@vitessce/constants-internal 3.4.6 → 3.4.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/index.js +45 -6
- package/dist-tsc/constants.d.ts +16 -0
- package/dist-tsc/constants.d.ts.map +1 -1
- package/dist-tsc/constants.js +16 -0
- package/dist-tsc/coordination.d.ts.map +1 -1
- package/dist-tsc/coordination.js +30 -0
- package/dist-tsc/version.json +3 -3
- package/package.json +1 -1
- package/src/constants.ts +17 -0
- package/src/coordination.ts +30 -0
- package/src/version.json +3 -3
package/dist/index.js
CHANGED
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@@ -14,6 +14,7 @@ const ViewType = {
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OBS_SET_SIZES: "obsSetSizes",
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OBS_SET_FEATURE_VALUE_DISTRIBUTION: "obsSetFeatureValueDistribution",
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FEATURE_VALUE_HISTOGRAM: "featureValueHistogram",
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DOT_PLOT: "dotPlot",
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FEATURE_BAR_PLOT: "featureBarPlot"
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};
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const DataType = {
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@@ -203,6 +204,7 @@ const CoordinationType = {
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GATING_FEATURE_SELECTION_X: "gatingFeatureSelectionX",
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GATING_FEATURE_SELECTION_Y: "gatingFeatureSelectionY",
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FEATURE_VALUE_TRANSFORM_COEFFICIENT: "featureValueTransformCoefficient",
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FEATURE_VALUE_POSITIVITY_THRESHOLD: "featureValuePositivityThreshold",
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TOOLTIPS_VISIBLE: "tooltipsVisible",
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FILE_UID: "fileUid",
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IMAGE_LAYER: "imageLayer",
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@@ -250,7 +252,14 @@ const CoordinationType = {
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SPATIAL_CHANNEL_LABEL_SIZE: "spatialChannelLabelSize",
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// Multi-sample / comparative
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SAMPLE_TYPE: "sampleType",
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-
SAMPLE_SET_SELECTION: "sampleSetSelection"
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SAMPLE_SET_SELECTION: "sampleSetSelection",
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SAMPLE_SET_COLOR: "sampleSetColor",
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EMBEDDING_POINTS_VISIBLE: "embeddingPointsVisible",
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EMBEDDING_CONTOURS_VISIBLE: "embeddingContoursVisible",
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EMBEDDING_CONTOURS_FILLED: "embeddingContoursFilled",
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EMBEDDING_CONTOUR_PERCENTILES: "embeddingContourPercentiles",
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CONTOUR_COLOR_ENCODING: "contourColorEncoding",
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CONTOUR_COLOR: "contourColor"
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};
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const STATUS = {
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LOADING: "loading",
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@@ -446,7 +455,16 @@ const COMPONENT_COORDINATION_TYPES = {
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CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
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CoordinationType.OBS_COLOR_ENCODING,
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CoordinationType.ADDITIONAL_OBS_SETS,
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-
CoordinationType.TOOLTIPS_VISIBLE
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CoordinationType.TOOLTIPS_VISIBLE,
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CoordinationType.SAMPLE_TYPE,
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CoordinationType.SAMPLE_SET_SELECTION,
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CoordinationType.SAMPLE_SET_COLOR,
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CoordinationType.EMBEDDING_POINTS_VISIBLE,
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CoordinationType.EMBEDDING_CONTOURS_VISIBLE,
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CoordinationType.EMBEDDING_CONTOURS_FILLED,
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CoordinationType.EMBEDDING_CONTOUR_PERCENTILES,
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CoordinationType.CONTOUR_COLOR_ENCODING,
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CoordinationType.CONTOUR_COLOR
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],
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[ViewType.GATING]: [
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CoordinationType.DATASET,
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@@ -663,7 +681,8 @@ const COMPONENT_COORDINATION_TYPES = {
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CoordinationType.OBS_SET_COLOR,
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CoordinationType.ADDITIONAL_OBS_SETS,
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CoordinationType.SAMPLE_TYPE,
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-
CoordinationType.SAMPLE_SET_SELECTION
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CoordinationType.SAMPLE_SET_SELECTION,
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CoordinationType.SAMPLE_SET_COLOR
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],
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[ViewType.FEATURE_VALUE_HISTOGRAM]: [
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CoordinationType.DATASET,
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@@ -776,6 +795,26 @@ const COMPONENT_COORDINATION_TYPES = {
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CoordinationType.DATASET,
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CoordinationType.SPATIAL_IMAGE_LAYER
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],
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[ViewType.DOT_PLOT]: [
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CoordinationType.DATASET,
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CoordinationType.OBS_TYPE,
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CoordinationType.FEATURE_TYPE,
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CoordinationType.FEATURE_VALUE_TYPE,
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CoordinationType.FEATURE_SELECTION,
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CoordinationType.FEATURE_HIGHLIGHT,
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CoordinationType.FEATURE_FILTER,
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CoordinationType.FEATURE_VALUE_TRANSFORM,
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CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT,
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CoordinationType.FEATURE_VALUE_POSITIVITY_THRESHOLD,
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CoordinationType.FEATURE_VALUE_COLORMAP,
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CoordinationType.OBS_SET_SELECTION,
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CoordinationType.OBS_SET_HIGHLIGHT,
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CoordinationType.OBS_SET_COLOR,
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CoordinationType.ADDITIONAL_OBS_SETS,
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CoordinationType.SAMPLE_TYPE,
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CoordinationType.SAMPLE_SET_SELECTION,
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CoordinationType.SAMPLE_SET_COLOR
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],
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higlass: [
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CoordinationType.DATASET,
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CoordinationType.GENOMIC_ZOOM_X,
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@@ -803,10 +842,10 @@ const COMPONENT_COORDINATION_TYPES = {
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]
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};
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const note = "This file is autogenerated by .changeset/post-changelog.mjs.";
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806
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-
const version = "3.4.
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-
const date = "2024-
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const version = "3.4.8";
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const date = "2024-07-26";
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const branch = "changeset-release/main";
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-
const hash = "
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const hash = "61e7e8e5";
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const version$1 = {
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note,
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version,
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package/dist-tsc/constants.d.ts
CHANGED
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@@ -19,6 +19,7 @@ export declare const ViewType: {
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OBS_SET_SIZES: string;
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OBS_SET_FEATURE_VALUE_DISTRIBUTION: string;
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FEATURE_VALUE_HISTOGRAM: string;
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DOT_PLOT: string;
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FEATURE_BAR_PLOT: string;
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};
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export declare const DataType: {
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@@ -37,6 +38,13 @@ export declare const DataType: {
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SAMPLE_SETS: string;
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SAMPLE_EDGES: string;
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};
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export declare const AsyncFunctionType: {
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FEATURE_METADATA: string;
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FEATURE_EDGES: string;
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FEATURE_TO_INTERVAL: string;
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OBS_SET_TO_FEATURES: string;
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FEATURES_TO_OBS_SET: string;
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};
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export declare const FileType: {
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ANNDATA_ZARR: string;
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ANNDATA_ZARR_ZIP: string;
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@@ -188,6 +196,7 @@ export declare const CoordinationType: {
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GATING_FEATURE_SELECTION_X: string;
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GATING_FEATURE_SELECTION_Y: string;
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FEATURE_VALUE_TRANSFORM_COEFFICIENT: string;
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FEATURE_VALUE_POSITIVITY_THRESHOLD: string;
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TOOLTIPS_VISIBLE: string;
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FILE_UID: string;
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IMAGE_LAYER: string;
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@@ -227,6 +236,13 @@ export declare const CoordinationType: {
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SPATIAL_CHANNEL_LABEL_SIZE: string;
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SAMPLE_TYPE: string;
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SAMPLE_SET_SELECTION: string;
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SAMPLE_SET_COLOR: string;
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EMBEDDING_POINTS_VISIBLE: string;
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EMBEDDING_CONTOURS_VISIBLE: string;
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EMBEDDING_CONTOURS_FILLED: string;
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EMBEDDING_CONTOUR_PERCENTILES: string;
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CONTOUR_COLOR_ENCODING: string;
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CONTOUR_COLOR: string;
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};
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export declare const STATUS: {
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LOADING: string;
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,eAAO,MAAM,QAAQ
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1
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{"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;CAkBpB,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;CAepB,CAAC;AAEF,eAAO,MAAM,iBAAiB;;;;;;CAM7B,CAAC;AAGF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAwGpB,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAqH5B,CAAC;AAEF,eAAO,MAAM,MAAM;;;;CAIlB,CAAC"}
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package/dist-tsc/constants.js
CHANGED
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@@ -19,6 +19,7 @@ export const ViewType = {
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OBS_SET_SIZES: 'obsSetSizes',
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OBS_SET_FEATURE_VALUE_DISTRIBUTION: 'obsSetFeatureValueDistribution',
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FEATURE_VALUE_HISTOGRAM: 'featureValueHistogram',
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DOT_PLOT: 'dotPlot',
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FEATURE_BAR_PLOT: 'featureBarPlot',
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};
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export const DataType = {
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@@ -37,6 +38,13 @@ export const DataType = {
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SAMPLE_SETS: 'sampleSets',
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SAMPLE_EDGES: 'sampleEdges',
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};
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export const AsyncFunctionType = {
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FEATURE_METADATA: 'featureMetadata', // (featureName, featureType) -> metadata object
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FEATURE_EDGES: 'featureEdges', // (featureName, featureType, targetFeatureType) -> list of features from target modality
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FEATURE_TO_INTERVAL: 'featureToInterval', // (featureName, featureType) -> genomic interval { chr, start, end }
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OBS_SET_TO_FEATURES: 'obsSetToFeatures', // (cell type name) -> list of feature names
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FEATURES_TO_OBS_SET: 'featuresToObsSet', // (list of feature names) -> cell type name
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};
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export const FileType = {
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// Joint file types
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ANNDATA_ZARR: 'anndata.zarr',
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@@ -212,6 +220,7 @@ export const CoordinationType = {
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GATING_FEATURE_SELECTION_X: 'gatingFeatureSelectionX',
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GATING_FEATURE_SELECTION_Y: 'gatingFeatureSelectionY',
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FEATURE_VALUE_TRANSFORM_COEFFICIENT: 'featureValueTransformCoefficient',
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FEATURE_VALUE_POSITIVITY_THRESHOLD: 'featureValuePositivityThreshold',
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TOOLTIPS_VISIBLE: 'tooltipsVisible',
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FILE_UID: 'fileUid',
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IMAGE_LAYER: 'imageLayer',
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@@ -255,6 +264,13 @@ export const CoordinationType = {
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// Multi-sample / comparative
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SAMPLE_TYPE: 'sampleType',
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SAMPLE_SET_SELECTION: 'sampleSetSelection',
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SAMPLE_SET_COLOR: 'sampleSetColor',
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EMBEDDING_POINTS_VISIBLE: 'embeddingPointsVisible',
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EMBEDDING_CONTOURS_VISIBLE: 'embeddingContoursVisible',
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EMBEDDING_CONTOURS_FILLED: 'embeddingContoursFilled',
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EMBEDDING_CONTOUR_PERCENTILES: 'embeddingContourPercentiles',
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CONTOUR_COLOR_ENCODING: 'contourColorEncoding',
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CONTOUR_COLOR: 'contourColor',
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};
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export const STATUS = {
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LOADING: 'loading',
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"coordination.d.ts","sourceRoot":"","sources":["../src/coordination.ts"],"names":[],"mappings":"AASA,eAAO,MAAM,mCAAmC,UAc/C,CAAC;AAEF;;;;;;;KAOK;AACL,eAAO,MAAM,4BAA4B;;;
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1
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{"version":3,"file":"coordination.d.ts","sourceRoot":"","sources":["../src/coordination.ts"],"names":[],"mappings":"AASA,eAAO,MAAM,mCAAmC,UAc/C,CAAC;AAEF;;;;;;;KAOK;AACL,eAAO,MAAM,4BAA4B;;;CAgaxC,CAAC"}
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package/dist-tsc/coordination.js
CHANGED
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@@ -61,6 +61,15 @@ export const COMPONENT_COORDINATION_TYPES = {
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CoordinationType.OBS_COLOR_ENCODING,
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CoordinationType.ADDITIONAL_OBS_SETS,
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CoordinationType.TOOLTIPS_VISIBLE,
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CoordinationType.SAMPLE_TYPE,
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CoordinationType.SAMPLE_SET_SELECTION,
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CoordinationType.SAMPLE_SET_COLOR,
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CoordinationType.EMBEDDING_POINTS_VISIBLE,
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CoordinationType.EMBEDDING_CONTOURS_VISIBLE,
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CoordinationType.EMBEDDING_CONTOURS_FILLED,
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CoordinationType.EMBEDDING_CONTOUR_PERCENTILES,
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CoordinationType.CONTOUR_COLOR_ENCODING,
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CoordinationType.CONTOUR_COLOR,
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],
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[ViewType.GATING]: [
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CoordinationType.DATASET,
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@@ -278,6 +287,7 @@ export const COMPONENT_COORDINATION_TYPES = {
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CoordinationType.ADDITIONAL_OBS_SETS,
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CoordinationType.SAMPLE_TYPE,
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CoordinationType.SAMPLE_SET_SELECTION,
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CoordinationType.SAMPLE_SET_COLOR,
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],
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[ViewType.FEATURE_VALUE_HISTOGRAM]: [
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CoordinationType.DATASET,
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@@ -390,6 +400,26 @@ export const COMPONENT_COORDINATION_TYPES = {
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CoordinationType.DATASET,
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CoordinationType.SPATIAL_IMAGE_LAYER,
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],
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+
[ViewType.DOT_PLOT]: [
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CoordinationType.DATASET,
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CoordinationType.OBS_TYPE,
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CoordinationType.FEATURE_TYPE,
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CoordinationType.FEATURE_VALUE_TYPE,
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CoordinationType.FEATURE_SELECTION,
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CoordinationType.FEATURE_HIGHLIGHT,
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CoordinationType.FEATURE_FILTER,
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CoordinationType.FEATURE_VALUE_TRANSFORM,
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CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT,
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CoordinationType.FEATURE_VALUE_POSITIVITY_THRESHOLD,
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CoordinationType.FEATURE_VALUE_COLORMAP,
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415
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CoordinationType.OBS_SET_SELECTION,
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CoordinationType.OBS_SET_HIGHLIGHT,
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CoordinationType.OBS_SET_COLOR,
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CoordinationType.ADDITIONAL_OBS_SETS,
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419
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CoordinationType.SAMPLE_TYPE,
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CoordinationType.SAMPLE_SET_SELECTION,
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CoordinationType.SAMPLE_SET_COLOR,
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],
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higlass: [
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CoordinationType.DATASET,
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CoordinationType.GENOMIC_ZOOM_X,
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package/dist-tsc/version.json
CHANGED
package/package.json
CHANGED
package/src/constants.ts
CHANGED
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@@ -19,6 +19,7 @@ export const ViewType = {
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19
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OBS_SET_SIZES: 'obsSetSizes',
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OBS_SET_FEATURE_VALUE_DISTRIBUTION: 'obsSetFeatureValueDistribution',
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FEATURE_VALUE_HISTOGRAM: 'featureValueHistogram',
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+
DOT_PLOT: 'dotPlot',
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FEATURE_BAR_PLOT: 'featureBarPlot',
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};
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@@ -39,6 +40,14 @@ export const DataType = {
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SAMPLE_EDGES: 'sampleEdges',
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};
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+
export const AsyncFunctionType = {
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|
+
FEATURE_METADATA: 'featureMetadata', // (featureName, featureType) -> metadata object
|
|
45
|
+
FEATURE_EDGES: 'featureEdges', // (featureName, featureType, targetFeatureType) -> list of features from target modality
|
|
46
|
+
FEATURE_TO_INTERVAL: 'featureToInterval', // (featureName, featureType) -> genomic interval { chr, start, end }
|
|
47
|
+
OBS_SET_TO_FEATURES: 'obsSetToFeatures', // (cell type name) -> list of feature names
|
|
48
|
+
FEATURES_TO_OBS_SET: 'featuresToObsSet', // (list of feature names) -> cell type name
|
|
49
|
+
};
|
|
50
|
+
|
|
42
51
|
|
|
43
52
|
export const FileType = {
|
|
44
53
|
// Joint file types
|
|
@@ -216,6 +225,7 @@ export const CoordinationType = {
|
|
|
216
225
|
GATING_FEATURE_SELECTION_X: 'gatingFeatureSelectionX',
|
|
217
226
|
GATING_FEATURE_SELECTION_Y: 'gatingFeatureSelectionY',
|
|
218
227
|
FEATURE_VALUE_TRANSFORM_COEFFICIENT: 'featureValueTransformCoefficient',
|
|
228
|
+
FEATURE_VALUE_POSITIVITY_THRESHOLD: 'featureValuePositivityThreshold',
|
|
219
229
|
TOOLTIPS_VISIBLE: 'tooltipsVisible',
|
|
220
230
|
FILE_UID: 'fileUid',
|
|
221
231
|
IMAGE_LAYER: 'imageLayer',
|
|
@@ -259,6 +269,13 @@ export const CoordinationType = {
|
|
|
259
269
|
// Multi-sample / comparative
|
|
260
270
|
SAMPLE_TYPE: 'sampleType',
|
|
261
271
|
SAMPLE_SET_SELECTION: 'sampleSetSelection',
|
|
272
|
+
SAMPLE_SET_COLOR: 'sampleSetColor',
|
|
273
|
+
EMBEDDING_POINTS_VISIBLE: 'embeddingPointsVisible',
|
|
274
|
+
EMBEDDING_CONTOURS_VISIBLE: 'embeddingContoursVisible',
|
|
275
|
+
EMBEDDING_CONTOURS_FILLED: 'embeddingContoursFilled',
|
|
276
|
+
EMBEDDING_CONTOUR_PERCENTILES: 'embeddingContourPercentiles',
|
|
277
|
+
CONTOUR_COLOR_ENCODING: 'contourColorEncoding',
|
|
278
|
+
CONTOUR_COLOR: 'contourColor',
|
|
262
279
|
};
|
|
263
280
|
|
|
264
281
|
export const STATUS = {
|
package/src/coordination.ts
CHANGED
|
@@ -63,6 +63,15 @@ export const COMPONENT_COORDINATION_TYPES = {
|
|
|
63
63
|
CoordinationType.OBS_COLOR_ENCODING,
|
|
64
64
|
CoordinationType.ADDITIONAL_OBS_SETS,
|
|
65
65
|
CoordinationType.TOOLTIPS_VISIBLE,
|
|
66
|
+
CoordinationType.SAMPLE_TYPE,
|
|
67
|
+
CoordinationType.SAMPLE_SET_SELECTION,
|
|
68
|
+
CoordinationType.SAMPLE_SET_COLOR,
|
|
69
|
+
CoordinationType.EMBEDDING_POINTS_VISIBLE,
|
|
70
|
+
CoordinationType.EMBEDDING_CONTOURS_VISIBLE,
|
|
71
|
+
CoordinationType.EMBEDDING_CONTOURS_FILLED,
|
|
72
|
+
CoordinationType.EMBEDDING_CONTOUR_PERCENTILES,
|
|
73
|
+
CoordinationType.CONTOUR_COLOR_ENCODING,
|
|
74
|
+
CoordinationType.CONTOUR_COLOR,
|
|
66
75
|
],
|
|
67
76
|
[ViewType.GATING]: [
|
|
68
77
|
CoordinationType.DATASET,
|
|
@@ -280,6 +289,7 @@ export const COMPONENT_COORDINATION_TYPES = {
|
|
|
280
289
|
CoordinationType.ADDITIONAL_OBS_SETS,
|
|
281
290
|
CoordinationType.SAMPLE_TYPE,
|
|
282
291
|
CoordinationType.SAMPLE_SET_SELECTION,
|
|
292
|
+
CoordinationType.SAMPLE_SET_COLOR,
|
|
283
293
|
],
|
|
284
294
|
[ViewType.FEATURE_VALUE_HISTOGRAM]: [
|
|
285
295
|
CoordinationType.DATASET,
|
|
@@ -392,6 +402,26 @@ export const COMPONENT_COORDINATION_TYPES = {
|
|
|
392
402
|
CoordinationType.DATASET,
|
|
393
403
|
CoordinationType.SPATIAL_IMAGE_LAYER,
|
|
394
404
|
],
|
|
405
|
+
[ViewType.DOT_PLOT]: [
|
|
406
|
+
CoordinationType.DATASET,
|
|
407
|
+
CoordinationType.OBS_TYPE,
|
|
408
|
+
CoordinationType.FEATURE_TYPE,
|
|
409
|
+
CoordinationType.FEATURE_VALUE_TYPE,
|
|
410
|
+
CoordinationType.FEATURE_SELECTION,
|
|
411
|
+
CoordinationType.FEATURE_HIGHLIGHT,
|
|
412
|
+
CoordinationType.FEATURE_FILTER,
|
|
413
|
+
CoordinationType.FEATURE_VALUE_TRANSFORM,
|
|
414
|
+
CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT,
|
|
415
|
+
CoordinationType.FEATURE_VALUE_POSITIVITY_THRESHOLD,
|
|
416
|
+
CoordinationType.FEATURE_VALUE_COLORMAP,
|
|
417
|
+
CoordinationType.OBS_SET_SELECTION,
|
|
418
|
+
CoordinationType.OBS_SET_HIGHLIGHT,
|
|
419
|
+
CoordinationType.OBS_SET_COLOR,
|
|
420
|
+
CoordinationType.ADDITIONAL_OBS_SETS,
|
|
421
|
+
CoordinationType.SAMPLE_TYPE,
|
|
422
|
+
CoordinationType.SAMPLE_SET_SELECTION,
|
|
423
|
+
CoordinationType.SAMPLE_SET_COLOR,
|
|
424
|
+
],
|
|
395
425
|
higlass: [
|
|
396
426
|
CoordinationType.DATASET,
|
|
397
427
|
CoordinationType.GENOMIC_ZOOM_X,
|
package/src/version.json
CHANGED