@vitessce/constants-internal 3.3.1 → 3.3.3

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Files changed (14) hide show
  1. package/dist/index.js +15 -4
  2. package/dist-tsc/constant-relationships.d.ts.map +1 -1
  3. package/dist-tsc/constant-relationships.js +5 -1
  4. package/dist-tsc/constants.d.ts +1 -0
  5. package/dist-tsc/constants.d.ts.map +1 -1
  6. package/dist-tsc/constants.js +2 -0
  7. package/dist-tsc/coordination.d.ts.map +1 -1
  8. package/dist-tsc/coordination.js +5 -0
  9. package/dist-tsc/version.json +3 -3
  10. package/package.json +1 -1
  11. package/src/constant-relationships.ts +5 -1
  12. package/src/constants.ts +2 -0
  13. package/src/coordination.ts +5 -0
  14. package/src/version.json +3 -3
package/dist/index.js CHANGED
@@ -44,7 +44,9 @@ const FileType = {
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  OBS_SEGMENTATIONS_JSON: "obsSegmentations.json",
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  OBS_SETS_CSV: "obsSets.csv",
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  OBS_SETS_JSON: "obsSets.json",
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+ // OME-Zarr
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  IMAGE_OME_ZARR: "image.ome-zarr",
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+ OBS_SEGMENTATIONS_OME_ZARR: "obsSegmentations.ome-zarr",
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  // AnnData
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  OBS_FEATURE_MATRIX_ANNDATA_ZARR: "obsFeatureMatrix.anndata.zarr",
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  OBS_SETS_ANNDATA_ZARR: "obsSets.anndata.zarr",
@@ -243,6 +245,7 @@ const FILE_TYPE_DATA_TYPE_MAPPING = {
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  [FileType.OBS_SETS_CSV]: DataType.OBS_SETS,
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  [FileType.OBS_SETS_JSON]: DataType.OBS_SETS,
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  [FileType.IMAGE_OME_ZARR]: DataType.IMAGE,
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+ [FileType.OBS_SEGMENTATIONS_OME_ZARR]: DataType.OBS_SEGMENTATIONS,
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  [FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
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  [FileType.OBS_SETS_ANNDATA_ZARR]: DataType.OBS_SETS,
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  [FileType.OBS_EMBEDDING_ANNDATA_ZARR]: DataType.OBS_EMBEDDING,
@@ -288,6 +291,7 @@ const FILE_TYPE_DATA_TYPE_MAPPING = {
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  };
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  const DATA_TYPE_COORDINATION_VALUE_USAGE = {
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  [DataType.OBS_SEGMENTATIONS]: [
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+ CoordinationType.FILE_UID,
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  CoordinationType.OBS_TYPE
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  ],
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  [DataType.OBS_EMBEDDING]: [
@@ -319,7 +323,9 @@ const DATA_TYPE_COORDINATION_VALUE_USAGE = {
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  CoordinationType.FEATURE_VALUE_TYPE
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  ],
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  [DataType.GENOMIC_PROFILES]: [],
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- [DataType.IMAGE]: [],
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+ [DataType.IMAGE]: [
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+ CoordinationType.FILE_UID
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+ ],
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  [DataType.NEIGHBORHOODS]: []
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  };
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  const AUTO_INDEPENDENT_COORDINATION_TYPES = [
@@ -645,7 +651,9 @@ const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.SPATIAL_SEGMENTATION_FILLED,
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  CoordinationType.SPATIAL_SEGMENTATION_STROKE_WIDTH,
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  CoordinationType.IMAGE_CHANNEL,
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+ CoordinationType.IMAGE_LAYER,
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  CoordinationType.SEGMENTATION_CHANNEL,
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+ CoordinationType.SEGMENTATION_LAYER,
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  CoordinationType.SPATIAL_CHANNEL_VISIBLE,
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  CoordinationType.SPATIAL_CHANNEL_OPACITY,
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  CoordinationType.SPATIAL_CHANNEL_WINDOW,
@@ -663,6 +671,9 @@ const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.SPATIAL_SPOT_STROKE_WIDTH,
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  CoordinationType.SPATIAL_LAYER_COLOR,
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  CoordinationType.OBS_COLOR_ENCODING,
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+ CoordinationType.FEATURE_VALUE_COLORMAP,
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+ CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
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+ CoordinationType.FEATURE_SELECTION,
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  CoordinationType.TOOLTIPS_VISIBLE,
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  CoordinationType.TOOLTIP_CROSSHAIRS_VISIBLE,
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  CoordinationType.LEGEND_VISIBLE,
@@ -703,10 +714,10 @@ const COMPONENT_COORDINATION_TYPES = {
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  ]
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  };
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  const note = "This file is autogenerated by .changeset/post-changelog.mjs.";
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- const version = "3.3.1";
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- const date = "2023-11-08";
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+ const version = "3.3.3";
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+ const date = "2024-01-25";
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  const branch = "changeset-release/main";
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- const hash = "8e897a20";
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+ const hash = "c2264756";
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  const version$1 = {
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  note,
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  version,
package/dist-tsc/constant-relationships.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"constant-relationships.d.ts","sourceRoot":"","sources":["../src/constant-relationships.ts"],"names":[],"mappings":"AAEA;;;;GAIG;AACH,eAAO,MAAM,2BAA2B;;CAyDvC,CAAC;AAEF;;;;GAIG;AACH,eAAO,MAAM,kCAAkC;;CAmC9C,CAAC"}
1
+ {"version":3,"file":"constant-relationships.d.ts","sourceRoot":"","sources":["../src/constant-relationships.ts"],"names":[],"mappings":"AAEA;;;;GAIG;AACH,eAAO,MAAM,2BAA2B;;CA0DvC,CAAC;AAEF;;;;GAIG;AACH,eAAO,MAAM,kCAAkC;;CAsC9C,CAAC"}
package/dist-tsc/constant-relationships.js CHANGED
@@ -17,6 +17,7 @@ export const FILE_TYPE_DATA_TYPE_MAPPING = {
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  [FileType.OBS_SETS_CSV]: DataType.OBS_SETS,
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  [FileType.OBS_SETS_JSON]: DataType.OBS_SETS,
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  [FileType.IMAGE_OME_ZARR]: DataType.IMAGE,
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+ [FileType.OBS_SEGMENTATIONS_OME_ZARR]: DataType.OBS_SEGMENTATIONS,
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  [FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
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  [FileType.OBS_SETS_ANNDATA_ZARR]: DataType.OBS_SETS,
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  [FileType.OBS_EMBEDDING_ANNDATA_ZARR]: DataType.OBS_EMBEDDING,
@@ -67,6 +68,7 @@ export const FILE_TYPE_DATA_TYPE_MAPPING = {
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  */
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  export const DATA_TYPE_COORDINATION_VALUE_USAGE = {
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  [DataType.OBS_SEGMENTATIONS]: [
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+ CoordinationType.FILE_UID,
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  CoordinationType.OBS_TYPE,
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  ],
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  [DataType.OBS_EMBEDDING]: [
@@ -98,6 +100,8 @@ export const DATA_TYPE_COORDINATION_VALUE_USAGE = {
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  CoordinationType.FEATURE_VALUE_TYPE,
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  ],
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  [DataType.GENOMIC_PROFILES]: [],
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- [DataType.IMAGE]: [],
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+ [DataType.IMAGE]: [
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+ CoordinationType.FILE_UID,
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+ ],
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  [DataType.NEIGHBORHOODS]: [],
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  };
package/dist-tsc/constants.d.ts CHANGED
@@ -48,6 +48,7 @@ export declare const FileType: {
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  OBS_SETS_CSV: string;
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  OBS_SETS_JSON: string;
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  IMAGE_OME_ZARR: string;
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+ OBS_SEGMENTATIONS_OME_ZARR: string;
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  OBS_FEATURE_MATRIX_ANNDATA_ZARR: string;
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  OBS_SETS_ANNDATA_ZARR: string;
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  OBS_EMBEDDING_ANNDATA_ZARR: string;
package/dist-tsc/constants.d.ts.map CHANGED
@@ -1 +1 @@
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- {"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;CAgBpB,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;CAapB,CAAC;AAGF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAmFpB,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CA0G5B,CAAC;AAEF,eAAO,MAAM,MAAM;;;;CAIlB,CAAC"}
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+ {"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;CAgBpB,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;CAapB,CAAC;AAGF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAqFpB,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CA0G5B,CAAC;AAEF,eAAO,MAAM,MAAM;;;;CAIlB,CAAC"}
package/dist-tsc/constants.js CHANGED
@@ -49,7 +49,9 @@ export const FileType = {
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  OBS_SEGMENTATIONS_JSON: 'obsSegmentations.json',
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  OBS_SETS_CSV: 'obsSets.csv',
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  OBS_SETS_JSON: 'obsSets.json',
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+ // OME-Zarr
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  IMAGE_OME_ZARR: 'image.ome-zarr',
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+ OBS_SEGMENTATIONS_OME_ZARR: 'obsSegmentations.ome-zarr',
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  // AnnData
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  OBS_FEATURE_MATRIX_ANNDATA_ZARR: 'obsFeatureMatrix.anndata.zarr',
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  OBS_SETS_ANNDATA_ZARR: 'obsSets.anndata.zarr',
package/dist-tsc/coordination.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"coordination.d.ts","sourceRoot":"","sources":["../src/coordination.ts"],"names":[],"mappings":"AASA,eAAO,MAAM,mCAAmC,UAc/C,CAAC;AAEF;;;;;;;KAOK;AACL,eAAO,MAAM,4BAA4B;;;CA4WxC,CAAC"}
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+ {"version":3,"file":"coordination.d.ts","sourceRoot":"","sources":["../src/coordination.ts"],"names":[],"mappings":"AASA,eAAO,MAAM,mCAAmC,UAc/C,CAAC;AAEF;;;;;;;KAOK;AACL,eAAO,MAAM,4BAA4B;;;CAiXxC,CAAC"}
package/dist-tsc/coordination.js CHANGED
@@ -337,7 +337,9 @@ export const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.SPATIAL_SEGMENTATION_FILLED,
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  CoordinationType.SPATIAL_SEGMENTATION_STROKE_WIDTH,
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  CoordinationType.IMAGE_CHANNEL,
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+ CoordinationType.IMAGE_LAYER,
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  CoordinationType.SEGMENTATION_CHANNEL,
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+ CoordinationType.SEGMENTATION_LAYER,
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  CoordinationType.SPATIAL_CHANNEL_VISIBLE,
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  CoordinationType.SPATIAL_CHANNEL_OPACITY,
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  CoordinationType.SPATIAL_CHANNEL_WINDOW,
@@ -355,6 +357,9 @@ export const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.SPATIAL_SPOT_STROKE_WIDTH,
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  CoordinationType.SPATIAL_LAYER_COLOR,
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  CoordinationType.OBS_COLOR_ENCODING,
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+ CoordinationType.FEATURE_VALUE_COLORMAP,
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+ CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
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+ CoordinationType.FEATURE_SELECTION,
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  CoordinationType.TOOLTIPS_VISIBLE,
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  CoordinationType.TOOLTIP_CROSSHAIRS_VISIBLE,
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  CoordinationType.LEGEND_VISIBLE,
package/dist-tsc/version.json CHANGED
@@ -1,7 +1,7 @@
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  {
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  "note": "This file is autogenerated by .changeset/post-changelog.mjs.",
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- "version": "3.3.1",
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- "date": "2023-11-08",
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+ "version": "3.3.3",
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+ "date": "2024-01-25",
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  "branch": "changeset-release/main",
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- "hash": "8e897a20"
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+ "hash": "c2264756"
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  }
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@vitessce/constants-internal",
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- "version": "3.3.1",
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+ "version": "3.3.3",
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  "author": "Gehlenborg Lab",
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  "homepage": "http://vitessce.io",
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  "repository": {
package/src/constant-relationships.ts CHANGED
@@ -18,6 +18,7 @@ export const FILE_TYPE_DATA_TYPE_MAPPING = {
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  [FileType.OBS_SETS_CSV]: DataType.OBS_SETS,
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  [FileType.OBS_SETS_JSON]: DataType.OBS_SETS,
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  [FileType.IMAGE_OME_ZARR]: DataType.IMAGE,
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+ [FileType.OBS_SEGMENTATIONS_OME_ZARR]: DataType.OBS_SEGMENTATIONS,
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  [FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
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  [FileType.OBS_SETS_ANNDATA_ZARR]: DataType.OBS_SETS,
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  [FileType.OBS_EMBEDDING_ANNDATA_ZARR]: DataType.OBS_EMBEDDING,
@@ -71,6 +72,7 @@ export const FILE_TYPE_DATA_TYPE_MAPPING = {
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  */
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  export const DATA_TYPE_COORDINATION_VALUE_USAGE = {
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  [DataType.OBS_SEGMENTATIONS]: [
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+ CoordinationType.FILE_UID,
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  CoordinationType.OBS_TYPE,
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  ],
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  [DataType.OBS_EMBEDDING]: [
@@ -102,6 +104,8 @@ export const DATA_TYPE_COORDINATION_VALUE_USAGE = {
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  CoordinationType.FEATURE_VALUE_TYPE,
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  ],
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  [DataType.GENOMIC_PROFILES]: [],
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- [DataType.IMAGE]: [],
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+ [DataType.IMAGE]: [
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+ CoordinationType.FILE_UID,
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+ ],
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  [DataType.NEIGHBORHOODS]: [],
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  };
package/src/constants.ts CHANGED
@@ -52,7 +52,9 @@ export const FileType = {
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  OBS_SEGMENTATIONS_JSON: 'obsSegmentations.json',
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  OBS_SETS_CSV: 'obsSets.csv',
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  OBS_SETS_JSON: 'obsSets.json',
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+ // OME-Zarr
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  IMAGE_OME_ZARR: 'image.ome-zarr',
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+ OBS_SEGMENTATIONS_OME_ZARR: 'obsSegmentations.ome-zarr',
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  // AnnData
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  OBS_FEATURE_MATRIX_ANNDATA_ZARR: 'obsFeatureMatrix.anndata.zarr',
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  OBS_SETS_ANNDATA_ZARR: 'obsSets.anndata.zarr',
package/src/coordination.ts CHANGED
@@ -339,7 +339,9 @@ export const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.SPATIAL_SEGMENTATION_FILLED,
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  CoordinationType.SPATIAL_SEGMENTATION_STROKE_WIDTH,
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  CoordinationType.IMAGE_CHANNEL,
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+ CoordinationType.IMAGE_LAYER,
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  CoordinationType.SEGMENTATION_CHANNEL,
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+ CoordinationType.SEGMENTATION_LAYER,
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  CoordinationType.SPATIAL_CHANNEL_VISIBLE,
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  CoordinationType.SPATIAL_CHANNEL_OPACITY,
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  CoordinationType.SPATIAL_CHANNEL_WINDOW,
@@ -357,6 +359,9 @@ export const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.SPATIAL_SPOT_STROKE_WIDTH,
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  CoordinationType.SPATIAL_LAYER_COLOR,
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  CoordinationType.OBS_COLOR_ENCODING,
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+ CoordinationType.FEATURE_VALUE_COLORMAP,
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+ CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
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+ CoordinationType.FEATURE_SELECTION,
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  CoordinationType.TOOLTIPS_VISIBLE,
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  CoordinationType.TOOLTIP_CROSSHAIRS_VISIBLE,
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  CoordinationType.LEGEND_VISIBLE,
package/src/version.json CHANGED
@@ -1,7 +1,7 @@
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  {
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  "note": "This file is autogenerated by .changeset/post-changelog.mjs.",
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- "version": "3.3.1",
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- "date": "2023-11-08",
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+ "version": "3.3.3",
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+ "date": "2024-01-25",
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  "branch": "changeset-release/main",
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- "hash": "8e897a20"
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+ "hash": "c2264756"
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  }