@vitessce/scatterplot-embedding 3.2.2 → 3.3.0

package/dist/{deflate-49eb8bd8.js → deflate-bd431815.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
-import { B as BaseDecoder } from "./index-c4323615.js";
+import { B as BaseDecoder } from "./index-87e09f29.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{index-c4323615.js → index-87e09f29.js}

@@ -4462,9 +4462,9 @@ const schemePlasma = [[13, 8, 135], [16, 7, 136], [19, 7, 137], [22, 7, 138], [2
 function rgbSpline(spline) {
   return (colors) => {
     const n2 = colors.length;
-    let r2 = new Array(n2);
-    let g2 = new Array(n2);
-    let b = new Array(n2);
+    const r2 = new Array(n2);
+    const g2 = new Array(n2);
+    const b = new Array(n2);
     let i2;
     let color2;
     for (i2 = 0; i2 < n2; ++i2) {
@@ -4473,10 +4473,10 @@ function rgbSpline(spline) {
       g2[i2] = color2[1] || 0;
       b[i2] = color2[2] || 0;
     }
-    r2 = spline(r2);
-    g2 = spline(g2);
-    b = spline(b);
-    return (t2) => [r2(t2), g2(t2), b(t2)];
+    const rFunc = spline(r2);
+    const gFunc = spline(g2);
+    const bFunc = spline(b);
+    return (t2) => [rFunc(t2), gFunc(t2), bFunc(t2)];
   };
 }
 function basis(values2) {
@@ -11068,6 +11068,7 @@ const DataType$2 = {
 const FileType$1 = {
   // Joint file types
   ANNDATA_ZARR: "anndata.zarr",
+  SPATIALDATA_ZARR: "spatialdata.zarr",
   // Atomic file types
   OBS_EMBEDDING_CSV: "obsEmbedding.csv",
   OBS_SPOTS_CSV: "obsSpots.csv",
@@ -11090,6 +11091,16 @@ const FileType$1 = {
   OBS_SEGMENTATIONS_ANNDATA_ZARR: "obsSegmentations.anndata.zarr",
   OBS_LABELS_ANNDATA_ZARR: "obsLabels.anndata.zarr",
   FEATURE_LABELS_ANNDATA_ZARR: "featureLabels.anndata.zarr",
+  // SpatialData
+  IMAGE_SPATIALDATA_ZARR: "image.spatialdata.zarr",
+  LABELS_SPATIALDATA_ZARR: "labels.spatialdata.zarr",
+  SHAPES_SPATIALDATA_ZARR: "shapes.spatialdata.zarr",
+  OBS_FEATURE_MATRIX_SPATIALDATA_ZARR: "obsFeatureMatrix.spatialdata.zarr",
+  OBS_SETS_SPATIALDATA_ZARR: "obsSets.spatialdata.zarr",
+  OBS_SPOTS_SPATIALDATA_ZARR: "obsSpots.spatialdata.zarr",
+  // TODO:
+  // OBS_POINTS_SPATIALDATA_ZARR: 'obsPoints.spatialdata.zarr',
+  // OBS_LOCATIONS_SPATIALDATA_ZARR: 'obsLocations.spatialdata.zarr',
   // MuData
   OBS_FEATURE_MATRIX_MUDATA_ZARR: "obsFeatureMatrix.mudata.zarr",
   OBS_SETS_MUDATA_ZARR: "obsSets.mudata.zarr",
@@ -11891,9 +11902,30 @@ z.object({
   offsetsUrl: z.string().optional(),
   coordinateTransformations: omeCoordinateTransformations.optional()
 });
-z.object({
+const imageOmeZarrSchema = z.object({
   coordinateTransformations: omeCoordinateTransformations.optional()
 });
+imageOmeZarrSchema.extend({
+  path: z.string()
+});
+z.object({
+  path: z.string()
+});
+z.object({
+  path: z.string()
+});
+z.object({
+  path: z.string(),
+  tablePath: z.string().optional().describe("The path to a table which annotates the spots. If available but not specified, the spot identifiers may not be aligned with associated tabular data as expected.")
+});
+annDataObsFeatureMatrix.extend({
+  region: z.string().describe("The name of a region to use to filter instances (i.e., rows) in the table").optional()
+});
+z.object({
+  region: z.string().describe("The name of a region to use to filter instances (i.e., rows) in the table").optional(),
+  tablePath: z.string().optional().describe("The path to a table which contains the index for the set values."),
+  obsSets: annDataObsSets
+});
 z.object({
   obsIndex: z.string(),
   obsEmbedding: z.array(z.string()).length(2)
@@ -121180,16 +121212,16 @@ function addDecoder(cases, importFn) {
   }
   cases.forEach((c2) => registry$1.set(c2, importFn));
 }
-addDecoder([void 0, 1], () => import("./raw-562e7d1c.js").then((m2) => m2.default));
-addDecoder(5, () => import("./lzw-0659de0e.js").then((m2) => m2.default));
+addDecoder([void 0, 1], () => import("./raw-12234337.js").then((m2) => m2.default));
+addDecoder(5, () => import("./lzw-9f579219.js").then((m2) => m2.default));
 addDecoder(6, () => {
   throw new Error("old style JPEG compression is not supported.");
 });
-addDecoder(7, () => import("./jpeg-0c6f4d5b.js").then((m2) => m2.default));
-addDecoder([8, 32946], () => import("./deflate-49eb8bd8.js").then((m2) => m2.default));
-addDecoder(32773, () => import("./packbits-f0484b5e.js").then((m2) => m2.default));
-addDecoder(34887, () => import("./lerc-157806a7.js").then((m2) => m2.default));
-addDecoder(50001, () => import("./webimage-ab07cd7f.js").then((m2) => m2.default));
+addDecoder(7, () => import("./jpeg-418390c5.js").then((m2) => m2.default));
+addDecoder([8, 32946], () => import("./deflate-bd431815.js").then((m2) => m2.default));
+addDecoder(32773, () => import("./packbits-81f5fada.js").then((m2) => m2.default));
+addDecoder(34887, () => import("./lerc-f1c20446.js").then((m2) => m2.default));
+addDecoder(50001, () => import("./webimage-6ef04827.js").then((m2) => m2.default));
 function decodeRowAcc(row, stride) {
   let length2 = row.length - stride;
   let offset5 = 0;
@@ -145530,9 +145562,9 @@ function Legend(props2) {
     const hasSubLabel = subLabel !== null;
     if (!isSetColor) {
       g2.append("text").attr("text-anchor", hasSubLabel ? "start" : "end").attr("dominant-baseline", "hanging").attr("x", hasSubLabel ? 0 : width).attr("y", 0).text(mainLabel).style("font-size", "10px").style("fill", foregroundColor);
-    }
-    if (hasSubLabel) {
-      g2.append("text").attr("text-anchor", "end").attr("dominant-baseline", "hanging").attr("x", width).attr("y", titleHeight).text(subLabel).style("font-size", "9px").style("fill", foregroundColor);
+      if (hasSubLabel) {
+        g2.append("text").attr("text-anchor", "end").attr("dominant-baseline", "hanging").attr("x", width).attr("y", titleHeight).text(subLabel).style("font-size", "9px").style("fill", foregroundColor);
+      }
     }
   }, [
     width,

package/dist/index.js

@@ -1,4 +1,4 @@
-import { E } from "./index-c4323615.js";
+import { E } from "./index-87e09f29.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{jpeg-0c6f4d5b.js → jpeg-418390c5.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-c4323615.js";
+import { B as BaseDecoder } from "./index-87e09f29.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{lerc-157806a7.js → lerc-f1c20446.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
-import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-c4323615.js";
+import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-87e09f29.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{lzw-0659de0e.js → lzw-9f579219.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-c4323615.js";
+import { B as BaseDecoder } from "./index-87e09f29.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{packbits-f0484b5e.js → packbits-81f5fada.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-c4323615.js";
+import { B as BaseDecoder } from "./index-87e09f29.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{raw-562e7d1c.js → raw-12234337.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-c4323615.js";
+import { B as BaseDecoder } from "./index-87e09f29.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{webimage-ab07cd7f.js → webimage-6ef04827.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-c4323615.js";
+import { B as BaseDecoder } from "./index-87e09f29.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/scatterplot-embedding",
-  "version": "3.2.2",
+  "version": "3.3.0",
   "author": "Gehlenborg Lab",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -20,12 +20,12 @@
     "d3-array": "^2.4.0",
     "lodash-es": "^4.17.21",
     "react-aria": "^3.28.0",
-    "@vitessce/constants-internal": "3.2.2",
-    "@vitessce/legend": "3.2.2",
-    "@vitessce/scatterplot": "3.2.2",
-    "@vitessce/sets-utils": "3.2.2",
-    "@vitessce/utils": "3.2.2",
-    "@vitessce/vit-s": "3.2.2"
+    "@vitessce/constants-internal": "3.3.0",
+    "@vitessce/legend": "3.3.0",
+    "@vitessce/scatterplot": "3.3.0",
+    "@vitessce/sets-utils": "3.3.0",
+    "@vitessce/utils": "3.3.0",
+    "@vitessce/vit-s": "3.3.0"
   },
   "devDependencies": {
     "react": "^18.0.0",