@vitessce/constants-internal 3.5.1 → 3.5.3

package/dist/index.js

@@ -16,7 +16,8 @@ const ViewType = {
   FEATURE_VALUE_HISTOGRAM: "featureValueHistogram",
   DOT_PLOT: "dotPlot",
   FEATURE_BAR_PLOT: "featureBarPlot",
-  BIOMARKER_SELECT: "biomarkerSelect"
+  BIOMARKER_SELECT: "biomarkerSelect",
+  LINK_CONTROLLER: "linkController"
 };
 const DataType = {
   OBS_LABELS: "obsLabels",
@@ -38,6 +39,10 @@ const AsyncFunctionType = {
   // String input (rather than Node input)
   AUTOCOMPLETE_FEATURE: "autocompleteFeature",
   // (partial: string, targetModality: null | 'gene' | 'protein' | 'genomic-region' | 'cell-type') -> list of feature nodes
+  GET_ALTERNATIVE_TERMS: "getAlternativeTerms",
+  // (curieString) -> list of alternative curie strings
+  GET_TERM_MAPPING: "getTermMapping",
+  // (keyCuriePrefix, valueCuriePrefix) -> Record<curieString, curieString> for key to value
   TRANSFORM_FEATURE: "transformFeature",
   // (featureNode, targetModality) -> list of feature nodes from target modality
   RELATED_FEATURES: "relatedFeatures",
@@ -916,6 +921,7 @@ const COMPONENT_COORDINATION_TYPES = {
     CoordinationType.OBS_COLOR_ENCODING,
     CoordinationType.ADDITIONAL_OBS_SETS
   ],
+  [ViewType.LINK_CONTROLLER]: [],
   [ViewType.BIOMARKER_SELECT]: [
     CoordinationType.FEATURE_SELECTION,
     CoordinationType.SAMPLE_SET_SELECTION
@@ -923,10 +929,10 @@ const COMPONENT_COORDINATION_TYPES = {
   ]
 };
 const note = "This file is autogenerated by .changeset/post-changelog.mjs.";
-const version = "3.5.1";
-const date = "2024-11-22";
+const version = "3.5.3";
+const date = "2025-01-14";
 const branch = "changeset-release/main";
-const hash = "233b667a";
+const hash = "681f7748";
 const version$1 = {
   note,
   version,
@@ -934,6 +940,39 @@ const version$1 = {
   branch,
   hash
 };
+const GLOBAL_LABELS = ["z", "t"];
+const DEFAULT_RASTER_DOMAIN_TYPE = "Min/Max";
+const DEFAULT_MOLECULES_LAYER = {
+  opacity: 1,
+  radius: 20,
+  visible: true
+};
+const DEFAULT_CELLS_LAYER = {
+  opacity: 1,
+  radius: 50,
+  visible: true,
+  stroked: false
+};
+const DEFAULT_NEIGHBORHOODS_LAYER = {
+  visible: false
+};
+const DEFAULT_LAYER_TYPE_ORDERING = [
+  "molecules",
+  "cells",
+  "neighborhoods",
+  "raster"
+];
+const DEFAULT_RASTER_LAYER_PROPS = {
+  visible: true,
+  colormap: null,
+  opacity: 1,
+  domainType: DEFAULT_RASTER_DOMAIN_TYPE,
+  transparentColor: [0, 0, 0],
+  // Importing the full viv package here would add a lot of weight to the bundle
+  renderingMode: "Additive",
+  // viv.RENDERING_MODES.ADDITIVE,
+  use3d: false
+};
 export {
   ALT_ZARR_STORE_TYPES,
   AUTO_INDEPENDENT_COORDINATION_TYPES,
@@ -941,10 +980,17 @@ export {
   COMPONENT_COORDINATION_TYPES,
   CoordinationType,
   DATA_TYPE_COORDINATION_VALUE_USAGE,
+  DEFAULT_CELLS_LAYER,
+  DEFAULT_LAYER_TYPE_ORDERING,
+  DEFAULT_MOLECULES_LAYER,
+  DEFAULT_NEIGHBORHOODS_LAYER,
+  DEFAULT_RASTER_DOMAIN_TYPE,
+  DEFAULT_RASTER_LAYER_PROPS,
   DataType,
   DescriptionType,
   FILE_TYPE_DATA_TYPE_MAPPING,
   FileType,
+  GLOBAL_LABELS,
   version$1 as META_VERSION,
   STATUS,
   ViewHelpMapping,

package/dist-tsc/constants.d.ts

@@ -22,6 +22,7 @@ export declare const ViewType: {
     DOT_PLOT: string;
     FEATURE_BAR_PLOT: string;
     BIOMARKER_SELECT: string;
+    LINK_CONTROLLER: string;
 };
 export declare const DataType: {
     OBS_LABELS: string;
@@ -41,6 +42,8 @@ export declare const DataType: {
 };
 export declare const AsyncFunctionType: {
     AUTOCOMPLETE_FEATURE: string;
+    GET_ALTERNATIVE_TERMS: string;
+    GET_TERM_MAPPING: string;
     TRANSFORM_FEATURE: string;
     RELATED_FEATURES: string;
     FEATURE_TO_URL: string;

package/dist-tsc/constants.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;CAmBpB,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;CAepB,CAAC;AAEF,eAAO,MAAM,iBAAiB;;;;;;;;CAY7B,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAwHpB,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAsH5B,CAAC;AAEF,eAAO,MAAM,MAAM;;;;CAIlB,CAAC;AAEF,eAAO,MAAM,eAAe;;;CAG3B,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;CAgB3B,CAAC"}
+{"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;CAoBpB,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;CAepB,CAAC;AAEF,eAAO,MAAM,iBAAiB;;;;;;;;;;CAc7B,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAwHpB,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAsH5B,CAAC;AAEF,eAAO,MAAM,MAAM;;;;CAIlB,CAAC;AAEF,eAAO,MAAM,eAAe;;;CAG3B,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;CAgB3B,CAAC"}

package/dist-tsc/constants.js

@@ -22,6 +22,7 @@ export const ViewType = {
     DOT_PLOT: 'dotPlot',
     FEATURE_BAR_PLOT: 'featureBarPlot',
     BIOMARKER_SELECT: 'biomarkerSelect',
+    LINK_CONTROLLER: 'linkController',
 };
 export const DataType = {
     OBS_LABELS: 'obsLabels',
@@ -42,6 +43,8 @@ export const DataType = {
 export const AsyncFunctionType = {
     // String input (rather than Node input)
     AUTOCOMPLETE_FEATURE: 'autocompleteFeature', // (partial: string, targetModality: null | 'gene' | 'protein' | 'genomic-region' | 'cell-type') -> list of feature nodes
+    GET_ALTERNATIVE_TERMS: 'getAlternativeTerms', // (curieString) -> list of alternative curie strings
+    GET_TERM_MAPPING: 'getTermMapping', // (keyCuriePrefix, valueCuriePrefix) -> Record<curieString, curieString> for key to value
     TRANSFORM_FEATURE: 'transformFeature', // (featureNode, targetModality) -> list of feature nodes from target modality
     RELATED_FEATURES: 'relatedFeatures', // (featureNode) -> list of related feature nodes
     FEATURE_TO_URL: 'featureToUrl', // (featureNode) -> URL

package/dist-tsc/coordination.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"coordination.d.ts","sourceRoot":"","sources":["../src/coordination.ts"],"names":[],"mappings":"AASA,eAAO,MAAM,mCAAmC,UAc/C,CAAC;AAEF;;;;;;;KAOK;AACL,eAAO,MAAM,4BAA4B;;;CAqaxC,CAAC"}
+{"version":3,"file":"coordination.d.ts","sourceRoot":"","sources":["../src/coordination.ts"],"names":[],"mappings":"AASA,eAAO,MAAM,mCAAmC,UAc/C,CAAC;AAEF;;;;;;;KAOK;AACL,eAAO,MAAM,4BAA4B;;;CAsaxC,CAAC"}

package/dist-tsc/coordination.js

@@ -445,6 +445,7 @@ export const COMPONENT_COORDINATION_TYPES = {
         CoordinationType.OBS_COLOR_ENCODING,
         CoordinationType.ADDITIONAL_OBS_SETS,
     ],
+    [ViewType.LINK_CONTROLLER]: [],
     [ViewType.BIOMARKER_SELECT]: [
         CoordinationType.FEATURE_SELECTION,
         CoordinationType.SAMPLE_SET_SELECTION,

package/dist-tsc/index.d.ts

@@ -2,4 +2,5 @@ export { ViewType, DataType, FileType, CoordinationType, AsyncFunctionType, View
 export { FILE_TYPE_DATA_TYPE_MAPPING, DATA_TYPE_COORDINATION_VALUE_USAGE, ALT_ZARR_STORE_TYPES, } from './constant-relationships.js';
 export { AUTO_INDEPENDENT_COORDINATION_TYPES, COMPONENT_COORDINATION_TYPES, } from './coordination.js';
 export { default as META_VERSION } from './version.json';
+export * from './spatial-constants.js';
 //# sourceMappingURL=index.d.ts.map

package/dist-tsc/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,QAAQ,EACR,QAAQ,EACR,QAAQ,EACR,gBAAgB,EAChB,iBAAiB,EACjB,eAAe,EACf,eAAe,EACf,MAAM,GACP,MAAM,gBAAgB,CAAC;AACxB,OAAO,EACL,2BAA2B,EAC3B,kCAAkC,EAClC,oBAAoB,GACrB,MAAM,6BAA6B,CAAC;AACrC,OAAO,EACL,mCAAmC,EACnC,4BAA4B,GAC7B,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,gBAAgB,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,QAAQ,EACR,QAAQ,EACR,QAAQ,EACR,gBAAgB,EAChB,iBAAiB,EACjB,eAAe,EACf,eAAe,EACf,MAAM,GACP,MAAM,gBAAgB,CAAC;AACxB,OAAO,EACL,2BAA2B,EAC3B,kCAAkC,EAClC,oBAAoB,GACrB,MAAM,6BAA6B,CAAC;AACrC,OAAO,EACL,mCAAmC,EACnC,4BAA4B,GAC7B,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,gBAAgB,CAAC;AACzD,cAAc,wBAAwB,CAAC"}

package/dist-tsc/index.js

@@ -2,3 +2,4 @@ export { ViewType, DataType, FileType, CoordinationType, AsyncFunctionType, View
 export { FILE_TYPE_DATA_TYPE_MAPPING, DATA_TYPE_COORDINATION_VALUE_USAGE, ALT_ZARR_STORE_TYPES, } from './constant-relationships.js';
 export { AUTO_INDEPENDENT_COORDINATION_TYPES, COMPONENT_COORDINATION_TYPES, } from './coordination.js';
 export { default as META_VERSION } from './version.json';
+export * from './spatial-constants.js';

package/dist-tsc/spatial-constants.d.ts

@@ -0,0 +1,27 @@
+export declare const GLOBAL_LABELS: string[];
+export declare const DEFAULT_RASTER_DOMAIN_TYPE = "Min/Max";
+export declare const DEFAULT_MOLECULES_LAYER: {
+    opacity: number;
+    radius: number;
+    visible: boolean;
+};
+export declare const DEFAULT_CELLS_LAYER: {
+    opacity: number;
+    radius: number;
+    visible: boolean;
+    stroked: boolean;
+};
+export declare const DEFAULT_NEIGHBORHOODS_LAYER: {
+    visible: boolean;
+};
+export declare const DEFAULT_LAYER_TYPE_ORDERING: string[];
+export declare const DEFAULT_RASTER_LAYER_PROPS: {
+    visible: boolean;
+    colormap: null;
+    opacity: number;
+    domainType: string;
+    transparentColor: number[];
+    renderingMode: string;
+    use3d: boolean;
+};
+//# sourceMappingURL=spatial-constants.d.ts.map

package/dist-tsc/spatial-constants.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"spatial-constants.d.ts","sourceRoot":"","sources":["../src/spatial-constants.ts"],"names":[],"mappings":"AACA,eAAO,MAAM,aAAa,UAAa,CAAC;AAExC,eAAO,MAAM,0BAA0B,YAAY,CAAC;AAEpD,eAAO,MAAM,uBAAuB;;;;CAEnC,CAAC;AACF,eAAO,MAAM,mBAAmB;;;;;CAE/B,CAAC;AACF,eAAO,MAAM,2BAA2B;;CAEvC,CAAC;AAEF,eAAO,MAAM,2BAA2B,UAKvC,CAAC;AAEF,eAAO,MAAM,0BAA0B;;;;;;;;CAStC,CAAC"}

package/dist-tsc/spatial-constants.js

@@ -0,0 +1,27 @@
+export const GLOBAL_LABELS = ['z', 't'];
+export const DEFAULT_RASTER_DOMAIN_TYPE = 'Min/Max';
+export const DEFAULT_MOLECULES_LAYER = {
+    opacity: 1, radius: 20, visible: true,
+};
+export const DEFAULT_CELLS_LAYER = {
+    opacity: 1, radius: 50, visible: true, stroked: false,
+};
+export const DEFAULT_NEIGHBORHOODS_LAYER = {
+    visible: false,
+};
+export const DEFAULT_LAYER_TYPE_ORDERING = [
+    'molecules',
+    'cells',
+    'neighborhoods',
+    'raster',
+];
+export const DEFAULT_RASTER_LAYER_PROPS = {
+    visible: true,
+    colormap: null,
+    opacity: 1,
+    domainType: DEFAULT_RASTER_DOMAIN_TYPE,
+    transparentColor: [0, 0, 0],
+    // Importing the full viv package here would add a lot of weight to the bundle
+    renderingMode: 'Additive', // viv.RENDERING_MODES.ADDITIVE,
+    use3d: false,
+};

package/dist-tsc/version.json

@@ -1,7 +1,7 @@
 {
     "note": "This file is autogenerated by .changeset/post-changelog.mjs.",
-    "version": "3.5.1",
-    "date": "2024-11-22",
+    "version": "3.5.3",
+    "date": "2025-01-14",
     "branch": "changeset-release/main",
-    "hash": "233b667a"
+    "hash": "681f7748"
 }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/constants-internal",
-  "version": "3.5.1",
+  "version": "3.5.3",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {

package/src/constants.ts

@@ -22,6 +22,7 @@ export const ViewType = {
   DOT_PLOT: 'dotPlot',
   FEATURE_BAR_PLOT: 'featureBarPlot',
   BIOMARKER_SELECT: 'biomarkerSelect',
+  LINK_CONTROLLER: 'linkController',
 };
 
 export const DataType = {
@@ -44,6 +45,8 @@ export const DataType = {
 export const AsyncFunctionType = {
   // String input (rather than Node input)
   AUTOCOMPLETE_FEATURE: 'autocompleteFeature', // (partial: string, targetModality: null | 'gene' | 'protein' | 'genomic-region' | 'cell-type') -> list of feature nodes
+  GET_ALTERNATIVE_TERMS: 'getAlternativeTerms', // (curieString) -> list of alternative curie strings
+  GET_TERM_MAPPING: 'getTermMapping', // (keyCuriePrefix, valueCuriePrefix) -> Record<curieString, curieString> for key to value
 
   TRANSFORM_FEATURE: 'transformFeature', // (featureNode, targetModality) -> list of feature nodes from target modality
   RELATED_FEATURES: 'relatedFeatures', // (featureNode) -> list of related feature nodes

package/src/coordination.ts

@@ -447,6 +447,7 @@ export const COMPONENT_COORDINATION_TYPES = {
     CoordinationType.OBS_COLOR_ENCODING,
     CoordinationType.ADDITIONAL_OBS_SETS,
   ],
+  [ViewType.LINK_CONTROLLER]: [],
   [ViewType.BIOMARKER_SELECT]: [
     CoordinationType.FEATURE_SELECTION,
     CoordinationType.SAMPLE_SET_SELECTION,

package/src/index.ts

@@ -18,3 +18,4 @@ export {
   COMPONENT_COORDINATION_TYPES,
 } from './coordination.js';
 export { default as META_VERSION } from './version.json';
+export * from './spatial-constants.js';

package/src/spatial-constants.ts

@@ -0,0 +1,32 @@
+
+export const GLOBAL_LABELS = ['z', 't'];
+
+export const DEFAULT_RASTER_DOMAIN_TYPE = 'Min/Max';
+
+export const DEFAULT_MOLECULES_LAYER = {
+  opacity: 1, radius: 20, visible: true,
+};
+export const DEFAULT_CELLS_LAYER = {
+  opacity: 1, radius: 50, visible: true, stroked: false,
+};
+export const DEFAULT_NEIGHBORHOODS_LAYER = {
+  visible: false,
+};
+
+export const DEFAULT_LAYER_TYPE_ORDERING = [
+  'molecules',
+  'cells',
+  'neighborhoods',
+  'raster',
+];
+
+export const DEFAULT_RASTER_LAYER_PROPS = {
+  visible: true,
+  colormap: null,
+  opacity: 1,
+  domainType: DEFAULT_RASTER_DOMAIN_TYPE,
+  transparentColor: [0, 0, 0],
+  // Importing the full viv package here would add a lot of weight to the bundle
+  renderingMode: 'Additive', // viv.RENDERING_MODES.ADDITIVE,
+  use3d: false,
+};

package/src/version.json

@@ -1,7 +1,7 @@
 {
   "note": "This file is autogenerated by .changeset/post-changelog.mjs.",
-  "version": "3.5.1",
-  "date": "2024-11-22",
+  "version": "3.5.3",
+  "date": "2025-01-14",
   "branch": "changeset-release/main",
-  "hash": "233b667a"
+  "hash": "681f7748"
 }