@vitessce/constants-internal 3.5.9 → 3.5.11

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (11) hide show
  1. package/dist/index.js +56 -6
  2. package/dist-tsc/constants.d.ts +5 -0
  3. package/dist-tsc/constants.d.ts.map +1 -1
  4. package/dist-tsc/constants.js +5 -0
  5. package/dist-tsc/coordination.d.ts.map +1 -1
  6. package/dist-tsc/coordination.js +45 -0
  7. package/dist-tsc/version.json +3 -3
  8. package/package.json +1 -1
  9. package/src/constants.ts +5 -0
  10. package/src/coordination.ts +45 -0
  11. package/src/version.json +3 -3
package/dist/index.js CHANGED
@@ -24,7 +24,9 @@ const ViewType = {
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  LINK_CONTROLLER: "linkController",
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  NEUROGLANCER: "neuroglancer",
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  DUAL_SCATTERPLOT: "dualScatterplot",
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- TREEMAP: "treemap"
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+ TREEMAP: "treemap",
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+ SAMPLE_SET_PAIR_MANAGER: "sampleSetPairManager",
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+ FEATURE_STATS_TABLE: "featureStatsTable"
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  };
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  const DataType = {
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  OBS_LABELS: "obsLabels",
@@ -264,6 +266,7 @@ const CoordinationType = {
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  FEATURE_VALUE_COLORMAP: "featureValueColormap",
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  FEATURE_VALUE_TRANSFORM: "featureValueTransform",
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  FEATURE_VALUE_COLORMAP_RANGE: "featureValueColormapRange",
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+ FEATURE_AGGREGATION_STRATEGY: "featureAggregationStrategy",
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  OBS_COLOR_ENCODING: "obsColorEncoding",
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  SPATIAL_IMAGE_LAYER: "spatialImageLayer",
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  SPATIAL_SEGMENTATION_LAYER: "spatialSegmentationLayer",
@@ -378,7 +381,9 @@ const ViewHelpMapping = {
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  TREEMAP: "The treemap provides an overview of the current state of sample-level or cell-level selection and filtering.",
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  VOLCANO_PLOT: "The volcano plot displays differential expression results. Each data point represents a feature (as opposed to an observation).",
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  OBS_SET_COMPOSITION_BAR_PLOT: "The set composition bar plot displays the results of a compositional analysis conducted using the scCODA method (Büttner et al. 2021 Nature Communications).",
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- FEATURE_SET_ENRICHMENT_BAR_PLOT: "The feature set enrichment bar plot displays the results of a hypergeometric test applied to the differential expression test results to identify enriched pathway gene sets."
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+ FEATURE_SET_ENRICHMENT_BAR_PLOT: "The feature set enrichment bar plot displays the results of a hypergeometric test applied to the differential expression test results to identify enriched pathway gene sets.",
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+ SAMPLE_SET_PAIR_MANAGER: "Select pairs of sample groups.",
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+ FEATURE_STATS_TABLE: "This table displays per-feature statistics, for example, from a differential expression test."
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  };
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  const FILE_TYPE_DATA_TYPE_MAPPING = {
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  // For new file types
@@ -596,7 +601,8 @@ const AUTO_INDEPENDENT_COORDINATION_TYPES = [
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  CoordinationType.EMBEDDING_OBS_SET_LABELS_VISIBLE,
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  CoordinationType.EMBEDDING_OBS_SET_LABEL_SIZE,
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  CoordinationType.EMBEDDING_OBS_RADIUS,
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- CoordinationType.EMBEDDING_OBS_OPACITY
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+ CoordinationType.EMBEDDING_OBS_OPACITY,
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+ CoordinationType.FEATURE_AGGREGATION_STRATEGY
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  ];
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  const COMPONENT_COORDINATION_TYPES = {
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  [ViewType.NEUROGLANCER]: [
@@ -631,6 +637,7 @@ const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_SELECTION,
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  CoordinationType.FEATURE_VALUE_COLORMAP,
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  CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
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+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
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  CoordinationType.OBS_COLOR_ENCODING,
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  CoordinationType.ADDITIONAL_OBS_SETS,
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  CoordinationType.TOOLTIPS_VISIBLE,
@@ -674,6 +681,7 @@ const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_SELECTION,
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  CoordinationType.FEATURE_VALUE_COLORMAP,
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  CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
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+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
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  CoordinationType.OBS_COLOR_ENCODING,
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  CoordinationType.ADDITIONAL_OBS_SETS,
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  CoordinationType.TOOLTIPS_VISIBLE,
@@ -753,6 +761,7 @@ const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_SELECTION,
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  CoordinationType.FEATURE_VALUE_COLORMAP,
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  CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
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+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
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  CoordinationType.OBS_COLOR_ENCODING,
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  CoordinationType.ADDITIONAL_OBS_SETS,
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  CoordinationType.MOLECULE_HIGHLIGHT,
@@ -790,6 +799,7 @@ const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_SELECTION,
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  CoordinationType.FEATURE_VALUE_COLORMAP,
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  CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
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+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
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  CoordinationType.OBS_COLOR_ENCODING,
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  CoordinationType.ADDITIONAL_OBS_SETS,
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  CoordinationType.MOLECULE_HIGHLIGHT,
@@ -903,6 +913,7 @@ const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_SELECTION,
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  CoordinationType.FEATURE_VALUE_TRANSFORM,
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  CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT,
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+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
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  CoordinationType.OBS_SET_SELECTION,
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  CoordinationType.OBS_SET_FILTER,
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  CoordinationType.OBS_SET_HIGHLIGHT,
@@ -918,6 +929,7 @@ const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_TYPE,
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  CoordinationType.FEATURE_VALUE_TYPE,
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  CoordinationType.FEATURE_SELECTION,
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+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
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  CoordinationType.ADDITIONAL_OBS_SETS,
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  CoordinationType.OBS_SET_COLOR,
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  CoordinationType.OBS_COLOR_ENCODING,
@@ -996,6 +1008,7 @@ const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_VALUE_COLORMAP,
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  CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
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  CoordinationType.FEATURE_SELECTION,
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+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
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  CoordinationType.TOOLTIPS_VISIBLE,
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  CoordinationType.TOOLTIP_CROSSHAIRS_VISIBLE,
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  CoordinationType.LEGEND_VISIBLE,
@@ -1036,6 +1049,7 @@ const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT,
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  CoordinationType.FEATURE_VALUE_POSITIVITY_THRESHOLD,
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  CoordinationType.FEATURE_VALUE_COLORMAP,
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+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
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  CoordinationType.OBS_SET_SELECTION,
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  CoordinationType.OBS_SET_FILTER,
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  CoordinationType.OBS_SET_HIGHLIGHT,
@@ -1064,6 +1078,7 @@ const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_SELECTION,
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  CoordinationType.FEATURE_VALUE_TRANSFORM,
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  CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT,
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+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
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  CoordinationType.OBS_SET_SELECTION,
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  CoordinationType.OBS_SET_HIGHLIGHT,
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  CoordinationType.OBS_HIGHLIGHT,
@@ -1098,6 +1113,33 @@ const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_POINT_FOLD_CHANGE_THRESHOLD,
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  CoordinationType.FEATURE_LABEL_FOLD_CHANGE_THRESHOLD
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  ],
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+ [ViewType.FEATURE_STATS_TABLE]: [
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+ CoordinationType.DATASET,
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+ CoordinationType.OBS_TYPE,
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+ CoordinationType.FEATURE_TYPE,
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+ CoordinationType.SAMPLE_TYPE,
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+ // For selection of case-control sets of samples:
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+ CoordinationType.SAMPLE_SET_SELECTION,
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+ // For selection of one-vs-others sets of observations:
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+ CoordinationType.OBS_SET_SELECTION,
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+ // TODO: CoordinationType.FEATURE_SET_SELECTION,
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+ // TODO: CoordinationType.FEATURE_SET_HIGHLIGHT,
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+ // TODO: CoordinationType.FEATURE_SET_COLOR,
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+ CoordinationType.FEATURE_HIGHLIGHT,
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+ CoordinationType.FEATURE_SELECTION,
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+ CoordinationType.FEATURE_VALUE_COLORMAP,
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+ CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
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+ // TODO: CoordinationType.FEATURE_COLOR_ENCODING,
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+ // TODO: CoordinationType.ADDITIONAL_FEATURE_SETS,
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+ CoordinationType.TOOLTIPS_VISIBLE,
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+ CoordinationType.ADDITIONAL_OBS_SETS,
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+ CoordinationType.OBS_SET_COLOR,
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+ CoordinationType.SAMPLE_SET_COLOR,
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+ CoordinationType.FEATURE_POINT_SIGNIFICANCE_THRESHOLD,
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+ CoordinationType.FEATURE_LABEL_SIGNIFICANCE_THRESHOLD,
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+ CoordinationType.FEATURE_POINT_FOLD_CHANGE_THRESHOLD,
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+ CoordinationType.FEATURE_LABEL_FOLD_CHANGE_THRESHOLD
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+ ],
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  [ViewType.OBS_SET_COMPOSITION_BAR_PLOT]: [
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  CoordinationType.DATASET,
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  CoordinationType.OBS_TYPE,
@@ -1141,11 +1183,19 @@ const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.OBS_TYPE,
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  CoordinationType.SAMPLE_TYPE,
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  CoordinationType.FEATURE_SELECTION,
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+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
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  CoordinationType.SAMPLE_SET_SELECTION,
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  CoordinationType.SAMPLE_SET_FILTER,
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  CoordinationType.OBS_SET_SELECTION,
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  CoordinationType.OBS_SET_FILTER
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  ],
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+ [ViewType.SAMPLE_SET_PAIR_MANAGER]: [
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+ CoordinationType.DATASET,
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+ CoordinationType.OBS_TYPE,
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+ CoordinationType.SAMPLE_TYPE,
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+ CoordinationType.SAMPLE_SET_SELECTION,
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+ CoordinationType.SAMPLE_SET_FILTER
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+ ],
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  [ViewType.TREEMAP]: [
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  CoordinationType.DATASET,
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  CoordinationType.OBS_TYPE,
@@ -1174,10 +1224,10 @@ const COMPONENT_COORDINATION_TYPES = {
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  ]
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  };
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  const note = "This file is autogenerated by .changeset/post-changelog.mjs.";
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- const version = "3.5.9";
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- const date = "2025-03-12";
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+ const version = "3.5.11";
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+ const date = "2025-04-03";
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  const branch = "changeset-release/main";
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- const hash = "7ec4174e";
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+ const hash = "8043908f";
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  const version$1 = {
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  note,
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  version,
package/dist-tsc/constants.d.ts CHANGED
@@ -30,6 +30,8 @@ export declare const ViewType: {
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  NEUROGLANCER: string;
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  DUAL_SCATTERPLOT: string;
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  TREEMAP: string;
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+ SAMPLE_SET_PAIR_MANAGER: string;
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+ FEATURE_STATS_TABLE: string;
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  };
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  export declare const DataType: {
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  OBS_LABELS: string;
@@ -237,6 +239,7 @@ export declare const CoordinationType: {
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  FEATURE_VALUE_COLORMAP: string;
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  FEATURE_VALUE_TRANSFORM: string;
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  FEATURE_VALUE_COLORMAP_RANGE: string;
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+ FEATURE_AGGREGATION_STRATEGY: string;
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  OBS_COLOR_ENCODING: string;
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  SPATIAL_IMAGE_LAYER: string;
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  SPATIAL_SEGMENTATION_LAYER: string;
@@ -344,5 +347,7 @@ export declare const ViewHelpMapping: {
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  VOLCANO_PLOT: string;
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  OBS_SET_COMPOSITION_BAR_PLOT: string;
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  FEATURE_SET_ENRICHMENT_BAR_PLOT: string;
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+ SAMPLE_SET_PAIR_MANAGER: string;
351
+ FEATURE_STATS_TABLE: string;
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  };
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  //# sourceMappingURL=constants.d.ts.map
package/dist-tsc/constants.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;CA2BpB,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;CAmBpB,CAAC;AAEF,eAAO,MAAM,iBAAiB;;;;;;;;;;CAc7B,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CA4IpB,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CA2I5B,CAAC;AAEF,eAAO,MAAM,MAAM;;;;CAIlB,CAAC;AAEF,eAAO,MAAM,eAAe;;;CAG3B,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;CAqB3B,CAAC"}
1
+ {"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CA6BpB,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;CAmBpB,CAAC;AAEF,eAAO,MAAM,iBAAiB;;;;;;;;;;CAc7B,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CA4IpB,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CA4I5B,CAAC;AAEF,eAAO,MAAM,MAAM;;;;CAIlB,CAAC;AAEF,eAAO,MAAM,eAAe;;;CAG3B,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;CAuB3B,CAAC"}
package/dist-tsc/constants.js CHANGED
@@ -30,6 +30,8 @@ export const ViewType = {
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  NEUROGLANCER: 'neuroglancer',
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  DUAL_SCATTERPLOT: 'dualScatterplot',
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  TREEMAP: 'treemap',
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+ SAMPLE_SET_PAIR_MANAGER: 'sampleSetPairManager',
34
+ FEATURE_STATS_TABLE: 'featureStatsTable',
33
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  };
34
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  export const DataType = {
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  OBS_LABELS: 'obsLabels',
@@ -264,6 +266,7 @@ export const CoordinationType = {
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  FEATURE_VALUE_COLORMAP: 'featureValueColormap',
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  FEATURE_VALUE_TRANSFORM: 'featureValueTransform',
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  FEATURE_VALUE_COLORMAP_RANGE: 'featureValueColormapRange',
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+ FEATURE_AGGREGATION_STRATEGY: 'featureAggregationStrategy',
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  OBS_COLOR_ENCODING: 'obsColorEncoding',
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  SPATIAL_IMAGE_LAYER: 'spatialImageLayer',
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  SPATIAL_SEGMENTATION_LAYER: 'spatialSegmentationLayer',
@@ -378,4 +381,6 @@ export const ViewHelpMapping = {
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  VOLCANO_PLOT: 'The volcano plot displays differential expression results. Each data point represents a feature (as opposed to an observation).',
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  OBS_SET_COMPOSITION_BAR_PLOT: 'The set composition bar plot displays the results of a compositional analysis conducted using the scCODA method (Büttner et al. 2021 Nature Communications).',
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  FEATURE_SET_ENRICHMENT_BAR_PLOT: 'The feature set enrichment bar plot displays the results of a hypergeometric test applied to the differential expression test results to identify enriched pathway gene sets.',
384
+ SAMPLE_SET_PAIR_MANAGER: 'Select pairs of sample groups.',
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+ FEATURE_STATS_TABLE: 'This table displays per-feature statistics, for example, from a differential expression test.',
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  };
package/dist-tsc/coordination.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"coordination.d.ts","sourceRoot":"","sources":["../src/coordination.ts"],"names":[],"mappings":"AASA,eAAO,MAAM,mCAAmC,UAc/C,CAAC;AAEF;;;;;;;KAOK;AACL,eAAO,MAAM,4BAA4B;;;CA8jBxC,CAAC"}
1
+ {"version":3,"file":"coordination.d.ts","sourceRoot":"","sources":["../src/coordination.ts"],"names":[],"mappings":"AASA,eAAO,MAAM,mCAAmC,UAe/C,CAAC;AAEF;;;;;;;KAOK;AACL,eAAO,MAAM,4BAA4B;;;CA0mBxC,CAAC"}
package/dist-tsc/coordination.js CHANGED
@@ -20,6 +20,7 @@ export const AUTO_INDEPENDENT_COORDINATION_TYPES = [
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  CoordinationType.EMBEDDING_OBS_SET_LABEL_SIZE,
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  CoordinationType.EMBEDDING_OBS_RADIUS,
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  CoordinationType.EMBEDDING_OBS_OPACITY,
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+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
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  ];
24
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  /**
25
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  * Mapping from component type to
@@ -62,6 +63,7 @@ export const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_SELECTION,
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  CoordinationType.FEATURE_VALUE_COLORMAP,
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  CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
66
+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
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  CoordinationType.OBS_COLOR_ENCODING,
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  CoordinationType.ADDITIONAL_OBS_SETS,
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  CoordinationType.TOOLTIPS_VISIBLE,
@@ -105,6 +107,7 @@ export const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_SELECTION,
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  CoordinationType.FEATURE_VALUE_COLORMAP,
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  CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
110
+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
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  CoordinationType.OBS_COLOR_ENCODING,
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  CoordinationType.ADDITIONAL_OBS_SETS,
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  CoordinationType.TOOLTIPS_VISIBLE,
@@ -184,6 +187,7 @@ export const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_SELECTION,
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  CoordinationType.FEATURE_VALUE_COLORMAP,
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  CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
190
+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
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  CoordinationType.OBS_COLOR_ENCODING,
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  CoordinationType.ADDITIONAL_OBS_SETS,
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  CoordinationType.MOLECULE_HIGHLIGHT,
@@ -221,6 +225,7 @@ export const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_SELECTION,
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  CoordinationType.FEATURE_VALUE_COLORMAP,
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  CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
228
+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
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  CoordinationType.OBS_COLOR_ENCODING,
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  CoordinationType.ADDITIONAL_OBS_SETS,
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  CoordinationType.MOLECULE_HIGHLIGHT,
@@ -334,6 +339,7 @@ export const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_SELECTION,
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  CoordinationType.FEATURE_VALUE_TRANSFORM,
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  CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT,
342
+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
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  CoordinationType.OBS_SET_SELECTION,
338
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  CoordinationType.OBS_SET_FILTER,
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  CoordinationType.OBS_SET_HIGHLIGHT,
@@ -349,6 +355,7 @@ export const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_TYPE,
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  CoordinationType.FEATURE_VALUE_TYPE,
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  CoordinationType.FEATURE_SELECTION,
358
+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
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  CoordinationType.ADDITIONAL_OBS_SETS,
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  CoordinationType.OBS_SET_COLOR,
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  CoordinationType.OBS_COLOR_ENCODING,
@@ -427,6 +434,7 @@ export const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_VALUE_COLORMAP,
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  CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
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  CoordinationType.FEATURE_SELECTION,
437
+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
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  CoordinationType.TOOLTIPS_VISIBLE,
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  CoordinationType.TOOLTIP_CROSSHAIRS_VISIBLE,
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  CoordinationType.LEGEND_VISIBLE,
@@ -467,6 +475,7 @@ export const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT,
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  CoordinationType.FEATURE_VALUE_POSITIVITY_THRESHOLD,
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  CoordinationType.FEATURE_VALUE_COLORMAP,
478
+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
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  CoordinationType.OBS_SET_SELECTION,
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  CoordinationType.OBS_SET_FILTER,
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  CoordinationType.OBS_SET_HIGHLIGHT,
@@ -495,6 +504,7 @@ export const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_SELECTION,
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  CoordinationType.FEATURE_VALUE_TRANSFORM,
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  CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT,
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+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
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  CoordinationType.OBS_SET_SELECTION,
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  CoordinationType.OBS_SET_HIGHLIGHT,
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510
  CoordinationType.OBS_HIGHLIGHT,
@@ -529,6 +539,33 @@ export const COMPONENT_COORDINATION_TYPES = {
529
539
  CoordinationType.FEATURE_POINT_FOLD_CHANGE_THRESHOLD,
530
540
  CoordinationType.FEATURE_LABEL_FOLD_CHANGE_THRESHOLD,
531
541
  ],
542
+ [ViewType.FEATURE_STATS_TABLE]: [
543
+ CoordinationType.DATASET,
544
+ CoordinationType.OBS_TYPE,
545
+ CoordinationType.FEATURE_TYPE,
546
+ CoordinationType.SAMPLE_TYPE,
547
+ // For selection of case-control sets of samples:
548
+ CoordinationType.SAMPLE_SET_SELECTION,
549
+ // For selection of one-vs-others sets of observations:
550
+ CoordinationType.OBS_SET_SELECTION,
551
+ // TODO: CoordinationType.FEATURE_SET_SELECTION,
552
+ // TODO: CoordinationType.FEATURE_SET_HIGHLIGHT,
553
+ // TODO: CoordinationType.FEATURE_SET_COLOR,
554
+ CoordinationType.FEATURE_HIGHLIGHT,
555
+ CoordinationType.FEATURE_SELECTION,
556
+ CoordinationType.FEATURE_VALUE_COLORMAP,
557
+ CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
558
+ // TODO: CoordinationType.FEATURE_COLOR_ENCODING,
559
+ // TODO: CoordinationType.ADDITIONAL_FEATURE_SETS,
560
+ CoordinationType.TOOLTIPS_VISIBLE,
561
+ CoordinationType.ADDITIONAL_OBS_SETS,
562
+ CoordinationType.OBS_SET_COLOR,
563
+ CoordinationType.SAMPLE_SET_COLOR,
564
+ CoordinationType.FEATURE_POINT_SIGNIFICANCE_THRESHOLD,
565
+ CoordinationType.FEATURE_LABEL_SIGNIFICANCE_THRESHOLD,
566
+ CoordinationType.FEATURE_POINT_FOLD_CHANGE_THRESHOLD,
567
+ CoordinationType.FEATURE_LABEL_FOLD_CHANGE_THRESHOLD,
568
+ ],
532
569
  [ViewType.OBS_SET_COMPOSITION_BAR_PLOT]: [
533
570
  CoordinationType.DATASET,
534
571
  CoordinationType.OBS_TYPE,
@@ -572,11 +609,19 @@ export const COMPONENT_COORDINATION_TYPES = {
572
609
  CoordinationType.OBS_TYPE,
573
610
  CoordinationType.SAMPLE_TYPE,
574
611
  CoordinationType.FEATURE_SELECTION,
612
+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
575
613
  CoordinationType.SAMPLE_SET_SELECTION,
576
614
  CoordinationType.SAMPLE_SET_FILTER,
577
615
  CoordinationType.OBS_SET_SELECTION,
578
616
  CoordinationType.OBS_SET_FILTER,
579
617
  ],
618
+ [ViewType.SAMPLE_SET_PAIR_MANAGER]: [
619
+ CoordinationType.DATASET,
620
+ CoordinationType.OBS_TYPE,
621
+ CoordinationType.SAMPLE_TYPE,
622
+ CoordinationType.SAMPLE_SET_SELECTION,
623
+ CoordinationType.SAMPLE_SET_FILTER,
624
+ ],
580
625
  [ViewType.TREEMAP]: [
581
626
  CoordinationType.DATASET,
582
627
  CoordinationType.OBS_TYPE,
package/dist-tsc/version.json CHANGED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "note": "This file is autogenerated by .changeset/post-changelog.mjs.",
3
- "version": "3.5.9",
4
- "date": "2025-03-12",
3
+ "version": "3.5.11",
4
+ "date": "2025-04-03",
5
5
  "branch": "changeset-release/main",
6
- "hash": "7ec4174e"
6
+ "hash": "8043908f"
7
7
  }
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@vitessce/constants-internal",
3
- "version": "3.5.9",
3
+ "version": "3.5.11",
4
4
  "author": "HIDIVE Lab at HMS",
5
5
  "homepage": "http://vitessce.io",
6
6
  "repository": {
package/src/constants.ts CHANGED
@@ -30,6 +30,8 @@ export const ViewType = {
30
30
  NEUROGLANCER: 'neuroglancer',
31
31
  DUAL_SCATTERPLOT: 'dualScatterplot',
32
32
  TREEMAP: 'treemap',
33
+ SAMPLE_SET_PAIR_MANAGER: 'sampleSetPairManager',
34
+ FEATURE_STATS_TABLE: 'featureStatsTable',
33
35
  };
34
36
 
35
37
  export const DataType = {
@@ -275,6 +277,7 @@ export const CoordinationType = {
275
277
  FEATURE_VALUE_COLORMAP: 'featureValueColormap',
276
278
  FEATURE_VALUE_TRANSFORM: 'featureValueTransform',
277
279
  FEATURE_VALUE_COLORMAP_RANGE: 'featureValueColormapRange',
280
+ FEATURE_AGGREGATION_STRATEGY: 'featureAggregationStrategy',
278
281
  OBS_COLOR_ENCODING: 'obsColorEncoding',
279
282
  SPATIAL_IMAGE_LAYER: 'spatialImageLayer',
280
283
  SPATIAL_SEGMENTATION_LAYER: 'spatialSegmentationLayer',
@@ -392,4 +395,6 @@ export const ViewHelpMapping = {
392
395
  VOLCANO_PLOT: 'The volcano plot displays differential expression results. Each data point represents a feature (as opposed to an observation).',
393
396
  OBS_SET_COMPOSITION_BAR_PLOT: 'The set composition bar plot displays the results of a compositional analysis conducted using the scCODA method (Büttner et al. 2021 Nature Communications).',
394
397
  FEATURE_SET_ENRICHMENT_BAR_PLOT: 'The feature set enrichment bar plot displays the results of a hypergeometric test applied to the differential expression test results to identify enriched pathway gene sets.',
398
+ SAMPLE_SET_PAIR_MANAGER: 'Select pairs of sample groups.',
399
+ FEATURE_STATS_TABLE: 'This table displays per-feature statistics, for example, from a differential expression test.',
395
400
  };
package/src/coordination.ts CHANGED
@@ -21,6 +21,7 @@ export const AUTO_INDEPENDENT_COORDINATION_TYPES = [
21
21
  CoordinationType.EMBEDDING_OBS_SET_LABEL_SIZE,
22
22
  CoordinationType.EMBEDDING_OBS_RADIUS,
23
23
  CoordinationType.EMBEDDING_OBS_OPACITY,
24
+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
24
25
  ];
25
26
 
26
27
  /**
@@ -64,6 +65,7 @@ export const COMPONENT_COORDINATION_TYPES = {
64
65
  CoordinationType.FEATURE_SELECTION,
65
66
  CoordinationType.FEATURE_VALUE_COLORMAP,
66
67
  CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
68
+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
67
69
  CoordinationType.OBS_COLOR_ENCODING,
68
70
  CoordinationType.ADDITIONAL_OBS_SETS,
69
71
  CoordinationType.TOOLTIPS_VISIBLE,
@@ -107,6 +109,7 @@ export const COMPONENT_COORDINATION_TYPES = {
107
109
  CoordinationType.FEATURE_SELECTION,
108
110
  CoordinationType.FEATURE_VALUE_COLORMAP,
109
111
  CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
112
+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
110
113
  CoordinationType.OBS_COLOR_ENCODING,
111
114
  CoordinationType.ADDITIONAL_OBS_SETS,
112
115
  CoordinationType.TOOLTIPS_VISIBLE,
@@ -186,6 +189,7 @@ export const COMPONENT_COORDINATION_TYPES = {
186
189
  CoordinationType.FEATURE_SELECTION,
187
190
  CoordinationType.FEATURE_VALUE_COLORMAP,
188
191
  CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
192
+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
189
193
  CoordinationType.OBS_COLOR_ENCODING,
190
194
  CoordinationType.ADDITIONAL_OBS_SETS,
191
195
  CoordinationType.MOLECULE_HIGHLIGHT,
@@ -223,6 +227,7 @@ export const COMPONENT_COORDINATION_TYPES = {
223
227
  CoordinationType.FEATURE_SELECTION,
224
228
  CoordinationType.FEATURE_VALUE_COLORMAP,
225
229
  CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
230
+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
226
231
  CoordinationType.OBS_COLOR_ENCODING,
227
232
  CoordinationType.ADDITIONAL_OBS_SETS,
228
233
  CoordinationType.MOLECULE_HIGHLIGHT,
@@ -336,6 +341,7 @@ export const COMPONENT_COORDINATION_TYPES = {
336
341
  CoordinationType.FEATURE_SELECTION,
337
342
  CoordinationType.FEATURE_VALUE_TRANSFORM,
338
343
  CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT,
344
+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
339
345
  CoordinationType.OBS_SET_SELECTION,
340
346
  CoordinationType.OBS_SET_FILTER,
341
347
  CoordinationType.OBS_SET_HIGHLIGHT,
@@ -351,6 +357,7 @@ export const COMPONENT_COORDINATION_TYPES = {
351
357
  CoordinationType.FEATURE_TYPE,
352
358
  CoordinationType.FEATURE_VALUE_TYPE,
353
359
  CoordinationType.FEATURE_SELECTION,
360
+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
354
361
  CoordinationType.ADDITIONAL_OBS_SETS,
355
362
  CoordinationType.OBS_SET_COLOR,
356
363
  CoordinationType.OBS_COLOR_ENCODING,
@@ -429,6 +436,7 @@ export const COMPONENT_COORDINATION_TYPES = {
429
436
  CoordinationType.FEATURE_VALUE_COLORMAP,
430
437
  CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
431
438
  CoordinationType.FEATURE_SELECTION,
439
+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
432
440
  CoordinationType.TOOLTIPS_VISIBLE,
433
441
  CoordinationType.TOOLTIP_CROSSHAIRS_VISIBLE,
434
442
  CoordinationType.LEGEND_VISIBLE,
@@ -469,6 +477,7 @@ export const COMPONENT_COORDINATION_TYPES = {
469
477
  CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT,
470
478
  CoordinationType.FEATURE_VALUE_POSITIVITY_THRESHOLD,
471
479
  CoordinationType.FEATURE_VALUE_COLORMAP,
480
+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
472
481
  CoordinationType.OBS_SET_SELECTION,
473
482
  CoordinationType.OBS_SET_FILTER,
474
483
  CoordinationType.OBS_SET_HIGHLIGHT,
@@ -497,6 +506,7 @@ export const COMPONENT_COORDINATION_TYPES = {
497
506
  CoordinationType.FEATURE_SELECTION,
498
507
  CoordinationType.FEATURE_VALUE_TRANSFORM,
499
508
  CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT,
509
+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
500
510
  CoordinationType.OBS_SET_SELECTION,
501
511
  CoordinationType.OBS_SET_HIGHLIGHT,
502
512
  CoordinationType.OBS_HIGHLIGHT,
@@ -531,6 +541,33 @@ export const COMPONENT_COORDINATION_TYPES = {
531
541
  CoordinationType.FEATURE_POINT_FOLD_CHANGE_THRESHOLD,
532
542
  CoordinationType.FEATURE_LABEL_FOLD_CHANGE_THRESHOLD,
533
543
  ],
544
+ [ViewType.FEATURE_STATS_TABLE]: [
545
+ CoordinationType.DATASET,
546
+ CoordinationType.OBS_TYPE,
547
+ CoordinationType.FEATURE_TYPE,
548
+ CoordinationType.SAMPLE_TYPE,
549
+ // For selection of case-control sets of samples:
550
+ CoordinationType.SAMPLE_SET_SELECTION,
551
+ // For selection of one-vs-others sets of observations:
552
+ CoordinationType.OBS_SET_SELECTION,
553
+ // TODO: CoordinationType.FEATURE_SET_SELECTION,
554
+ // TODO: CoordinationType.FEATURE_SET_HIGHLIGHT,
555
+ // TODO: CoordinationType.FEATURE_SET_COLOR,
556
+ CoordinationType.FEATURE_HIGHLIGHT,
557
+ CoordinationType.FEATURE_SELECTION,
558
+ CoordinationType.FEATURE_VALUE_COLORMAP,
559
+ CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
560
+ // TODO: CoordinationType.FEATURE_COLOR_ENCODING,
561
+ // TODO: CoordinationType.ADDITIONAL_FEATURE_SETS,
562
+ CoordinationType.TOOLTIPS_VISIBLE,
563
+ CoordinationType.ADDITIONAL_OBS_SETS,
564
+ CoordinationType.OBS_SET_COLOR,
565
+ CoordinationType.SAMPLE_SET_COLOR,
566
+ CoordinationType.FEATURE_POINT_SIGNIFICANCE_THRESHOLD,
567
+ CoordinationType.FEATURE_LABEL_SIGNIFICANCE_THRESHOLD,
568
+ CoordinationType.FEATURE_POINT_FOLD_CHANGE_THRESHOLD,
569
+ CoordinationType.FEATURE_LABEL_FOLD_CHANGE_THRESHOLD,
570
+ ],
534
571
  [ViewType.OBS_SET_COMPOSITION_BAR_PLOT]: [
535
572
  CoordinationType.DATASET,
536
573
  CoordinationType.OBS_TYPE,
@@ -574,11 +611,19 @@ export const COMPONENT_COORDINATION_TYPES = {
574
611
  CoordinationType.OBS_TYPE,
575
612
  CoordinationType.SAMPLE_TYPE,
576
613
  CoordinationType.FEATURE_SELECTION,
614
+ CoordinationType.FEATURE_AGGREGATION_STRATEGY,
577
615
  CoordinationType.SAMPLE_SET_SELECTION,
578
616
  CoordinationType.SAMPLE_SET_FILTER,
579
617
  CoordinationType.OBS_SET_SELECTION,
580
618
  CoordinationType.OBS_SET_FILTER,
581
619
  ],
620
+ [ViewType.SAMPLE_SET_PAIR_MANAGER]: [
621
+ CoordinationType.DATASET,
622
+ CoordinationType.OBS_TYPE,
623
+ CoordinationType.SAMPLE_TYPE,
624
+ CoordinationType.SAMPLE_SET_SELECTION,
625
+ CoordinationType.SAMPLE_SET_FILTER,
626
+ ],
582
627
  [ViewType.TREEMAP]: [
583
628
  CoordinationType.DATASET,
584
629
  CoordinationType.OBS_TYPE,
package/src/version.json CHANGED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "note": "This file is autogenerated by .changeset/post-changelog.mjs.",
3
- "version": "3.5.9",
4
- "date": "2025-03-12",
3
+ "version": "3.5.11",
4
+ "date": "2025-04-03",
5
5
  "branch": "changeset-release/main",
6
- "hash": "7ec4174e"
6
+ "hash": "8043908f"
7
7
  }