@vitessce/constants-internal 3.5.8 → 3.5.10

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Files changed (11) hide show
  1. package/dist/index.js +43 -5
  2. package/dist-tsc/constants.d.ts +4 -0
  3. package/dist-tsc/constants.d.ts.map +1 -1
  4. package/dist-tsc/constants.js +4 -0
  5. package/dist-tsc/coordination.d.ts.map +1 -1
  6. package/dist-tsc/coordination.js +34 -0
  7. package/dist-tsc/version.json +3 -3
  8. package/package.json +1 -1
  9. package/src/constants.ts +4 -0
  10. package/src/coordination.ts +34 -0
  11. package/src/version.json +3 -3
package/dist/index.js CHANGED
@@ -24,7 +24,9 @@ const ViewType = {
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  LINK_CONTROLLER: "linkController",
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  NEUROGLANCER: "neuroglancer",
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  DUAL_SCATTERPLOT: "dualScatterplot",
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- TREEMAP: "treemap"
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+ TREEMAP: "treemap",
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+ SAMPLE_SET_PAIR_MANAGER: "sampleSetPairManager",
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+ FEATURE_STATS_TABLE: "featureStatsTable"
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  };
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  const DataType = {
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  OBS_LABELS: "obsLabels",
@@ -378,7 +380,9 @@ const ViewHelpMapping = {
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  TREEMAP: "The treemap provides an overview of the current state of sample-level or cell-level selection and filtering.",
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  VOLCANO_PLOT: "The volcano plot displays differential expression results. Each data point represents a feature (as opposed to an observation).",
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  OBS_SET_COMPOSITION_BAR_PLOT: "The set composition bar plot displays the results of a compositional analysis conducted using the scCODA method (Büttner et al. 2021 Nature Communications).",
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- FEATURE_SET_ENRICHMENT_BAR_PLOT: "The feature set enrichment bar plot displays the results of a hypergeometric test applied to the differential expression test results to identify enriched pathway gene sets."
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+ FEATURE_SET_ENRICHMENT_BAR_PLOT: "The feature set enrichment bar plot displays the results of a hypergeometric test applied to the differential expression test results to identify enriched pathway gene sets.",
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+ SAMPLE_SET_PAIR_MANAGER: "Select pairs of sample groups.",
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+ FEATURE_STATS_TABLE: "This table displays per-feature statistics, for example, from a differential expression test."
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  };
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  const FILE_TYPE_DATA_TYPE_MAPPING = {
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  // For new file types
@@ -1098,6 +1102,33 @@ const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_POINT_FOLD_CHANGE_THRESHOLD,
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  CoordinationType.FEATURE_LABEL_FOLD_CHANGE_THRESHOLD
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  ],
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+ [ViewType.FEATURE_STATS_TABLE]: [
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+ CoordinationType.DATASET,
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+ CoordinationType.OBS_TYPE,
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+ CoordinationType.FEATURE_TYPE,
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+ CoordinationType.SAMPLE_TYPE,
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+ // For selection of case-control sets of samples:
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+ CoordinationType.SAMPLE_SET_SELECTION,
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+ // For selection of one-vs-others sets of observations:
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+ CoordinationType.OBS_SET_SELECTION,
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+ // TODO: CoordinationType.FEATURE_SET_SELECTION,
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+ // TODO: CoordinationType.FEATURE_SET_HIGHLIGHT,
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+ // TODO: CoordinationType.FEATURE_SET_COLOR,
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+ CoordinationType.FEATURE_HIGHLIGHT,
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+ CoordinationType.FEATURE_SELECTION,
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+ CoordinationType.FEATURE_VALUE_COLORMAP,
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+ CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
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+ // TODO: CoordinationType.FEATURE_COLOR_ENCODING,
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+ // TODO: CoordinationType.ADDITIONAL_FEATURE_SETS,
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+ CoordinationType.TOOLTIPS_VISIBLE,
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+ CoordinationType.ADDITIONAL_OBS_SETS,
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+ CoordinationType.OBS_SET_COLOR,
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+ CoordinationType.SAMPLE_SET_COLOR,
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+ CoordinationType.FEATURE_POINT_SIGNIFICANCE_THRESHOLD,
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+ CoordinationType.FEATURE_LABEL_SIGNIFICANCE_THRESHOLD,
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+ CoordinationType.FEATURE_POINT_FOLD_CHANGE_THRESHOLD,
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+ CoordinationType.FEATURE_LABEL_FOLD_CHANGE_THRESHOLD
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+ ],
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  [ViewType.OBS_SET_COMPOSITION_BAR_PLOT]: [
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  CoordinationType.DATASET,
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  CoordinationType.OBS_TYPE,
@@ -1146,6 +1177,13 @@ const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.OBS_SET_SELECTION,
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  CoordinationType.OBS_SET_FILTER
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  ],
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+ [ViewType.SAMPLE_SET_PAIR_MANAGER]: [
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+ CoordinationType.DATASET,
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+ CoordinationType.OBS_TYPE,
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+ CoordinationType.SAMPLE_TYPE,
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+ CoordinationType.SAMPLE_SET_SELECTION,
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+ CoordinationType.SAMPLE_SET_FILTER
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+ ],
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  [ViewType.TREEMAP]: [
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  CoordinationType.DATASET,
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  CoordinationType.OBS_TYPE,
@@ -1174,10 +1212,10 @@ const COMPONENT_COORDINATION_TYPES = {
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  ]
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  };
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  const note = "This file is autogenerated by .changeset/post-changelog.mjs.";
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- const version = "3.5.8";
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- const date = "2025-03-06";
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+ const version = "3.5.10";
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+ const date = "2025-03-27";
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  const branch = "changeset-release/main";
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- const hash = "9066c55a";
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+ const hash = "17431b4f";
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  const version$1 = {
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  note,
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  version,
package/dist-tsc/constants.d.ts CHANGED
@@ -30,6 +30,8 @@ export declare const ViewType: {
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  NEUROGLANCER: string;
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  DUAL_SCATTERPLOT: string;
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  TREEMAP: string;
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+ SAMPLE_SET_PAIR_MANAGER: string;
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+ FEATURE_STATS_TABLE: string;
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  };
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  export declare const DataType: {
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  OBS_LABELS: string;
@@ -344,5 +346,7 @@ export declare const ViewHelpMapping: {
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  VOLCANO_PLOT: string;
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  OBS_SET_COMPOSITION_BAR_PLOT: string;
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  FEATURE_SET_ENRICHMENT_BAR_PLOT: string;
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+ SAMPLE_SET_PAIR_MANAGER: string;
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+ FEATURE_STATS_TABLE: string;
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  };
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  //# sourceMappingURL=constants.d.ts.map
package/dist-tsc/constants.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;CA2BpB,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;CAmBpB,CAAC;AAEF,eAAO,MAAM,iBAAiB;;;;;;;;;;CAc7B,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CA4IpB,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CA2I5B,CAAC;AAEF,eAAO,MAAM,MAAM;;;;CAIlB,CAAC;AAEF,eAAO,MAAM,eAAe;;;CAG3B,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;CAqB3B,CAAC"}
1
+ {"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CA6BpB,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;CAmBpB,CAAC;AAEF,eAAO,MAAM,iBAAiB;;;;;;;;;;CAc7B,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CA4IpB,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CA2I5B,CAAC;AAEF,eAAO,MAAM,MAAM;;;;CAIlB,CAAC;AAEF,eAAO,MAAM,eAAe;;;CAG3B,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;CAuB3B,CAAC"}
package/dist-tsc/constants.js CHANGED
@@ -30,6 +30,8 @@ export const ViewType = {
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  NEUROGLANCER: 'neuroglancer',
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  DUAL_SCATTERPLOT: 'dualScatterplot',
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  TREEMAP: 'treemap',
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+ SAMPLE_SET_PAIR_MANAGER: 'sampleSetPairManager',
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+ FEATURE_STATS_TABLE: 'featureStatsTable',
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  };
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  export const DataType = {
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  OBS_LABELS: 'obsLabels',
@@ -378,4 +380,6 @@ export const ViewHelpMapping = {
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  VOLCANO_PLOT: 'The volcano plot displays differential expression results. Each data point represents a feature (as opposed to an observation).',
379
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  OBS_SET_COMPOSITION_BAR_PLOT: 'The set composition bar plot displays the results of a compositional analysis conducted using the scCODA method (Büttner et al. 2021 Nature Communications).',
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  FEATURE_SET_ENRICHMENT_BAR_PLOT: 'The feature set enrichment bar plot displays the results of a hypergeometric test applied to the differential expression test results to identify enriched pathway gene sets.',
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+ SAMPLE_SET_PAIR_MANAGER: 'Select pairs of sample groups.',
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+ FEATURE_STATS_TABLE: 'This table displays per-feature statistics, for example, from a differential expression test.',
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  };
package/dist-tsc/coordination.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"coordination.d.ts","sourceRoot":"","sources":["../src/coordination.ts"],"names":[],"mappings":"AASA,eAAO,MAAM,mCAAmC,UAc/C,CAAC;AAEF;;;;;;;KAOK;AACL,eAAO,MAAM,4BAA4B;;;CA8jBxC,CAAC"}
1
+ {"version":3,"file":"coordination.d.ts","sourceRoot":"","sources":["../src/coordination.ts"],"names":[],"mappings":"AASA,eAAO,MAAM,mCAAmC,UAc/C,CAAC;AAEF;;;;;;;KAOK;AACL,eAAO,MAAM,4BAA4B;;;CAgmBxC,CAAC"}
package/dist-tsc/coordination.js CHANGED
@@ -529,6 +529,33 @@ export const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.FEATURE_POINT_FOLD_CHANGE_THRESHOLD,
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  CoordinationType.FEATURE_LABEL_FOLD_CHANGE_THRESHOLD,
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  ],
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+ [ViewType.FEATURE_STATS_TABLE]: [
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+ CoordinationType.DATASET,
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+ CoordinationType.OBS_TYPE,
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+ CoordinationType.FEATURE_TYPE,
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+ CoordinationType.SAMPLE_TYPE,
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+ // For selection of case-control sets of samples:
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+ CoordinationType.SAMPLE_SET_SELECTION,
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+ // For selection of one-vs-others sets of observations:
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+ CoordinationType.OBS_SET_SELECTION,
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+ // TODO: CoordinationType.FEATURE_SET_SELECTION,
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+ // TODO: CoordinationType.FEATURE_SET_HIGHLIGHT,
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+ // TODO: CoordinationType.FEATURE_SET_COLOR,
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+ CoordinationType.FEATURE_HIGHLIGHT,
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+ CoordinationType.FEATURE_SELECTION,
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+ CoordinationType.FEATURE_VALUE_COLORMAP,
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+ CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
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+ // TODO: CoordinationType.FEATURE_COLOR_ENCODING,
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+ // TODO: CoordinationType.ADDITIONAL_FEATURE_SETS,
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+ CoordinationType.TOOLTIPS_VISIBLE,
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+ CoordinationType.ADDITIONAL_OBS_SETS,
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+ CoordinationType.OBS_SET_COLOR,
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+ CoordinationType.SAMPLE_SET_COLOR,
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+ CoordinationType.FEATURE_POINT_SIGNIFICANCE_THRESHOLD,
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+ CoordinationType.FEATURE_LABEL_SIGNIFICANCE_THRESHOLD,
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+ CoordinationType.FEATURE_POINT_FOLD_CHANGE_THRESHOLD,
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+ CoordinationType.FEATURE_LABEL_FOLD_CHANGE_THRESHOLD,
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+ ],
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  [ViewType.OBS_SET_COMPOSITION_BAR_PLOT]: [
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  CoordinationType.DATASET,
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  CoordinationType.OBS_TYPE,
@@ -577,6 +604,13 @@ export const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.OBS_SET_SELECTION,
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  CoordinationType.OBS_SET_FILTER,
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  ],
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+ [ViewType.SAMPLE_SET_PAIR_MANAGER]: [
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+ CoordinationType.DATASET,
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+ CoordinationType.OBS_TYPE,
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+ CoordinationType.SAMPLE_TYPE,
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+ CoordinationType.SAMPLE_SET_SELECTION,
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+ CoordinationType.SAMPLE_SET_FILTER,
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+ ],
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  [ViewType.TREEMAP]: [
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  CoordinationType.DATASET,
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  CoordinationType.OBS_TYPE,
package/dist-tsc/version.json CHANGED
@@ -1,7 +1,7 @@
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1
  {
2
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  "note": "This file is autogenerated by .changeset/post-changelog.mjs.",
3
- "version": "3.5.8",
4
- "date": "2025-03-06",
3
+ "version": "3.5.10",
4
+ "date": "2025-03-27",
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5
  "branch": "changeset-release/main",
6
- "hash": "9066c55a"
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+ "hash": "17431b4f"
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  }
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
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  "name": "@vitessce/constants-internal",
3
- "version": "3.5.8",
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+ "version": "3.5.10",
4
4
  "author": "HIDIVE Lab at HMS",
5
5
  "homepage": "http://vitessce.io",
6
6
  "repository": {
package/src/constants.ts CHANGED
@@ -30,6 +30,8 @@ export const ViewType = {
30
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  NEUROGLANCER: 'neuroglancer',
31
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  DUAL_SCATTERPLOT: 'dualScatterplot',
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  TREEMAP: 'treemap',
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+ SAMPLE_SET_PAIR_MANAGER: 'sampleSetPairManager',
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+ FEATURE_STATS_TABLE: 'featureStatsTable',
33
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  };
34
36
 
35
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  export const DataType = {
@@ -392,4 +394,6 @@ export const ViewHelpMapping = {
392
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  VOLCANO_PLOT: 'The volcano plot displays differential expression results. Each data point represents a feature (as opposed to an observation).',
393
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  OBS_SET_COMPOSITION_BAR_PLOT: 'The set composition bar plot displays the results of a compositional analysis conducted using the scCODA method (Büttner et al. 2021 Nature Communications).',
394
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  FEATURE_SET_ENRICHMENT_BAR_PLOT: 'The feature set enrichment bar plot displays the results of a hypergeometric test applied to the differential expression test results to identify enriched pathway gene sets.',
397
+ SAMPLE_SET_PAIR_MANAGER: 'Select pairs of sample groups.',
398
+ FEATURE_STATS_TABLE: 'This table displays per-feature statistics, for example, from a differential expression test.',
395
399
  };
package/src/coordination.ts CHANGED
@@ -531,6 +531,33 @@ export const COMPONENT_COORDINATION_TYPES = {
531
531
  CoordinationType.FEATURE_POINT_FOLD_CHANGE_THRESHOLD,
532
532
  CoordinationType.FEATURE_LABEL_FOLD_CHANGE_THRESHOLD,
533
533
  ],
534
+ [ViewType.FEATURE_STATS_TABLE]: [
535
+ CoordinationType.DATASET,
536
+ CoordinationType.OBS_TYPE,
537
+ CoordinationType.FEATURE_TYPE,
538
+ CoordinationType.SAMPLE_TYPE,
539
+ // For selection of case-control sets of samples:
540
+ CoordinationType.SAMPLE_SET_SELECTION,
541
+ // For selection of one-vs-others sets of observations:
542
+ CoordinationType.OBS_SET_SELECTION,
543
+ // TODO: CoordinationType.FEATURE_SET_SELECTION,
544
+ // TODO: CoordinationType.FEATURE_SET_HIGHLIGHT,
545
+ // TODO: CoordinationType.FEATURE_SET_COLOR,
546
+ CoordinationType.FEATURE_HIGHLIGHT,
547
+ CoordinationType.FEATURE_SELECTION,
548
+ CoordinationType.FEATURE_VALUE_COLORMAP,
549
+ CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
550
+ // TODO: CoordinationType.FEATURE_COLOR_ENCODING,
551
+ // TODO: CoordinationType.ADDITIONAL_FEATURE_SETS,
552
+ CoordinationType.TOOLTIPS_VISIBLE,
553
+ CoordinationType.ADDITIONAL_OBS_SETS,
554
+ CoordinationType.OBS_SET_COLOR,
555
+ CoordinationType.SAMPLE_SET_COLOR,
556
+ CoordinationType.FEATURE_POINT_SIGNIFICANCE_THRESHOLD,
557
+ CoordinationType.FEATURE_LABEL_SIGNIFICANCE_THRESHOLD,
558
+ CoordinationType.FEATURE_POINT_FOLD_CHANGE_THRESHOLD,
559
+ CoordinationType.FEATURE_LABEL_FOLD_CHANGE_THRESHOLD,
560
+ ],
534
561
  [ViewType.OBS_SET_COMPOSITION_BAR_PLOT]: [
535
562
  CoordinationType.DATASET,
536
563
  CoordinationType.OBS_TYPE,
@@ -579,6 +606,13 @@ export const COMPONENT_COORDINATION_TYPES = {
579
606
  CoordinationType.OBS_SET_SELECTION,
580
607
  CoordinationType.OBS_SET_FILTER,
581
608
  ],
609
+ [ViewType.SAMPLE_SET_PAIR_MANAGER]: [
610
+ CoordinationType.DATASET,
611
+ CoordinationType.OBS_TYPE,
612
+ CoordinationType.SAMPLE_TYPE,
613
+ CoordinationType.SAMPLE_SET_SELECTION,
614
+ CoordinationType.SAMPLE_SET_FILTER,
615
+ ],
582
616
  [ViewType.TREEMAP]: [
583
617
  CoordinationType.DATASET,
584
618
  CoordinationType.OBS_TYPE,
package/src/version.json CHANGED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "note": "This file is autogenerated by .changeset/post-changelog.mjs.",
3
- "version": "3.5.8",
4
- "date": "2025-03-06",
3
+ "version": "3.5.10",
4
+ "date": "2025-03-27",
5
5
  "branch": "changeset-release/main",
6
- "hash": "9066c55a"
6
+ "hash": "17431b4f"
7
7
  }