4.11"
+    "@vitessce/constants-internal": "3.4.14",
+    "@vitessce/legend": "3.4.14",
+    "@vitessce/scatterplot": "3.4.14",
+    "@vitessce/sets-utils": "3.4.14",
+    "@vitessce/utils": "3.4.14",
+    "@vitessce/vit-s": "3.4.14"
   },
   "devDependencies": {
     "react": "^18.0.0",