@vitessce/constants-internal 3.2.1 → 3.3.0

package/dist/index.js

@@ -32,6 +32,7 @@ const DataType = {
 const FileType = {
   // Joint file types
   ANNDATA_ZARR: "anndata.zarr",
+  SPATIALDATA_ZARR: "spatialdata.zarr",
   // Atomic file types
   OBS_EMBEDDING_CSV: "obsEmbedding.csv",
   OBS_SPOTS_CSV: "obsSpots.csv",
@@ -54,6 +55,16 @@ const FileType = {
   OBS_SEGMENTATIONS_ANNDATA_ZARR: "obsSegmentations.anndata.zarr",
   OBS_LABELS_ANNDATA_ZARR: "obsLabels.anndata.zarr",
   FEATURE_LABELS_ANNDATA_ZARR: "featureLabels.anndata.zarr",
+  // SpatialData
+  IMAGE_SPATIALDATA_ZARR: "image.spatialdata.zarr",
+  LABELS_SPATIALDATA_ZARR: "labels.spatialdata.zarr",
+  SHAPES_SPATIALDATA_ZARR: "shapes.spatialdata.zarr",
+  OBS_FEATURE_MATRIX_SPATIALDATA_ZARR: "obsFeatureMatrix.spatialdata.zarr",
+  OBS_SETS_SPATIALDATA_ZARR: "obsSets.spatialdata.zarr",
+  OBS_SPOTS_SPATIALDATA_ZARR: "obsSpots.spatialdata.zarr",
+  // TODO:
+  // OBS_POINTS_SPATIALDATA_ZARR: 'obsPoints.spatialdata.zarr',
+  // OBS_LOCATIONS_SPATIALDATA_ZARR: 'obsLocations.spatialdata.zarr',
   // MuData
   OBS_FEATURE_MATRIX_MUDATA_ZARR: "obsFeatureMatrix.mudata.zarr",
   OBS_SETS_MUDATA_ZARR: "obsSets.mudata.zarr",
@@ -252,6 +263,12 @@ const FILE_TYPE_DATA_TYPE_MAPPING = {
   [FileType.OBS_SEGMENTATIONS_MUDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
   [FileType.OBS_LABELS_MUDATA_ZARR]: DataType.OBS_LABELS,
   [FileType.FEATURE_LABELS_MUDATA_ZARR]: DataType.FEATURE_LABELS,
+  [FileType.IMAGE_SPATIALDATA_ZARR]: DataType.IMAGE,
+  [FileType.LABELS_SPATIALDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
+  [FileType.SHAPES_SPATIALDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
+  [FileType.OBS_SPOTS_SPATIALDATA_ZARR]: DataType.OBS_SPOTS,
+  [FileType.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
+  [FileType.OBS_SETS_SPATIALDATA_ZARR]: DataType.OBS_SETS,
   // For new file types to support old file types
   [FileType.OBS_EMBEDDING_CELLS_JSON]: DataType.OBS_EMBEDDING,
   [FileType.OBS_LOCATIONS_CELLS_JSON]: DataType.OBS_LOCATIONS,
@@ -686,10 +703,10 @@ const COMPONENT_COORDINATION_TYPES = {
   ]
 };
 const note = "This file is autogenerated by .changeset/post-changelog.mjs.";
-const version = "3.2.1";
-const date = "2023-09-13";
+const version = "3.3.0";
+const date = "2023-09-28";
 const branch = "changeset-release/main";
-const hash = "a118dd03";
+const hash = "4b4a99ea";
 const version$1 = {
   note,
   version,

package/dist-tsc/constant-relationships.d.ts

@@ -3,7 +3,7 @@
  * should correspond to one data type. Multiple file types
  * can map onto the same data type.
  */
-export const FILE_TYPE_DATA_TYPE_MAPPING: {
+export declare const FILE_TYPE_DATA_TYPE_MAPPING: {
     [x: string]: string;
 };
 /**
@@ -11,7 +11,7 @@ export const FILE_TYPE_DATA_TYPE_MAPPING: {
  * for matching using the coordinationValues field of file definitions.
  * This enables inferring default values, simplifying view config writing.
  */
-export const DATA_TYPE_COORDINATION_VALUE_USAGE: {
+export declare const DATA_TYPE_COORDINATION_VALUE_USAGE: {
     [x: string]: string[];
 };
 //# sourceMappingURL=constant-relationships.d.ts.map

package/dist-tsc/constant-relationships.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"constant-relationships.d.ts","sourceRoot":"","sources":["../src/constant-relationships.js"],"names":[],"mappings":"AAEA;;;;GAIG;AACH;;EAiDE;AAEF;;;;GAIG;AACH;;EAmCE"}
+{"version":3,"file":"constant-relationships.d.ts","sourceRoot":"","sources":["../src/constant-relationships.ts"],"names":[],"mappings":"AAEA;;;;GAIG;AACH,eAAO,MAAM,2BAA2B;;CAyDvC,CAAC;AAEF;;;;GAIG;AACH,eAAO,MAAM,kCAAkC;;CAmC9C,CAAC"}

package/dist-tsc/constant-relationships.js

@@ -37,6 +37,12 @@ export const FILE_TYPE_DATA_TYPE_MAPPING = {
     [FileType.OBS_SEGMENTATIONS_MUDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
     [FileType.OBS_LABELS_MUDATA_ZARR]: DataType.OBS_LABELS,
     [FileType.FEATURE_LABELS_MUDATA_ZARR]: DataType.FEATURE_LABELS,
+    [FileType.IMAGE_SPATIALDATA_ZARR]: DataType.IMAGE,
+    [FileType.LABELS_SPATIALDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
+    [FileType.SHAPES_SPATIALDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
+    [FileType.OBS_SPOTS_SPATIALDATA_ZARR]: DataType.OBS_SPOTS,
+    [FileType.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
+    [FileType.OBS_SETS_SPATIALDATA_ZARR]: DataType.OBS_SETS,
     // For new file types to support old file types
     [FileType.OBS_EMBEDDING_CELLS_JSON]: DataType.OBS_EMBEDDING,
     [FileType.OBS_LOCATIONS_CELLS_JSON]: DataType.OBS_LOCATIONS,

package/dist-tsc/constant-relationships.test.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"constant-relationships.test.d.ts","sourceRoot":"","sources":["../src/constant-relationships.test.js"],"names":[],"mappings":""}
+{"version":3,"file":"constant-relationships.test.d.ts","sourceRoot":"","sources":["../src/constant-relationships.test.ts"],"names":[],"mappings":""}

package/dist-tsc/constants.d.ts

@@ -1,199 +1,213 @@
-export namespace ViewType {
-    const DESCRIPTION: string;
-    const STATUS: string;
-    const SCATTERPLOT: string;
-    const SPATIAL: string;
-    const SPATIAL_BETA: string;
-    const HEATMAP: string;
-    const LAYER_CONTROLLER: string;
-    const LAYER_CONTROLLER_BETA: string;
-    const GENOMIC_PROFILES: string;
-    const GATING: string;
-    const FEATURE_LIST: string;
-    const OBS_SETS: string;
-    const OBS_SET_SIZES: string;
-    const OBS_SET_FEATURE_VALUE_DISTRIBUTION: string;
-    const FEATURE_VALUE_HISTOGRAM: string;
-}
-export namespace DataType {
-    export const OBS_LABELS: string;
-    export const OBS_EMBEDDING: string;
-    export const OBS_FEATURE_MATRIX: string;
-    const OBS_SETS_1: string;
-    export { OBS_SETS_1 as OBS_SETS };
-    export const FEATURE_LABELS: string;
-    export const IMAGE: string;
-    export const OBS_SEGMENTATIONS: string;
-    export const NEIGHBORHOODS: string;
-    const GENOMIC_PROFILES_1: string;
-    export { GENOMIC_PROFILES_1 as GENOMIC_PROFILES };
-    export const OBS_SPOTS: string;
-    export const OBS_POINTS: string;
-    export const OBS_LOCATIONS: string;
-}
-export namespace FileType {
-    const ANNDATA_ZARR: string;
-    const OBS_EMBEDDING_CSV: string;
-    const OBS_SPOTS_CSV: string;
-    const OBS_POINTS_CSV: string;
-    const OBS_LOCATIONS_CSV: string;
-    const OBS_LABELS_CSV: string;
-    const FEATURE_LABELS_CSV: string;
-    const OBS_FEATURE_MATRIX_CSV: string;
-    const OBS_SEGMENTATIONS_JSON: string;
-    const OBS_SETS_CSV: string;
-    const OBS_SETS_JSON: string;
-    const IMAGE_OME_ZARR: string;
-    const OBS_FEATURE_MATRIX_ANNDATA_ZARR: string;
-    const OBS_SETS_ANNDATA_ZARR: string;
-    const OBS_EMBEDDING_ANNDATA_ZARR: string;
-    const OBS_SPOTS_ANNDATA_ZARR: string;
-    const OBS_POINTS_ANNDATA_ZARR: string;
-    const OBS_LOCATIONS_ANNDATA_ZARR: string;
-    const OBS_SEGMENTATIONS_ANNDATA_ZARR: string;
-    const OBS_LABELS_ANNDATA_ZARR: string;
-    const FEATURE_LABELS_ANNDATA_ZARR: string;
-    const OBS_FEATURE_MATRIX_MUDATA_ZARR: string;
-    const OBS_SETS_MUDATA_ZARR: string;
-    const OBS_EMBEDDING_MUDATA_ZARR: string;
-    const OBS_SPOTS_MUDATA_ZARR: string;
-    const OBS_POINTS_MUDATA_ZARR: string;
-    const OBS_LOCATIONS_MUDATA_ZARR: string;
-    const OBS_SEGMENTATIONS_MUDATA_ZARR: string;
-    const OBS_LABELS_MUDATA_ZARR: string;
-    const FEATURE_LABELS_MUDATA_ZARR: string;
-    const GENOMIC_PROFILES_ZARR: string;
-    const NEIGHBORHOODS_JSON: string;
-    const IMAGE_OME_TIFF: string;
-    const OBS_SEGMENTATIONS_OME_TIFF: string;
-    const OBS_EMBEDDING_CELLS_JSON: string;
-    const OBS_SEGMENTATIONS_CELLS_JSON: string;
-    const OBS_LOCATIONS_CELLS_JSON: string;
-    const OBS_LABELS_CELLS_JSON: string;
-    const OBS_SETS_CELL_SETS_JSON: string;
-    const OBS_FEATURE_MATRIX_GENES_JSON: string;
-    const OBS_FEATURE_MATRIX_CLUSTERS_JSON: string;
-    const OBS_FEATURE_MATRIX_EXPRESSION_MATRIX_ZARR: string;
-    const IMAGE_RASTER_JSON: string;
-    const OBS_SEGMENTATIONS_RASTER_JSON: string;
-    const OBS_LOCATIONS_MOLECULES_JSON: string;
-    const OBS_LABELS_MOLECULES_JSON: string;
-    const CELLS_JSON: string;
-    const CELL_SETS_JSON: string;
-    const ANNDATA_CELL_SETS_ZARR: string;
-    const ANNDATA_CELLS_ZARR: string;
-    const EXPRESSION_MATRIX_ZARR: string;
-    const MOLECULES_JSON: string;
-    const RASTER_JSON: string;
-    const RASTER_OME_ZARR: string;
-    const CLUSTERS_JSON: string;
-    const GENES_JSON: string;
-    const ANNDATA_EXPRESSION_MATRIX_ZARR: string;
-}
-export namespace CoordinationType {
-    const META_COORDINATION_SCOPES: string;
-    const META_COORDINATION_SCOPES_BY: string;
-    const DATASET: string;
-    const OBS_TYPE: string;
-    const FEATURE_TYPE: string;
-    const FEATURE_VALUE_TYPE: string;
-    const OBS_LABELS_TYPE: string;
-    const EMBEDDING_TYPE: string;
-    const EMBEDDING_ZOOM: string;
-    const EMBEDDING_ROTATION: string;
-    const EMBEDDING_TARGET_X: string;
-    const EMBEDDING_TARGET_Y: string;
-    const EMBEDDING_TARGET_Z: string;
-    const EMBEDDING_OBS_SET_POLYGONS_VISIBLE: string;
-    const EMBEDDING_OBS_SET_LABELS_VISIBLE: string;
-    const EMBEDDING_OBS_SET_LABEL_SIZE: string;
-    const EMBEDDING_OBS_RADIUS: string;
-    const EMBEDDING_OBS_RADIUS_MODE: string;
-    const EMBEDDING_OBS_OPACITY: string;
-    const EMBEDDING_OBS_OPACITY_MODE: string;
-    const SPATIAL_ZOOM: string;
-    const SPATIAL_ROTATION: string;
-    const SPATIAL_TARGET_X: string;
-    const SPATIAL_TARGET_Y: string;
-    const SPATIAL_TARGET_Z: string;
-    const SPATIAL_TARGET_T: string;
-    const SPATIAL_ROTATION_X: string;
-    const SPATIAL_ROTATION_Y: string;
-    const SPATIAL_ROTATION_Z: string;
-    const SPATIAL_ROTATION_ORBIT: string;
-    const SPATIAL_ORBIT_AXIS: string;
-    const SPATIAL_AXIS_FIXED: string;
-    const HEATMAP_ZOOM_X: string;
-    const HEATMAP_ZOOM_Y: string;
-    const HEATMAP_TARGET_X: string;
-    const HEATMAP_TARGET_Y: string;
-    const OBS_FILTER: string;
-    const OBS_HIGHLIGHT: string;
-    const OBS_SET_SELECTION: string;
-    const OBS_SET_HIGHLIGHT: string;
-    const OBS_SET_EXPANSION: string;
-    const OBS_SET_COLOR: string;
-    const FEATURE_FILTER: string;
-    const FEATURE_HIGHLIGHT: string;
-    const FEATURE_SELECTION: string;
-    const FEATURE_VALUE_COLORMAP: string;
-    const FEATURE_VALUE_TRANSFORM: string;
-    const FEATURE_VALUE_COLORMAP_RANGE: string;
-    const OBS_COLOR_ENCODING: string;
-    const SPATIAL_IMAGE_LAYER: string;
-    const SPATIAL_SEGMENTATION_LAYER: string;
-    const SPATIAL_POINT_LAYER: string;
-    const SPATIAL_NEIGHBORHOOD_LAYER: string;
-    const GENOMIC_ZOOM_X: string;
-    const GENOMIC_ZOOM_Y: string;
-    const GENOMIC_TARGET_X: string;
-    const GENOMIC_TARGET_Y: string;
-    const ADDITIONAL_OBS_SETS: string;
-    const MOLECULE_HIGHLIGHT: string;
-    const GATING_FEATURE_SELECTION_X: string;
-    const GATING_FEATURE_SELECTION_Y: string;
-    const FEATURE_VALUE_TRANSFORM_COEFFICIENT: string;
-    const TOOLTIPS_VISIBLE: string;
-    const FILE_UID: string;
-    const IMAGE_LAYER: string;
-    const IMAGE_CHANNEL: string;
-    const SEGMENTATION_LAYER: string;
-    const SEGMENTATION_CHANNEL: string;
-    const SPATIAL_TARGET_C: string;
-    const SPATIAL_LAYER_VISIBLE: string;
-    const SPATIAL_LAYER_OPACITY: string;
-    const SPATIAL_LAYER_COLORMAP: string;
-    const SPATIAL_LAYER_TRANSPARENT_COLOR: string;
-    const SPATIAL_LAYER_MODEL_MATRIX: string;
-    const SPATIAL_SEGMENTATION_FILLED: string;
-    const SPATIAL_SEGMENTATION_STROKE_WIDTH: string;
-    const SPATIAL_CHANNEL_COLOR: string;
-    const SPATIAL_CHANNEL_VISIBLE: string;
-    const SPATIAL_CHANNEL_OPACITY: string;
-    const SPATIAL_CHANNEL_WINDOW: string;
-    const PHOTOMETRIC_INTERPRETATION: string;
-    const SPATIAL_RENDERING_MODE: string;
-    const VOLUMETRIC_RENDERING_ALGORITHM: string;
-    const SPATIAL_TARGET_RESOLUTION: string;
-    const SPATIAL_SLICE_X: string;
-    const SPATIAL_SLICE_Y: string;
-    const SPATIAL_SLICE_Z: string;
-    const SPOT_LAYER: string;
-    const POINT_LAYER: string;
-    const SPATIAL_SPOT_RADIUS: string;
-    const SPATIAL_SPOT_FILLED: string;
-    const SPATIAL_SPOT_STROKE_WIDTH: string;
-    const SPATIAL_LAYER_COLOR: string;
-    const PIXEL_HIGHLIGHT: string;
-    const TOOLTIP_CROSSHAIRS_VISIBLE: string;
-    const LEGEND_VISIBLE: string;
-    const SPATIAL_CHANNEL_LABELS_VISIBLE: string;
-    const SPATIAL_CHANNEL_LABELS_ORIENTATION: string;
-    const SPATIAL_CHANNEL_LABEL_SIZE: string;
-}
-export namespace STATUS {
-    const LOADING: string;
-    const SUCCESS: string;
-    const ERROR: string;
-}
+/**
+ * This file defines the current constant values.
+ * To deprecate a value, add it to ./constants-old.js
+ * with a corresponding log message.
+ */
+export declare const ViewType: {
+    DESCRIPTION: string;
+    STATUS: string;
+    SCATTERPLOT: string;
+    SPATIAL: string;
+    SPATIAL_BETA: string;
+    HEATMAP: string;
+    LAYER_CONTROLLER: string;
+    LAYER_CONTROLLER_BETA: string;
+    GENOMIC_PROFILES: string;
+    GATING: string;
+    FEATURE_LIST: string;
+    OBS_SETS: string;
+    OBS_SET_SIZES: string;
+    OBS_SET_FEATURE_VALUE_DISTRIBUTION: string;
+    FEATURE_VALUE_HISTOGRAM: string;
+};
+export declare const DataType: {
+    OBS_LABELS: string;
+    OBS_EMBEDDING: string;
+    OBS_FEATURE_MATRIX: string;
+    OBS_SETS: string;
+    FEATURE_LABELS: string;
+    IMAGE: string;
+    OBS_SEGMENTATIONS: string;
+    NEIGHBORHOODS: string;
+    GENOMIC_PROFILES: string;
+    OBS_SPOTS: string;
+    OBS_POINTS: string;
+    OBS_LOCATIONS: string;
+};
+export declare const FileType: {
+    ANNDATA_ZARR: string;
+    SPATIALDATA_ZARR: string;
+    OBS_EMBEDDING_CSV: string;
+    OBS_SPOTS_CSV: string;
+    OBS_POINTS_CSV: string;
+    OBS_LOCATIONS_CSV: string;
+    OBS_LABELS_CSV: string;
+    FEATURE_LABELS_CSV: string;
+    OBS_FEATURE_MATRIX_CSV: string;
+    OBS_SEGMENTATIONS_JSON: string;
+    OBS_SETS_CSV: string;
+    OBS_SETS_JSON: string;
+    IMAGE_OME_ZARR: string;
+    OBS_FEATURE_MATRIX_ANNDATA_ZARR: string;
+    OBS_SETS_ANNDATA_ZARR: string;
+    OBS_EMBEDDING_ANNDATA_ZARR: string;
+    OBS_SPOTS_ANNDATA_ZARR: string;
+    OBS_POINTS_ANNDATA_ZARR: string;
+    OBS_LOCATIONS_ANNDATA_ZARR: string;
+    OBS_SEGMENTATIONS_ANNDATA_ZARR: string;
+    OBS_LABELS_ANNDATA_ZARR: string;
+    FEATURE_LABELS_ANNDATA_ZARR: string;
+    IMAGE_SPATIALDATA_ZARR: string;
+    LABELS_SPATIALDATA_ZARR: string;
+    SHAPES_SPATIALDATA_ZARR: string;
+    OBS_FEATURE_MATRIX_SPATIALDATA_ZARR: string;
+    OBS_SETS_SPATIALDATA_ZARR: string;
+    OBS_SPOTS_SPATIALDATA_ZARR: string;
+    OBS_FEATURE_MATRIX_MUDATA_ZARR: string;
+    OBS_SETS_MUDATA_ZARR: string;
+    OBS_EMBEDDING_MUDATA_ZARR: string;
+    OBS_SPOTS_MUDATA_ZARR: string;
+    OBS_POINTS_MUDATA_ZARR: string;
+    OBS_LOCATIONS_MUDATA_ZARR: string;
+    OBS_SEGMENTATIONS_MUDATA_ZARR: string;
+    OBS_LABELS_MUDATA_ZARR: string;
+    FEATURE_LABELS_MUDATA_ZARR: string;
+    GENOMIC_PROFILES_ZARR: string;
+    NEIGHBORHOODS_JSON: string;
+    IMAGE_OME_TIFF: string;
+    OBS_SEGMENTATIONS_OME_TIFF: string;
+    OBS_EMBEDDING_CELLS_JSON: string;
+    OBS_SEGMENTATIONS_CELLS_JSON: string;
+    OBS_LOCATIONS_CELLS_JSON: string;
+    OBS_LABELS_CELLS_JSON: string;
+    OBS_SETS_CELL_SETS_JSON: string;
+    OBS_FEATURE_MATRIX_GENES_JSON: string;
+    OBS_FEATURE_MATRIX_CLUSTERS_JSON: string;
+    OBS_FEATURE_MATRIX_EXPRESSION_MATRIX_ZARR: string;
+    IMAGE_RASTER_JSON: string;
+    OBS_SEGMENTATIONS_RASTER_JSON: string;
+    OBS_LOCATIONS_MOLECULES_JSON: string;
+    OBS_LABELS_MOLECULES_JSON: string;
+    CELLS_JSON: string;
+    CELL_SETS_JSON: string;
+    ANNDATA_CELL_SETS_ZARR: string;
+    ANNDATA_CELLS_ZARR: string;
+    EXPRESSION_MATRIX_ZARR: string;
+    MOLECULES_JSON: string;
+    RASTER_JSON: string;
+    RASTER_OME_ZARR: string;
+    CLUSTERS_JSON: string;
+    GENES_JSON: string;
+    ANNDATA_EXPRESSION_MATRIX_ZARR: string;
+};
+/**
+ * Constants representing names of coordination types,
+ * to help prevent typos.
+ */
+export declare const CoordinationType: {
+    META_COORDINATION_SCOPES: string;
+    META_COORDINATION_SCOPES_BY: string;
+    DATASET: string;
+    OBS_TYPE: string;
+    FEATURE_TYPE: string;
+    FEATURE_VALUE_TYPE: string;
+    OBS_LABELS_TYPE: string;
+    EMBEDDING_TYPE: string;
+    EMBEDDING_ZOOM: string;
+    EMBEDDING_ROTATION: string;
+    EMBEDDING_TARGET_X: string;
+    EMBEDDING_TARGET_Y: string;
+    EMBEDDING_TARGET_Z: string;
+    EMBEDDING_OBS_SET_POLYGONS_VISIBLE: string;
+    EMBEDDING_OBS_SET_LABELS_VISIBLE: string;
+    EMBEDDING_OBS_SET_LABEL_SIZE: string;
+    EMBEDDING_OBS_RADIUS: string;
+    EMBEDDING_OBS_RADIUS_MODE: string;
+    EMBEDDING_OBS_OPACITY: string;
+    EMBEDDING_OBS_OPACITY_MODE: string;
+    SPATIAL_ZOOM: string;
+    SPATIAL_ROTATION: string;
+    SPATIAL_TARGET_X: string;
+    SPATIAL_TARGET_Y: string;
+    SPATIAL_TARGET_Z: string;
+    SPATIAL_TARGET_T: string;
+    SPATIAL_ROTATION_X: string;
+    SPATIAL_ROTATION_Y: string;
+    SPATIAL_ROTATION_Z: string;
+    SPATIAL_ROTATION_ORBIT: string;
+    SPATIAL_ORBIT_AXIS: string;
+    SPATIAL_AXIS_FIXED: string;
+    HEATMAP_ZOOM_X: string;
+    HEATMAP_ZOOM_Y: string;
+    HEATMAP_TARGET_X: string;
+    HEATMAP_TARGET_Y: string;
+    OBS_FILTER: string;
+    OBS_HIGHLIGHT: string;
+    OBS_SET_SELECTION: string;
+    OBS_SET_HIGHLIGHT: string;
+    OBS_SET_EXPANSION: string;
+    OBS_SET_COLOR: string;
+    FEATURE_FILTER: string;
+    FEATURE_HIGHLIGHT: string;
+    FEATURE_SELECTION: string;
+    FEATURE_VALUE_COLORMAP: string;
+    FEATURE_VALUE_TRANSFORM: string;
+    FEATURE_VALUE_COLORMAP_RANGE: string;
+    OBS_COLOR_ENCODING: string;
+    SPATIAL_IMAGE_LAYER: string;
+    SPATIAL_SEGMENTATION_LAYER: string;
+    SPATIAL_POINT_LAYER: string;
+    SPATIAL_NEIGHBORHOOD_LAYER: string;
+    GENOMIC_ZOOM_X: string;
+    GENOMIC_ZOOM_Y: string;
+    GENOMIC_TARGET_X: string;
+    GENOMIC_TARGET_Y: string;
+    ADDITIONAL_OBS_SETS: string;
+    MOLECULE_HIGHLIGHT: string;
+    GATING_FEATURE_SELECTION_X: string;
+    GATING_FEATURE_SELECTION_Y: string;
+    FEATURE_VALUE_TRANSFORM_COEFFICIENT: string;
+    TOOLTIPS_VISIBLE: string;
+    FILE_UID: string;
+    IMAGE_LAYER: string;
+    IMAGE_CHANNEL: string;
+    SEGMENTATION_LAYER: string;
+    SEGMENTATION_CHANNEL: string;
+    SPATIAL_TARGET_C: string;
+    SPATIAL_LAYER_VISIBLE: string;
+    SPATIAL_LAYER_OPACITY: string;
+    SPATIAL_LAYER_COLORMAP: string;
+    SPATIAL_LAYER_TRANSPARENT_COLOR: string;
+    SPATIAL_LAYER_MODEL_MATRIX: string;
+    SPATIAL_SEGMENTATION_FILLED: string;
+    SPATIAL_SEGMENTATION_STROKE_WIDTH: string;
+    SPATIAL_CHANNEL_COLOR: string;
+    SPATIAL_CHANNEL_VISIBLE: string;
+    SPATIAL_CHANNEL_OPACITY: string;
+    SPATIAL_CHANNEL_WINDOW: string;
+    PHOTOMETRIC_INTERPRETATION: string;
+    SPATIAL_RENDERING_MODE: string;
+    VOLUMETRIC_RENDERING_ALGORITHM: string;
+    SPATIAL_TARGET_RESOLUTION: string;
+    SPATIAL_SLICE_X: string;
+    SPATIAL_SLICE_Y: string;
+    SPATIAL_SLICE_Z: string;
+    SPOT_LAYER: string;
+    POINT_LAYER: string;
+    SPATIAL_SPOT_RADIUS: string;
+    SPATIAL_SPOT_FILLED: string;
+    SPATIAL_SPOT_STROKE_WIDTH: string;
+    SPATIAL_LAYER_COLOR: string;
+    PIXEL_HIGHLIGHT: string;
+    TOOLTIP_CROSSHAIRS_VISIBLE: string;
+    LEGEND_VISIBLE: string;
+    SPATIAL_CHANNEL_LABELS_VISIBLE: string;
+    SPATIAL_CHANNEL_LABELS_ORIENTATION: string;
+    SPATIAL_CHANNEL_LABEL_SIZE: string;
+};
+export declare const STATUS: {
+    LOADING: string;
+    SUCCESS: string;
+    ERROR: string;
+};
 //# sourceMappingURL=constants.d.ts.map

package/dist-tsc/constants.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../src/constants.js"],"names":[],"mappings":""}
+{"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../src/constants.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;CAgBpB,CAAC;AAEF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;CAapB,CAAC;AAGF,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAmFpB,CAAC;AAEF;;;GAGG;AACH,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CA0G5B,CAAC;AAEF,eAAO,MAAM,MAAM;;;;CAIlB,CAAC"}

package/dist-tsc/constants.js

@@ -37,6 +37,7 @@ export const DataType = {
 export const FileType = {
     // Joint file types
     ANNDATA_ZARR: 'anndata.zarr',
+    SPATIALDATA_ZARR: 'spatialdata.zarr',
     // Atomic file types
     OBS_EMBEDDING_CSV: 'obsEmbedding.csv',
     OBS_SPOTS_CSV: 'obsSpots.csv',
@@ -59,6 +60,16 @@ export const FileType = {
     OBS_SEGMENTATIONS_ANNDATA_ZARR: 'obsSegmentations.anndata.zarr',
     OBS_LABELS_ANNDATA_ZARR: 'obsLabels.anndata.zarr',
     FEATURE_LABELS_ANNDATA_ZARR: 'featureLabels.anndata.zarr',
+    // SpatialData
+    IMAGE_SPATIALDATA_ZARR: 'image.spatialdata.zarr',
+    LABELS_SPATIALDATA_ZARR: 'labels.spatialdata.zarr',
+    SHAPES_SPATIALDATA_ZARR: 'shapes.spatialdata.zarr',
+    OBS_FEATURE_MATRIX_SPATIALDATA_ZARR: 'obsFeatureMatrix.spatialdata.zarr',
+    OBS_SETS_SPATIALDATA_ZARR: 'obsSets.spatialdata.zarr',
+    OBS_SPOTS_SPATIALDATA_ZARR: 'obsSpots.spatialdata.zarr',
+    // TODO:
+    // OBS_POINTS_SPATIALDATA_ZARR: 'obsPoints.spatialdata.zarr',
+    // OBS_LOCATIONS_SPATIALDATA_ZARR: 'obsLocations.spatialdata.zarr',
     // MuData
     OBS_FEATURE_MATRIX_MUDATA_ZARR: 'obsFeatureMatrix.mudata.zarr',
     OBS_SETS_MUDATA_ZARR: 'obsSets.mudata.zarr',

package/dist-tsc/coordination.d.ts

@@ -1,4 +1,4 @@
-export const AUTO_INDEPENDENT_COORDINATION_TYPES: string[];
+export declare const AUTO_INDEPENDENT_COORDINATION_TYPES: string[];
 /**
    * Mapping from component type to
    * supported coordination object types.
@@ -7,7 +7,7 @@ export const AUTO_INDEPENDENT_COORDINATION_TYPES: string[];
    * need to get/set.
    * Keys here are the component registry keys.
    */
-export const COMPONENT_COORDINATION_TYPES: {
+export declare const COMPONENT_COORDINATION_TYPES: {
     [x: string]: string[];
     higlass: string[];
 };

package/dist-tsc/coordination.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"coordination.d.ts","sourceRoot":"","sources":["../src/coordination.js"],"names":[],"mappings":"AASA,2DAcE;AAEF;;;;;;;KAOK;AACL;;;EA4WE"}
+{"version":3,"file":"coordination.d.ts","sourceRoot":"","sources":["../src/coordination.ts"],"names":[],"mappings":"AASA,eAAO,MAAM,mCAAmC,UAc/C,CAAC;AAEF;;;;;;;KAOK;AACL,eAAO,MAAM,4BAA4B;;;CA4WxC,CAAC"}

package/dist-tsc/index.d.ts

@@ -1,4 +1,5 @@
-export { ViewType, DataType, FileType, CoordinationType, STATUS } from "./constants.js";
-export { FILE_TYPE_DATA_TYPE_MAPPING, DATA_TYPE_COORDINATION_VALUE_USAGE } from "./constant-relationships.js";
-export { AUTO_INDEPENDENT_COORDINATION_TYPES, COMPONENT_COORDINATION_TYPES } from "./coordination.js";
+export { ViewType, DataType, FileType, CoordinationType, STATUS, } from './constants.js';
+export { FILE_TYPE_DATA_TYPE_MAPPING, DATA_TYPE_COORDINATION_VALUE_USAGE } from './constant-relationships.js';
+export { AUTO_INDEPENDENT_COORDINATION_TYPES, COMPONENT_COORDINATION_TYPES } from './coordination.js';
+export { default as META_VERSION } from './version.json';
 //# sourceMappingURL=index.d.ts.map

package/dist-tsc/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.js"],"names":[],"mappings":""}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,QAAQ,EAAE,QAAQ,EAAE,QAAQ,EAAE,gBAAgB,EAAE,MAAM,GACvD,MAAM,gBAAgB,CAAC;AACxB,OAAO,EAAE,2BAA2B,EAAE,kCAAkC,EAAE,MAAM,6BAA6B,CAAC;AAC9G,OAAO,EAAE,mCAAmC,EAAE,4BAA4B,EAAE,MAAM,mBAAmB,CAAC;AACtG,OAAO,EAAE,OAAO,IAAI,YAAY,EAAE,MAAM,gBAAgB,CAAC"}

package/dist-tsc/version.json

@@ -1,7 +1,7 @@
 {
     "note": "This file is autogenerated by .changeset/post-changelog.mjs.",
-    "version": "3.2.1",
-    "date": "2023-09-13",
+    "version": "3.3.0",
+    "date": "2023-09-28",
     "branch": "changeset-release/main",
-    "hash": "a118dd03"
+    "hash": "4b4a99ea"
 }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/constants-internal",
-  "version": "3.2.1",
+  "version": "3.3.0",
   "author": "Gehlenborg Lab",
   "homepage": "http://vitessce.io",
   "repository": {

package/src/{constant-relationships.js → constant-relationships.ts}

@@ -38,6 +38,14 @@ export const FILE_TYPE_DATA_TYPE_MAPPING = {
   [FileType.OBS_SEGMENTATIONS_MUDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
   [FileType.OBS_LABELS_MUDATA_ZARR]: DataType.OBS_LABELS,
   [FileType.FEATURE_LABELS_MUDATA_ZARR]: DataType.FEATURE_LABELS,
+
+  [FileType.IMAGE_SPATIALDATA_ZARR]: DataType.IMAGE,
+  [FileType.LABELS_SPATIALDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
+  [FileType.SHAPES_SPATIALDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
+  [FileType.OBS_SPOTS_SPATIALDATA_ZARR]: DataType.OBS_SPOTS,
+  [FileType.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
+  [FileType.OBS_SETS_SPATIALDATA_ZARR]: DataType.OBS_SETS,
+
   // For new file types to support old file types
   [FileType.OBS_EMBEDDING_CELLS_JSON]: DataType.OBS_EMBEDDING,
   [FileType.OBS_LOCATIONS_CELLS_JSON]: DataType.OBS_LOCATIONS,

package/src/{constants.js → constants.ts}

@@ -40,6 +40,7 @@ export const DataType = {
 export const FileType = {
   // Joint file types
   ANNDATA_ZARR: 'anndata.zarr',
+  SPATIALDATA_ZARR: 'spatialdata.zarr',
   // Atomic file types
   OBS_EMBEDDING_CSV: 'obsEmbedding.csv',
   OBS_SPOTS_CSV: 'obsSpots.csv',
@@ -62,6 +63,16 @@ export const FileType = {
   OBS_SEGMENTATIONS_ANNDATA_ZARR: 'obsSegmentations.anndata.zarr',
   OBS_LABELS_ANNDATA_ZARR: 'obsLabels.anndata.zarr',
   FEATURE_LABELS_ANNDATA_ZARR: 'featureLabels.anndata.zarr',
+  // SpatialData
+  IMAGE_SPATIALDATA_ZARR: 'image.spatialdata.zarr',
+  LABELS_SPATIALDATA_ZARR: 'labels.spatialdata.zarr',
+  SHAPES_SPATIALDATA_ZARR: 'shapes.spatialdata.zarr',
+  OBS_FEATURE_MATRIX_SPATIALDATA_ZARR: 'obsFeatureMatrix.spatialdata.zarr',
+  OBS_SETS_SPATIALDATA_ZARR: 'obsSets.spatialdata.zarr',
+  OBS_SPOTS_SPATIALDATA_ZARR: 'obsSpots.spatialdata.zarr',
+  // TODO:
+  // OBS_POINTS_SPATIALDATA_ZARR: 'obsPoints.spatialdata.zarr',
+  // OBS_LOCATIONS_SPATIALDATA_ZARR: 'obsLocations.spatialdata.zarr',
   // MuData
   OBS_FEATURE_MATRIX_MUDATA_ZARR: 'obsFeatureMatrix.mudata.zarr',
   OBS_SETS_MUDATA_ZARR: 'obsSets.mudata.zarr',

package/src/version.json

@@ -1,7 +1,7 @@
 {
   "note": "This file is autogenerated by .changeset/post-changelog.mjs.",
-  "version": "3.2.1",
-  "date": "2023-09-13",
+  "version": "3.3.0",
+  "date": "2023-09-28",
   "branch": "changeset-release/main",
-  "hash": "a118dd03"
+  "hash": "4b4a99ea"
 }