@vitessce/neuroglancer 3.6.3 → 3.6.5

package/dist/{ReactNeuroglancer-DBBOgJbb.js → ReactNeuroglancer-CLniI-yW.js}

@@ -1,5 +1,5 @@
 import React__default from "react";
-import { g as getDefaultExportFromCjs, c as commonjsGlobal, a as getAugmentedNamespace, r as requirePropTypes } from "./index-B3uD4mJg.js";
+import { g as getDefaultExportFromCjs, c as commonjsGlobal, a as getAugmentedNamespace, r as requirePropTypes } from "./index-DwxOxniV.js";
 var lib = {};
 var es6_object_assign = {};
 var _global = { exports: {} };

package/dist/{index-B3uD4mJg.js → index-DwxOxniV.js}

@@ -58,6 +58,7 @@ const FileType$1 = {
   ANNDATA_ZARR_ZIP: "anndata.zarr.zip",
   ANNDATA_H5AD: "anndata.h5ad",
   SPATIALDATA_ZARR: "spatialdata.zarr",
+  SPATIALDATA_ZARR_ZIP: "spatialdata.zarr.zip",
   // Atomic file types
   OBS_EMBEDDING_CSV: "obsEmbedding.csv",
   OBS_SPOTS_CSV: "obsSpots.csv",
@@ -138,6 +139,14 @@ const FileType$1 = {
   // TODO:
   // OBS_POINTS_SPATIALDATA_ZARR: 'obsPoints.spatialdata.zarr',
   // OBS_LOCATIONS_SPATIALDATA_ZARR: 'obsLocations.spatialdata.zarr',
+  // SpatialData - zipped
+  IMAGE_SPATIALDATA_ZARR_ZIP: "image.spatialdata.zarr.zip",
+  LABELS_SPATIALDATA_ZARR_ZIP: "labels.spatialdata.zarr.zip",
+  SHAPES_SPATIALDATA_ZARR_ZIP: "shapes.spatialdata.zarr.zip",
+  OBS_FEATURE_MATRIX_SPATIALDATA_ZARR_ZIP: "obsFeatureMatrix.spatialdata.zarr.zip",
+  OBS_SETS_SPATIALDATA_ZARR_ZIP: "obsSets.spatialdata.zarr.zip",
+  OBS_SPOTS_SPATIALDATA_ZARR_ZIP: "obsSpots.spatialdata.zarr.zip",
+  FEATURE_LABELS_SPATIALDATA_ZARR_ZIP: "featureLabels.spatialdata.zarr.zip",
   // MuData
   OBS_FEATURE_MATRIX_MUDATA_ZARR: "obsFeatureMatrix.mudata.zarr",
   OBS_SETS_MUDATA_ZARR: "obsSets.mudata.zarr",
@@ -538,6 +547,28 @@ const ViewHelpMapping = {
   },
   [FileType$1.OBS_SEGMENTATIONS_OME_ZARR]: {
     zip: FileType$1.OBS_SEGMENTATIONS_OME_ZARR_ZIP
+  },
+  // For SpatialData:
+  [FileType$1.IMAGE_SPATIALDATA_ZARR]: {
+    zip: FileType$1.IMAGE_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.LABELS_SPATIALDATA_ZARR]: {
+    zip: FileType$1.LABELS_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.SHAPES_SPATIALDATA_ZARR]: {
+    zip: FileType$1.SHAPES_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR]: {
+    zip: FileType$1.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.OBS_SETS_SPATIALDATA_ZARR]: {
+    zip: FileType$1.OBS_SETS_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.OBS_SPOTS_SPATIALDATA_ZARR]: {
+    zip: FileType$1.OBS_SPOTS_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.FEATURE_LABELS_SPATIALDATA_ZARR]: {
+    zip: FileType$1.FEATURE_LABELS_SPATIALDATA_ZARR_ZIP
   }
 });
 [
@@ -10647,6 +10678,7 @@ const anndataZarrSchema = z.object({
     z.array(annDataConvenienceFeatureLabelsItem)
   ]),
   obsFeatureMatrix: annDataObsFeatureMatrix,
+  obsFeatureColumns: annDataObsFeatureColumnsArr,
   obsSets: annDataObsSetsArr,
   obsSpots: annDataObsSpots,
   obsPoints: annDataObsPoints,
@@ -10664,12 +10696,17 @@ anndataZarrSchema.extend({
 z.object({
   // TODO: should `image` be a special schema
   // to allow specifying fileUid (like for embeddingType)?
-  // TODO: allow multiple images
+  // TODO: allow multiple images?
   image: imageSpatialdataSchema,
   // TODO: should this be a special schema
   // to allow specifying fileUid (like for embeddingType)?
-  // TODO: allow multiple labels
+  // TODO: allow multiple labels?
   labels: obsSegmentationsSpatialdataSchema,
+  // TODO: allow multiple shapes?
+  // TODO: unify labels and shapes to obsSegmentations,
+  // then distinguish in expand function based on
+  // "labels/*" vs. "shapes/*" in path?
+  shapes: obsSegmentationsSpatialdataSchema,
   obsFeatureMatrix: obsFeatureMatrixSpatialdataSchema,
   obsSpots: obsSpotsSpatialdataSchema,
   // TODO: obsPoints
@@ -28319,7 +28356,7 @@ function NeuroglancerGlobalStyles(props) {
     }
   ));
 }
-const LazyReactNeuroglancer = React__default.lazy(() => import("./ReactNeuroglancer-DBBOgJbb.js"));
+const LazyReactNeuroglancer = React__default.lazy(() => import("./ReactNeuroglancer-CLniI-yW.js"));
 function createWorker() {
   return new WorkerFactory();
 }

package/dist/index.js

@@ -1,4 +1,4 @@
-import { N } from "./index-B3uD4mJg.js";
+import { N } from "./index-DwxOxniV.js";
 export {
   N as NeuroglancerSubscriber
 };

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/neuroglancer",
-  "version": "3.6.3",
+  "version": "3.6.5",
   "author": "Gehlenborg Lab",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -19,13 +19,13 @@
     "@janelia-flyem/react-neuroglancer": "2.5.0",
     "@janelia-flyem/neuroglancer": "2.37.5",
     "lodash-es": "^4.17.21",
-    "@vitessce/neuroglancer-workers": "3.6.3",
-    "@vitessce/styles": "3.6.3",
-    "@vitessce/constants-internal": "3.6.3",
-    "@vitessce/vit-s": "3.6.3",
-    "@vitessce/sets-utils": "3.6.3",
-    "@vitessce/utils": "3.6.3",
-    "@vitessce/tooltip": "3.6.3"
+    "@vitessce/neuroglancer-workers": "3.6.5",
+    "@vitessce/styles": "3.6.5",
+    "@vitessce/constants-internal": "3.6.5",
+    "@vitessce/vit-s": "3.6.5",
+    "@vitessce/sets-utils": "3.6.5",
+    "@vitessce/utils": "3.6.5",
+    "@vitessce/tooltip": "3.6.5"
   },
   "devDependencies": {
     "@testing-library/jest-dom": "^6.6.3",