@vitessce/scatterplot-embedding 3.3.5 → 3.3.7

package/dist/{deflate-ace56a0e.js → deflate-9b4303c6.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
-import { B as BaseDecoder } from "./index-84e77b55.js";
+import { B as BaseDecoder } from "./index-dd2f112e.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{index-84e77b55.js → index-dd2f112e.js}

@@ -4458,8 +4458,9 @@ function getNextScope(prevScopes) {
 }
 const DEFAULT_DARK_COLOR = [50, 50, 50];
 const DEFAULT_LIGHT_COLOR$3 = [200, 200, 200];
+const DEFAULT_LIGHT2_COLOR = [235, 235, 235];
 function getDefaultColor(theme) {
-  return theme === "dark" ? DEFAULT_DARK_COLOR : DEFAULT_LIGHT_COLOR$3;
+  return theme === "dark" ? DEFAULT_DARK_COLOR : theme === "light" ? DEFAULT_LIGHT_COLOR$3 : DEFAULT_LIGHT2_COLOR;
 }
 const PALETTE = [
   [68, 119, 170],
@@ -11023,11 +11024,14 @@ const DataType$2 = {
   GENOMIC_PROFILES: "genomic-profiles",
   OBS_SPOTS: "obsSpots",
   OBS_POINTS: "obsPoints",
-  OBS_LOCATIONS: "obsLocations"
+  OBS_LOCATIONS: "obsLocations",
+  SAMPLE_SETS: "sampleSets",
+  SAMPLE_EDGES: "sampleEdges"
 };
 const FileType$1 = {
   // Joint file types
   ANNDATA_ZARR: "anndata.zarr",
+  ANNDATA_ZARR_ZIP: "anndata.zarr.zip",
   SPATIALDATA_ZARR: "spatialdata.zarr",
   // Atomic file types
   OBS_EMBEDDING_CSV: "obsEmbedding.csv",
@@ -11040,6 +11044,7 @@ const FileType$1 = {
   OBS_SEGMENTATIONS_JSON: "obsSegmentations.json",
   OBS_SETS_CSV: "obsSets.csv",
   OBS_SETS_JSON: "obsSets.json",
+  SAMPLE_SETS_CSV: "sampleSets.csv",
   // OME-Zarr
   IMAGE_OME_ZARR: "image.ome-zarr",
   OBS_SEGMENTATIONS_OME_ZARR: "obsSegmentations.ome-zarr",
@@ -11054,6 +11059,19 @@ const FileType$1 = {
   OBS_SEGMENTATIONS_ANNDATA_ZARR: "obsSegmentations.anndata.zarr",
   OBS_LABELS_ANNDATA_ZARR: "obsLabels.anndata.zarr",
   FEATURE_LABELS_ANNDATA_ZARR: "featureLabels.anndata.zarr",
+  SAMPLE_EDGES_ANNDATA_ZARR: "sampleEdges.anndata.zarr",
+  // AnnData - zipped
+  OBS_FEATURE_MATRIX_ANNDATA_ZARR_ZIP: "obsFeatureMatrix.anndata.zarr.zip",
+  OBS_FEATURE_COLUMNS_ANNDATA_ZARR_ZIP: "obsFeatureColumns.anndata.zarr.zip",
+  OBS_SETS_ANNDATA_ZARR_ZIP: "obsSets.anndata.zarr.zip",
+  OBS_EMBEDDING_ANNDATA_ZARR_ZIP: "obsEmbedding.anndata.zarr.zip",
+  OBS_SPOTS_ANNDATA_ZARR_ZIP: "obsSpots.anndata.zarr.zip",
+  OBS_POINTS_ANNDATA_ZARR_ZIP: "obsPoints.anndata.zarr.zip",
+  OBS_LOCATIONS_ANNDATA_ZARR_ZIP: "obsLocations.anndata.zarr.zip",
+  OBS_SEGMENTATIONS_ANNDATA_ZARR_ZIP: "obsSegmentations.anndata.zarr.zip",
+  OBS_LABELS_ANNDATA_ZARR_ZIP: "obsLabels.anndata.zarr.zip",
+  FEATURE_LABELS_ANNDATA_ZARR_ZIP: "featureLabels.anndata.zarr.zip",
+  SAMPLE_EDGES_ANNDATA_ZARR_ZIP: "sampleEdges.anndata.zarr.zip",
   // SpatialData
   IMAGE_SPATIALDATA_ZARR: "image.spatialdata.zarr",
   LABELS_SPATIALDATA_ZARR: "labels.spatialdata.zarr",
@@ -11061,6 +11079,7 @@ const FileType$1 = {
   OBS_FEATURE_MATRIX_SPATIALDATA_ZARR: "obsFeatureMatrix.spatialdata.zarr",
   OBS_SETS_SPATIALDATA_ZARR: "obsSets.spatialdata.zarr",
   OBS_SPOTS_SPATIALDATA_ZARR: "obsSpots.spatialdata.zarr",
+  FEATURE_LABELS_SPATIALDATA_ZARR: "featureLabels.spatialdata.zarr",
   // TODO:
   // OBS_POINTS_SPATIALDATA_ZARR: 'obsPoints.spatialdata.zarr',
   // OBS_LOCATIONS_SPATIALDATA_ZARR: 'obsLocations.spatialdata.zarr',
@@ -11217,7 +11236,10 @@ const CoordinationType$1 = {
   LEGEND_VISIBLE: "legendVisible",
   SPATIAL_CHANNEL_LABELS_VISIBLE: "spatialChannelLabelsVisible",
   SPATIAL_CHANNEL_LABELS_ORIENTATION: "spatialChannelLabelsOrientation",
-  SPATIAL_CHANNEL_LABEL_SIZE: "spatialChannelLabelSize"
+  SPATIAL_CHANNEL_LABEL_SIZE: "spatialChannelLabelSize",
+  // Multi-sample / comparative
+  SAMPLE_TYPE: "sampleType",
+  SAMPLE_SET_SELECTION: "sampleSetSelection"
 };
 const COMPONENT_COORDINATION_TYPES = {
   [ViewType$1.SCATTERPLOT]: [
@@ -11465,7 +11487,9 @@ const COMPONENT_COORDINATION_TYPES = {
     CoordinationType$1.OBS_SET_SELECTION,
     CoordinationType$1.OBS_SET_HIGHLIGHT,
     CoordinationType$1.OBS_SET_COLOR,
-    CoordinationType$1.ADDITIONAL_OBS_SETS
+    CoordinationType$1.ADDITIONAL_OBS_SETS,
+    CoordinationType$1.SAMPLE_TYPE,
+    CoordinationType$1.SAMPLE_SET_SELECTION
   ],
   [ViewType$1.FEATURE_VALUE_HISTOGRAM]: [
     CoordinationType$1.DATASET,
@@ -11944,6 +11968,17 @@ z.object({
     scoreColumn: z.string().optional()
   }))
 });
+z.object({
+  sampleIndex: z.string(),
+  sampleSets: z.array(z.object({
+    name: z.string(),
+    column: z.union([
+      z.string(),
+      z.array(z.string())
+    ]),
+    scoreColumn: z.string().optional()
+  }))
+});
 z.object({
   obsLabels: z.union([
     annDataObsLabels,
@@ -121316,16 +121351,16 @@ function addDecoder(cases, importFn) {
   }
   cases.forEach((c2) => registry$1.set(c2, importFn));
 }
-addDecoder([void 0, 1], () => import("./raw-0c07377d.js").then((m2) => m2.default));
-addDecoder(5, () => import("./lzw-c9ffecd4.js").then((m2) => m2.default));
+addDecoder([void 0, 1], () => import("./raw-4cbe3f30.js").then((m2) => m2.default));
+addDecoder(5, () => import("./lzw-26eb4bbc.js").then((m2) => m2.default));
 addDecoder(6, () => {
   throw new Error("old style JPEG compression is not supported.");
 });
-addDecoder(7, () => import("./jpeg-be45146d.js").then((m2) => m2.default));
-addDecoder([8, 32946], () => import("./deflate-ace56a0e.js").then((m2) => m2.default));
-addDecoder(32773, () => import("./packbits-53dbd890.js").then((m2) => m2.default));
-addDecoder(34887, () => import("./lerc-9cd3178c.js").then((m2) => m2.default));
-addDecoder(50001, () => import("./webimage-d32ef5d0.js").then((m2) => m2.default));
+addDecoder(7, () => import("./jpeg-090adc7b.js").then((m2) => m2.default));
+addDecoder([8, 32946], () => import("./deflate-9b4303c6.js").then((m2) => m2.default));
+addDecoder(32773, () => import("./packbits-1f898d8f.js").then((m2) => m2.default));
+addDecoder(34887, () => import("./lerc-d85a1773.js").then((m2) => m2.default));
+addDecoder(50001, () => import("./webimage-9ad531da.js").then((m2) => m2.default));
 function decodeRowAcc(row, stride) {
   let length2 = row.length - stride;
   let offset5 = 0;

package/dist/index.js

@@ -1,4 +1,4 @@
-import { E } from "./index-84e77b55.js";
+import { E } from "./index-dd2f112e.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{jpeg-be45146d.js → jpeg-090adc7b.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-84e77b55.js";
+import { B as BaseDecoder } from "./index-dd2f112e.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{lerc-9cd3178c.js → lerc-d85a1773.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
-import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-84e77b55.js";
+import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-dd2f112e.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{lzw-c9ffecd4.js → lzw-26eb4bbc.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-84e77b55.js";
+import { B as BaseDecoder } from "./index-dd2f112e.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{packbits-53dbd890.js → packbits-1f898d8f.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-84e77b55.js";
+import { B as BaseDecoder } from "./index-dd2f112e.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{raw-0c07377d.js → raw-4cbe3f30.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-84e77b55.js";
+import { B as BaseDecoder } from "./index-dd2f112e.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{webimage-d32ef5d0.js → webimage-9ad531da.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-84e77b55.js";
+import { B as BaseDecoder } from "./index-dd2f112e.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/scatterplot-embedding",
-  "version": "3.3.5",
+  "version": "3.3.7",
   "author": "Gehlenborg Lab",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -20,12 +20,12 @@
     "d3-array": "^2.4.0",
     "lodash-es": "^4.17.21",
     "react-aria": "^3.28.0",
-    "@vitessce/constants-internal": "3.3.5",
-    "@vitessce/scatterplot": "3.3.5",
-    "@vitessce/legend": "3.3.5",
-    "@vitessce/sets-utils": "3.3.5",
-    "@vitessce/utils": "3.3.5",
-    "@vitessce/vit-s": "3.3.5"
+    "@vitessce/legend": "3.3.7",
+    "@vitessce/constants-internal": "3.3.7",
+    "@vitessce/sets-utils": "3.3.7",
+    "@vitessce/utils": "3.3.7",
+    "@vitessce/scatterplot": "3.3.7",
+    "@vitessce/vit-s": "3.3.7"
   },
   "devDependencies": {
     "react": "^18.0.0",