@vitessce/heatmap 3.3.5 → 3.3.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -1,5 +1,5 @@
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  import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
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- import { B as BaseDecoder } from "./index-dd20d252.js";
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+ import { B as BaseDecoder } from "./index-c4ad73b8.js";
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  import "react";
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  import "@vitessce/vit-s";
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  import "react-dom";
@@ -1346,8 +1346,9 @@ function getNextScope(prevScopes) {
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  }
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  const DEFAULT_DARK_COLOR = [50, 50, 50];
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  const DEFAULT_LIGHT_COLOR$3 = [200, 200, 200];
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+ const DEFAULT_LIGHT2_COLOR = [235, 235, 235];
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  function getDefaultColor(theme) {
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- return theme === "dark" ? DEFAULT_DARK_COLOR : DEFAULT_LIGHT_COLOR$3;
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+ return theme === "dark" ? DEFAULT_DARK_COLOR : theme === "light" ? DEFAULT_LIGHT_COLOR$3 : DEFAULT_LIGHT2_COLOR;
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  }
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  const DEFAULT_GL_OPTIONS = { webgl2: true };
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  function createDefaultUpdateCellsHover(componentName) {
@@ -10914,11 +10915,14 @@ const DataType$2 = {
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  GENOMIC_PROFILES: "genomic-profiles",
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  OBS_SPOTS: "obsSpots",
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  OBS_POINTS: "obsPoints",
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- OBS_LOCATIONS: "obsLocations"
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+ OBS_LOCATIONS: "obsLocations",
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+ SAMPLE_SETS: "sampleSets",
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+ SAMPLE_EDGES: "sampleEdges"
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  };
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  const FileType$1 = {
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  // Joint file types
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  ANNDATA_ZARR: "anndata.zarr",
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+ ANNDATA_ZARR_ZIP: "anndata.zarr.zip",
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  SPATIALDATA_ZARR: "spatialdata.zarr",
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  // Atomic file types
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  OBS_EMBEDDING_CSV: "obsEmbedding.csv",
@@ -10931,6 +10935,7 @@ const FileType$1 = {
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  OBS_SEGMENTATIONS_JSON: "obsSegmentations.json",
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  OBS_SETS_CSV: "obsSets.csv",
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  OBS_SETS_JSON: "obsSets.json",
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+ SAMPLE_SETS_CSV: "sampleSets.csv",
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  // OME-Zarr
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  IMAGE_OME_ZARR: "image.ome-zarr",
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  OBS_SEGMENTATIONS_OME_ZARR: "obsSegmentations.ome-zarr",
@@ -10945,6 +10950,19 @@ const FileType$1 = {
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  OBS_SEGMENTATIONS_ANNDATA_ZARR: "obsSegmentations.anndata.zarr",
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  OBS_LABELS_ANNDATA_ZARR: "obsLabels.anndata.zarr",
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  FEATURE_LABELS_ANNDATA_ZARR: "featureLabels.anndata.zarr",
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+ SAMPLE_EDGES_ANNDATA_ZARR: "sampleEdges.anndata.zarr",
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+ // AnnData - zipped
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+ OBS_FEATURE_MATRIX_ANNDATA_ZARR_ZIP: "obsFeatureMatrix.anndata.zarr.zip",
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+ OBS_FEATURE_COLUMNS_ANNDATA_ZARR_ZIP: "obsFeatureColumns.anndata.zarr.zip",
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+ OBS_SETS_ANNDATA_ZARR_ZIP: "obsSets.anndata.zarr.zip",
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+ OBS_EMBEDDING_ANNDATA_ZARR_ZIP: "obsEmbedding.anndata.zarr.zip",
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+ OBS_SPOTS_ANNDATA_ZARR_ZIP: "obsSpots.anndata.zarr.zip",
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+ OBS_POINTS_ANNDATA_ZARR_ZIP: "obsPoints.anndata.zarr.zip",
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+ OBS_LOCATIONS_ANNDATA_ZARR_ZIP: "obsLocations.anndata.zarr.zip",
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+ OBS_SEGMENTATIONS_ANNDATA_ZARR_ZIP: "obsSegmentations.anndata.zarr.zip",
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+ OBS_LABELS_ANNDATA_ZARR_ZIP: "obsLabels.anndata.zarr.zip",
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+ FEATURE_LABELS_ANNDATA_ZARR_ZIP: "featureLabels.anndata.zarr.zip",
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+ SAMPLE_EDGES_ANNDATA_ZARR_ZIP: "sampleEdges.anndata.zarr.zip",
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  // SpatialData
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  IMAGE_SPATIALDATA_ZARR: "image.spatialdata.zarr",
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  LABELS_SPATIALDATA_ZARR: "labels.spatialdata.zarr",
@@ -10952,6 +10970,7 @@ const FileType$1 = {
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  OBS_FEATURE_MATRIX_SPATIALDATA_ZARR: "obsFeatureMatrix.spatialdata.zarr",
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  OBS_SETS_SPATIALDATA_ZARR: "obsSets.spatialdata.zarr",
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  OBS_SPOTS_SPATIALDATA_ZARR: "obsSpots.spatialdata.zarr",
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+ FEATURE_LABELS_SPATIALDATA_ZARR: "featureLabels.spatialdata.zarr",
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  // TODO:
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  // OBS_POINTS_SPATIALDATA_ZARR: 'obsPoints.spatialdata.zarr',
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  // OBS_LOCATIONS_SPATIALDATA_ZARR: 'obsLocations.spatialdata.zarr',
@@ -11108,7 +11127,10 @@ const CoordinationType$1 = {
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  LEGEND_VISIBLE: "legendVisible",
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  SPATIAL_CHANNEL_LABELS_VISIBLE: "spatialChannelLabelsVisible",
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  SPATIAL_CHANNEL_LABELS_ORIENTATION: "spatialChannelLabelsOrientation",
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- SPATIAL_CHANNEL_LABEL_SIZE: "spatialChannelLabelSize"
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+ SPATIAL_CHANNEL_LABEL_SIZE: "spatialChannelLabelSize",
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+ // Multi-sample / comparative
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+ SAMPLE_TYPE: "sampleType",
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+ SAMPLE_SET_SELECTION: "sampleSetSelection"
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  };
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  const COMPONENT_COORDINATION_TYPES = {
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  [ViewType$1.SCATTERPLOT]: [
@@ -11356,7 +11378,9 @@ const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType$1.OBS_SET_SELECTION,
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  CoordinationType$1.OBS_SET_HIGHLIGHT,
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  CoordinationType$1.OBS_SET_COLOR,
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- CoordinationType$1.ADDITIONAL_OBS_SETS
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+ CoordinationType$1.ADDITIONAL_OBS_SETS,
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+ CoordinationType$1.SAMPLE_TYPE,
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+ CoordinationType$1.SAMPLE_SET_SELECTION
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  ],
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  [ViewType$1.FEATURE_VALUE_HISTOGRAM]: [
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  CoordinationType$1.DATASET,
@@ -11835,6 +11859,17 @@ z.object({
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  scoreColumn: z.string().optional()
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  }))
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  });
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+ z.object({
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+ sampleIndex: z.string(),
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+ sampleSets: z.array(z.object({
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+ name: z.string(),
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+ column: z.union([
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+ z.string(),
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+ z.array(z.string())
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+ ]),
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+ scoreColumn: z.string().optional()
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+ }))
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+ });
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  z.object({
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  obsLabels: z.union([
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  annDataObsLabels,
@@ -132647,16 +132682,16 @@ function addDecoder(cases, importFn) {
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  }
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  cases.forEach((c) => registry$1.set(c, importFn));
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  }
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- addDecoder([void 0, 1], () => import("./raw-b95711bc.js").then((m) => m.default));
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- addDecoder(5, () => import("./lzw-c47337be.js").then((m) => m.default));
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+ addDecoder([void 0, 1], () => import("./raw-73c6e451.js").then((m) => m.default));
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+ addDecoder(5, () => import("./lzw-924f5d1f.js").then((m) => m.default));
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  addDecoder(6, () => {
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  throw new Error("old style JPEG compression is not supported.");
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  });
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- addDecoder(7, () => import("./jpeg-329d0b25.js").then((m) => m.default));
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- addDecoder([8, 32946], () => import("./deflate-e18d403c.js").then((m) => m.default));
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- addDecoder(32773, () => import("./packbits-4373d6cf.js").then((m) => m.default));
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- addDecoder(34887, () => import("./lerc-497104ea.js").then((m) => m.default));
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- addDecoder(50001, () => import("./webimage-85278526.js").then((m) => m.default));
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+ addDecoder(7, () => import("./jpeg-28dd50f3.js").then((m) => m.default));
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+ addDecoder([8, 32946], () => import("./deflate-75c74002.js").then((m) => m.default));
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+ addDecoder(32773, () => import("./packbits-9d1372b3.js").then((m) => m.default));
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+ addDecoder(34887, () => import("./lerc-13f7a96a.js").then((m) => m.default));
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+ addDecoder(50001, () => import("./webimage-d888986b.js").then((m) => m.default));
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  function decodeRowAcc(row, stride) {
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  let length2 = row.length - stride;
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  let offset5 = 0;
package/dist/index.js CHANGED
@@ -1,4 +1,4 @@
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- import { a, H } from "./index-dd20d252.js";
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+ import { a, H } from "./index-c4ad73b8.js";
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  import "react";
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  import "@vitessce/vit-s";
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  import "react-dom";
@@ -1,4 +1,4 @@
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- import { B as BaseDecoder } from "./index-dd20d252.js";
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+ import { B as BaseDecoder } from "./index-c4ad73b8.js";
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  import "react";
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  import "@vitessce/vit-s";
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  import "react-dom";
@@ -1,5 +1,5 @@
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  import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
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- import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-dd20d252.js";
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+ import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-c4ad73b8.js";
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  import "react";
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  import "@vitessce/vit-s";
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  import "react-dom";
@@ -1,4 +1,4 @@
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- import { B as BaseDecoder } from "./index-dd20d252.js";
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+ import { B as BaseDecoder } from "./index-c4ad73b8.js";
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  import "react";
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  import "@vitessce/vit-s";
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  import "react-dom";
@@ -1,4 +1,4 @@
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- import { B as BaseDecoder } from "./index-dd20d252.js";
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+ import { B as BaseDecoder } from "./index-c4ad73b8.js";
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  import "react";
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  import "@vitessce/vit-s";
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  import "react-dom";
@@ -1,4 +1,4 @@
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- import { B as BaseDecoder } from "./index-dd20d252.js";
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+ import { B as BaseDecoder } from "./index-c4ad73b8.js";
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  import "react";
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  import "@vitessce/vit-s";
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  import "react-dom";
@@ -1,4 +1,4 @@
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- import { B as BaseDecoder } from "./index-dd20d252.js";
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+ import { B as BaseDecoder } from "./index-c4ad73b8.js";
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  import "react";
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  import "@vitessce/vit-s";
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  import "react-dom";
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@vitessce/heatmap",
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- "version": "3.3.5",
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+ "version": "3.3.7",
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  "author": "Gehlenborg Lab",
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  "homepage": "http://vitessce.io",
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  "repository": {
@@ -20,14 +20,14 @@
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  "lodash-es": "^4.17.21",
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  "uuid": "^9.0.0",
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  "react-aria": "^3.28.0",
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- "@vitessce/constants-internal": "3.3.5",
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- "@vitessce/gl": "3.3.5",
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- "@vitessce/legend": "3.3.5",
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- "@vitessce/tooltip": "3.3.5",
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- "@vitessce/sets-utils": "3.3.5",
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- "@vitessce/utils": "3.3.5",
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- "@vitessce/vit-s": "3.3.5",
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- "@vitessce/workers": "3.3.5"
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+ "@vitessce/constants-internal": "3.3.7",
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+ "@vitessce/gl": "3.3.7",
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+ "@vitessce/legend": "3.3.7",
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+ "@vitessce/tooltip": "3.3.7",
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+ "@vitessce/sets-utils": "3.3.7",
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+ "@vitessce/utils": "3.3.7",
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+ "@vitessce/workers": "3.3.7",
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+ "@vitessce/vit-s": "3.3.7"
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  },
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  "devDependencies": {
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  "@testing-library/jest-dom": "^5.16.4",