@vitessce/constants-internal 3.1.2 → 3.2.0

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Files changed (13) hide show
  1. package/dist/index.js +199 -8
  2. package/dist-tsc/constant-relationships.d.ts.map +1 -1
  3. package/dist-tsc/constant-relationships.js +12 -0
  4. package/dist-tsc/constants.d.ts +48 -1
  5. package/dist-tsc/constants.js +51 -3
  6. package/dist-tsc/coordination.d.ts.map +1 -1
  7. package/dist-tsc/coordination.js +126 -0
  8. package/dist-tsc/version.json +3 -3
  9. package/package.json +1 -1
  10. package/src/constant-relationships.js +12 -0
  11. package/src/constants.js +51 -3
  12. package/src/coordination.js +126 -0
  13. package/src/version.json +3 -3
package/dist/index.js CHANGED
@@ -3,8 +3,10 @@ const ViewType = {
3
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  STATUS: "status",
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  SCATTERPLOT: "scatterplot",
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  SPATIAL: "spatial",
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+ SPATIAL_BETA: "spatialBeta",
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  HEATMAP: "heatmap",
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  LAYER_CONTROLLER: "layerController",
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+ LAYER_CONTROLLER_BETA: "layerControllerBeta",
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  GENOMIC_PROFILES: "genomicProfiles",
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  GATING: "gating",
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  FEATURE_LIST: "featureList",
@@ -16,20 +18,24 @@ const ViewType = {
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  const DataType = {
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  OBS_LABELS: "obsLabels",
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  OBS_EMBEDDING: "obsEmbedding",
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- OBS_LOCATIONS: "obsLocations",
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  OBS_FEATURE_MATRIX: "obsFeatureMatrix",
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  OBS_SETS: "obsSets",
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  FEATURE_LABELS: "featureLabels",
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  IMAGE: "image",
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  OBS_SEGMENTATIONS: "obsSegmentations",
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  NEIGHBORHOODS: "neighborhoods",
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- GENOMIC_PROFILES: "genomic-profiles"
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+ GENOMIC_PROFILES: "genomic-profiles",
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+ OBS_SPOTS: "obsSpots",
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+ OBS_POINTS: "obsPoints",
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+ OBS_LOCATIONS: "obsLocations"
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  };
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  const FileType = {
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  // Joint file types
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  ANNDATA_ZARR: "anndata.zarr",
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  // Atomic file types
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  OBS_EMBEDDING_CSV: "obsEmbedding.csv",
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+ OBS_SPOTS_CSV: "obsSpots.csv",
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+ OBS_POINTS_CSV: "obsPoints.csv",
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  OBS_LOCATIONS_CSV: "obsLocations.csv",
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  OBS_LABELS_CSV: "obsLabels.csv",
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  FEATURE_LABELS_CSV: "featureLabels.csv",
@@ -42,6 +48,8 @@ const FileType = {
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  OBS_FEATURE_MATRIX_ANNDATA_ZARR: "obsFeatureMatrix.anndata.zarr",
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  OBS_SETS_ANNDATA_ZARR: "obsSets.anndata.zarr",
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  OBS_EMBEDDING_ANNDATA_ZARR: "obsEmbedding.anndata.zarr",
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+ OBS_SPOTS_ANNDATA_ZARR: "obsSpots.anndata.zarr",
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+ OBS_POINTS_ANNDATA_ZARR: "obsPoints.anndata.zarr",
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  OBS_LOCATIONS_ANNDATA_ZARR: "obsLocations.anndata.zarr",
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  OBS_SEGMENTATIONS_ANNDATA_ZARR: "obsSegmentations.anndata.zarr",
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  OBS_LABELS_ANNDATA_ZARR: "obsLabels.anndata.zarr",
@@ -50,6 +58,8 @@ const FileType = {
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  OBS_FEATURE_MATRIX_MUDATA_ZARR: "obsFeatureMatrix.mudata.zarr",
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  OBS_SETS_MUDATA_ZARR: "obsSets.mudata.zarr",
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  OBS_EMBEDDING_MUDATA_ZARR: "obsEmbedding.mudata.zarr",
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+ OBS_SPOTS_MUDATA_ZARR: "obsSpots.mudata.zarr",
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+ OBS_POINTS_MUDATA_ZARR: "obsPoints.mudata.zarr",
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  OBS_LOCATIONS_MUDATA_ZARR: "obsLocations.mudata.zarr",
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  OBS_SEGMENTATIONS_MUDATA_ZARR: "obsSegmentations.mudata.zarr",
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  OBS_LABELS_MUDATA_ZARR: "obsLabels.mudata.zarr",
@@ -93,10 +103,8 @@ const FileType = {
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  ANNDATA_EXPRESSION_MATRIX_ZARR: "anndata-expression-matrix.zarr"
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  };
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  const CoordinationType = {
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- // Meta coordination scopes
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  META_COORDINATION_SCOPES: "metaCoordinationScopes",
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  META_COORDINATION_SCOPES_BY: "metaCoordinationScopesBy",
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- // Other coordination scopes
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  DATASET: "dataset",
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  // Entity types
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  OBS_TYPE: "obsType",
@@ -122,6 +130,7 @@ const CoordinationType = {
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  SPATIAL_TARGET_X: "spatialTargetX",
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  SPATIAL_TARGET_Y: "spatialTargetY",
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  SPATIAL_TARGET_Z: "spatialTargetZ",
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+ SPATIAL_TARGET_T: "spatialTargetT",
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  SPATIAL_ROTATION_X: "spatialRotationX",
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  SPATIAL_ROTATION_Y: "spatialRotationY",
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  SPATIAL_ROTATION_Z: "spatialRotationZ",
@@ -159,7 +168,51 @@ const CoordinationType = {
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  GATING_FEATURE_SELECTION_X: "gatingFeatureSelectionX",
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  GATING_FEATURE_SELECTION_Y: "gatingFeatureSelectionY",
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  FEATURE_VALUE_TRANSFORM_COEFFICIENT: "featureValueTransformCoefficient",
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- TOOLTIPS_VISIBLE: "tooltipsVisible"
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+ TOOLTIPS_VISIBLE: "tooltipsVisible",
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+ FILE_UID: "fileUid",
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+ IMAGE_LAYER: "imageLayer",
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+ IMAGE_CHANNEL: "imageChannel",
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+ SEGMENTATION_LAYER: "segmentationLayer",
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+ SEGMENTATION_CHANNEL: "segmentationChannel",
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+ SPATIAL_TARGET_C: "spatialTargetC",
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+ SPATIAL_LAYER_VISIBLE: "spatialLayerVisible",
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+ SPATIAL_LAYER_OPACITY: "spatialLayerOpacity",
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+ SPATIAL_LAYER_COLORMAP: "spatialLayerColormap",
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+ SPATIAL_LAYER_TRANSPARENT_COLOR: "spatialLayerTransparentColor",
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+ SPATIAL_LAYER_MODEL_MATRIX: "spatialLayerModelMatrix",
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+ SPATIAL_SEGMENTATION_FILLED: "spatialSegmentationFilled",
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+ SPATIAL_SEGMENTATION_STROKE_WIDTH: "spatialSegmentationStrokeWidth",
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+ SPATIAL_CHANNEL_COLOR: "spatialChannelColor",
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+ SPATIAL_CHANNEL_VISIBLE: "spatialChannelVisible",
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+ SPATIAL_CHANNEL_OPACITY: "spatialChannelOpacity",
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+ SPATIAL_CHANNEL_WINDOW: "spatialChannelWindow",
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+ PHOTOMETRIC_INTERPRETATION: "photometricInterpretation",
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+ // For 3D volume rendering
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+ SPATIAL_RENDERING_MODE: "spatialRenderingMode",
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+ // For whole spatial view
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+ VOLUMETRIC_RENDERING_ALGORITHM: "volumetricRenderingAlgorithm",
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+ // Could be per-image-layer
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+ SPATIAL_TARGET_RESOLUTION: "spatialTargetResolution",
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+ // Per-spatial-layer
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+ // For clipping plane sliders
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+ SPATIAL_SLICE_X: "spatialSliceX",
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+ SPATIAL_SLICE_Y: "spatialSliceY",
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+ SPATIAL_SLICE_Z: "spatialSliceZ",
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+ // For spatial spot and point layers
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+ SPOT_LAYER: "spotLayer",
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+ POINT_LAYER: "pointLayer",
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+ SPATIAL_SPOT_RADIUS: "spatialSpotRadius",
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+ // In micrometers?
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+ SPATIAL_SPOT_FILLED: "spatialSpotFilled",
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+ SPATIAL_SPOT_STROKE_WIDTH: "spatialSpotStrokeWidth",
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+ SPATIAL_LAYER_COLOR: "spatialLayerColor",
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+ PIXEL_HIGHLIGHT: "pixelHighlight",
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+ // Per-image-layer
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+ TOOLTIP_CROSSHAIRS_VISIBLE: "tooltipCrosshairsVisible",
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+ LEGEND_VISIBLE: "legendVisible",
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+ SPATIAL_CHANNEL_LABELS_VISIBLE: "spatialChannelLabelsVisible",
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+ SPATIAL_CHANNEL_LABELS_ORIENTATION: "spatialChannelLabelsOrientation",
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+ SPATIAL_CHANNEL_LABEL_SIZE: "spatialChannelLabelSize"
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  };
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  const STATUS = {
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  LOADING: "loading",
@@ -169,6 +222,8 @@ const STATUS = {
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  const FILE_TYPE_DATA_TYPE_MAPPING = {
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  // For new file types
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  [FileType.OBS_EMBEDDING_CSV]: DataType.OBS_EMBEDDING,
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+ [FileType.OBS_SPOTS_CSV]: DataType.OBS_SPOTS,
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+ [FileType.OBS_POINTS_CSV]: DataType.OBS_POINTS,
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  [FileType.OBS_LOCATIONS_CSV]: DataType.OBS_LOCATIONS,
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  [FileType.OBS_LABELS_CSV]: DataType.OBS_LABELS,
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  [FileType.FEATURE_LABELS_CSV]: DataType.FEATURE_LABELS,
@@ -180,6 +235,8 @@ const FILE_TYPE_DATA_TYPE_MAPPING = {
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  [FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
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  [FileType.OBS_SETS_ANNDATA_ZARR]: DataType.OBS_SETS,
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  [FileType.OBS_EMBEDDING_ANNDATA_ZARR]: DataType.OBS_EMBEDDING,
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+ [FileType.OBS_SPOTS_ANNDATA_ZARR]: DataType.OBS_SPOTS,
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+ [FileType.OBS_POINTS_ANNDATA_ZARR]: DataType.OBS_POINTS,
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  [FileType.OBS_LOCATIONS_ANNDATA_ZARR]: DataType.OBS_LOCATIONS,
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  [FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
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  [FileType.OBS_LABELS_ANNDATA_ZARR]: DataType.OBS_LABELS,
@@ -189,6 +246,8 @@ const FILE_TYPE_DATA_TYPE_MAPPING = {
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  [FileType.OBS_FEATURE_MATRIX_MUDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
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  [FileType.OBS_SETS_MUDATA_ZARR]: DataType.OBS_SETS,
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  [FileType.OBS_EMBEDDING_MUDATA_ZARR]: DataType.OBS_EMBEDDING,
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+ [FileType.OBS_SPOTS_MUDATA_ZARR]: DataType.OBS_SPOTS,
250
+ [FileType.OBS_POINTS_MUDATA_ZARR]: DataType.OBS_POINTS,
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  [FileType.OBS_LOCATIONS_MUDATA_ZARR]: DataType.OBS_LOCATIONS,
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  [FileType.OBS_SEGMENTATIONS_MUDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
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  [FileType.OBS_LABELS_MUDATA_ZARR]: DataType.OBS_LABELS,
@@ -218,6 +277,12 @@ const DATA_TYPE_COORDINATION_VALUE_USAGE = {
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  CoordinationType.OBS_TYPE,
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  CoordinationType.EMBEDDING_TYPE
220
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  ],
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+ [DataType.OBS_SPOTS]: [
281
+ CoordinationType.OBS_TYPE
282
+ ],
283
+ [DataType.OBS_POINTS]: [
284
+ CoordinationType.OBS_TYPE
285
+ ],
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  [DataType.OBS_LOCATIONS]: [
222
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  CoordinationType.OBS_TYPE
223
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  ],
@@ -357,6 +422,77 @@ const COMPONENT_COORDINATION_TYPES = {
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  CoordinationType.MOLECULE_HIGHLIGHT,
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  CoordinationType.TOOLTIPS_VISIBLE
359
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  ],
425
+ [ViewType.SPATIAL_BETA]: [
426
+ CoordinationType.META_COORDINATION_SCOPES,
427
+ CoordinationType.META_COORDINATION_SCOPES_BY,
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+ CoordinationType.DATASET,
429
+ CoordinationType.OBS_TYPE,
430
+ CoordinationType.OBS_LABELS_TYPE,
431
+ CoordinationType.FEATURE_TYPE,
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+ CoordinationType.FEATURE_VALUE_TYPE,
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+ CoordinationType.SPATIAL_ZOOM,
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+ CoordinationType.SPATIAL_ROTATION,
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+ CoordinationType.SPATIAL_POINT_LAYER,
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+ CoordinationType.SPATIAL_NEIGHBORHOOD_LAYER,
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+ CoordinationType.SPATIAL_TARGET_X,
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+ CoordinationType.SPATIAL_TARGET_Y,
439
+ CoordinationType.SPATIAL_TARGET_Z,
440
+ CoordinationType.SPATIAL_TARGET_T,
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+ CoordinationType.SPATIAL_ROTATION_X,
442
+ CoordinationType.SPATIAL_ROTATION_Y,
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+ CoordinationType.SPATIAL_ROTATION_Z,
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+ CoordinationType.SPATIAL_ROTATION_ORBIT,
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+ CoordinationType.SPATIAL_ORBIT_AXIS,
446
+ CoordinationType.SPATIAL_AXIS_FIXED,
447
+ CoordinationType.OBS_FILTER,
448
+ CoordinationType.OBS_HIGHLIGHT,
449
+ CoordinationType.OBS_SET_SELECTION,
450
+ CoordinationType.OBS_SET_HIGHLIGHT,
451
+ CoordinationType.OBS_SET_COLOR,
452
+ CoordinationType.FEATURE_HIGHLIGHT,
453
+ CoordinationType.FEATURE_SELECTION,
454
+ CoordinationType.FEATURE_VALUE_COLORMAP,
455
+ CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
456
+ CoordinationType.OBS_COLOR_ENCODING,
457
+ CoordinationType.ADDITIONAL_OBS_SETS,
458
+ CoordinationType.MOLECULE_HIGHLIGHT,
459
+ CoordinationType.TOOLTIPS_VISIBLE,
460
+ CoordinationType.FILE_UID,
461
+ CoordinationType.SPATIAL_TARGET_C,
462
+ CoordinationType.SPATIAL_LAYER_VISIBLE,
463
+ CoordinationType.SPATIAL_LAYER_OPACITY,
464
+ CoordinationType.SPATIAL_LAYER_COLORMAP,
465
+ CoordinationType.SPATIAL_LAYER_TRANSPARENT_COLOR,
466
+ CoordinationType.SPATIAL_LAYER_MODEL_MATRIX,
467
+ CoordinationType.SPATIAL_CHANNEL_COLOR,
468
+ CoordinationType.SPATIAL_SEGMENTATION_FILLED,
469
+ CoordinationType.SPATIAL_SEGMENTATION_STROKE_WIDTH,
470
+ CoordinationType.IMAGE_LAYER,
471
+ CoordinationType.SEGMENTATION_LAYER,
472
+ CoordinationType.IMAGE_CHANNEL,
473
+ CoordinationType.SEGMENTATION_CHANNEL,
474
+ CoordinationType.SPATIAL_CHANNEL_VISIBLE,
475
+ CoordinationType.SPATIAL_CHANNEL_OPACITY,
476
+ CoordinationType.SPATIAL_CHANNEL_WINDOW,
477
+ CoordinationType.SPATIAL_RENDERING_MODE,
478
+ CoordinationType.VOLUMETRIC_RENDERING_ALGORITHM,
479
+ CoordinationType.SPATIAL_TARGET_RESOLUTION,
480
+ CoordinationType.SPATIAL_SLICE_X,
481
+ CoordinationType.SPATIAL_SLICE_Y,
482
+ CoordinationType.SPATIAL_SLICE_Z,
483
+ CoordinationType.SPOT_LAYER,
484
+ CoordinationType.POINT_LAYER,
485
+ CoordinationType.SPATIAL_SPOT_RADIUS,
486
+ CoordinationType.SPATIAL_SPOT_FILLED,
487
+ CoordinationType.SPATIAL_SPOT_STROKE_WIDTH,
488
+ CoordinationType.SPATIAL_LAYER_COLOR,
489
+ CoordinationType.PIXEL_HIGHLIGHT,
490
+ CoordinationType.TOOLTIP_CROSSHAIRS_VISIBLE,
491
+ CoordinationType.LEGEND_VISIBLE,
492
+ CoordinationType.SPATIAL_CHANNEL_LABELS_VISIBLE,
493
+ CoordinationType.SPATIAL_CHANNEL_LABELS_ORIENTATION,
494
+ CoordinationType.SPATIAL_CHANNEL_LABEL_SIZE
495
+ ],
360
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  [ViewType.HEATMAP]: [
361
497
  CoordinationType.DATASET,
362
498
  CoordinationType.OBS_TYPE,
@@ -462,6 +598,61 @@ const COMPONENT_COORDINATION_TYPES = {
462
598
  CoordinationType.SPATIAL_ROTATION_ORBIT,
463
599
  CoordinationType.SPATIAL_ORBIT_AXIS
464
600
  ],
601
+ [ViewType.LAYER_CONTROLLER_BETA]: [
602
+ CoordinationType.META_COORDINATION_SCOPES,
603
+ CoordinationType.META_COORDINATION_SCOPES_BY,
604
+ CoordinationType.DATASET,
605
+ CoordinationType.OBS_TYPE,
606
+ CoordinationType.FEATURE_TYPE,
607
+ CoordinationType.FEATURE_VALUE_TYPE,
608
+ CoordinationType.SPATIAL_POINT_LAYER,
609
+ CoordinationType.SPATIAL_NEIGHBORHOOD_LAYER,
610
+ CoordinationType.SPATIAL_ZOOM,
611
+ CoordinationType.SPATIAL_TARGET_X,
612
+ CoordinationType.SPATIAL_TARGET_Y,
613
+ CoordinationType.SPATIAL_TARGET_Z,
614
+ CoordinationType.SPATIAL_TARGET_T,
615
+ CoordinationType.SPATIAL_ROTATION_X,
616
+ CoordinationType.SPATIAL_ROTATION_Y,
617
+ CoordinationType.SPATIAL_ROTATION_Z,
618
+ CoordinationType.SPATIAL_ROTATION_ORBIT,
619
+ CoordinationType.SPATIAL_ORBIT_AXIS,
620
+ CoordinationType.FILE_UID,
621
+ CoordinationType.SPATIAL_TARGET_C,
622
+ CoordinationType.SPATIAL_LAYER_VISIBLE,
623
+ CoordinationType.SPATIAL_LAYER_OPACITY,
624
+ CoordinationType.SPATIAL_LAYER_COLORMAP,
625
+ CoordinationType.SPATIAL_LAYER_TRANSPARENT_COLOR,
626
+ CoordinationType.SPATIAL_LAYER_MODEL_MATRIX,
627
+ CoordinationType.SPATIAL_CHANNEL_COLOR,
628
+ CoordinationType.SPATIAL_SEGMENTATION_FILLED,
629
+ CoordinationType.SPATIAL_SEGMENTATION_STROKE_WIDTH,
630
+ CoordinationType.IMAGE_CHANNEL,
631
+ CoordinationType.SEGMENTATION_CHANNEL,
632
+ CoordinationType.SPATIAL_CHANNEL_VISIBLE,
633
+ CoordinationType.SPATIAL_CHANNEL_OPACITY,
634
+ CoordinationType.SPATIAL_CHANNEL_WINDOW,
635
+ CoordinationType.PHOTOMETRIC_INTERPRETATION,
636
+ CoordinationType.SPATIAL_RENDERING_MODE,
637
+ CoordinationType.VOLUMETRIC_RENDERING_ALGORITHM,
638
+ CoordinationType.SPATIAL_TARGET_RESOLUTION,
639
+ CoordinationType.SPATIAL_SLICE_X,
640
+ CoordinationType.SPATIAL_SLICE_Y,
641
+ CoordinationType.SPATIAL_SLICE_Z,
642
+ CoordinationType.SPOT_LAYER,
643
+ CoordinationType.POINT_LAYER,
644
+ CoordinationType.SPATIAL_SPOT_RADIUS,
645
+ CoordinationType.SPATIAL_SPOT_FILLED,
646
+ CoordinationType.SPATIAL_SPOT_STROKE_WIDTH,
647
+ CoordinationType.SPATIAL_LAYER_COLOR,
648
+ CoordinationType.OBS_COLOR_ENCODING,
649
+ CoordinationType.TOOLTIPS_VISIBLE,
650
+ CoordinationType.TOOLTIP_CROSSHAIRS_VISIBLE,
651
+ CoordinationType.LEGEND_VISIBLE,
652
+ CoordinationType.SPATIAL_CHANNEL_LABELS_VISIBLE,
653
+ CoordinationType.SPATIAL_CHANNEL_LABELS_ORIENTATION,
654
+ CoordinationType.SPATIAL_CHANNEL_LABEL_SIZE
655
+ ],
465
656
  [ViewType.GENOMIC_PROFILES]: [
466
657
  CoordinationType.DATASET,
467
658
  CoordinationType.OBS_TYPE,
@@ -495,10 +686,10 @@ const COMPONENT_COORDINATION_TYPES = {
495
686
  ]
496
687
  };
497
688
  const note = "This file is autogenerated by .changeset/post-changelog.mjs.";
498
- const version = "3.1.2";
499
- const date = "2023-08-31";
689
+ const version = "3.2.0";
690
+ const date = "2023-09-12";
500
691
  const branch = "changeset-release/main";
501
- const hash = "21819ea1";
692
+ const hash = "13836ae8";
502
693
  const version$1 = {
503
694
  note,
504
695
  version,
package/dist-tsc/constant-relationships.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"constant-relationships.d.ts","sourceRoot":"","sources":["../src/constant-relationships.js"],"names":[],"mappings":"AAEA;;;;GAIG;AACH;;EA2CE;AAEF;;;;GAIG;AACH;;EA6BE"}
1
+ {"version":3,"file":"constant-relationships.d.ts","sourceRoot":"","sources":["../src/constant-relationships.js"],"names":[],"mappings":"AAEA;;;;GAIG;AACH;;EAiDE;AAEF;;;;GAIG;AACH;;EAmCE"}
package/dist-tsc/constant-relationships.js CHANGED
@@ -7,6 +7,8 @@ import { FileType, DataType, CoordinationType } from './constants.js';
7
7
  export const FILE_TYPE_DATA_TYPE_MAPPING = {
8
8
  // For new file types
9
9
  [FileType.OBS_EMBEDDING_CSV]: DataType.OBS_EMBEDDING,
10
+ [FileType.OBS_SPOTS_CSV]: DataType.OBS_SPOTS,
11
+ [FileType.OBS_POINTS_CSV]: DataType.OBS_POINTS,
10
12
  [FileType.OBS_LOCATIONS_CSV]: DataType.OBS_LOCATIONS,
11
13
  [FileType.OBS_LABELS_CSV]: DataType.OBS_LABELS,
12
14
  [FileType.FEATURE_LABELS_CSV]: DataType.FEATURE_LABELS,
@@ -18,6 +20,8 @@ export const FILE_TYPE_DATA_TYPE_MAPPING = {
18
20
  [FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
19
21
  [FileType.OBS_SETS_ANNDATA_ZARR]: DataType.OBS_SETS,
20
22
  [FileType.OBS_EMBEDDING_ANNDATA_ZARR]: DataType.OBS_EMBEDDING,
23
+ [FileType.OBS_SPOTS_ANNDATA_ZARR]: DataType.OBS_SPOTS,
24
+ [FileType.OBS_POINTS_ANNDATA_ZARR]: DataType.OBS_POINTS,
21
25
  [FileType.OBS_LOCATIONS_ANNDATA_ZARR]: DataType.OBS_LOCATIONS,
22
26
  [FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
23
27
  [FileType.OBS_LABELS_ANNDATA_ZARR]: DataType.OBS_LABELS,
@@ -27,6 +31,8 @@ export const FILE_TYPE_DATA_TYPE_MAPPING = {
27
31
  [FileType.OBS_FEATURE_MATRIX_MUDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
28
32
  [FileType.OBS_SETS_MUDATA_ZARR]: DataType.OBS_SETS,
29
33
  [FileType.OBS_EMBEDDING_MUDATA_ZARR]: DataType.OBS_EMBEDDING,
34
+ [FileType.OBS_SPOTS_MUDATA_ZARR]: DataType.OBS_SPOTS,
35
+ [FileType.OBS_POINTS_MUDATA_ZARR]: DataType.OBS_POINTS,
30
36
  [FileType.OBS_LOCATIONS_MUDATA_ZARR]: DataType.OBS_LOCATIONS,
31
37
  [FileType.OBS_SEGMENTATIONS_MUDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
32
38
  [FileType.OBS_LABELS_MUDATA_ZARR]: DataType.OBS_LABELS,
@@ -61,6 +67,12 @@ export const DATA_TYPE_COORDINATION_VALUE_USAGE = {
61
67
  CoordinationType.OBS_TYPE,
62
68
  CoordinationType.EMBEDDING_TYPE,
63
69
  ],
70
+ [DataType.OBS_SPOTS]: [
71
+ CoordinationType.OBS_TYPE,
72
+ ],
73
+ [DataType.OBS_POINTS]: [
74
+ CoordinationType.OBS_TYPE,
75
+ ],
64
76
  [DataType.OBS_LOCATIONS]: [
65
77
  CoordinationType.OBS_TYPE,
66
78
  ],
package/dist-tsc/constants.d.ts CHANGED
@@ -3,8 +3,10 @@ export namespace ViewType {
3
3
  const STATUS: string;
4
4
  const SCATTERPLOT: string;
5
5
  const SPATIAL: string;
6
+ const SPATIAL_BETA: string;
6
7
  const HEATMAP: string;
7
8
  const LAYER_CONTROLLER: string;
9
+ const LAYER_CONTROLLER_BETA: string;
8
10
  const GENOMIC_PROFILES: string;
9
11
  const GATING: string;
10
12
  const FEATURE_LIST: string;
@@ -16,7 +18,6 @@ export namespace ViewType {
16
18
  export namespace DataType {
17
19
  export const OBS_LABELS: string;
18
20
  export const OBS_EMBEDDING: string;
19
- export const OBS_LOCATIONS: string;
20
21
  export const OBS_FEATURE_MATRIX: string;
21
22
  const OBS_SETS_1: string;
22
23
  export { OBS_SETS_1 as OBS_SETS };
@@ -26,10 +27,15 @@ export namespace DataType {
26
27
  export const NEIGHBORHOODS: string;
27
28
  const GENOMIC_PROFILES_1: string;
28
29
  export { GENOMIC_PROFILES_1 as GENOMIC_PROFILES };
30
+ export const OBS_SPOTS: string;
31
+ export const OBS_POINTS: string;
32
+ export const OBS_LOCATIONS: string;
29
33
  }
30
34
  export namespace FileType {
31
35
  const ANNDATA_ZARR: string;
32
36
  const OBS_EMBEDDING_CSV: string;
37
+ const OBS_SPOTS_CSV: string;
38
+ const OBS_POINTS_CSV: string;
33
39
  const OBS_LOCATIONS_CSV: string;
34
40
  const OBS_LABELS_CSV: string;
35
41
  const FEATURE_LABELS_CSV: string;
@@ -41,6 +47,8 @@ export namespace FileType {
41
47
  const OBS_FEATURE_MATRIX_ANNDATA_ZARR: string;
42
48
  const OBS_SETS_ANNDATA_ZARR: string;
43
49
  const OBS_EMBEDDING_ANNDATA_ZARR: string;
50
+ const OBS_SPOTS_ANNDATA_ZARR: string;
51
+ const OBS_POINTS_ANNDATA_ZARR: string;
44
52
  const OBS_LOCATIONS_ANNDATA_ZARR: string;
45
53
  const OBS_SEGMENTATIONS_ANNDATA_ZARR: string;
46
54
  const OBS_LABELS_ANNDATA_ZARR: string;
@@ -48,6 +56,8 @@ export namespace FileType {
48
56
  const OBS_FEATURE_MATRIX_MUDATA_ZARR: string;
49
57
  const OBS_SETS_MUDATA_ZARR: string;
50
58
  const OBS_EMBEDDING_MUDATA_ZARR: string;
59
+ const OBS_SPOTS_MUDATA_ZARR: string;
60
+ const OBS_POINTS_MUDATA_ZARR: string;
51
61
  const OBS_LOCATIONS_MUDATA_ZARR: string;
52
62
  const OBS_SEGMENTATIONS_MUDATA_ZARR: string;
53
63
  const OBS_LABELS_MUDATA_ZARR: string;
@@ -106,6 +116,7 @@ export namespace CoordinationType {
106
116
  const SPATIAL_TARGET_X: string;
107
117
  const SPATIAL_TARGET_Y: string;
108
118
  const SPATIAL_TARGET_Z: string;
119
+ const SPATIAL_TARGET_T: string;
109
120
  const SPATIAL_ROTATION_X: string;
110
121
  const SPATIAL_ROTATION_Y: string;
111
122
  const SPATIAL_ROTATION_Z: string;
@@ -143,6 +154,42 @@ export namespace CoordinationType {
143
154
  const GATING_FEATURE_SELECTION_Y: string;
144
155
  const FEATURE_VALUE_TRANSFORM_COEFFICIENT: string;
145
156
  const TOOLTIPS_VISIBLE: string;
157
+ const FILE_UID: string;
158
+ const IMAGE_LAYER: string;
159
+ const IMAGE_CHANNEL: string;
160
+ const SEGMENTATION_LAYER: string;
161
+ const SEGMENTATION_CHANNEL: string;
162
+ const SPATIAL_TARGET_C: string;
163
+ const SPATIAL_LAYER_VISIBLE: string;
164
+ const SPATIAL_LAYER_OPACITY: string;
165
+ const SPATIAL_LAYER_COLORMAP: string;
166
+ const SPATIAL_LAYER_TRANSPARENT_COLOR: string;
167
+ const SPATIAL_LAYER_MODEL_MATRIX: string;
168
+ const SPATIAL_SEGMENTATION_FILLED: string;
169
+ const SPATIAL_SEGMENTATION_STROKE_WIDTH: string;
170
+ const SPATIAL_CHANNEL_COLOR: string;
171
+ const SPATIAL_CHANNEL_VISIBLE: string;
172
+ const SPATIAL_CHANNEL_OPACITY: string;
173
+ const SPATIAL_CHANNEL_WINDOW: string;
174
+ const PHOTOMETRIC_INTERPRETATION: string;
175
+ const SPATIAL_RENDERING_MODE: string;
176
+ const VOLUMETRIC_RENDERING_ALGORITHM: string;
177
+ const SPATIAL_TARGET_RESOLUTION: string;
178
+ const SPATIAL_SLICE_X: string;
179
+ const SPATIAL_SLICE_Y: string;
180
+ const SPATIAL_SLICE_Z: string;
181
+ const SPOT_LAYER: string;
182
+ const POINT_LAYER: string;
183
+ const SPATIAL_SPOT_RADIUS: string;
184
+ const SPATIAL_SPOT_FILLED: string;
185
+ const SPATIAL_SPOT_STROKE_WIDTH: string;
186
+ const SPATIAL_LAYER_COLOR: string;
187
+ const PIXEL_HIGHLIGHT: string;
188
+ const TOOLTIP_CROSSHAIRS_VISIBLE: string;
189
+ const LEGEND_VISIBLE: string;
190
+ const SPATIAL_CHANNEL_LABELS_VISIBLE: string;
191
+ const SPATIAL_CHANNEL_LABELS_ORIENTATION: string;
192
+ const SPATIAL_CHANNEL_LABEL_SIZE: string;
146
193
  }
147
194
  export namespace STATUS {
148
195
  const LOADING: string;
package/dist-tsc/constants.js CHANGED
@@ -8,8 +8,10 @@ export const ViewType = {
8
8
  STATUS: 'status',
9
9
  SCATTERPLOT: 'scatterplot',
10
10
  SPATIAL: 'spatial',
11
+ SPATIAL_BETA: 'spatialBeta',
11
12
  HEATMAP: 'heatmap',
12
13
  LAYER_CONTROLLER: 'layerController',
14
+ LAYER_CONTROLLER_BETA: 'layerControllerBeta',
13
15
  GENOMIC_PROFILES: 'genomicProfiles',
14
16
  GATING: 'gating',
15
17
  FEATURE_LIST: 'featureList',
@@ -21,7 +23,6 @@ export const ViewType = {
21
23
  export const DataType = {
22
24
  OBS_LABELS: 'obsLabels',
23
25
  OBS_EMBEDDING: 'obsEmbedding',
24
- OBS_LOCATIONS: 'obsLocations',
25
26
  OBS_FEATURE_MATRIX: 'obsFeatureMatrix',
26
27
  OBS_SETS: 'obsSets',
27
28
  FEATURE_LABELS: 'featureLabels',
@@ -29,12 +30,17 @@ export const DataType = {
29
30
  OBS_SEGMENTATIONS: 'obsSegmentations',
30
31
  NEIGHBORHOODS: 'neighborhoods',
31
32
  GENOMIC_PROFILES: 'genomic-profiles',
33
+ OBS_SPOTS: 'obsSpots',
34
+ OBS_POINTS: 'obsPoints',
35
+ OBS_LOCATIONS: 'obsLocations',
32
36
  };
33
37
  export const FileType = {
34
38
  // Joint file types
35
39
  ANNDATA_ZARR: 'anndata.zarr',
36
40
  // Atomic file types
37
41
  OBS_EMBEDDING_CSV: 'obsEmbedding.csv',
42
+ OBS_SPOTS_CSV: 'obsSpots.csv',
43
+ OBS_POINTS_CSV: 'obsPoints.csv',
38
44
  OBS_LOCATIONS_CSV: 'obsLocations.csv',
39
45
  OBS_LABELS_CSV: 'obsLabels.csv',
40
46
  FEATURE_LABELS_CSV: 'featureLabels.csv',
@@ -47,6 +53,8 @@ export const FileType = {
47
53
  OBS_FEATURE_MATRIX_ANNDATA_ZARR: 'obsFeatureMatrix.anndata.zarr',
48
54
  OBS_SETS_ANNDATA_ZARR: 'obsSets.anndata.zarr',
49
55
  OBS_EMBEDDING_ANNDATA_ZARR: 'obsEmbedding.anndata.zarr',
56
+ OBS_SPOTS_ANNDATA_ZARR: 'obsSpots.anndata.zarr',
57
+ OBS_POINTS_ANNDATA_ZARR: 'obsPoints.anndata.zarr',
50
58
  OBS_LOCATIONS_ANNDATA_ZARR: 'obsLocations.anndata.zarr',
51
59
  OBS_SEGMENTATIONS_ANNDATA_ZARR: 'obsSegmentations.anndata.zarr',
52
60
  OBS_LABELS_ANNDATA_ZARR: 'obsLabels.anndata.zarr',
@@ -55,6 +63,8 @@ export const FileType = {
55
63
  OBS_FEATURE_MATRIX_MUDATA_ZARR: 'obsFeatureMatrix.mudata.zarr',
56
64
  OBS_SETS_MUDATA_ZARR: 'obsSets.mudata.zarr',
57
65
  OBS_EMBEDDING_MUDATA_ZARR: 'obsEmbedding.mudata.zarr',
66
+ OBS_SPOTS_MUDATA_ZARR: 'obsSpots.mudata.zarr',
67
+ OBS_POINTS_MUDATA_ZARR: 'obsPoints.mudata.zarr',
58
68
  OBS_LOCATIONS_MUDATA_ZARR: 'obsLocations.mudata.zarr',
59
69
  OBS_SEGMENTATIONS_MUDATA_ZARR: 'obsSegmentations.mudata.zarr',
60
70
  OBS_LABELS_MUDATA_ZARR: 'obsLabels.mudata.zarr',
@@ -102,10 +112,8 @@ export const FileType = {
102
112
  * to help prevent typos.
103
113
  */
104
114
  export const CoordinationType = {
105
- // Meta coordination scopes
106
115
  META_COORDINATION_SCOPES: 'metaCoordinationScopes',
107
116
  META_COORDINATION_SCOPES_BY: 'metaCoordinationScopesBy',
108
- // Other coordination scopes
109
117
  DATASET: 'dataset',
110
118
  // Entity types
111
119
  OBS_TYPE: 'obsType',
@@ -131,6 +139,7 @@ export const CoordinationType = {
131
139
  SPATIAL_TARGET_X: 'spatialTargetX',
132
140
  SPATIAL_TARGET_Y: 'spatialTargetY',
133
141
  SPATIAL_TARGET_Z: 'spatialTargetZ',
142
+ SPATIAL_TARGET_T: 'spatialTargetT',
134
143
  SPATIAL_ROTATION_X: 'spatialRotationX',
135
144
  SPATIAL_ROTATION_Y: 'spatialRotationY',
136
145
  SPATIAL_ROTATION_Z: 'spatialRotationZ',
@@ -169,6 +178,45 @@ export const CoordinationType = {
169
178
  GATING_FEATURE_SELECTION_Y: 'gatingFeatureSelectionY',
170
179
  FEATURE_VALUE_TRANSFORM_COEFFICIENT: 'featureValueTransformCoefficient',
171
180
  TOOLTIPS_VISIBLE: 'tooltipsVisible',
181
+ FILE_UID: 'fileUid',
182
+ IMAGE_LAYER: 'imageLayer',
183
+ IMAGE_CHANNEL: 'imageChannel',
184
+ SEGMENTATION_LAYER: 'segmentationLayer',
185
+ SEGMENTATION_CHANNEL: 'segmentationChannel',
186
+ SPATIAL_TARGET_C: 'spatialTargetC',
187
+ SPATIAL_LAYER_VISIBLE: 'spatialLayerVisible',
188
+ SPATIAL_LAYER_OPACITY: 'spatialLayerOpacity',
189
+ SPATIAL_LAYER_COLORMAP: 'spatialLayerColormap',
190
+ SPATIAL_LAYER_TRANSPARENT_COLOR: 'spatialLayerTransparentColor',
191
+ SPATIAL_LAYER_MODEL_MATRIX: 'spatialLayerModelMatrix',
192
+ SPATIAL_SEGMENTATION_FILLED: 'spatialSegmentationFilled',
193
+ SPATIAL_SEGMENTATION_STROKE_WIDTH: 'spatialSegmentationStrokeWidth',
194
+ SPATIAL_CHANNEL_COLOR: 'spatialChannelColor',
195
+ SPATIAL_CHANNEL_VISIBLE: 'spatialChannelVisible',
196
+ SPATIAL_CHANNEL_OPACITY: 'spatialChannelOpacity',
197
+ SPATIAL_CHANNEL_WINDOW: 'spatialChannelWindow',
198
+ PHOTOMETRIC_INTERPRETATION: 'photometricInterpretation',
199
+ // For 3D volume rendering
200
+ SPATIAL_RENDERING_MODE: 'spatialRenderingMode',
201
+ VOLUMETRIC_RENDERING_ALGORITHM: 'volumetricRenderingAlgorithm',
202
+ SPATIAL_TARGET_RESOLUTION: 'spatialTargetResolution',
203
+ // For clipping plane sliders
204
+ SPATIAL_SLICE_X: 'spatialSliceX',
205
+ SPATIAL_SLICE_Y: 'spatialSliceY',
206
+ SPATIAL_SLICE_Z: 'spatialSliceZ',
207
+ // For spatial spot and point layers
208
+ SPOT_LAYER: 'spotLayer',
209
+ POINT_LAYER: 'pointLayer',
210
+ SPATIAL_SPOT_RADIUS: 'spatialSpotRadius',
211
+ SPATIAL_SPOT_FILLED: 'spatialSpotFilled',
212
+ SPATIAL_SPOT_STROKE_WIDTH: 'spatialSpotStrokeWidth',
213
+ SPATIAL_LAYER_COLOR: 'spatialLayerColor',
214
+ PIXEL_HIGHLIGHT: 'pixelHighlight',
215
+ TOOLTIP_CROSSHAIRS_VISIBLE: 'tooltipCrosshairsVisible',
216
+ LEGEND_VISIBLE: 'legendVisible',
217
+ SPATIAL_CHANNEL_LABELS_VISIBLE: 'spatialChannelLabelsVisible',
218
+ SPATIAL_CHANNEL_LABELS_ORIENTATION: 'spatialChannelLabelsOrientation',
219
+ SPATIAL_CHANNEL_LABEL_SIZE: 'spatialChannelLabelSize',
172
220
  };
173
221
  export const STATUS = {
174
222
  LOADING: 'loading',
package/dist-tsc/coordination.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"coordination.d.ts","sourceRoot":"","sources":["../src/coordination.js"],"names":[],"mappings":"AASA,2DAcE;AAEF;;;;;;;KAOK;AACL;;;EA8OE"}
1
+ {"version":3,"file":"coordination.d.ts","sourceRoot":"","sources":["../src/coordination.js"],"names":[],"mappings":"AASA,2DAcE;AAEF;;;;;;;KAOK;AACL;;;EA4WE"}
package/dist-tsc/coordination.js CHANGED
@@ -131,6 +131,77 @@ export const COMPONENT_COORDINATION_TYPES = {
131
131
  CoordinationType.MOLECULE_HIGHLIGHT,
132
132
  CoordinationType.TOOLTIPS_VISIBLE,
133
133
  ],
134
+ [ViewType.SPATIAL_BETA]: [
135
+ CoordinationType.META_COORDINATION_SCOPES,
136
+ CoordinationType.META_COORDINATION_SCOPES_BY,
137
+ CoordinationType.DATASET,
138
+ CoordinationType.OBS_TYPE,
139
+ CoordinationType.OBS_LABELS_TYPE,
140
+ CoordinationType.FEATURE_TYPE,
141
+ CoordinationType.FEATURE_VALUE_TYPE,
142
+ CoordinationType.SPATIAL_ZOOM,
143
+ CoordinationType.SPATIAL_ROTATION,
144
+ CoordinationType.SPATIAL_POINT_LAYER,
145
+ CoordinationType.SPATIAL_NEIGHBORHOOD_LAYER,
146
+ CoordinationType.SPATIAL_TARGET_X,
147
+ CoordinationType.SPATIAL_TARGET_Y,
148
+ CoordinationType.SPATIAL_TARGET_Z,
149
+ CoordinationType.SPATIAL_TARGET_T,
150
+ CoordinationType.SPATIAL_ROTATION_X,
151
+ CoordinationType.SPATIAL_ROTATION_Y,
152
+ CoordinationType.SPATIAL_ROTATION_Z,
153
+ CoordinationType.SPATIAL_ROTATION_ORBIT,
154
+ CoordinationType.SPATIAL_ORBIT_AXIS,
155
+ CoordinationType.SPATIAL_AXIS_FIXED,
156
+ CoordinationType.OBS_FILTER,
157
+ CoordinationType.OBS_HIGHLIGHT,
158
+ CoordinationType.OBS_SET_SELECTION,
159
+ CoordinationType.OBS_SET_HIGHLIGHT,
160
+ CoordinationType.OBS_SET_COLOR,
161
+ CoordinationType.FEATURE_HIGHLIGHT,
162
+ CoordinationType.FEATURE_SELECTION,
163
+ CoordinationType.FEATURE_VALUE_COLORMAP,
164
+ CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
165
+ CoordinationType.OBS_COLOR_ENCODING,
166
+ CoordinationType.ADDITIONAL_OBS_SETS,
167
+ CoordinationType.MOLECULE_HIGHLIGHT,
168
+ CoordinationType.TOOLTIPS_VISIBLE,
169
+ CoordinationType.FILE_UID,
170
+ CoordinationType.SPATIAL_TARGET_C,
171
+ CoordinationType.SPATIAL_LAYER_VISIBLE,
172
+ CoordinationType.SPATIAL_LAYER_OPACITY,
173
+ CoordinationType.SPATIAL_LAYER_COLORMAP,
174
+ CoordinationType.SPATIAL_LAYER_TRANSPARENT_COLOR,
175
+ CoordinationType.SPATIAL_LAYER_MODEL_MATRIX,
176
+ CoordinationType.SPATIAL_CHANNEL_COLOR,
177
+ CoordinationType.SPATIAL_SEGMENTATION_FILLED,
178
+ CoordinationType.SPATIAL_SEGMENTATION_STROKE_WIDTH,
179
+ CoordinationType.IMAGE_LAYER,
180
+ CoordinationType.SEGMENTATION_LAYER,
181
+ CoordinationType.IMAGE_CHANNEL,
182
+ CoordinationType.SEGMENTATION_CHANNEL,
183
+ CoordinationType.SPATIAL_CHANNEL_VISIBLE,
184
+ CoordinationType.SPATIAL_CHANNEL_OPACITY,
185
+ CoordinationType.SPATIAL_CHANNEL_WINDOW,
186
+ CoordinationType.SPATIAL_RENDERING_MODE,
187
+ CoordinationType.VOLUMETRIC_RENDERING_ALGORITHM,
188
+ CoordinationType.SPATIAL_TARGET_RESOLUTION,
189
+ CoordinationType.SPATIAL_SLICE_X,
190
+ CoordinationType.SPATIAL_SLICE_Y,
191
+ CoordinationType.SPATIAL_SLICE_Z,
192
+ CoordinationType.SPOT_LAYER,
193
+ CoordinationType.POINT_LAYER,
194
+ CoordinationType.SPATIAL_SPOT_RADIUS,
195
+ CoordinationType.SPATIAL_SPOT_FILLED,
196
+ CoordinationType.SPATIAL_SPOT_STROKE_WIDTH,
197
+ CoordinationType.SPATIAL_LAYER_COLOR,
198
+ CoordinationType.PIXEL_HIGHLIGHT,
199
+ CoordinationType.TOOLTIP_CROSSHAIRS_VISIBLE,
200
+ CoordinationType.LEGEND_VISIBLE,
201
+ CoordinationType.SPATIAL_CHANNEL_LABELS_VISIBLE,
202
+ CoordinationType.SPATIAL_CHANNEL_LABELS_ORIENTATION,
203
+ CoordinationType.SPATIAL_CHANNEL_LABEL_SIZE,
204
+ ],
134
205
  [ViewType.HEATMAP]: [
135
206
  CoordinationType.DATASET,
136
207
  CoordinationType.OBS_TYPE,
@@ -236,6 +307,61 @@ export const COMPONENT_COORDINATION_TYPES = {
236
307
  CoordinationType.SPATIAL_ROTATION_ORBIT,
237
308
  CoordinationType.SPATIAL_ORBIT_AXIS,
238
309
  ],
310
+ [ViewType.LAYER_CONTROLLER_BETA]: [
311
+ CoordinationType.META_COORDINATION_SCOPES,
312
+ CoordinationType.META_COORDINATION_SCOPES_BY,
313
+ CoordinationType.DATASET,
314
+ CoordinationType.OBS_TYPE,
315
+ CoordinationType.FEATURE_TYPE,
316
+ CoordinationType.FEATURE_VALUE_TYPE,
317
+ CoordinationType.SPATIAL_POINT_LAYER,
318
+ CoordinationType.SPATIAL_NEIGHBORHOOD_LAYER,
319
+ CoordinationType.SPATIAL_ZOOM,
320
+ CoordinationType.SPATIAL_TARGET_X,
321
+ CoordinationType.SPATIAL_TARGET_Y,
322
+ CoordinationType.SPATIAL_TARGET_Z,
323
+ CoordinationType.SPATIAL_TARGET_T,
324
+ CoordinationType.SPATIAL_ROTATION_X,
325
+ CoordinationType.SPATIAL_ROTATION_Y,
326
+ CoordinationType.SPATIAL_ROTATION_Z,
327
+ CoordinationType.SPATIAL_ROTATION_ORBIT,
328
+ CoordinationType.SPATIAL_ORBIT_AXIS,
329
+ CoordinationType.FILE_UID,
330
+ CoordinationType.SPATIAL_TARGET_C,
331
+ CoordinationType.SPATIAL_LAYER_VISIBLE,
332
+ CoordinationType.SPATIAL_LAYER_OPACITY,
333
+ CoordinationType.SPATIAL_LAYER_COLORMAP,
334
+ CoordinationType.SPATIAL_LAYER_TRANSPARENT_COLOR,
335
+ CoordinationType.SPATIAL_LAYER_MODEL_MATRIX,
336
+ CoordinationType.SPATIAL_CHANNEL_COLOR,
337
+ CoordinationType.SPATIAL_SEGMENTATION_FILLED,
338
+ CoordinationType.SPATIAL_SEGMENTATION_STROKE_WIDTH,
339
+ CoordinationType.IMAGE_CHANNEL,
340
+ CoordinationType.SEGMENTATION_CHANNEL,
341
+ CoordinationType.SPATIAL_CHANNEL_VISIBLE,
342
+ CoordinationType.SPATIAL_CHANNEL_OPACITY,
343
+ CoordinationType.SPATIAL_CHANNEL_WINDOW,
344
+ CoordinationType.PHOTOMETRIC_INTERPRETATION,
345
+ CoordinationType.SPATIAL_RENDERING_MODE,
346
+ CoordinationType.VOLUMETRIC_RENDERING_ALGORITHM,
347
+ CoordinationType.SPATIAL_TARGET_RESOLUTION,
348
+ CoordinationType.SPATIAL_SLICE_X,
349
+ CoordinationType.SPATIAL_SLICE_Y,
350
+ CoordinationType.SPATIAL_SLICE_Z,
351
+ CoordinationType.SPOT_LAYER,
352
+ CoordinationType.POINT_LAYER,
353
+ CoordinationType.SPATIAL_SPOT_RADIUS,
354
+ CoordinationType.SPATIAL_SPOT_FILLED,
355
+ CoordinationType.SPATIAL_SPOT_STROKE_WIDTH,
356
+ CoordinationType.SPATIAL_LAYER_COLOR,
357
+ CoordinationType.OBS_COLOR_ENCODING,
358
+ CoordinationType.TOOLTIPS_VISIBLE,
359
+ CoordinationType.TOOLTIP_CROSSHAIRS_VISIBLE,
360
+ CoordinationType.LEGEND_VISIBLE,
361
+ CoordinationType.SPATIAL_CHANNEL_LABELS_VISIBLE,
362
+ CoordinationType.SPATIAL_CHANNEL_LABELS_ORIENTATION,
363
+ CoordinationType.SPATIAL_CHANNEL_LABEL_SIZE,
364
+ ],
239
365
  [ViewType.GENOMIC_PROFILES]: [
240
366
  CoordinationType.DATASET,
241
367
  CoordinationType.OBS_TYPE,
package/dist-tsc/version.json CHANGED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "note": "This file is autogenerated by .changeset/post-changelog.mjs.",
3
- "version": "3.1.2",
4
- "date": "2023-08-31",
3
+ "version": "3.2.0",
4
+ "date": "2023-09-12",
5
5
  "branch": "changeset-release/main",
6
- "hash": "21819ea1"
6
+ "hash": "13836ae8"
7
7
  }
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@vitessce/constants-internal",
3
- "version": "3.1.2",
3
+ "version": "3.2.0",
4
4
  "author": "Gehlenborg Lab",
5
5
  "homepage": "http://vitessce.io",
6
6
  "repository": {
package/src/constant-relationships.js CHANGED
@@ -8,6 +8,8 @@ import { FileType, DataType, CoordinationType } from './constants.js';
8
8
  export const FILE_TYPE_DATA_TYPE_MAPPING = {
9
9
  // For new file types
10
10
  [FileType.OBS_EMBEDDING_CSV]: DataType.OBS_EMBEDDING,
11
+ [FileType.OBS_SPOTS_CSV]: DataType.OBS_SPOTS,
12
+ [FileType.OBS_POINTS_CSV]: DataType.OBS_POINTS,
11
13
  [FileType.OBS_LOCATIONS_CSV]: DataType.OBS_LOCATIONS,
12
14
  [FileType.OBS_LABELS_CSV]: DataType.OBS_LABELS,
13
15
  [FileType.FEATURE_LABELS_CSV]: DataType.FEATURE_LABELS,
@@ -19,6 +21,8 @@ export const FILE_TYPE_DATA_TYPE_MAPPING = {
19
21
  [FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
20
22
  [FileType.OBS_SETS_ANNDATA_ZARR]: DataType.OBS_SETS,
21
23
  [FileType.OBS_EMBEDDING_ANNDATA_ZARR]: DataType.OBS_EMBEDDING,
24
+ [FileType.OBS_SPOTS_ANNDATA_ZARR]: DataType.OBS_SPOTS,
25
+ [FileType.OBS_POINTS_ANNDATA_ZARR]: DataType.OBS_POINTS,
22
26
  [FileType.OBS_LOCATIONS_ANNDATA_ZARR]: DataType.OBS_LOCATIONS,
23
27
  [FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
24
28
  [FileType.OBS_LABELS_ANNDATA_ZARR]: DataType.OBS_LABELS,
@@ -28,6 +32,8 @@ export const FILE_TYPE_DATA_TYPE_MAPPING = {
28
32
  [FileType.OBS_FEATURE_MATRIX_MUDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
29
33
  [FileType.OBS_SETS_MUDATA_ZARR]: DataType.OBS_SETS,
30
34
  [FileType.OBS_EMBEDDING_MUDATA_ZARR]: DataType.OBS_EMBEDDING,
35
+ [FileType.OBS_SPOTS_MUDATA_ZARR]: DataType.OBS_SPOTS,
36
+ [FileType.OBS_POINTS_MUDATA_ZARR]: DataType.OBS_POINTS,
31
37
  [FileType.OBS_LOCATIONS_MUDATA_ZARR]: DataType.OBS_LOCATIONS,
32
38
  [FileType.OBS_SEGMENTATIONS_MUDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
33
39
  [FileType.OBS_LABELS_MUDATA_ZARR]: DataType.OBS_LABELS,
@@ -63,6 +69,12 @@ export const DATA_TYPE_COORDINATION_VALUE_USAGE = {
63
69
  CoordinationType.OBS_TYPE,
64
70
  CoordinationType.EMBEDDING_TYPE,
65
71
  ],
72
+ [DataType.OBS_SPOTS]: [
73
+ CoordinationType.OBS_TYPE,
74
+ ],
75
+ [DataType.OBS_POINTS]: [
76
+ CoordinationType.OBS_TYPE,
77
+ ],
66
78
  [DataType.OBS_LOCATIONS]: [
67
79
  CoordinationType.OBS_TYPE,
68
80
  ],
package/src/constants.js CHANGED
@@ -8,8 +8,10 @@ export const ViewType = {
8
8
  STATUS: 'status',
9
9
  SCATTERPLOT: 'scatterplot',
10
10
  SPATIAL: 'spatial',
11
+ SPATIAL_BETA: 'spatialBeta',
11
12
  HEATMAP: 'heatmap',
12
13
  LAYER_CONTROLLER: 'layerController',
14
+ LAYER_CONTROLLER_BETA: 'layerControllerBeta',
13
15
  GENOMIC_PROFILES: 'genomicProfiles',
14
16
  GATING: 'gating',
15
17
  FEATURE_LIST: 'featureList',
@@ -22,7 +24,6 @@ export const ViewType = {
22
24
  export const DataType = {
23
25
  OBS_LABELS: 'obsLabels',
24
26
  OBS_EMBEDDING: 'obsEmbedding',
25
- OBS_LOCATIONS: 'obsLocations',
26
27
  OBS_FEATURE_MATRIX: 'obsFeatureMatrix',
27
28
  OBS_SETS: 'obsSets',
28
29
  FEATURE_LABELS: 'featureLabels',
@@ -30,6 +31,9 @@ export const DataType = {
30
31
  OBS_SEGMENTATIONS: 'obsSegmentations',
31
32
  NEIGHBORHOODS: 'neighborhoods',
32
33
  GENOMIC_PROFILES: 'genomic-profiles',
34
+ OBS_SPOTS: 'obsSpots',
35
+ OBS_POINTS: 'obsPoints',
36
+ OBS_LOCATIONS: 'obsLocations',
33
37
  };
34
38
 
35
39
 
@@ -38,6 +42,8 @@ export const FileType = {
38
42
  ANNDATA_ZARR: 'anndata.zarr',
39
43
  // Atomic file types
40
44
  OBS_EMBEDDING_CSV: 'obsEmbedding.csv',
45
+ OBS_SPOTS_CSV: 'obsSpots.csv',
46
+ OBS_POINTS_CSV: 'obsPoints.csv',
41
47
  OBS_LOCATIONS_CSV: 'obsLocations.csv',
42
48
  OBS_LABELS_CSV: 'obsLabels.csv',
43
49
  FEATURE_LABELS_CSV: 'featureLabels.csv',
@@ -50,6 +56,8 @@ export const FileType = {
50
56
  OBS_FEATURE_MATRIX_ANNDATA_ZARR: 'obsFeatureMatrix.anndata.zarr',
51
57
  OBS_SETS_ANNDATA_ZARR: 'obsSets.anndata.zarr',
52
58
  OBS_EMBEDDING_ANNDATA_ZARR: 'obsEmbedding.anndata.zarr',
59
+ OBS_SPOTS_ANNDATA_ZARR: 'obsSpots.anndata.zarr',
60
+ OBS_POINTS_ANNDATA_ZARR: 'obsPoints.anndata.zarr',
53
61
  OBS_LOCATIONS_ANNDATA_ZARR: 'obsLocations.anndata.zarr',
54
62
  OBS_SEGMENTATIONS_ANNDATA_ZARR: 'obsSegmentations.anndata.zarr',
55
63
  OBS_LABELS_ANNDATA_ZARR: 'obsLabels.anndata.zarr',
@@ -58,6 +66,8 @@ export const FileType = {
58
66
  OBS_FEATURE_MATRIX_MUDATA_ZARR: 'obsFeatureMatrix.mudata.zarr',
59
67
  OBS_SETS_MUDATA_ZARR: 'obsSets.mudata.zarr',
60
68
  OBS_EMBEDDING_MUDATA_ZARR: 'obsEmbedding.mudata.zarr',
69
+ OBS_SPOTS_MUDATA_ZARR: 'obsSpots.mudata.zarr',
70
+ OBS_POINTS_MUDATA_ZARR: 'obsPoints.mudata.zarr',
61
71
  OBS_LOCATIONS_MUDATA_ZARR: 'obsLocations.mudata.zarr',
62
72
  OBS_SEGMENTATIONS_MUDATA_ZARR: 'obsSegmentations.mudata.zarr',
63
73
  OBS_LABELS_MUDATA_ZARR: 'obsLabels.mudata.zarr',
@@ -106,10 +116,8 @@ export const FileType = {
106
116
  * to help prevent typos.
107
117
  */
108
118
  export const CoordinationType = {
109
- // Meta coordination scopes
110
119
  META_COORDINATION_SCOPES: 'metaCoordinationScopes',
111
120
  META_COORDINATION_SCOPES_BY: 'metaCoordinationScopesBy',
112
- // Other coordination scopes
113
121
  DATASET: 'dataset',
114
122
  // Entity types
115
123
  OBS_TYPE: 'obsType',
@@ -135,6 +143,7 @@ export const CoordinationType = {
135
143
  SPATIAL_TARGET_X: 'spatialTargetX',
136
144
  SPATIAL_TARGET_Y: 'spatialTargetY',
137
145
  SPATIAL_TARGET_Z: 'spatialTargetZ',
146
+ SPATIAL_TARGET_T: 'spatialTargetT',
138
147
  SPATIAL_ROTATION_X: 'spatialRotationX',
139
148
  SPATIAL_ROTATION_Y: 'spatialRotationY',
140
149
  SPATIAL_ROTATION_Z: 'spatialRotationZ',
@@ -173,6 +182,45 @@ export const CoordinationType = {
173
182
  GATING_FEATURE_SELECTION_Y: 'gatingFeatureSelectionY',
174
183
  FEATURE_VALUE_TRANSFORM_COEFFICIENT: 'featureValueTransformCoefficient',
175
184
  TOOLTIPS_VISIBLE: 'tooltipsVisible',
185
+ FILE_UID: 'fileUid',
186
+ IMAGE_LAYER: 'imageLayer',
187
+ IMAGE_CHANNEL: 'imageChannel',
188
+ SEGMENTATION_LAYER: 'segmentationLayer',
189
+ SEGMENTATION_CHANNEL: 'segmentationChannel',
190
+ SPATIAL_TARGET_C: 'spatialTargetC',
191
+ SPATIAL_LAYER_VISIBLE: 'spatialLayerVisible',
192
+ SPATIAL_LAYER_OPACITY: 'spatialLayerOpacity',
193
+ SPATIAL_LAYER_COLORMAP: 'spatialLayerColormap',
194
+ SPATIAL_LAYER_TRANSPARENT_COLOR: 'spatialLayerTransparentColor',
195
+ SPATIAL_LAYER_MODEL_MATRIX: 'spatialLayerModelMatrix',
196
+ SPATIAL_SEGMENTATION_FILLED: 'spatialSegmentationFilled',
197
+ SPATIAL_SEGMENTATION_STROKE_WIDTH: 'spatialSegmentationStrokeWidth',
198
+ SPATIAL_CHANNEL_COLOR: 'spatialChannelColor',
199
+ SPATIAL_CHANNEL_VISIBLE: 'spatialChannelVisible',
200
+ SPATIAL_CHANNEL_OPACITY: 'spatialChannelOpacity',
201
+ SPATIAL_CHANNEL_WINDOW: 'spatialChannelWindow',
202
+ PHOTOMETRIC_INTERPRETATION: 'photometricInterpretation',
203
+ // For 3D volume rendering
204
+ SPATIAL_RENDERING_MODE: 'spatialRenderingMode', // For whole spatial view
205
+ VOLUMETRIC_RENDERING_ALGORITHM: 'volumetricRenderingAlgorithm', // Could be per-image-layer
206
+ SPATIAL_TARGET_RESOLUTION: 'spatialTargetResolution', // Per-spatial-layer
207
+ // For clipping plane sliders
208
+ SPATIAL_SLICE_X: 'spatialSliceX',
209
+ SPATIAL_SLICE_Y: 'spatialSliceY',
210
+ SPATIAL_SLICE_Z: 'spatialSliceZ',
211
+ // For spatial spot and point layers
212
+ SPOT_LAYER: 'spotLayer',
213
+ POINT_LAYER: 'pointLayer',
214
+ SPATIAL_SPOT_RADIUS: 'spatialSpotRadius', // In micrometers?
215
+ SPATIAL_SPOT_FILLED: 'spatialSpotFilled',
216
+ SPATIAL_SPOT_STROKE_WIDTH: 'spatialSpotStrokeWidth',
217
+ SPATIAL_LAYER_COLOR: 'spatialLayerColor',
218
+ PIXEL_HIGHLIGHT: 'pixelHighlight', // Per-image-layer
219
+ TOOLTIP_CROSSHAIRS_VISIBLE: 'tooltipCrosshairsVisible',
220
+ LEGEND_VISIBLE: 'legendVisible',
221
+ SPATIAL_CHANNEL_LABELS_VISIBLE: 'spatialChannelLabelsVisible',
222
+ SPATIAL_CHANNEL_LABELS_ORIENTATION: 'spatialChannelLabelsOrientation',
223
+ SPATIAL_CHANNEL_LABEL_SIZE: 'spatialChannelLabelSize',
176
224
  };
177
225
 
178
226
  export const STATUS = {
package/src/coordination.js CHANGED
@@ -133,6 +133,77 @@ export const COMPONENT_COORDINATION_TYPES = {
133
133
  CoordinationType.MOLECULE_HIGHLIGHT,
134
134
  CoordinationType.TOOLTIPS_VISIBLE,
135
135
  ],
136
+ [ViewType.SPATIAL_BETA]: [
137
+ CoordinationType.META_COORDINATION_SCOPES,
138
+ CoordinationType.META_COORDINATION_SCOPES_BY,
139
+ CoordinationType.DATASET,
140
+ CoordinationType.OBS_TYPE,
141
+ CoordinationType.OBS_LABELS_TYPE,
142
+ CoordinationType.FEATURE_TYPE,
143
+ CoordinationType.FEATURE_VALUE_TYPE,
144
+ CoordinationType.SPATIAL_ZOOM,
145
+ CoordinationType.SPATIAL_ROTATION,
146
+ CoordinationType.SPATIAL_POINT_LAYER,
147
+ CoordinationType.SPATIAL_NEIGHBORHOOD_LAYER,
148
+ CoordinationType.SPATIAL_TARGET_X,
149
+ CoordinationType.SPATIAL_TARGET_Y,
150
+ CoordinationType.SPATIAL_TARGET_Z,
151
+ CoordinationType.SPATIAL_TARGET_T,
152
+ CoordinationType.SPATIAL_ROTATION_X,
153
+ CoordinationType.SPATIAL_ROTATION_Y,
154
+ CoordinationType.SPATIAL_ROTATION_Z,
155
+ CoordinationType.SPATIAL_ROTATION_ORBIT,
156
+ CoordinationType.SPATIAL_ORBIT_AXIS,
157
+ CoordinationType.SPATIAL_AXIS_FIXED,
158
+ CoordinationType.OBS_FILTER,
159
+ CoordinationType.OBS_HIGHLIGHT,
160
+ CoordinationType.OBS_SET_SELECTION,
161
+ CoordinationType.OBS_SET_HIGHLIGHT,
162
+ CoordinationType.OBS_SET_COLOR,
163
+ CoordinationType.FEATURE_HIGHLIGHT,
164
+ CoordinationType.FEATURE_SELECTION,
165
+ CoordinationType.FEATURE_VALUE_COLORMAP,
166
+ CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
167
+ CoordinationType.OBS_COLOR_ENCODING,
168
+ CoordinationType.ADDITIONAL_OBS_SETS,
169
+ CoordinationType.MOLECULE_HIGHLIGHT,
170
+ CoordinationType.TOOLTIPS_VISIBLE,
171
+ CoordinationType.FILE_UID,
172
+ CoordinationType.SPATIAL_TARGET_C,
173
+ CoordinationType.SPATIAL_LAYER_VISIBLE,
174
+ CoordinationType.SPATIAL_LAYER_OPACITY,
175
+ CoordinationType.SPATIAL_LAYER_COLORMAP,
176
+ CoordinationType.SPATIAL_LAYER_TRANSPARENT_COLOR,
177
+ CoordinationType.SPATIAL_LAYER_MODEL_MATRIX,
178
+ CoordinationType.SPATIAL_CHANNEL_COLOR,
179
+ CoordinationType.SPATIAL_SEGMENTATION_FILLED,
180
+ CoordinationType.SPATIAL_SEGMENTATION_STROKE_WIDTH,
181
+ CoordinationType.IMAGE_LAYER,
182
+ CoordinationType.SEGMENTATION_LAYER,
183
+ CoordinationType.IMAGE_CHANNEL,
184
+ CoordinationType.SEGMENTATION_CHANNEL,
185
+ CoordinationType.SPATIAL_CHANNEL_VISIBLE,
186
+ CoordinationType.SPATIAL_CHANNEL_OPACITY,
187
+ CoordinationType.SPATIAL_CHANNEL_WINDOW,
188
+ CoordinationType.SPATIAL_RENDERING_MODE,
189
+ CoordinationType.VOLUMETRIC_RENDERING_ALGORITHM,
190
+ CoordinationType.SPATIAL_TARGET_RESOLUTION,
191
+ CoordinationType.SPATIAL_SLICE_X,
192
+ CoordinationType.SPATIAL_SLICE_Y,
193
+ CoordinationType.SPATIAL_SLICE_Z,
194
+ CoordinationType.SPOT_LAYER,
195
+ CoordinationType.POINT_LAYER,
196
+ CoordinationType.SPATIAL_SPOT_RADIUS,
197
+ CoordinationType.SPATIAL_SPOT_FILLED,
198
+ CoordinationType.SPATIAL_SPOT_STROKE_WIDTH,
199
+ CoordinationType.SPATIAL_LAYER_COLOR,
200
+ CoordinationType.PIXEL_HIGHLIGHT,
201
+ CoordinationType.TOOLTIP_CROSSHAIRS_VISIBLE,
202
+ CoordinationType.LEGEND_VISIBLE,
203
+ CoordinationType.SPATIAL_CHANNEL_LABELS_VISIBLE,
204
+ CoordinationType.SPATIAL_CHANNEL_LABELS_ORIENTATION,
205
+ CoordinationType.SPATIAL_CHANNEL_LABEL_SIZE,
206
+ ],
136
207
  [ViewType.HEATMAP]: [
137
208
  CoordinationType.DATASET,
138
209
  CoordinationType.OBS_TYPE,
@@ -238,6 +309,61 @@ export const COMPONENT_COORDINATION_TYPES = {
238
309
  CoordinationType.SPATIAL_ROTATION_ORBIT,
239
310
  CoordinationType.SPATIAL_ORBIT_AXIS,
240
311
  ],
312
+ [ViewType.LAYER_CONTROLLER_BETA]: [
313
+ CoordinationType.META_COORDINATION_SCOPES,
314
+ CoordinationType.META_COORDINATION_SCOPES_BY,
315
+ CoordinationType.DATASET,
316
+ CoordinationType.OBS_TYPE,
317
+ CoordinationType.FEATURE_TYPE,
318
+ CoordinationType.FEATURE_VALUE_TYPE,
319
+ CoordinationType.SPATIAL_POINT_LAYER,
320
+ CoordinationType.SPATIAL_NEIGHBORHOOD_LAYER,
321
+ CoordinationType.SPATIAL_ZOOM,
322
+ CoordinationType.SPATIAL_TARGET_X,
323
+ CoordinationType.SPATIAL_TARGET_Y,
324
+ CoordinationType.SPATIAL_TARGET_Z,
325
+ CoordinationType.SPATIAL_TARGET_T,
326
+ CoordinationType.SPATIAL_ROTATION_X,
327
+ CoordinationType.SPATIAL_ROTATION_Y,
328
+ CoordinationType.SPATIAL_ROTATION_Z,
329
+ CoordinationType.SPATIAL_ROTATION_ORBIT,
330
+ CoordinationType.SPATIAL_ORBIT_AXIS,
331
+ CoordinationType.FILE_UID,
332
+ CoordinationType.SPATIAL_TARGET_C,
333
+ CoordinationType.SPATIAL_LAYER_VISIBLE,
334
+ CoordinationType.SPATIAL_LAYER_OPACITY,
335
+ CoordinationType.SPATIAL_LAYER_COLORMAP,
336
+ CoordinationType.SPATIAL_LAYER_TRANSPARENT_COLOR,
337
+ CoordinationType.SPATIAL_LAYER_MODEL_MATRIX,
338
+ CoordinationType.SPATIAL_CHANNEL_COLOR,
339
+ CoordinationType.SPATIAL_SEGMENTATION_FILLED,
340
+ CoordinationType.SPATIAL_SEGMENTATION_STROKE_WIDTH,
341
+ CoordinationType.IMAGE_CHANNEL,
342
+ CoordinationType.SEGMENTATION_CHANNEL,
343
+ CoordinationType.SPATIAL_CHANNEL_VISIBLE,
344
+ CoordinationType.SPATIAL_CHANNEL_OPACITY,
345
+ CoordinationType.SPATIAL_CHANNEL_WINDOW,
346
+ CoordinationType.PHOTOMETRIC_INTERPRETATION,
347
+ CoordinationType.SPATIAL_RENDERING_MODE,
348
+ CoordinationType.VOLUMETRIC_RENDERING_ALGORITHM,
349
+ CoordinationType.SPATIAL_TARGET_RESOLUTION,
350
+ CoordinationType.SPATIAL_SLICE_X,
351
+ CoordinationType.SPATIAL_SLICE_Y,
352
+ CoordinationType.SPATIAL_SLICE_Z,
353
+ CoordinationType.SPOT_LAYER,
354
+ CoordinationType.POINT_LAYER,
355
+ CoordinationType.SPATIAL_SPOT_RADIUS,
356
+ CoordinationType.SPATIAL_SPOT_FILLED,
357
+ CoordinationType.SPATIAL_SPOT_STROKE_WIDTH,
358
+ CoordinationType.SPATIAL_LAYER_COLOR,
359
+ CoordinationType.OBS_COLOR_ENCODING,
360
+ CoordinationType.TOOLTIPS_VISIBLE,
361
+ CoordinationType.TOOLTIP_CROSSHAIRS_VISIBLE,
362
+ CoordinationType.LEGEND_VISIBLE,
363
+ CoordinationType.SPATIAL_CHANNEL_LABELS_VISIBLE,
364
+ CoordinationType.SPATIAL_CHANNEL_LABELS_ORIENTATION,
365
+ CoordinationType.SPATIAL_CHANNEL_LABEL_SIZE,
366
+ ],
241
367
  [ViewType.GENOMIC_PROFILES]: [
242
368
  CoordinationType.DATASET,
243
369
  CoordinationType.OBS_TYPE,
package/src/version.json CHANGED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "note": "This file is autogenerated by .changeset/post-changelog.mjs.",
3
- "version": "3.1.2",
4
- "date": "2023-08-31",
3
+ "version": "3.2.0",
4
+ "date": "2023-09-12",
5
5
  "branch": "changeset-release/main",
6
- "hash": "21819ea1"
6
+ "hash": "13836ae8"
7
7
  }