@vitessce/constants-internal 3.4.11 → 3.4.14

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Files changed (12) hide show
  1. package/dist/index.js +15 -3
  2. package/dist-tsc/constant-relationships.d.ts +3 -0
  3. package/dist-tsc/constant-relationships.d.ts.map +1 -1
  4. package/dist-tsc/constant-relationships.js +8 -0
  5. package/dist-tsc/constants.d.ts +3 -0
  6. package/dist-tsc/constants.d.ts.map +1 -1
  7. package/dist-tsc/constants.js +4 -0
  8. package/dist-tsc/version.json +3 -3
  9. package/package.json +1 -1
  10. package/src/constant-relationships.ts +8 -0
  11. package/src/constants.ts +4 -0
  12. package/src/version.json +3 -3
package/dist/index.js CHANGED
@@ -54,6 +54,9 @@ const FileType = {
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  // OME-Zarr
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  IMAGE_OME_ZARR: "image.ome-zarr",
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  OBS_SEGMENTATIONS_OME_ZARR: "obsSegmentations.ome-zarr",
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+ // OME-Zarr - Zipped
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+ IMAGE_OME_ZARR_ZIP: "image.ome-zarr.zip",
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+ OBS_SEGMENTATIONS_OME_ZARR_ZIP: "obsSegmentations.ome-zarr.zip",
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  // AnnData
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  OBS_FEATURE_MATRIX_ANNDATA_ZARR: "obsFeatureMatrix.anndata.zarr",
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  OBS_FEATURE_COLUMNS_ANNDATA_ZARR: "obsFeatureColumns.anndata.zarr",
@@ -160,6 +163,7 @@ const CoordinationType = {
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  FEATURE_TYPE: "featureType",
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  FEATURE_VALUE_TYPE: "featureValueType",
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  OBS_LABELS_TYPE: "obsLabelsType",
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+ FEATURE_LABELS_TYPE: "featureLabelsType",
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  // Other types
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  EMBEDDING_TYPE: "embeddingType",
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  EMBEDDING_ZOOM: "embeddingZoom",
@@ -409,6 +413,7 @@ const DATA_TYPE_COORDINATION_VALUE_USAGE = {
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  ]
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  };
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  const ALT_ZARR_STORE_TYPES = {
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+ // For AnnData:
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  [FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR]: {
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  zip: FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR_ZIP,
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  h5ad: FileType.OBS_FEATURE_MATRIX_ANNDATA_H5AD
@@ -452,6 +457,13 @@ const ALT_ZARR_STORE_TYPES = {
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  [FileType.SAMPLE_EDGES_ANNDATA_ZARR]: {
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  zip: FileType.SAMPLE_EDGES_ANNDATA_ZARR_ZIP,
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  h5ad: FileType.SAMPLE_EDGES_ANNDATA_H5AD
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+ },
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+ // For OME-Zarr:
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+ [FileType.IMAGE_OME_ZARR]: {
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+ zip: FileType.IMAGE_OME_ZARR_ZIP
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+ },
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+ [FileType.OBS_SEGMENTATIONS_OME_ZARR]: {
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+ zip: FileType.OBS_SEGMENTATIONS_OME_ZARR_ZIP
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  }
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  };
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  const AUTO_INDEPENDENT_COORDINATION_TYPES = [
@@ -887,10 +899,10 @@ const COMPONENT_COORDINATION_TYPES = {
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  ]
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  };
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  const note = "This file is autogenerated by .changeset/post-changelog.mjs.";
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- const version = "3.4.11";
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- const date = "2024-09-27";
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+ const version = "3.4.14";
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+ const date = "2024-10-07";
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  const branch = "changeset-release/main";
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- const hash = "efd7d698";
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+ const hash = "f416e01c";
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  const version$1 = {
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  note,
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  version,
package/dist-tsc/constant-relationships.d.ts CHANGED
@@ -18,6 +18,9 @@ export declare const ALT_ZARR_STORE_TYPES: {
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  [x: string]: {
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  zip: string;
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  h5ad: string;
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+ } | {
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+ zip: string;
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+ h5ad?: undefined;
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  };
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  };
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  //# sourceMappingURL=constant-relationships.d.ts.map
package/dist-tsc/constant-relationships.d.ts.map CHANGED
@@ -1 +1 @@
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- {"version":3,"file":"constant-relationships.d.ts","sourceRoot":"","sources":["../src/constant-relationships.ts"],"names":[],"mappings":"AAEA;;;;GAIG;AACH,eAAO,MAAM,2BAA2B;;CA+DvC,CAAC;AAEF;;;;GAIG;AACH,eAAO,MAAM,kCAAkC;;CA6C9C,CAAC;AAKF,eAAO,MAAM,oBAAoB;;;;;CA6ChC,CAAC"}
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+ {"version":3,"file":"constant-relationships.d.ts","sourceRoot":"","sources":["../src/constant-relationships.ts"],"names":[],"mappings":"AAEA;;;;GAIG;AACH,eAAO,MAAM,2BAA2B;;CA+DvC,CAAC;AAEF;;;;GAIG;AACH,eAAO,MAAM,kCAAkC;;CA6C9C,CAAC;AAKF,eAAO,MAAM,oBAAoB;;;;;;;;CAqDhC,CAAC"}
package/dist-tsc/constant-relationships.js CHANGED
@@ -121,6 +121,7 @@ export const DATA_TYPE_COORDINATION_VALUE_USAGE = {
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  // corresponding to alternative store implementations,
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  // to avoid having to rely on file extensions.
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  export const ALT_ZARR_STORE_TYPES = {
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+ // For AnnData:
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  [FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR]: {
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  zip: FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR_ZIP,
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  h5ad: FileType.OBS_FEATURE_MATRIX_ANNDATA_H5AD,
@@ -165,4 +166,11 @@ export const ALT_ZARR_STORE_TYPES = {
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  zip: FileType.SAMPLE_EDGES_ANNDATA_ZARR_ZIP,
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  h5ad: FileType.SAMPLE_EDGES_ANNDATA_H5AD,
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  },
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+ // For OME-Zarr:
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+ [FileType.IMAGE_OME_ZARR]: {
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+ zip: FileType.IMAGE_OME_ZARR_ZIP,
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+ },
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+ [FileType.OBS_SEGMENTATIONS_OME_ZARR]: {
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+ zip: FileType.OBS_SEGMENTATIONS_OME_ZARR_ZIP,
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+ },
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  };
package/dist-tsc/constants.d.ts CHANGED
@@ -63,6 +63,8 @@ export declare const FileType: {
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  SAMPLE_SETS_CSV: string;
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  IMAGE_OME_ZARR: string;
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  OBS_SEGMENTATIONS_OME_ZARR: string;
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+ IMAGE_OME_ZARR_ZIP: string;
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+ OBS_SEGMENTATIONS_OME_ZARR_ZIP: string;
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  OBS_FEATURE_MATRIX_ANNDATA_ZARR: string;
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  OBS_FEATURE_COLUMNS_ANNDATA_ZARR: string;
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  OBS_SETS_ANNDATA_ZARR: string;
@@ -153,6 +155,7 @@ export declare const CoordinationType: {
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  FEATURE_TYPE: string;
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  FEATURE_VALUE_TYPE: string;
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  OBS_LABELS_TYPE: string;
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+ FEATURE_LABELS_TYPE: string;
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  EMBEDDING_TYPE: string;
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  EMBEDDING_ZOOM: string;
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  EMBEDDING_ROTATION: string;
package/dist-tsc/constants.d.ts.map CHANGED
@@ -1 +1 @@
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- {"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;CAkBpB,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;CAepB,CAAC;AAEF,eAAO,MAAM,iBAAiB;;;;;;CAM7B,CAAC;AAGF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAqHpB,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAqH5B,CAAC;AAEF,eAAO,MAAM,MAAM;;;;CAIlB,CAAC;AAEF,eAAO,MAAM,eAAe;;;CAG3B,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;CAgB3B,CAAC"}
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+ {"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;CAkBpB,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;CAepB,CAAC;AAEF,eAAO,MAAM,iBAAiB;;;;;;CAM7B,CAAC;AAGF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAwHpB,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAsH5B,CAAC;AAEF,eAAO,MAAM,MAAM;;;;CAIlB,CAAC;AAEF,eAAO,MAAM,eAAe;;;CAG3B,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;CAgB3B,CAAC"}
package/dist-tsc/constants.js CHANGED
@@ -66,6 +66,9 @@ export const FileType = {
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  // OME-Zarr
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  IMAGE_OME_ZARR: 'image.ome-zarr',
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  OBS_SEGMENTATIONS_OME_ZARR: 'obsSegmentations.ome-zarr',
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+ // OME-Zarr - Zipped
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+ IMAGE_OME_ZARR_ZIP: 'image.ome-zarr.zip',
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+ OBS_SEGMENTATIONS_OME_ZARR_ZIP: 'obsSegmentations.ome-zarr.zip',
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  // AnnData
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  OBS_FEATURE_MATRIX_ANNDATA_ZARR: 'obsFeatureMatrix.anndata.zarr',
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  OBS_FEATURE_COLUMNS_ANNDATA_ZARR: 'obsFeatureColumns.anndata.zarr',
@@ -176,6 +179,7 @@ export const CoordinationType = {
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  FEATURE_TYPE: 'featureType',
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  FEATURE_VALUE_TYPE: 'featureValueType',
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  OBS_LABELS_TYPE: 'obsLabelsType',
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+ FEATURE_LABELS_TYPE: 'featureLabelsType',
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  // Other types
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  EMBEDDING_TYPE: 'embeddingType',
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  EMBEDDING_ZOOM: 'embeddingZoom',
package/dist-tsc/version.json CHANGED
@@ -1,7 +1,7 @@
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  {
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  "note": "This file is autogenerated by .changeset/post-changelog.mjs.",
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- "version": "3.4.11",
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- "date": "2024-09-27",
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+ "version": "3.4.14",
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+ "date": "2024-10-07",
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  "branch": "changeset-release/main",
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- "hash": "efd7d698"
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+ "hash": "f416e01c"
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  }
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@vitessce/constants-internal",
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- "version": "3.4.11",
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+ "version": "3.4.14",
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  "author": "Gehlenborg Lab",
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  "homepage": "http://vitessce.io",
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  "repository": {
package/src/constant-relationships.ts CHANGED
@@ -126,6 +126,7 @@ export const DATA_TYPE_COORDINATION_VALUE_USAGE = {
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  // corresponding to alternative store implementations,
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  // to avoid having to rely on file extensions.
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  export const ALT_ZARR_STORE_TYPES = {
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+ // For AnnData:
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  [FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR]: {
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  zip: FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR_ZIP,
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  h5ad: FileType.OBS_FEATURE_MATRIX_ANNDATA_H5AD,
@@ -170,4 +171,11 @@ export const ALT_ZARR_STORE_TYPES = {
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  zip: FileType.SAMPLE_EDGES_ANNDATA_ZARR_ZIP,
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  h5ad: FileType.SAMPLE_EDGES_ANNDATA_H5AD,
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  },
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+ // For OME-Zarr:
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+ [FileType.IMAGE_OME_ZARR]: {
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+ zip: FileType.IMAGE_OME_ZARR_ZIP,
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+ },
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+ [FileType.OBS_SEGMENTATIONS_OME_ZARR]: {
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+ zip: FileType.OBS_SEGMENTATIONS_OME_ZARR_ZIP,
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+ },
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  };
package/src/constants.ts CHANGED
@@ -70,6 +70,9 @@ export const FileType = {
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  // OME-Zarr
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  IMAGE_OME_ZARR: 'image.ome-zarr',
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  OBS_SEGMENTATIONS_OME_ZARR: 'obsSegmentations.ome-zarr',
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+ // OME-Zarr - Zipped
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+ IMAGE_OME_ZARR_ZIP: 'image.ome-zarr.zip',
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+ OBS_SEGMENTATIONS_OME_ZARR_ZIP: 'obsSegmentations.ome-zarr.zip',
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  // AnnData
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  OBS_FEATURE_MATRIX_ANNDATA_ZARR: 'obsFeatureMatrix.anndata.zarr',
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  OBS_FEATURE_COLUMNS_ANNDATA_ZARR: 'obsFeatureColumns.anndata.zarr',
@@ -181,6 +184,7 @@ export const CoordinationType = {
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  FEATURE_TYPE: 'featureType',
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  FEATURE_VALUE_TYPE: 'featureValueType',
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  OBS_LABELS_TYPE: 'obsLabelsType',
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+ FEATURE_LABELS_TYPE: 'featureLabelsType',
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  // Other types
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  EMBEDDING_TYPE: 'embeddingType',
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  EMBEDDING_ZOOM: 'embeddingZoom',
package/src/version.json CHANGED
@@ -1,7 +1,7 @@
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  {
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  "note": "This file is autogenerated by .changeset/post-changelog.mjs.",
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- "version": "3.4.11",
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- "date": "2024-09-27",
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+ "version": "3.4.14",
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+ "date": "2024-10-07",
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  "branch": "changeset-release/main",
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- "hash": "efd7d698"
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+ "hash": "f416e01c"
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  }