@vitessce/heatmap 3.2.2 → 3.3.0

package/dist/{deflate-54e8a983.js → deflate-3d857d4d.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
-import { B as BaseDecoder } from "./index-99684608.js";
+import { B as BaseDecoder } from "./index-3c0e8e85.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{index-99684608.js → index-3c0e8e85.js}

@@ -1,3 +1,9 @@
+var __defProp = Object.defineProperty;
+var __defNormalProp = (obj, key, value) => key in obj ? __defProp(obj, key, { enumerable: true, configurable: true, writable: true, value }) : obj[key] = value;
+var __publicField = (obj, key, value) => {
+  __defNormalProp(obj, typeof key !== "symbol" ? key + "" : key, value);
+  return value;
+};
 import * as React from "react";
 import React__default, { Children, isValidElement, cloneElement, useRef, useMemo, useEffect, useLayoutEffect, createElement, forwardRef, useState, useImperativeHandle, useReducer, useCallback, useContext } from "react";
 import { useVitessceContainer, useComponentHover, useComponentViewInfo, usePlotOptionsStyles, OptionsContainer, OptionSelect, useLoaders, useSetComponentHover, useSetComponentViewInfo, useCoordination, useDeckCanvasSize, useMultiObsLabels, useFeatureLabelsData, useObsFeatureMatrixData, useObsSetsData, useReady, useUrls, useUint8ObsFeatureMatrix, useGetObsInfo, useGetObsMembership, TitleInfo } from "@vitessce/vit-s";
@@ -10867,6 +10873,7 @@ const DataType$2 = {
 const FileType$1 = {
   // Joint file types
   ANNDATA_ZARR: "anndata.zarr",
+  SPATIALDATA_ZARR: "spatialdata.zarr",
   // Atomic file types
   OBS_EMBEDDING_CSV: "obsEmbedding.csv",
   OBS_SPOTS_CSV: "obsSpots.csv",
@@ -10889,6 +10896,16 @@ const FileType$1 = {
   OBS_SEGMENTATIONS_ANNDATA_ZARR: "obsSegmentations.anndata.zarr",
   OBS_LABELS_ANNDATA_ZARR: "obsLabels.anndata.zarr",
   FEATURE_LABELS_ANNDATA_ZARR: "featureLabels.anndata.zarr",
+  // SpatialData
+  IMAGE_SPATIALDATA_ZARR: "image.spatialdata.zarr",
+  LABELS_SPATIALDATA_ZARR: "labels.spatialdata.zarr",
+  SHAPES_SPATIALDATA_ZARR: "shapes.spatialdata.zarr",
+  OBS_FEATURE_MATRIX_SPATIALDATA_ZARR: "obsFeatureMatrix.spatialdata.zarr",
+  OBS_SETS_SPATIALDATA_ZARR: "obsSets.spatialdata.zarr",
+  OBS_SPOTS_SPATIALDATA_ZARR: "obsSpots.spatialdata.zarr",
+  // TODO:
+  // OBS_POINTS_SPATIALDATA_ZARR: 'obsPoints.spatialdata.zarr',
+  // OBS_LOCATIONS_SPATIALDATA_ZARR: 'obsLocations.spatialdata.zarr',
   // MuData
   OBS_FEATURE_MATRIX_MUDATA_ZARR: "obsFeatureMatrix.mudata.zarr",
   OBS_SETS_MUDATA_ZARR: "obsSets.mudata.zarr",
@@ -11690,9 +11707,30 @@ z.object({
   offsetsUrl: z.string().optional(),
   coordinateTransformations: omeCoordinateTransformations.optional()
 });
-z.object({
+const imageOmeZarrSchema = z.object({
   coordinateTransformations: omeCoordinateTransformations.optional()
 });
+imageOmeZarrSchema.extend({
+  path: z.string()
+});
+z.object({
+  path: z.string()
+});
+z.object({
+  path: z.string()
+});
+z.object({
+  path: z.string(),
+  tablePath: z.string().optional().describe("The path to a table which annotates the spots. If available but not specified, the spot identifiers may not be aligned with associated tabular data as expected.")
+});
+annDataObsFeatureMatrix.extend({
+  region: z.string().describe("The name of a region to use to filter instances (i.e., rows) in the table").optional()
+});
+z.object({
+  region: z.string().describe("The name of a region to use to filter instances (i.e., rows) in the table").optional(),
+  tablePath: z.string().optional().describe("The path to a table which contains the index for the set values."),
+  obsSets: annDataObsSets
+});
 z.object({
   obsIndex: z.string(),
   obsEmbedding: z.array(z.string()).length(2)
@@ -18354,9 +18392,9 @@ const schemePlasma = [[13, 8, 135], [16, 7, 136], [19, 7, 137], [22, 7, 138], [2
 function rgbSpline(spline) {
   return (colors) => {
     const n2 = colors.length;
-    let r2 = new Array(n2);
-    let g2 = new Array(n2);
-    let b = new Array(n2);
+    const r2 = new Array(n2);
+    const g2 = new Array(n2);
+    const b = new Array(n2);
     let i2;
     let color2;
     for (i2 = 0; i2 < n2; ++i2) {
@@ -18365,10 +18403,10 @@ function rgbSpline(spline) {
       g2[i2] = color2[1] || 0;
       b[i2] = color2[2] || 0;
     }
-    r2 = spline(r2);
-    g2 = spline(g2);
-    b = spline(b);
-    return (t2) => [r2(t2), g2(t2), b(t2)];
+    const rFunc = spline(r2);
+    const gFunc = spline(g2);
+    const bFunc = spline(b);
+    return (t2) => [rFunc(t2), gFunc(t2), bFunc(t2)];
   };
 }
 function basis(values2) {
@@ -18404,17 +18442,19 @@ function getCellColors(params) {
   }
   return /* @__PURE__ */ new Map();
 }
-const defaultPoolSize = typeof navigator !== "undefined" ? navigator.hardwareConcurrency || 4 : null;
+const defaultPoolSize = typeof navigator !== "undefined" ? navigator.hardwareConcurrency || 4 : 1;
 class Pool {
   /**
    * @constructor
    * @param {object} Worker The worker class to be used for processing.
    */
   constructor(createWorker2) {
+    __publicField(this, "workers");
+    __publicField(this, "idleWorkers");
+    __publicField(this, "waitQueue");
     this.workers = [];
     this.idleWorkers = [];
     this.waitQueue = [];
-    this.decoder = null;
     for (let i2 = 0; i2 < defaultPoolSize; ++i2) {
       const w2 = createWorker2();
       this.workers.push(w2);
@@ -18439,7 +18479,7 @@ class Pool {
   }
   async finishTask(currentWorker) {
     const waiter = this.waitQueue.pop();
-    if (waiter) {
+    if (waiter && waiter.resolve) {
       waiter.resolve(currentWorker);
     } else {
       this.idleWorkers.push(currentWorker);
@@ -30597,9 +30637,9 @@ function Legend(props2) {
     const hasSubLabel = subLabel !== null;
     if (!isSetColor) {
       g2.append("text").attr("text-anchor", hasSubLabel ? "start" : "end").attr("dominant-baseline", "hanging").attr("x", hasSubLabel ? 0 : width).attr("y", 0).text(mainLabel).style("font-size", "10px").style("fill", foregroundColor);
-    }
-    if (hasSubLabel) {
-      g2.append("text").attr("text-anchor", "end").attr("dominant-baseline", "hanging").attr("x", width).attr("y", titleHeight).text(subLabel).style("font-size", "9px").style("fill", foregroundColor);
+      if (hasSubLabel) {
+        g2.append("text").attr("text-anchor", "end").attr("dominant-baseline", "hanging").attr("x", width).attr("y", titleHeight).text(subLabel).style("font-size", "9px").style("fill", foregroundColor);
+      }
     }
   }, [
     width,
@@ -132521,16 +132561,16 @@ function addDecoder(cases, importFn) {
   }
   cases.forEach((c) => registry$1.set(c, importFn));
 }
-addDecoder([void 0, 1], () => import("./raw-ed466def.js").then((m) => m.default));
-addDecoder(5, () => import("./lzw-dcec678f.js").then((m) => m.default));
+addDecoder([void 0, 1], () => import("./raw-7b8f8ab9.js").then((m) => m.default));
+addDecoder(5, () => import("./lzw-72ff5da2.js").then((m) => m.default));
 addDecoder(6, () => {
   throw new Error("old style JPEG compression is not supported.");
 });
-addDecoder(7, () => import("./jpeg-91201fe5.js").then((m) => m.default));
-addDecoder([8, 32946], () => import("./deflate-54e8a983.js").then((m) => m.default));
-addDecoder(32773, () => import("./packbits-1f0b4f8a.js").then((m) => m.default));
-addDecoder(34887, () => import("./lerc-ede29ce8.js").then((m) => m.default));
-addDecoder(50001, () => import("./webimage-892fe81d.js").then((m) => m.default));
+addDecoder(7, () => import("./jpeg-793f8655.js").then((m) => m.default));
+addDecoder([8, 32946], () => import("./deflate-3d857d4d.js").then((m) => m.default));
+addDecoder(32773, () => import("./packbits-f9a71497.js").then((m) => m.default));
+addDecoder(34887, () => import("./lerc-e636506e.js").then((m) => m.default));
+addDecoder(50001, () => import("./webimage-bddf84dc.js").then((m) => m.default));
 function decodeRowAcc(row, stride) {
   let length2 = row.length - stride;
   let offset5 = 0;

package/dist/index.js

@@ -1,4 +1,4 @@
-import { a, H } from "./index-99684608.js";
+import { a, H } from "./index-3c0e8e85.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{jpeg-91201fe5.js → jpeg-793f8655.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-99684608.js";
+import { B as BaseDecoder } from "./index-3c0e8e85.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{lerc-ede29ce8.js → lerc-e636506e.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
-import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-99684608.js";
+import { g as getDefaultExportFromCjs, B as BaseDecoder } from "./index-3c0e8e85.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{lzw-dcec678f.js → lzw-72ff5da2.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-99684608.js";
+import { B as BaseDecoder } from "./index-3c0e8e85.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{packbits-1f0b4f8a.js → packbits-f9a71497.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-99684608.js";
+import { B as BaseDecoder } from "./index-3c0e8e85.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{raw-ed466def.js → raw-7b8f8ab9.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-99684608.js";
+import { B as BaseDecoder } from "./index-3c0e8e85.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{webimage-892fe81d.js → webimage-bddf84dc.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-99684608.js";
+import { B as BaseDecoder } from "./index-3c0e8e85.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/heatmap",
-  "version": "3.2.2",
+  "version": "3.3.0",
   "author": "Gehlenborg Lab",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -20,14 +20,14 @@
     "lodash-es": "^4.17.21",
     "uuid": "^9.0.0",
     "react-aria": "^3.28.0",
-    "@vitessce/constants-internal": "3.2.2",
-    "@vitessce/gl": "3.2.2",
-    "@vitessce/legend": "3.2.2",
-    "@vitessce/sets-utils": "3.2.2",
-    "@vitessce/tooltip": "3.2.2",
-    "@vitessce/utils": "3.2.2",
-    "@vitessce/vit-s": "3.2.2",
-    "@vitessce/workers": "3.2.2"
+    "@vitessce/constants-internal": "3.3.0",
+    "@vitessce/legend": "3.3.0",
+    "@vitessce/sets-utils": "3.3.0",
+    "@vitessce/gl": "3.3.0",
+    "@vitessce/tooltip": "3.3.0",
+    "@vitessce/utils": "3.3.0",
+    "@vitessce/vit-s": "3.3.0",
+    "@vitessce/workers": "3.3.0"
   },
   "devDependencies": {
     "@testing-library/jest-dom": "^5.16.4",