@vitessce/constants-internal 3.5.6 → 3.5.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (14) hide show
  1. package/dist/index.js +45 -6
  2. package/dist-tsc/constant-relationships.d.ts.map +1 -1
  3. package/dist-tsc/constant-relationships.js +5 -0
  4. package/dist-tsc/constants.d.ts +7 -0
  5. package/dist-tsc/constants.d.ts.map +1 -1
  6. package/dist-tsc/constants.js +8 -0
  7. package/dist-tsc/coordination.d.ts.map +1 -1
  8. package/dist-tsc/coordination.js +26 -0
  9. package/dist-tsc/version.json +3 -3
  10. package/package.json +1 -1
  11. package/src/constant-relationships.ts +5 -0
  12. package/src/constants.ts +8 -0
  13. package/src/coordination.ts +26 -0
  14. package/src/version.json +3 -3
package/dist/index.js CHANGED
@@ -18,7 +18,8 @@ const ViewType = {
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  FEATURE_BAR_PLOT: "featureBarPlot",
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  BIOMARKER_SELECT: "biomarkerSelect",
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  LINK_CONTROLLER: "linkController",
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- DUAL_SCATTERPLOT: "dualScatterplot"
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+ DUAL_SCATTERPLOT: "dualScatterplot",
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+ TREEMAP: "treemap"
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  };
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  const DataType = {
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  OBS_LABELS: "obsLabels",
@@ -94,6 +95,7 @@ const FileType = {
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  OBS_LABELS_ANNDATA_ZARR: "obsLabels.anndata.zarr",
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  FEATURE_LABELS_ANNDATA_ZARR: "featureLabels.anndata.zarr",
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  SAMPLE_EDGES_ANNDATA_ZARR: "sampleEdges.anndata.zarr",
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+ SAMPLE_SETS_ANNDATA_ZARR: "sampleSets.anndata.zarr",
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  // AnnData - zipped
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  OBS_FEATURE_MATRIX_ANNDATA_ZARR_ZIP: "obsFeatureMatrix.anndata.zarr.zip",
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  OBS_FEATURE_COLUMNS_ANNDATA_ZARR_ZIP: "obsFeatureColumns.anndata.zarr.zip",
@@ -106,6 +108,7 @@ const FileType = {
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  OBS_LABELS_ANNDATA_ZARR_ZIP: "obsLabels.anndata.zarr.zip",
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  FEATURE_LABELS_ANNDATA_ZARR_ZIP: "featureLabels.anndata.zarr.zip",
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  SAMPLE_EDGES_ANNDATA_ZARR_ZIP: "sampleEdges.anndata.zarr.zip",
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+ SAMPLE_SETS_ANNDATA_ZARR_ZIP: "sampleSets.anndata.zarr.zip",
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  // AnnData - h5ad via reference spec
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  OBS_FEATURE_MATRIX_ANNDATA_H5AD: "obsFeatureMatrix.anndata.h5ad",
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  OBS_FEATURE_COLUMNS_ANNDATA_H5AD: "obsFeatureColumns.anndata.h5ad",
@@ -118,6 +121,7 @@ const FileType = {
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  OBS_LABELS_ANNDATA_H5AD: "obsLabels.anndata.h5ad",
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  FEATURE_LABELS_ANNDATA_H5AD: "featureLabels.anndata.h5ad",
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  SAMPLE_EDGES_ANNDATA_H5AD: "sampleEdges.anndata.h5ad",
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+ SAMPLE_SETS_ANNDATA_H5AD: "sampleSets.anndata.h5ad",
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  // SpatialData
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  IMAGE_SPATIALDATA_ZARR: "image.spatialdata.zarr",
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  LABELS_SPATIALDATA_ZARR: "labels.spatialdata.zarr",
@@ -309,12 +313,15 @@ const CoordinationType = {
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  SAMPLE_SET_FILTER: "sampleSetFilter",
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  SAMPLE_FILTER_MODE: "sampleFilterMode",
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  SAMPLE_SET_COLOR: "sampleSetColor",
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+ SAMPLE_HIGHLIGHT: "sampleHighlight",
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  EMBEDDING_POINTS_VISIBLE: "embeddingPointsVisible",
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  EMBEDDING_CONTOURS_VISIBLE: "embeddingContoursVisible",
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  EMBEDDING_CONTOURS_FILLED: "embeddingContoursFilled",
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  EMBEDDING_CONTOUR_PERCENTILES: "embeddingContourPercentiles",
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  CONTOUR_COLOR_ENCODING: "contourColorEncoding",
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- CONTOUR_COLOR: "contourColor"
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+ CONTOUR_COLOR: "contourColor",
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+ // Treemap
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+ HIERARCHY_LEVELS: "hierarchyLevels"
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  };
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  const STATUS = {
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  LOADING: "loading",
@@ -340,7 +347,8 @@ const ViewHelpMapping = {
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  OBS_SET_FEATURE_VALUE_DISTRIBUTION: "The observation set feature value distribution view displays a violin plot with values (e.g., expression values) per set (e.g., cell type) for the selected feature (e.g., gene).",
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  FEATURE_VALUE_HISTOGRAM: "The feature value histogram displays the distribution of values (e.g., expression) for the selected feature (e.g., gene).",
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  DOT_PLOT: "The dot plot displays summary information about expression of the selected features (e.g., genes) for each selected observation set (e.g., cell type).",
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- FEATURE_BAR_PLOT: "The feature bar plot displays one bar per observation (e.g., cell) along the x-axis, where the value of a selected feature (e.g., gene) is encoded along the y-axis."
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+ FEATURE_BAR_PLOT: "The feature bar plot displays one bar per observation (e.g., cell) along the x-axis, where the value of a selected feature (e.g., gene) is encoded along the y-axis.",
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+ TREEMAP: "The treemap provides an overview of the current state of sample-level or cell-level selection and filtering."
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  };
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  const FILE_TYPE_DATA_TYPE_MAPPING = {
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  // For new file types
@@ -368,6 +376,7 @@ const FILE_TYPE_DATA_TYPE_MAPPING = {
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  [FileType.OBS_LABELS_ANNDATA_ZARR]: DataType.OBS_LABELS,
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  [FileType.FEATURE_LABELS_ANNDATA_ZARR]: DataType.FEATURE_LABELS,
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  [FileType.SAMPLE_EDGES_ANNDATA_ZARR]: DataType.SAMPLE_EDGES,
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+ [FileType.SAMPLE_SETS_ANNDATA_ZARR]: DataType.SAMPLE_SETS,
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  [FileType.IMAGE_OME_TIFF]: DataType.IMAGE,
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  [FileType.OBS_SEGMENTATIONS_OME_TIFF]: DataType.OBS_SEGMENTATIONS,
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  [FileType.OBS_FEATURE_MATRIX_MUDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
@@ -496,6 +505,10 @@ const ALT_ZARR_STORE_TYPES = {
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  zip: FileType.SAMPLE_EDGES_ANNDATA_ZARR_ZIP,
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  h5ad: FileType.SAMPLE_EDGES_ANNDATA_H5AD
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  },
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+ [FileType.SAMPLE_SETS_ANNDATA_ZARR]: {
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+ zip: FileType.SAMPLE_SETS_ANNDATA_ZARR_ZIP,
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+ h5ad: FileType.SAMPLE_SETS_ANNDATA_H5AD
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+ },
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  // For OME-Zarr:
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  [FileType.IMAGE_OME_ZARR]: {
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  zip: FileType.IMAGE_OME_ZARR_ZIP
@@ -997,13 +1010,39 @@ const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.OBS_SET_SELECTION,
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  CoordinationType.OBS_SET_FILTER
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  // TODO: create coordination types for internal state of the biomarker selection view?
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+ ],
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+ [ViewType.TREEMAP]: [
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+ CoordinationType.DATASET,
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+ CoordinationType.OBS_TYPE,
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+ CoordinationType.FEATURE_TYPE,
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+ CoordinationType.FEATURE_VALUE_TYPE,
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+ CoordinationType.OBS_FILTER,
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+ CoordinationType.OBS_HIGHLIGHT,
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+ CoordinationType.OBS_SET_SELECTION,
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+ CoordinationType.OBS_SET_FILTER,
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+ CoordinationType.OBS_SELECTION,
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+ CoordinationType.OBS_SELECTION_MODE,
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+ CoordinationType.OBS_SET_HIGHLIGHT,
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+ CoordinationType.OBS_SET_COLOR,
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+ CoordinationType.OBS_COLOR_ENCODING,
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+ CoordinationType.ADDITIONAL_OBS_SETS,
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+ CoordinationType.SAMPLE_TYPE,
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+ CoordinationType.SAMPLE_SET_SELECTION,
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+ CoordinationType.SAMPLE_SET_FILTER,
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+ CoordinationType.SAMPLE_SET_COLOR,
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+ CoordinationType.SAMPLE_SELECTION,
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+ CoordinationType.SAMPLE_SELECTION_MODE,
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+ CoordinationType.SAMPLE_FILTER,
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+ CoordinationType.SAMPLE_FILTER_MODE,
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+ CoordinationType.SAMPLE_HIGHLIGHT,
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+ CoordinationType.HIERARCHY_LEVELS
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  ]
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  };
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  const note = "This file is autogenerated by .changeset/post-changelog.mjs.";
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- const version = "3.5.6";
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- const date = "2025-01-29";
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+ const version = "3.5.7";
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+ const date = "2025-02-19";
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  const branch = "changeset-release/main";
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- const hash = "c8eedf07";
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+ const hash = "a4bc3a6a";
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  const version$1 = {
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  note,
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  version,
package/dist-tsc/constant-relationships.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"constant-relationships.d.ts","sourceRoot":"","sources":["../src/constant-relationships.ts"],"names":[],"mappings":"AAEA;;;;GAIG;AACH,eAAO,MAAM,2BAA2B;;CA+DvC,CAAC;AAEF;;;;GAIG;AACH,eAAO,MAAM,kCAAkC;;CA6C9C,CAAC;AAKF,eAAO,MAAM,oBAAoB;;;;;;;;CAqDhC,CAAC"}
1
+ {"version":3,"file":"constant-relationships.d.ts","sourceRoot":"","sources":["../src/constant-relationships.ts"],"names":[],"mappings":"AAEA;;;;GAIG;AACH,eAAO,MAAM,2BAA2B;;CAgEvC,CAAC;AAEF;;;;GAIG;AACH,eAAO,MAAM,kCAAkC;;CA6C9C,CAAC;AAKF,eAAO,MAAM,oBAAoB;;;;;;;;CAyDhC,CAAC"}
package/dist-tsc/constant-relationships.js CHANGED
@@ -30,6 +30,7 @@ export const FILE_TYPE_DATA_TYPE_MAPPING = {
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  [FileType.OBS_LABELS_ANNDATA_ZARR]: DataType.OBS_LABELS,
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  [FileType.FEATURE_LABELS_ANNDATA_ZARR]: DataType.FEATURE_LABELS,
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  [FileType.SAMPLE_EDGES_ANNDATA_ZARR]: DataType.SAMPLE_EDGES,
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+ [FileType.SAMPLE_SETS_ANNDATA_ZARR]: DataType.SAMPLE_SETS,
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  [FileType.IMAGE_OME_TIFF]: DataType.IMAGE,
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  [FileType.OBS_SEGMENTATIONS_OME_TIFF]: DataType.OBS_SEGMENTATIONS,
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  [FileType.OBS_FEATURE_MATRIX_MUDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
@@ -166,6 +167,10 @@ export const ALT_ZARR_STORE_TYPES = {
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  zip: FileType.SAMPLE_EDGES_ANNDATA_ZARR_ZIP,
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  h5ad: FileType.SAMPLE_EDGES_ANNDATA_H5AD,
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  },
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+ [FileType.SAMPLE_SETS_ANNDATA_ZARR]: {
171
+ zip: FileType.SAMPLE_SETS_ANNDATA_ZARR_ZIP,
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+ h5ad: FileType.SAMPLE_SETS_ANNDATA_H5AD,
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+ },
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  // For OME-Zarr:
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  [FileType.IMAGE_OME_ZARR]: {
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  zip: FileType.IMAGE_OME_ZARR_ZIP,
package/dist-tsc/constants.d.ts CHANGED
@@ -24,6 +24,7 @@ export declare const ViewType: {
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  BIOMARKER_SELECT: string;
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  LINK_CONTROLLER: string;
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  DUAL_SCATTERPLOT: string;
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+ TREEMAP: string;
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  };
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  export declare const DataType: {
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  OBS_LABELS: string;
@@ -83,6 +84,7 @@ export declare const FileType: {
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  OBS_LABELS_ANNDATA_ZARR: string;
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  FEATURE_LABELS_ANNDATA_ZARR: string;
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  SAMPLE_EDGES_ANNDATA_ZARR: string;
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+ SAMPLE_SETS_ANNDATA_ZARR: string;
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  OBS_FEATURE_MATRIX_ANNDATA_ZARR_ZIP: string;
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  OBS_FEATURE_COLUMNS_ANNDATA_ZARR_ZIP: string;
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  OBS_SETS_ANNDATA_ZARR_ZIP: string;
@@ -94,6 +96,7 @@ export declare const FileType: {
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  OBS_LABELS_ANNDATA_ZARR_ZIP: string;
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  FEATURE_LABELS_ANNDATA_ZARR_ZIP: string;
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  SAMPLE_EDGES_ANNDATA_ZARR_ZIP: string;
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+ SAMPLE_SETS_ANNDATA_ZARR_ZIP: string;
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  OBS_FEATURE_MATRIX_ANNDATA_H5AD: string;
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  OBS_FEATURE_COLUMNS_ANNDATA_H5AD: string;
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  OBS_SETS_ANNDATA_H5AD: string;
@@ -105,6 +108,7 @@ export declare const FileType: {
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  OBS_LABELS_ANNDATA_H5AD: string;
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  FEATURE_LABELS_ANNDATA_H5AD: string;
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  SAMPLE_EDGES_ANNDATA_H5AD: string;
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+ SAMPLE_SETS_ANNDATA_H5AD: string;
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  IMAGE_SPATIALDATA_ZARR: string;
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  LABELS_SPATIALDATA_ZARR: string;
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  SHAPES_SPATIALDATA_ZARR: string;
@@ -272,12 +276,14 @@ export declare const CoordinationType: {
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  SAMPLE_SET_FILTER: string;
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  SAMPLE_FILTER_MODE: string;
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  SAMPLE_SET_COLOR: string;
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+ SAMPLE_HIGHLIGHT: string;
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  EMBEDDING_POINTS_VISIBLE: string;
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  EMBEDDING_CONTOURS_VISIBLE: string;
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  EMBEDDING_CONTOURS_FILLED: string;
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  EMBEDDING_CONTOUR_PERCENTILES: string;
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  CONTOUR_COLOR_ENCODING: string;
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  CONTOUR_COLOR: string;
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+ HIERARCHY_LEVELS: string;
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  };
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  export declare const STATUS: {
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  LOADING: string;
@@ -308,5 +314,6 @@ export declare const ViewHelpMapping: {
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  FEATURE_VALUE_HISTOGRAM: string;
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  DOT_PLOT: string;
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  FEATURE_BAR_PLOT: string;
317
+ TREEMAP: string;
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  };
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  //# sourceMappingURL=constants.d.ts.map
package/dist-tsc/constants.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;CAqBpB,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;CAepB,CAAC;AAEF,eAAO,MAAM,iBAAiB;;;;;;;;;;CAc7B,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAwHpB,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAmI5B,CAAC;AAEF,eAAO,MAAM,MAAM;;;;CAIlB,CAAC;AAEF,eAAO,MAAM,eAAe;;;CAG3B,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;CAgB3B,CAAC"}
1
+ {"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;CAsBpB,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;CAepB,CAAC;AAEF,eAAO,MAAM,iBAAiB;;;;;;;;;;CAc7B,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CA2HpB,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAsI5B,CAAC;AAEF,eAAO,MAAM,MAAM;;;;CAIlB,CAAC;AAEF,eAAO,MAAM,eAAe;;;CAG3B,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;CAiB3B,CAAC"}
package/dist-tsc/constants.js CHANGED
@@ -24,6 +24,7 @@ export const ViewType = {
24
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  BIOMARKER_SELECT: 'biomarkerSelect',
25
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  LINK_CONTROLLER: 'linkController',
26
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  DUAL_SCATTERPLOT: 'dualScatterplot',
27
+ TREEMAP: 'treemap',
27
28
  };
28
29
  export const DataType = {
29
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  OBS_LABELS: 'obsLabels',
@@ -90,6 +91,7 @@ export const FileType = {
90
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  OBS_LABELS_ANNDATA_ZARR: 'obsLabels.anndata.zarr',
91
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  FEATURE_LABELS_ANNDATA_ZARR: 'featureLabels.anndata.zarr',
92
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  SAMPLE_EDGES_ANNDATA_ZARR: 'sampleEdges.anndata.zarr',
94
+ SAMPLE_SETS_ANNDATA_ZARR: 'sampleSets.anndata.zarr',
93
95
  // AnnData - zipped
94
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  OBS_FEATURE_MATRIX_ANNDATA_ZARR_ZIP: 'obsFeatureMatrix.anndata.zarr.zip',
95
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  OBS_FEATURE_COLUMNS_ANNDATA_ZARR_ZIP: 'obsFeatureColumns.anndata.zarr.zip',
@@ -102,6 +104,7 @@ export const FileType = {
102
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  OBS_LABELS_ANNDATA_ZARR_ZIP: 'obsLabels.anndata.zarr.zip',
103
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  FEATURE_LABELS_ANNDATA_ZARR_ZIP: 'featureLabels.anndata.zarr.zip',
104
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  SAMPLE_EDGES_ANNDATA_ZARR_ZIP: 'sampleEdges.anndata.zarr.zip',
107
+ SAMPLE_SETS_ANNDATA_ZARR_ZIP: 'sampleSets.anndata.zarr.zip',
105
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  // AnnData - h5ad via reference spec
106
109
  OBS_FEATURE_MATRIX_ANNDATA_H5AD: 'obsFeatureMatrix.anndata.h5ad',
107
110
  OBS_FEATURE_COLUMNS_ANNDATA_H5AD: 'obsFeatureColumns.anndata.h5ad',
@@ -114,6 +117,7 @@ export const FileType = {
114
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  OBS_LABELS_ANNDATA_H5AD: 'obsLabels.anndata.h5ad',
115
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  FEATURE_LABELS_ANNDATA_H5AD: 'featureLabels.anndata.h5ad',
116
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  SAMPLE_EDGES_ANNDATA_H5AD: 'sampleEdges.anndata.h5ad',
120
+ SAMPLE_SETS_ANNDATA_H5AD: 'sampleSets.anndata.h5ad',
117
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  // SpatialData
118
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  IMAGE_SPATIALDATA_ZARR: 'image.spatialdata.zarr',
119
123
  LABELS_SPATIALDATA_ZARR: 'labels.spatialdata.zarr',
@@ -304,12 +308,15 @@ export const CoordinationType = {
304
308
  SAMPLE_SET_FILTER: 'sampleSetFilter',
305
309
  SAMPLE_FILTER_MODE: 'sampleFilterMode',
306
310
  SAMPLE_SET_COLOR: 'sampleSetColor',
311
+ SAMPLE_HIGHLIGHT: 'sampleHighlight',
307
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  EMBEDDING_POINTS_VISIBLE: 'embeddingPointsVisible',
308
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  EMBEDDING_CONTOURS_VISIBLE: 'embeddingContoursVisible',
309
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  EMBEDDING_CONTOURS_FILLED: 'embeddingContoursFilled',
310
315
  EMBEDDING_CONTOUR_PERCENTILES: 'embeddingContourPercentiles',
311
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  CONTOUR_COLOR_ENCODING: 'contourColorEncoding',
312
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  CONTOUR_COLOR: 'contourColor',
318
+ // Treemap
319
+ HIERARCHY_LEVELS: 'hierarchyLevels',
313
320
  };
314
321
  export const STATUS = {
315
322
  LOADING: 'loading',
@@ -340,4 +347,5 @@ export const ViewHelpMapping = {
340
347
  FEATURE_VALUE_HISTOGRAM: 'The feature value histogram displays the distribution of values (e.g., expression) for the selected feature (e.g., gene).',
341
348
  DOT_PLOT: 'The dot plot displays summary information about expression of the selected features (e.g., genes) for each selected observation set (e.g., cell type).',
342
349
  FEATURE_BAR_PLOT: 'The feature bar plot displays one bar per observation (e.g., cell) along the x-axis, where the value of a selected feature (e.g., gene) is encoded along the y-axis.',
350
+ TREEMAP: 'The treemap provides an overview of the current state of sample-level or cell-level selection and filtering.',
343
351
  };
package/dist-tsc/coordination.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"coordination.d.ts","sourceRoot":"","sources":["../src/coordination.ts"],"names":[],"mappings":"AASA,eAAO,MAAM,mCAAmC,UAc/C,CAAC;AAEF;;;;;;;KAOK;AACL,eAAO,MAAM,4BAA4B;;;CA+dxC,CAAC"}
1
+ {"version":3,"file":"coordination.d.ts","sourceRoot":"","sources":["../src/coordination.ts"],"names":[],"mappings":"AASA,eAAO,MAAM,mCAAmC,UAc/C,CAAC;AAEF;;;;;;;KAOK;AACL,eAAO,MAAM,4BAA4B;;;CAyfxC,CAAC"}
package/dist-tsc/coordination.js CHANGED
@@ -508,4 +508,30 @@ export const COMPONENT_COORDINATION_TYPES = {
508
508
  CoordinationType.OBS_SET_FILTER,
509
509
  // TODO: create coordination types for internal state of the biomarker selection view?
510
510
  ],
511
+ [ViewType.TREEMAP]: [
512
+ CoordinationType.DATASET,
513
+ CoordinationType.OBS_TYPE,
514
+ CoordinationType.FEATURE_TYPE,
515
+ CoordinationType.FEATURE_VALUE_TYPE,
516
+ CoordinationType.OBS_FILTER,
517
+ CoordinationType.OBS_HIGHLIGHT,
518
+ CoordinationType.OBS_SET_SELECTION,
519
+ CoordinationType.OBS_SET_FILTER,
520
+ CoordinationType.OBS_SELECTION,
521
+ CoordinationType.OBS_SELECTION_MODE,
522
+ CoordinationType.OBS_SET_HIGHLIGHT,
523
+ CoordinationType.OBS_SET_COLOR,
524
+ CoordinationType.OBS_COLOR_ENCODING,
525
+ CoordinationType.ADDITIONAL_OBS_SETS,
526
+ CoordinationType.SAMPLE_TYPE,
527
+ CoordinationType.SAMPLE_SET_SELECTION,
528
+ CoordinationType.SAMPLE_SET_FILTER,
529
+ CoordinationType.SAMPLE_SET_COLOR,
530
+ CoordinationType.SAMPLE_SELECTION,
531
+ CoordinationType.SAMPLE_SELECTION_MODE,
532
+ CoordinationType.SAMPLE_FILTER,
533
+ CoordinationType.SAMPLE_FILTER_MODE,
534
+ CoordinationType.SAMPLE_HIGHLIGHT,
535
+ CoordinationType.HIERARCHY_LEVELS,
536
+ ],
511
537
  };
package/dist-tsc/version.json CHANGED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "note": "This file is autogenerated by .changeset/post-changelog.mjs.",
3
- "version": "3.5.6",
4
- "date": "2025-01-29",
3
+ "version": "3.5.7",
4
+ "date": "2025-02-19",
5
5
  "branch": "changeset-release/main",
6
- "hash": "c8eedf07"
6
+ "hash": "a4bc3a6a"
7
7
  }
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@vitessce/constants-internal",
3
- "version": "3.5.6",
3
+ "version": "3.5.7",
4
4
  "author": "HIDIVE Lab at HMS",
5
5
  "homepage": "http://vitessce.io",
6
6
  "repository": {
package/src/constant-relationships.ts CHANGED
@@ -31,6 +31,7 @@ export const FILE_TYPE_DATA_TYPE_MAPPING = {
31
31
  [FileType.OBS_LABELS_ANNDATA_ZARR]: DataType.OBS_LABELS,
32
32
  [FileType.FEATURE_LABELS_ANNDATA_ZARR]: DataType.FEATURE_LABELS,
33
33
  [FileType.SAMPLE_EDGES_ANNDATA_ZARR]: DataType.SAMPLE_EDGES,
34
+ [FileType.SAMPLE_SETS_ANNDATA_ZARR]: DataType.SAMPLE_SETS,
34
35
  [FileType.IMAGE_OME_TIFF]: DataType.IMAGE,
35
36
  [FileType.OBS_SEGMENTATIONS_OME_TIFF]: DataType.OBS_SEGMENTATIONS,
36
37
  [FileType.OBS_FEATURE_MATRIX_MUDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
@@ -171,6 +172,10 @@ export const ALT_ZARR_STORE_TYPES = {
171
172
  zip: FileType.SAMPLE_EDGES_ANNDATA_ZARR_ZIP,
172
173
  h5ad: FileType.SAMPLE_EDGES_ANNDATA_H5AD,
173
174
  },
175
+ [FileType.SAMPLE_SETS_ANNDATA_ZARR]: {
176
+ zip: FileType.SAMPLE_SETS_ANNDATA_ZARR_ZIP,
177
+ h5ad: FileType.SAMPLE_SETS_ANNDATA_H5AD,
178
+ },
174
179
  // For OME-Zarr:
175
180
  [FileType.IMAGE_OME_ZARR]: {
176
181
  zip: FileType.IMAGE_OME_ZARR_ZIP,
package/src/constants.ts CHANGED
@@ -24,6 +24,7 @@ export const ViewType = {
24
24
  BIOMARKER_SELECT: 'biomarkerSelect',
25
25
  LINK_CONTROLLER: 'linkController',
26
26
  DUAL_SCATTERPLOT: 'dualScatterplot',
27
+ TREEMAP: 'treemap',
27
28
  };
28
29
 
29
30
  export const DataType = {
@@ -95,6 +96,7 @@ export const FileType = {
95
96
  OBS_LABELS_ANNDATA_ZARR: 'obsLabels.anndata.zarr',
96
97
  FEATURE_LABELS_ANNDATA_ZARR: 'featureLabels.anndata.zarr',
97
98
  SAMPLE_EDGES_ANNDATA_ZARR: 'sampleEdges.anndata.zarr',
99
+ SAMPLE_SETS_ANNDATA_ZARR: 'sampleSets.anndata.zarr',
98
100
  // AnnData - zipped
99
101
  OBS_FEATURE_MATRIX_ANNDATA_ZARR_ZIP: 'obsFeatureMatrix.anndata.zarr.zip',
100
102
  OBS_FEATURE_COLUMNS_ANNDATA_ZARR_ZIP: 'obsFeatureColumns.anndata.zarr.zip',
@@ -107,6 +109,7 @@ export const FileType = {
107
109
  OBS_LABELS_ANNDATA_ZARR_ZIP: 'obsLabels.anndata.zarr.zip',
108
110
  FEATURE_LABELS_ANNDATA_ZARR_ZIP: 'featureLabels.anndata.zarr.zip',
109
111
  SAMPLE_EDGES_ANNDATA_ZARR_ZIP: 'sampleEdges.anndata.zarr.zip',
112
+ SAMPLE_SETS_ANNDATA_ZARR_ZIP: 'sampleSets.anndata.zarr.zip',
110
113
  // AnnData - h5ad via reference spec
111
114
  OBS_FEATURE_MATRIX_ANNDATA_H5AD: 'obsFeatureMatrix.anndata.h5ad',
112
115
  OBS_FEATURE_COLUMNS_ANNDATA_H5AD: 'obsFeatureColumns.anndata.h5ad',
@@ -119,6 +122,7 @@ export const FileType = {
119
122
  OBS_LABELS_ANNDATA_H5AD: 'obsLabels.anndata.h5ad',
120
123
  FEATURE_LABELS_ANNDATA_H5AD: 'featureLabels.anndata.h5ad',
121
124
  SAMPLE_EDGES_ANNDATA_H5AD: 'sampleEdges.anndata.h5ad',
125
+ SAMPLE_SETS_ANNDATA_H5AD: 'sampleSets.anndata.h5ad',
122
126
  // SpatialData
123
127
  IMAGE_SPATIALDATA_ZARR: 'image.spatialdata.zarr',
124
128
  LABELS_SPATIALDATA_ZARR: 'labels.spatialdata.zarr',
@@ -310,12 +314,15 @@ export const CoordinationType = {
310
314
  SAMPLE_SET_FILTER: 'sampleSetFilter',
311
315
  SAMPLE_FILTER_MODE: 'sampleFilterMode',
312
316
  SAMPLE_SET_COLOR: 'sampleSetColor',
317
+ SAMPLE_HIGHLIGHT: 'sampleHighlight',
313
318
  EMBEDDING_POINTS_VISIBLE: 'embeddingPointsVisible',
314
319
  EMBEDDING_CONTOURS_VISIBLE: 'embeddingContoursVisible',
315
320
  EMBEDDING_CONTOURS_FILLED: 'embeddingContoursFilled',
316
321
  EMBEDDING_CONTOUR_PERCENTILES: 'embeddingContourPercentiles',
317
322
  CONTOUR_COLOR_ENCODING: 'contourColorEncoding',
318
323
  CONTOUR_COLOR: 'contourColor',
324
+ // Treemap
325
+ HIERARCHY_LEVELS: 'hierarchyLevels',
319
326
  };
320
327
 
321
328
  export const STATUS = {
@@ -349,4 +356,5 @@ export const ViewHelpMapping = {
349
356
  FEATURE_VALUE_HISTOGRAM: 'The feature value histogram displays the distribution of values (e.g., expression) for the selected feature (e.g., gene).',
350
357
  DOT_PLOT: 'The dot plot displays summary information about expression of the selected features (e.g., genes) for each selected observation set (e.g., cell type).',
351
358
  FEATURE_BAR_PLOT: 'The feature bar plot displays one bar per observation (e.g., cell) along the x-axis, where the value of a selected feature (e.g., gene) is encoded along the y-axis.',
359
+ TREEMAP: 'The treemap provides an overview of the current state of sample-level or cell-level selection and filtering.',
352
360
  };
package/src/coordination.ts CHANGED
@@ -510,4 +510,30 @@ export const COMPONENT_COORDINATION_TYPES = {
510
510
  CoordinationType.OBS_SET_FILTER,
511
511
  // TODO: create coordination types for internal state of the biomarker selection view?
512
512
  ],
513
+ [ViewType.TREEMAP]: [
514
+ CoordinationType.DATASET,
515
+ CoordinationType.OBS_TYPE,
516
+ CoordinationType.FEATURE_TYPE,
517
+ CoordinationType.FEATURE_VALUE_TYPE,
518
+ CoordinationType.OBS_FILTER,
519
+ CoordinationType.OBS_HIGHLIGHT,
520
+ CoordinationType.OBS_SET_SELECTION,
521
+ CoordinationType.OBS_SET_FILTER,
522
+ CoordinationType.OBS_SELECTION,
523
+ CoordinationType.OBS_SELECTION_MODE,
524
+ CoordinationType.OBS_SET_HIGHLIGHT,
525
+ CoordinationType.OBS_SET_COLOR,
526
+ CoordinationType.OBS_COLOR_ENCODING,
527
+ CoordinationType.ADDITIONAL_OBS_SETS,
528
+ CoordinationType.SAMPLE_TYPE,
529
+ CoordinationType.SAMPLE_SET_SELECTION,
530
+ CoordinationType.SAMPLE_SET_FILTER,
531
+ CoordinationType.SAMPLE_SET_COLOR,
532
+ CoordinationType.SAMPLE_SELECTION,
533
+ CoordinationType.SAMPLE_SELECTION_MODE,
534
+ CoordinationType.SAMPLE_FILTER,
535
+ CoordinationType.SAMPLE_FILTER_MODE,
536
+ CoordinationType.SAMPLE_HIGHLIGHT,
537
+ CoordinationType.HIERARCHY_LEVELS,
538
+ ],
513
539
  };
package/src/version.json CHANGED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "note": "This file is autogenerated by .changeset/post-changelog.mjs.",
3
- "version": "3.5.6",
4
- "date": "2025-01-29",
3
+ "version": "3.5.7",
4
+ "date": "2025-02-19",
5
5
  "branch": "changeset-release/main",
6
- "hash": "c8eedf07"
6
+ "hash": "a4bc3a6a"
7
7
  }