@vitessce/constants-internal 2.0.3 → 3.0.0

package/dist/{index.mjs → index.js}

@@ -26,7 +26,9 @@ const DataType = {
   GENOMIC_PROFILES: "genomic-profiles"
 };
 const FileType = {
+  // Joint file types
   ANNDATA_ZARR: "anndata.zarr",
+  // Atomic file types
   OBS_EMBEDDING_CSV: "obsEmbedding.csv",
   OBS_LOCATIONS_CSV: "obsLocations.csv",
   OBS_LABELS_CSV: "obsLabels.csv",
@@ -36,6 +38,7 @@ const FileType = {
   OBS_SETS_CSV: "obsSets.csv",
   OBS_SETS_JSON: "obsSets.json",
   IMAGE_OME_ZARR: "image.ome-zarr",
+  // AnnData
   OBS_FEATURE_MATRIX_ANNDATA_ZARR: "obsFeatureMatrix.anndata.zarr",
   OBS_SETS_ANNDATA_ZARR: "obsSets.anndata.zarr",
   OBS_EMBEDDING_ANNDATA_ZARR: "obsEmbedding.anndata.zarr",
@@ -43,6 +46,7 @@ const FileType = {
   OBS_SEGMENTATIONS_ANNDATA_ZARR: "obsSegmentations.anndata.zarr",
   OBS_LABELS_ANNDATA_ZARR: "obsLabels.anndata.zarr",
   FEATURE_LABELS_ANNDATA_ZARR: "featureLabels.anndata.zarr",
+  // MuData
   OBS_FEATURE_MATRIX_MUDATA_ZARR: "obsFeatureMatrix.mudata.zarr",
   OBS_SETS_MUDATA_ZARR: "obsSets.mudata.zarr",
   OBS_EMBEDDING_MUDATA_ZARR: "obsEmbedding.mudata.zarr",
@@ -52,18 +56,30 @@ const FileType = {
   FEATURE_LABELS_MUDATA_ZARR: "featureLabels.mudata.zarr",
   GENOMIC_PROFILES_ZARR: "genomic-profiles.zarr",
   NEIGHBORHOODS_JSON: "neighborhoods.json",
+  // OME-TIFF
+  IMAGE_OME_TIFF: "image.ome-tiff",
+  OBS_SEGMENTATIONS_OME_TIFF: "obsSegmentations.ome-tiff",
+  // New file types to support old file types:
+  // - cells.json
   OBS_EMBEDDING_CELLS_JSON: "obsEmbedding.cells.json",
   OBS_SEGMENTATIONS_CELLS_JSON: "obsSegmentations.cells.json",
   OBS_LOCATIONS_CELLS_JSON: "obsLocations.cells.json",
   OBS_LABELS_CELLS_JSON: "obsLabels.cells.json",
+  // - cell-sets.json
   OBS_SETS_CELL_SETS_JSON: "obsSets.cell-sets.json",
+  // - genes.json
   OBS_FEATURE_MATRIX_GENES_JSON: "obsFeatureMatrix.genes.json",
+  // - clusters.json
   OBS_FEATURE_MATRIX_CLUSTERS_JSON: "obsFeatureMatrix.clusters.json",
+  // - expression-matrix.zarr
   OBS_FEATURE_MATRIX_EXPRESSION_MATRIX_ZARR: "obsFeatureMatrix.expression-matrix.zarr",
+  // - raster.json
   IMAGE_RASTER_JSON: "image.raster.json",
   OBS_SEGMENTATIONS_RASTER_JSON: "obsSegmentations.raster.json",
+  // - molecules.json
   OBS_LOCATIONS_MOLECULES_JSON: "obsLocations.molecules.json",
   OBS_LABELS_MOLECULES_JSON: "obsLabels.molecules.json",
+  // Legacy joint file types
   CELLS_JSON: "cells.json",
   CELL_SETS_JSON: "cell-sets.json",
   ANNDATA_CELL_SETS_ZARR: "anndata-cell-sets.zarr",
@@ -78,10 +94,12 @@ const FileType = {
 };
 const CoordinationType = {
   DATASET: "dataset",
+  // Entity types
   OBS_TYPE: "obsType",
   FEATURE_TYPE: "featureType",
   FEATURE_VALUE_TYPE: "featureValueType",
   OBS_LABELS_TYPE: "obsLabelsType",
+  // Other types
   EMBEDDING_TYPE: "embeddingType",
   EMBEDDING_ZOOM: "embeddingZoom",
   EMBEDDING_ROTATION: "embeddingRotation",
@@ -114,6 +132,7 @@ const CoordinationType = {
   OBS_HIGHLIGHT: "obsHighlight",
   OBS_SET_SELECTION: "obsSetSelection",
   OBS_SET_HIGHLIGHT: "obsSetHighlight",
+  OBS_SET_EXPANSION: "obsSetExpansion",
   OBS_SET_COLOR: "obsSetColor",
   FEATURE_FILTER: "featureFilter",
   FEATURE_HIGHLIGHT: "featureHighlight",
@@ -131,10 +150,12 @@ const CoordinationType = {
   GENOMIC_TARGET_X: "genomicTargetX",
   GENOMIC_TARGET_Y: "genomicTargetY",
   ADDITIONAL_OBS_SETS: "additionalObsSets",
+  // TODO: use obsHighlight rather than moleculeHighlight.
   MOLECULE_HIGHLIGHT: "moleculeHighlight",
   GATING_FEATURE_SELECTION_X: "gatingFeatureSelectionX",
   GATING_FEATURE_SELECTION_Y: "gatingFeatureSelectionY",
-  FEATURE_VALUE_TRANSFORM_COEFFICIENT: "featureValueTransformCoefficient"
+  FEATURE_VALUE_TRANSFORM_COEFFICIENT: "featureValueTransformCoefficient",
+  TOOLTIPS_VISIBLE: "tooltipsVisible"
 };
 const STATUS = {
   LOADING: "loading",
@@ -142,6 +163,7 @@ const STATUS = {
   ERROR: "error"
 };
 const FILE_TYPE_DATA_TYPE_MAPPING = {
+  // For new file types
   [FileType.OBS_EMBEDDING_CSV]: DataType.OBS_EMBEDDING,
   [FileType.OBS_LOCATIONS_CSV]: DataType.OBS_LOCATIONS,
   [FileType.OBS_LABELS_CSV]: DataType.OBS_LABELS,
@@ -158,6 +180,8 @@ const FILE_TYPE_DATA_TYPE_MAPPING = {
   [FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
   [FileType.OBS_LABELS_ANNDATA_ZARR]: DataType.OBS_LABELS,
   [FileType.FEATURE_LABELS_ANNDATA_ZARR]: DataType.FEATURE_LABELS,
+  [FileType.IMAGE_OME_TIFF]: DataType.IMAGE,
+  [FileType.OBS_SEGMENTATIONS_OME_TIFF]: DataType.OBS_SEGMENTATIONS,
   [FileType.OBS_FEATURE_MATRIX_MUDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
   [FileType.OBS_SETS_MUDATA_ZARR]: DataType.OBS_SETS,
   [FileType.OBS_EMBEDDING_MUDATA_ZARR]: DataType.OBS_EMBEDDING,
@@ -165,6 +189,7 @@ const FILE_TYPE_DATA_TYPE_MAPPING = {
   [FileType.OBS_SEGMENTATIONS_MUDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
   [FileType.OBS_LABELS_MUDATA_ZARR]: DataType.OBS_LABELS,
   [FileType.FEATURE_LABELS_MUDATA_ZARR]: DataType.FEATURE_LABELS,
+  // For new file types to support old file types
   [FileType.OBS_EMBEDDING_CELLS_JSON]: DataType.OBS_EMBEDDING,
   [FileType.OBS_LOCATIONS_CELLS_JSON]: DataType.OBS_LOCATIONS,
   [FileType.OBS_SEGMENTATIONS_CELLS_JSON]: DataType.OBS_SEGMENTATIONS,
@@ -177,6 +202,7 @@ const FILE_TYPE_DATA_TYPE_MAPPING = {
   [FileType.OBS_SEGMENTATIONS_RASTER_JSON]: DataType.OBS_SEGMENTATIONS,
   [FileType.OBS_LOCATIONS_MOLECULES_JSON]: DataType.OBS_LOCATIONS,
   [FileType.OBS_LABELS_MOLECULES_JSON]: DataType.OBS_LABELS,
+  // For old file types
   [FileType.GENOMIC_PROFILES_ZARR]: DataType.GENOMIC_PROFILES,
   [FileType.NEIGHBORHOODS_JSON]: DataType.NEIGHBORHOODS
 };
@@ -210,64 +236,6 @@ const DATA_TYPE_COORDINATION_VALUE_USAGE = {
   [DataType.IMAGE]: [],
   [DataType.NEIGHBORHOODS]: []
 };
-const DEFAULT_COORDINATION_VALUES = {
-  [CoordinationType.OBS_TYPE]: "cell",
-  [CoordinationType.FEATURE_TYPE]: "gene",
-  [CoordinationType.FEATURE_VALUE_TYPE]: "expression",
-  [CoordinationType.OBS_LABELS_TYPE]: null,
-  [CoordinationType.EMBEDDING_ZOOM]: null,
-  [CoordinationType.EMBEDDING_ROTATION]: 0,
-  [CoordinationType.EMBEDDING_TARGET_X]: null,
-  [CoordinationType.EMBEDDING_TARGET_Y]: null,
-  [CoordinationType.EMBEDDING_TARGET_Z]: 0,
-  [CoordinationType.EMBEDDING_OBS_SET_POLYGONS_VISIBLE]: false,
-  [CoordinationType.EMBEDDING_OBS_SET_LABELS_VISIBLE]: false,
-  [CoordinationType.EMBEDDING_OBS_SET_LABEL_SIZE]: 14,
-  [CoordinationType.EMBEDDING_OBS_RADIUS]: 1,
-  [CoordinationType.EMBEDDING_OBS_RADIUS_MODE]: "auto",
-  [CoordinationType.EMBEDDING_OBS_OPACITY]: 1,
-  [CoordinationType.EMBEDDING_OBS_OPACITY_MODE]: "auto",
-  [CoordinationType.SPATIAL_ZOOM]: null,
-  [CoordinationType.SPATIAL_ROTATION]: 0,
-  [CoordinationType.SPATIAL_TARGET_X]: null,
-  [CoordinationType.SPATIAL_TARGET_Y]: null,
-  [CoordinationType.SPATIAL_TARGET_Z]: null,
-  [CoordinationType.SPATIAL_ROTATION_X]: null,
-  [CoordinationType.SPATIAL_ROTATION_Y]: null,
-  [CoordinationType.SPATIAL_ROTATION_Z]: null,
-  [CoordinationType.SPATIAL_AXIS_FIXED]: false,
-  [CoordinationType.SPATIAL_ROTATION_ORBIT]: 0,
-  [CoordinationType.SPATIAL_ORBIT_AXIS]: "Y",
-  [CoordinationType.SPATIAL_IMAGE_LAYER]: null,
-  [CoordinationType.SPATIAL_SEGMENTATION_LAYER]: null,
-  [CoordinationType.SPATIAL_POINT_LAYER]: null,
-  [CoordinationType.SPATIAL_NEIGHBORHOOD_LAYER]: null,
-  [CoordinationType.HEATMAP_ZOOM_X]: 0,
-  [CoordinationType.HEATMAP_ZOOM_Y]: 0,
-  [CoordinationType.HEATMAP_TARGET_X]: 0,
-  [CoordinationType.HEATMAP_TARGET_Y]: 0,
-  [CoordinationType.FEATURE_VALUE_COLORMAP]: "plasma",
-  [CoordinationType.FEATURE_VALUE_COLORMAP_RANGE]: [0, 1],
-  [CoordinationType.FEATURE_VALUE_TRANSFORM]: null,
-  [CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT]: 1,
-  [CoordinationType.FEATURE_FILTER]: null,
-  [CoordinationType.FEATURE_HIGHLIGHT]: null,
-  [CoordinationType.FEATURE_SELECTION]: null,
-  [CoordinationType.OBS_FILTER]: null,
-  [CoordinationType.OBS_HIGHLIGHT]: null,
-  [CoordinationType.OBS_SET_SELECTION]: null,
-  [CoordinationType.OBS_SET_HIGHLIGHT]: null,
-  [CoordinationType.OBS_SET_COLOR]: null,
-  [CoordinationType.OBS_COLOR_ENCODING]: "cellSetSelection",
-  [CoordinationType.GENOMIC_ZOOM_X]: 0,
-  [CoordinationType.GENOMIC_ZOOM_Y]: 0,
-  [CoordinationType.GENOMIC_TARGET_X]: 15499999995e-1,
-  [CoordinationType.GENOMIC_TARGET_Y]: 15499999995e-1,
-  [CoordinationType.ADDITIONAL_OBS_SETS]: null,
-  [CoordinationType.MOLECULE_HIGHLIGHT]: null,
-  [CoordinationType.GATING_FEATURE_SELECTION_X]: null,
-  [CoordinationType.GATING_FEATURE_SELECTION_Y]: null
-};
 const AUTO_INDEPENDENT_COORDINATION_TYPES = [
   CoordinationType.HEATMAP_ZOOM_X,
   CoordinationType.HEATMAP_ZOOM_Y,
@@ -313,7 +281,8 @@ const COMPONENT_COORDINATION_TYPES = {
     CoordinationType.FEATURE_VALUE_COLORMAP,
     CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
     CoordinationType.OBS_COLOR_ENCODING,
-    CoordinationType.ADDITIONAL_OBS_SETS
+    CoordinationType.ADDITIONAL_OBS_SETS,
+    CoordinationType.TOOLTIPS_VISIBLE
   ],
   [ViewType.GATING]: [
     CoordinationType.DATASET,
@@ -381,7 +350,8 @@ const COMPONENT_COORDINATION_TYPES = {
     CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
     CoordinationType.OBS_COLOR_ENCODING,
     CoordinationType.ADDITIONAL_OBS_SETS,
-    CoordinationType.MOLECULE_HIGHLIGHT
+    CoordinationType.MOLECULE_HIGHLIGHT,
+    CoordinationType.TOOLTIPS_VISIBLE
   ],
   [ViewType.HEATMAP]: [
     CoordinationType.DATASET,
@@ -404,12 +374,14 @@ const COMPONENT_COORDINATION_TYPES = {
     CoordinationType.FEATURE_VALUE_COLORMAP,
     CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
     CoordinationType.OBS_COLOR_ENCODING,
-    CoordinationType.ADDITIONAL_OBS_SETS
+    CoordinationType.ADDITIONAL_OBS_SETS,
+    CoordinationType.TOOLTIPS_VISIBLE
   ],
   [ViewType.OBS_SETS]: [
     CoordinationType.DATASET,
     CoordinationType.OBS_TYPE,
     CoordinationType.OBS_SET_SELECTION,
+    CoordinationType.OBS_SET_EXPANSION,
     CoordinationType.OBS_SET_HIGHLIGHT,
     CoordinationType.OBS_SET_COLOR,
     CoordinationType.OBS_COLOR_ENCODING,
@@ -420,6 +392,7 @@ const COMPONENT_COORDINATION_TYPES = {
     CoordinationType.DATASET,
     CoordinationType.OBS_TYPE,
     CoordinationType.OBS_SET_SELECTION,
+    CoordinationType.OBS_SET_EXPANSION,
     CoordinationType.OBS_SET_HIGHLIGHT,
     CoordinationType.OBS_SET_COLOR,
     CoordinationType.ADDITIONAL_OBS_SETS
@@ -460,7 +433,11 @@ const COMPONENT_COORDINATION_TYPES = {
     CoordinationType.OBS_TYPE,
     CoordinationType.FEATURE_TYPE,
     CoordinationType.FEATURE_VALUE_TYPE,
-    CoordinationType.FEATURE_SELECTION
+    CoordinationType.FEATURE_SELECTION,
+    CoordinationType.ADDITIONAL_OBS_SETS,
+    CoordinationType.OBS_SET_COLOR,
+    CoordinationType.OBS_COLOR_ENCODING,
+    CoordinationType.OBS_SET_SELECTION
   ],
   [ViewType.LAYER_CONTROLLER]: [
     CoordinationType.DATASET,
@@ -514,10 +491,10 @@ const COMPONENT_COORDINATION_TYPES = {
   ]
 };
 const note = "This file is regenerated by push-demo.sh.";
-const version = "2.0.3";
-const branch = "release-v2.0.3";
-const date = "2023-02-07";
-const hash = "ca9494c3";
+const version = "3.0.0";
+const branch = "release-v3.0.0";
+const date = "2023-06-05";
+const hash = "74d01aab";
 const version$1 = {
   note,
   version,
@@ -530,7 +507,6 @@ export {
   COMPONENT_COORDINATION_TYPES,
   CoordinationType,
   DATA_TYPE_COORDINATION_VALUE_USAGE,
-  DEFAULT_COORDINATION_VALUES,
   DataType,
   FILE_TYPE_DATA_TYPE_MAPPING,
   FileType,

package/dist-tsc/constant-relationships.d.ts

@@ -0,0 +1,17 @@
+/**
+ * Mapping from file types to data types. Each file type
+ * should correspond to one data type. Multiple file types
+ * can map onto the same data type.
+ */
+export const FILE_TYPE_DATA_TYPE_MAPPING: {
+    [x: string]: string;
+};
+/**
+ * Store a mapping from data types to the coordination types used
+ * for matching using the coordinationValues field of file definitions.
+ * This enables inferring default values, simplifying view config writing.
+ */
+export const DATA_TYPE_COORDINATION_VALUE_USAGE: {
+    [x: string]: string[];
+};
+//# sourceMappingURL=constant-relationships.d.ts.map

package/dist-tsc/constant-relationships.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"constant-relationships.d.ts","sourceRoot":"","sources":["../src/constant-relationships.js"],"names":[],"mappings":"AAEA;;;;GAIG;AACH;;EA2CE;AAEF;;;;GAIG;AACH;;EA6BE"}

package/dist-tsc/constant-relationships.js

@@ -0,0 +1,85 @@
+import { FileType, DataType, CoordinationType } from './constants.js';
+/**
+ * Mapping from file types to data types. Each file type
+ * should correspond to one data type. Multiple file types
+ * can map onto the same data type.
+ */
+export const FILE_TYPE_DATA_TYPE_MAPPING = {
+    // For new file types
+    [FileType.OBS_EMBEDDING_CSV]: DataType.OBS_EMBEDDING,
+    [FileType.OBS_LOCATIONS_CSV]: DataType.OBS_LOCATIONS,
+    [FileType.OBS_LABELS_CSV]: DataType.OBS_LABELS,
+    [FileType.FEATURE_LABELS_CSV]: DataType.FEATURE_LABELS,
+    [FileType.OBS_FEATURE_MATRIX_CSV]: DataType.OBS_FEATURE_MATRIX,
+    [FileType.OBS_SEGMENTATIONS_JSON]: DataType.OBS_SEGMENTATIONS,
+    [FileType.OBS_SETS_CSV]: DataType.OBS_SETS,
+    [FileType.OBS_SETS_JSON]: DataType.OBS_SETS,
+    [FileType.IMAGE_OME_ZARR]: DataType.IMAGE,
+    [FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
+    [FileType.OBS_SETS_ANNDATA_ZARR]: DataType.OBS_SETS,
+    [FileType.OBS_EMBEDDING_ANNDATA_ZARR]: DataType.OBS_EMBEDDING,
+    [FileType.OBS_LOCATIONS_ANNDATA_ZARR]: DataType.OBS_LOCATIONS,
+    [FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
+    [FileType.OBS_LABELS_ANNDATA_ZARR]: DataType.OBS_LABELS,
+    [FileType.FEATURE_LABELS_ANNDATA_ZARR]: DataType.FEATURE_LABELS,
+    [FileType.IMAGE_OME_TIFF]: DataType.IMAGE,
+    [FileType.OBS_SEGMENTATIONS_OME_TIFF]: DataType.OBS_SEGMENTATIONS,
+    [FileType.OBS_FEATURE_MATRIX_MUDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
+    [FileType.OBS_SETS_MUDATA_ZARR]: DataType.OBS_SETS,
+    [FileType.OBS_EMBEDDING_MUDATA_ZARR]: DataType.OBS_EMBEDDING,
+    [FileType.OBS_LOCATIONS_MUDATA_ZARR]: DataType.OBS_LOCATIONS,
+    [FileType.OBS_SEGMENTATIONS_MUDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
+    [FileType.OBS_LABELS_MUDATA_ZARR]: DataType.OBS_LABELS,
+    [FileType.FEATURE_LABELS_MUDATA_ZARR]: DataType.FEATURE_LABELS,
+    // For new file types to support old file types
+    [FileType.OBS_EMBEDDING_CELLS_JSON]: DataType.OBS_EMBEDDING,
+    [FileType.OBS_LOCATIONS_CELLS_JSON]: DataType.OBS_LOCATIONS,
+    [FileType.OBS_SEGMENTATIONS_CELLS_JSON]: DataType.OBS_SEGMENTATIONS,
+    [FileType.OBS_LABELS_CELLS_JSON]: DataType.OBS_LABELS,
+    [FileType.OBS_SETS_CELL_SETS_JSON]: DataType.OBS_SETS,
+    [FileType.OBS_FEATURE_MATRIX_GENES_JSON]: DataType.OBS_FEATURE_MATRIX,
+    [FileType.OBS_FEATURE_MATRIX_CLUSTERS_JSON]: DataType.OBS_FEATURE_MATRIX,
+    [FileType.OBS_FEATURE_MATRIX_EXPRESSION_MATRIX_ZARR]: DataType.OBS_FEATURE_MATRIX,
+    [FileType.IMAGE_RASTER_JSON]: DataType.IMAGE,
+    [FileType.OBS_SEGMENTATIONS_RASTER_JSON]: DataType.OBS_SEGMENTATIONS,
+    [FileType.OBS_LOCATIONS_MOLECULES_JSON]: DataType.OBS_LOCATIONS,
+    [FileType.OBS_LABELS_MOLECULES_JSON]: DataType.OBS_LABELS,
+    // For old file types
+    [FileType.GENOMIC_PROFILES_ZARR]: DataType.GENOMIC_PROFILES,
+    [FileType.NEIGHBORHOODS_JSON]: DataType.NEIGHBORHOODS,
+};
+/**
+ * Store a mapping from data types to the coordination types used
+ * for matching using the coordinationValues field of file definitions.
+ * This enables inferring default values, simplifying view config writing.
+ */
+export const DATA_TYPE_COORDINATION_VALUE_USAGE = {
+    [DataType.OBS_SEGMENTATIONS]: [
+        CoordinationType.OBS_TYPE,
+    ],
+    [DataType.OBS_EMBEDDING]: [
+        CoordinationType.OBS_TYPE,
+        CoordinationType.EMBEDDING_TYPE,
+    ],
+    [DataType.OBS_LOCATIONS]: [
+        CoordinationType.OBS_TYPE,
+    ],
+    [DataType.OBS_LABELS]: [
+        CoordinationType.OBS_TYPE,
+        CoordinationType.OBS_LABELS_TYPE,
+    ],
+    [DataType.FEATURE_LABELS]: [
+        CoordinationType.FEATURE_TYPE,
+    ],
+    [DataType.OBS_SETS]: [
+        CoordinationType.OBS_TYPE,
+    ],
+    [DataType.OBS_FEATURE_MATRIX]: [
+        CoordinationType.OBS_TYPE,
+        CoordinationType.FEATURE_TYPE,
+        CoordinationType.FEATURE_VALUE_TYPE,
+    ],
+    [DataType.GENOMIC_PROFILES]: [],
+    [DataType.IMAGE]: [],
+    [DataType.NEIGHBORHOODS]: [],
+};

package/dist-tsc/constant-relationships.test.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=constant-relationships.test.d.ts.map

package/dist-tsc/constant-relationships.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"constant-relationships.test.d.ts","sourceRoot":"","sources":["../src/constant-relationships.test.js"],"names":[],"mappings":""}

package/dist-tsc/constant-relationships.test.js

@@ -0,0 +1,11 @@
+import { DataType } from './constants.js';
+import { DATA_TYPE_COORDINATION_VALUE_USAGE, } from './constant-relationships.js';
+describe('src/app/constant-relationships.js', () => {
+    describe('DataType-to-CoordinationType usage mapping', () => {
+        it('every data type is mapped to an array of coordination types', () => {
+            const dataTypes = Object.values(DataType).sort();
+            const mappedDataTypes = Object.keys(DATA_TYPE_COORDINATION_VALUE_USAGE).sort();
+            expect(dataTypes.length).toEqual(mappedDataTypes.length);
+        });
+    });
+});

package/dist-tsc/constants.d.ts

@@ -0,0 +1,150 @@
+export namespace ViewType {
+    const DESCRIPTION: string;
+    const STATUS: string;
+    const SCATTERPLOT: string;
+    const SPATIAL: string;
+    const HEATMAP: string;
+    const LAYER_CONTROLLER: string;
+    const GENOMIC_PROFILES: string;
+    const GATING: string;
+    const FEATURE_LIST: string;
+    const OBS_SETS: string;
+    const OBS_SET_SIZES: string;
+    const OBS_SET_FEATURE_VALUE_DISTRIBUTION: string;
+    const FEATURE_VALUE_HISTOGRAM: string;
+}
+export namespace DataType {
+    export const OBS_LABELS: string;
+    export const OBS_EMBEDDING: string;
+    export const OBS_LOCATIONS: string;
+    export const OBS_FEATURE_MATRIX: string;
+    const OBS_SETS_1: string;
+    export { OBS_SETS_1 as OBS_SETS };
+    export const FEATURE_LABELS: string;
+    export const IMAGE: string;
+    export const OBS_SEGMENTATIONS: string;
+    export const NEIGHBORHOODS: string;
+    const GENOMIC_PROFILES_1: string;
+    export { GENOMIC_PROFILES_1 as GENOMIC_PROFILES };
+}
+export namespace FileType {
+    const ANNDATA_ZARR: string;
+    const OBS_EMBEDDING_CSV: string;
+    const OBS_LOCATIONS_CSV: string;
+    const OBS_LABELS_CSV: string;
+    const FEATURE_LABELS_CSV: string;
+    const OBS_FEATURE_MATRIX_CSV: string;
+    const OBS_SEGMENTATIONS_JSON: string;
+    const OBS_SETS_CSV: string;
+    const OBS_SETS_JSON: string;
+    const IMAGE_OME_ZARR: string;
+    const OBS_FEATURE_MATRIX_ANNDATA_ZARR: string;
+    const OBS_SETS_ANNDATA_ZARR: string;
+    const OBS_EMBEDDING_ANNDATA_ZARR: string;
+    const OBS_LOCATIONS_ANNDATA_ZARR: string;
+    const OBS_SEGMENTATIONS_ANNDATA_ZARR: string;
+    const OBS_LABELS_ANNDATA_ZARR: string;
+    const FEATURE_LABELS_ANNDATA_ZARR: string;
+    const OBS_FEATURE_MATRIX_MUDATA_ZARR: string;
+    const OBS_SETS_MUDATA_ZARR: string;
+    const OBS_EMBEDDING_MUDATA_ZARR: string;
+    const OBS_LOCATIONS_MUDATA_ZARR: string;
+    const OBS_SEGMENTATIONS_MUDATA_ZARR: string;
+    const OBS_LABELS_MUDATA_ZARR: string;
+    const FEATURE_LABELS_MUDATA_ZARR: string;
+    const GENOMIC_PROFILES_ZARR: string;
+    const NEIGHBORHOODS_JSON: string;
+    const IMAGE_OME_TIFF: string;
+    const OBS_SEGMENTATIONS_OME_TIFF: string;
+    const OBS_EMBEDDING_CELLS_JSON: string;
+    const OBS_SEGMENTATIONS_CELLS_JSON: string;
+    const OBS_LOCATIONS_CELLS_JSON: string;
+    const OBS_LABELS_CELLS_JSON: string;
+    const OBS_SETS_CELL_SETS_JSON: string;
+    const OBS_FEATURE_MATRIX_GENES_JSON: string;
+    const OBS_FEATURE_MATRIX_CLUSTERS_JSON: string;
+    const OBS_FEATURE_MATRIX_EXPRESSION_MATRIX_ZARR: string;
+    const IMAGE_RASTER_JSON: string;
+    const OBS_SEGMENTATIONS_RASTER_JSON: string;
+    const OBS_LOCATIONS_MOLECULES_JSON: string;
+    const OBS_LABELS_MOLECULES_JSON: string;
+    const CELLS_JSON: string;
+    const CELL_SETS_JSON: string;
+    const ANNDATA_CELL_SETS_ZARR: string;
+    const ANNDATA_CELLS_ZARR: string;
+    const EXPRESSION_MATRIX_ZARR: string;
+    const MOLECULES_JSON: string;
+    const RASTER_JSON: string;
+    const RASTER_OME_ZARR: string;
+    const CLUSTERS_JSON: string;
+    const GENES_JSON: string;
+    const ANNDATA_EXPRESSION_MATRIX_ZARR: string;
+}
+export namespace CoordinationType {
+    const DATASET: string;
+    const OBS_TYPE: string;
+    const FEATURE_TYPE: string;
+    const FEATURE_VALUE_TYPE: string;
+    const OBS_LABELS_TYPE: string;
+    const EMBEDDING_TYPE: string;
+    const EMBEDDING_ZOOM: string;
+    const EMBEDDING_ROTATION: string;
+    const EMBEDDING_TARGET_X: string;
+    const EMBEDDING_TARGET_Y: string;
+    const EMBEDDING_TARGET_Z: string;
+    const EMBEDDING_OBS_SET_POLYGONS_VISIBLE: string;
+    const EMBEDDING_OBS_SET_LABELS_VISIBLE: string;
+    const EMBEDDING_OBS_SET_LABEL_SIZE: string;
+    const EMBEDDING_OBS_RADIUS: string;
+    const EMBEDDING_OBS_RADIUS_MODE: string;
+    const EMBEDDING_OBS_OPACITY: string;
+    const EMBEDDING_OBS_OPACITY_MODE: string;
+    const SPATIAL_ZOOM: string;
+    const SPATIAL_ROTATION: string;
+    const SPATIAL_TARGET_X: string;
+    const SPATIAL_TARGET_Y: string;
+    const SPATIAL_TARGET_Z: string;
+    const SPATIAL_ROTATION_X: string;
+    const SPATIAL_ROTATION_Y: string;
+    const SPATIAL_ROTATION_Z: string;
+    const SPATIAL_ROTATION_ORBIT: string;
+    const SPATIAL_ORBIT_AXIS: string;
+    const SPATIAL_AXIS_FIXED: string;
+    const HEATMAP_ZOOM_X: string;
+    const HEATMAP_ZOOM_Y: string;
+    const HEATMAP_TARGET_X: string;
+    const HEATMAP_TARGET_Y: string;
+    const OBS_FILTER: string;
+    const OBS_HIGHLIGHT: string;
+    const OBS_SET_SELECTION: string;
+    const OBS_SET_HIGHLIGHT: string;
+    const OBS_SET_EXPANSION: string;
+    const OBS_SET_COLOR: string;
+    const FEATURE_FILTER: string;
+    const FEATURE_HIGHLIGHT: string;
+    const FEATURE_SELECTION: string;
+    const FEATURE_VALUE_COLORMAP: string;
+    const FEATURE_VALUE_TRANSFORM: string;
+    const FEATURE_VALUE_COLORMAP_RANGE: string;
+    const OBS_COLOR_ENCODING: string;
+    const SPATIAL_IMAGE_LAYER: string;
+    const SPATIAL_SEGMENTATION_LAYER: string;
+    const SPATIAL_POINT_LAYER: string;
+    const SPATIAL_NEIGHBORHOOD_LAYER: string;
+    const GENOMIC_ZOOM_X: string;
+    const GENOMIC_ZOOM_Y: string;
+    const GENOMIC_TARGET_X: string;
+    const GENOMIC_TARGET_Y: string;
+    const ADDITIONAL_OBS_SETS: string;
+    const MOLECULE_HIGHLIGHT: string;
+    const GATING_FEATURE_SELECTION_X: string;
+    const GATING_FEATURE_SELECTION_Y: string;
+    const FEATURE_VALUE_TRANSFORM_COEFFICIENT: string;
+    const TOOLTIPS_VISIBLE: string;
+}
+export namespace STATUS {
+    const LOADING: string;
+    const SUCCESS: string;
+    const ERROR: string;
+}
+//# sourceMappingURL=constants.d.ts.map

package/dist-tsc/constants.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"constants.d.ts","sourceRoot":"","sources":["../src/constants.js"],"names":[],"mappings":""}

package/dist-tsc/constants.js

@@ -0,0 +1,173 @@
+/**
+ * This file defines the current constant values.
+ * To deprecate a value, add it to ./constants-old.js
+ * with a corresponding log message.
+ */
+export const ViewType = {
+    DESCRIPTION: 'description',
+    STATUS: 'status',
+    SCATTERPLOT: 'scatterplot',
+    SPATIAL: 'spatial',
+    HEATMAP: 'heatmap',
+    LAYER_CONTROLLER: 'layerController',
+    GENOMIC_PROFILES: 'genomicProfiles',
+    GATING: 'gating',
+    FEATURE_LIST: 'featureList',
+    OBS_SETS: 'obsSets',
+    OBS_SET_SIZES: 'obsSetSizes',
+    OBS_SET_FEATURE_VALUE_DISTRIBUTION: 'obsSetFeatureValueDistribution',
+    FEATURE_VALUE_HISTOGRAM: 'featureValueHistogram',
+};
+export const DataType = {
+    OBS_LABELS: 'obsLabels',
+    OBS_EMBEDDING: 'obsEmbedding',
+    OBS_LOCATIONS: 'obsLocations',
+    OBS_FEATURE_MATRIX: 'obsFeatureMatrix',
+    OBS_SETS: 'obsSets',
+    FEATURE_LABELS: 'featureLabels',
+    IMAGE: 'image',
+    OBS_SEGMENTATIONS: 'obsSegmentations',
+    NEIGHBORHOODS: 'neighborhoods',
+    GENOMIC_PROFILES: 'genomic-profiles',
+};
+export const FileType = {
+    // Joint file types
+    ANNDATA_ZARR: 'anndata.zarr',
+    // Atomic file types
+    OBS_EMBEDDING_CSV: 'obsEmbedding.csv',
+    OBS_LOCATIONS_CSV: 'obsLocations.csv',
+    OBS_LABELS_CSV: 'obsLabels.csv',
+    FEATURE_LABELS_CSV: 'featureLabels.csv',
+    OBS_FEATURE_MATRIX_CSV: 'obsFeatureMatrix.csv',
+    OBS_SEGMENTATIONS_JSON: 'obsSegmentations.json',
+    OBS_SETS_CSV: 'obsSets.csv',
+    OBS_SETS_JSON: 'obsSets.json',
+    IMAGE_OME_ZARR: 'image.ome-zarr',
+    // AnnData
+    OBS_FEATURE_MATRIX_ANNDATA_ZARR: 'obsFeatureMatrix.anndata.zarr',
+    OBS_SETS_ANNDATA_ZARR: 'obsSets.anndata.zarr',
+    OBS_EMBEDDING_ANNDATA_ZARR: 'obsEmbedding.anndata.zarr',
+    OBS_LOCATIONS_ANNDATA_ZARR: 'obsLocations.anndata.zarr',
+    OBS_SEGMENTATIONS_ANNDATA_ZARR: 'obsSegmentations.anndata.zarr',
+    OBS_LABELS_ANNDATA_ZARR: 'obsLabels.anndata.zarr',
+    FEATURE_LABELS_ANNDATA_ZARR: 'featureLabels.anndata.zarr',
+    // MuData
+    OBS_FEATURE_MATRIX_MUDATA_ZARR: 'obsFeatureMatrix.mudata.zarr',
+    OBS_SETS_MUDATA_ZARR: 'obsSets.mudata.zarr',
+    OBS_EMBEDDING_MUDATA_ZARR: 'obsEmbedding.mudata.zarr',
+    OBS_LOCATIONS_MUDATA_ZARR: 'obsLocations.mudata.zarr',
+    OBS_SEGMENTATIONS_MUDATA_ZARR: 'obsSegmentations.mudata.zarr',
+    OBS_LABELS_MUDATA_ZARR: 'obsLabels.mudata.zarr',
+    FEATURE_LABELS_MUDATA_ZARR: 'featureLabels.mudata.zarr',
+    GENOMIC_PROFILES_ZARR: 'genomic-profiles.zarr',
+    NEIGHBORHOODS_JSON: 'neighborhoods.json',
+    // OME-TIFF
+    IMAGE_OME_TIFF: 'image.ome-tiff',
+    OBS_SEGMENTATIONS_OME_TIFF: 'obsSegmentations.ome-tiff',
+    // New file types to support old file types:
+    // - cells.json
+    OBS_EMBEDDING_CELLS_JSON: 'obsEmbedding.cells.json',
+    OBS_SEGMENTATIONS_CELLS_JSON: 'obsSegmentations.cells.json',
+    OBS_LOCATIONS_CELLS_JSON: 'obsLocations.cells.json',
+    OBS_LABELS_CELLS_JSON: 'obsLabels.cells.json',
+    // - cell-sets.json
+    OBS_SETS_CELL_SETS_JSON: 'obsSets.cell-sets.json',
+    // - genes.json
+    OBS_FEATURE_MATRIX_GENES_JSON: 'obsFeatureMatrix.genes.json',
+    // - clusters.json
+    OBS_FEATURE_MATRIX_CLUSTERS_JSON: 'obsFeatureMatrix.clusters.json',
+    // - expression-matrix.zarr
+    OBS_FEATURE_MATRIX_EXPRESSION_MATRIX_ZARR: 'obsFeatureMatrix.expression-matrix.zarr',
+    // - raster.json
+    IMAGE_RASTER_JSON: 'image.raster.json',
+    OBS_SEGMENTATIONS_RASTER_JSON: 'obsSegmentations.raster.json',
+    // - molecules.json
+    OBS_LOCATIONS_MOLECULES_JSON: 'obsLocations.molecules.json',
+    OBS_LABELS_MOLECULES_JSON: 'obsLabels.molecules.json',
+    // Legacy joint file types
+    CELLS_JSON: 'cells.json',
+    CELL_SETS_JSON: 'cell-sets.json',
+    ANNDATA_CELL_SETS_ZARR: 'anndata-cell-sets.zarr',
+    ANNDATA_CELLS_ZARR: 'anndata-cells.zarr',
+    EXPRESSION_MATRIX_ZARR: 'expression-matrix.zarr',
+    MOLECULES_JSON: 'molecules.json',
+    RASTER_JSON: 'raster.json',
+    RASTER_OME_ZARR: 'raster.ome-zarr',
+    CLUSTERS_JSON: 'clusters.json',
+    GENES_JSON: 'genes.json',
+    ANNDATA_EXPRESSION_MATRIX_ZARR: 'anndata-expression-matrix.zarr',
+};
+/**
+ * Constants representing names of coordination types,
+ * to help prevent typos.
+ */
+export const CoordinationType = {
+    DATASET: 'dataset',
+    // Entity types
+    OBS_TYPE: 'obsType',
+    FEATURE_TYPE: 'featureType',
+    FEATURE_VALUE_TYPE: 'featureValueType',
+    OBS_LABELS_TYPE: 'obsLabelsType',
+    // Other types
+    EMBEDDING_TYPE: 'embeddingType',
+    EMBEDDING_ZOOM: 'embeddingZoom',
+    EMBEDDING_ROTATION: 'embeddingRotation',
+    EMBEDDING_TARGET_X: 'embeddingTargetX',
+    EMBEDDING_TARGET_Y: 'embeddingTargetY',
+    EMBEDDING_TARGET_Z: 'embeddingTargetZ',
+    EMBEDDING_OBS_SET_POLYGONS_VISIBLE: 'embeddingObsSetPolygonsVisible',
+    EMBEDDING_OBS_SET_LABELS_VISIBLE: 'embeddingObsSetLabelsVisible',
+    EMBEDDING_OBS_SET_LABEL_SIZE: 'embeddingObsSetLabelSize',
+    EMBEDDING_OBS_RADIUS: 'embeddingObsRadius',
+    EMBEDDING_OBS_RADIUS_MODE: 'embeddingObsRadiusMode',
+    EMBEDDING_OBS_OPACITY: 'embeddingObsOpacity',
+    EMBEDDING_OBS_OPACITY_MODE: 'embeddingObsOpacityMode',
+    SPATIAL_ZOOM: 'spatialZoom',
+    SPATIAL_ROTATION: 'spatialRotation',
+    SPATIAL_TARGET_X: 'spatialTargetX',
+    SPATIAL_TARGET_Y: 'spatialTargetY',
+    SPATIAL_TARGET_Z: 'spatialTargetZ',
+    SPATIAL_ROTATION_X: 'spatialRotationX',
+    SPATIAL_ROTATION_Y: 'spatialRotationY',
+    SPATIAL_ROTATION_Z: 'spatialRotationZ',
+    SPATIAL_ROTATION_ORBIT: 'spatialRotationOrbit',
+    SPATIAL_ORBIT_AXIS: 'spatialOrbitAxis',
+    SPATIAL_AXIS_FIXED: 'spatialAxisFixed',
+    HEATMAP_ZOOM_X: 'heatmapZoomX',
+    HEATMAP_ZOOM_Y: 'heatmapZoomY',
+    HEATMAP_TARGET_X: 'heatmapTargetX',
+    HEATMAP_TARGET_Y: 'heatmapTargetY',
+    OBS_FILTER: 'obsFilter',
+    OBS_HIGHLIGHT: 'obsHighlight',
+    OBS_SET_SELECTION: 'obsSetSelection',
+    OBS_SET_HIGHLIGHT: 'obsSetHighlight',
+    OBS_SET_EXPANSION: 'obsSetExpansion',
+    OBS_SET_COLOR: 'obsSetColor',
+    FEATURE_FILTER: 'featureFilter',
+    FEATURE_HIGHLIGHT: 'featureHighlight',
+    FEATURE_SELECTION: 'featureSelection',
+    FEATURE_VALUE_COLORMAP: 'featureValueColormap',
+    FEATURE_VALUE_TRANSFORM: 'featureValueTransform',
+    FEATURE_VALUE_COLORMAP_RANGE: 'featureValueColormapRange',
+    OBS_COLOR_ENCODING: 'obsColorEncoding',
+    SPATIAL_IMAGE_LAYER: 'spatialImageLayer',
+    SPATIAL_SEGMENTATION_LAYER: 'spatialSegmentationLayer',
+    SPATIAL_POINT_LAYER: 'spatialPointLayer',
+    SPATIAL_NEIGHBORHOOD_LAYER: 'spatialNeighborhoodLayer',
+    GENOMIC_ZOOM_X: 'genomicZoomX',
+    GENOMIC_ZOOM_Y: 'genomicZoomY',
+    GENOMIC_TARGET_X: 'genomicTargetX',
+    GENOMIC_TARGET_Y: 'genomicTargetY',
+    ADDITIONAL_OBS_SETS: 'additionalObsSets',
+    // TODO: use obsHighlight rather than moleculeHighlight.
+    MOLECULE_HIGHLIGHT: 'moleculeHighlight',
+    GATING_FEATURE_SELECTION_X: 'gatingFeatureSelectionX',
+    GATING_FEATURE_SELECTION_Y: 'gatingFeatureSelectionY',
+    FEATURE_VALUE_TRANSFORM_COEFFICIENT: 'featureValueTransformCoefficient',
+    TOOLTIPS_VISIBLE: 'tooltipsVisible',
+};
+export const STATUS = {
+    LOADING: 'loading',
+    SUCCESS: 'success',
+    ERROR: 'error',
+};

package/dist-tsc/coordination.d.ts

@@ -0,0 +1,14 @@
+export const AUTO_INDEPENDENT_COORDINATION_TYPES: string[];
+/**
+   * Mapping from component type to
+   * supported coordination object types.
+   * This mapping can be used to determine
+   * which pieces of state that a component will
+   * need to get/set.
+   * Keys here are the component registry keys.
+   */
+export const COMPONENT_COORDINATION_TYPES: {
+    [x: string]: string[];
+    higlass: string[];
+};
+//# sourceMappingURL=coordination.d.ts.map

package/dist-tsc/coordination.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"coordination.d.ts","sourceRoot":"","sources":["../src/coordination.js"],"names":[],"mappings":"AASA,2DAcE;AAEF;;;;;;;KAOK;AACL;;;EA8OE"}

package/dist-tsc/coordination.js

@@ -0,0 +1,270 @@
+import { CoordinationType, ViewType } from './constants.js';
+// The following coordination types should be
+// initialized to independent scopes when
+// initialized automatically.
+// These make the resulting view config
+// (after auto-initialization) behave
+// like "legacy" Vitessce (pre-coordination model).
+// TODO: delegate to PluginCoordinationType class
+export const AUTO_INDEPENDENT_COORDINATION_TYPES = [
+    CoordinationType.HEATMAP_ZOOM_X,
+    CoordinationType.HEATMAP_ZOOM_Y,
+    CoordinationType.HEATMAP_TARGET_X,
+    CoordinationType.HEATMAP_TARGET_Y,
+    CoordinationType.EMBEDDING_ZOOM,
+    CoordinationType.EMBEDDING_TARGET_X,
+    CoordinationType.EMBEDDING_TARGET_Y,
+    CoordinationType.EMBEDDING_TARGET_Z,
+    CoordinationType.EMBEDDING_OBS_SET_POLYGONS_VISIBLE,
+    CoordinationType.EMBEDDING_OBS_SET_LABELS_VISIBLE,
+    CoordinationType.EMBEDDING_OBS_SET_LABEL_SIZE,
+    CoordinationType.EMBEDDING_OBS_RADIUS,
+    CoordinationType.EMBEDDING_OBS_OPACITY,
+];
+/**
+   * Mapping from component type to
+   * supported coordination object types.
+   * This mapping can be used to determine
+   * which pieces of state that a component will
+   * need to get/set.
+   * Keys here are the component registry keys.
+   */
+export const COMPONENT_COORDINATION_TYPES = {
+    [ViewType.SCATTERPLOT]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.FEATURE_TYPE,
+        CoordinationType.FEATURE_VALUE_TYPE,
+        CoordinationType.OBS_LABELS_TYPE,
+        CoordinationType.EMBEDDING_TYPE,
+        CoordinationType.EMBEDDING_ZOOM,
+        CoordinationType.EMBEDDING_ROTATION,
+        CoordinationType.EMBEDDING_TARGET_X,
+        CoordinationType.EMBEDDING_TARGET_Y,
+        CoordinationType.EMBEDDING_TARGET_Z,
+        CoordinationType.EMBEDDING_OBS_SET_POLYGONS_VISIBLE,
+        CoordinationType.EMBEDDING_OBS_SET_LABELS_VISIBLE,
+        CoordinationType.EMBEDDING_OBS_SET_LABEL_SIZE,
+        CoordinationType.EMBEDDING_OBS_RADIUS,
+        CoordinationType.EMBEDDING_OBS_RADIUS_MODE,
+        CoordinationType.EMBEDDING_OBS_OPACITY,
+        CoordinationType.EMBEDDING_OBS_OPACITY_MODE,
+        CoordinationType.OBS_FILTER,
+        CoordinationType.OBS_HIGHLIGHT,
+        CoordinationType.OBS_SET_SELECTION,
+        CoordinationType.OBS_SET_HIGHLIGHT,
+        CoordinationType.OBS_SET_COLOR,
+        CoordinationType.FEATURE_HIGHLIGHT,
+        CoordinationType.FEATURE_SELECTION,
+        CoordinationType.FEATURE_VALUE_COLORMAP,
+        CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
+        CoordinationType.OBS_COLOR_ENCODING,
+        CoordinationType.ADDITIONAL_OBS_SETS,
+        CoordinationType.TOOLTIPS_VISIBLE,
+    ],
+    [ViewType.GATING]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.FEATURE_TYPE,
+        CoordinationType.FEATURE_VALUE_TYPE,
+        CoordinationType.EMBEDDING_TYPE,
+        CoordinationType.EMBEDDING_ZOOM,
+        CoordinationType.EMBEDDING_ROTATION,
+        CoordinationType.EMBEDDING_TARGET_X,
+        CoordinationType.EMBEDDING_TARGET_Y,
+        CoordinationType.EMBEDDING_TARGET_Z,
+        CoordinationType.EMBEDDING_OBS_SET_POLYGONS_VISIBLE,
+        CoordinationType.EMBEDDING_OBS_SET_LABELS_VISIBLE,
+        CoordinationType.EMBEDDING_OBS_SET_LABEL_SIZE,
+        CoordinationType.EMBEDDING_OBS_RADIUS,
+        CoordinationType.EMBEDDING_OBS_RADIUS_MODE,
+        CoordinationType.EMBEDDING_OBS_OPACITY,
+        CoordinationType.EMBEDDING_OBS_OPACITY_MODE,
+        CoordinationType.OBS_FILTER,
+        CoordinationType.OBS_HIGHLIGHT,
+        CoordinationType.OBS_SET_SELECTION,
+        CoordinationType.OBS_SET_HIGHLIGHT,
+        CoordinationType.OBS_SET_COLOR,
+        CoordinationType.FEATURE_HIGHLIGHT,
+        CoordinationType.FEATURE_SELECTION,
+        CoordinationType.FEATURE_VALUE_COLORMAP,
+        CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
+        CoordinationType.OBS_COLOR_ENCODING,
+        CoordinationType.ADDITIONAL_OBS_SETS,
+        CoordinationType.FEATURE_VALUE_TRANSFORM,
+        CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT,
+        CoordinationType.GATING_FEATURE_SELECTION_X,
+        CoordinationType.GATING_FEATURE_SELECTION_Y,
+    ],
+    [ViewType.SPATIAL]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.OBS_LABELS_TYPE,
+        CoordinationType.FEATURE_TYPE,
+        CoordinationType.FEATURE_VALUE_TYPE,
+        CoordinationType.SPATIAL_ZOOM,
+        CoordinationType.SPATIAL_ROTATION,
+        CoordinationType.SPATIAL_IMAGE_LAYER,
+        CoordinationType.SPATIAL_SEGMENTATION_LAYER,
+        CoordinationType.SPATIAL_POINT_LAYER,
+        CoordinationType.SPATIAL_NEIGHBORHOOD_LAYER,
+        CoordinationType.SPATIAL_TARGET_X,
+        CoordinationType.SPATIAL_TARGET_Y,
+        CoordinationType.SPATIAL_TARGET_Z,
+        CoordinationType.SPATIAL_ROTATION_X,
+        CoordinationType.SPATIAL_ROTATION_Y,
+        CoordinationType.SPATIAL_ROTATION_Z,
+        CoordinationType.SPATIAL_ROTATION_ORBIT,
+        CoordinationType.SPATIAL_ORBIT_AXIS,
+        CoordinationType.SPATIAL_AXIS_FIXED,
+        CoordinationType.OBS_FILTER,
+        CoordinationType.OBS_HIGHLIGHT,
+        CoordinationType.OBS_SET_SELECTION,
+        CoordinationType.OBS_SET_HIGHLIGHT,
+        CoordinationType.OBS_SET_COLOR,
+        CoordinationType.FEATURE_HIGHLIGHT,
+        CoordinationType.FEATURE_SELECTION,
+        CoordinationType.FEATURE_VALUE_COLORMAP,
+        CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
+        CoordinationType.OBS_COLOR_ENCODING,
+        CoordinationType.ADDITIONAL_OBS_SETS,
+        CoordinationType.MOLECULE_HIGHLIGHT,
+        CoordinationType.TOOLTIPS_VISIBLE,
+    ],
+    [ViewType.HEATMAP]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.OBS_LABELS_TYPE,
+        CoordinationType.FEATURE_TYPE,
+        CoordinationType.FEATURE_VALUE_TYPE,
+        CoordinationType.HEATMAP_ZOOM_X,
+        CoordinationType.HEATMAP_ZOOM_Y,
+        CoordinationType.HEATMAP_TARGET_X,
+        CoordinationType.HEATMAP_TARGET_Y,
+        CoordinationType.OBS_FILTER,
+        CoordinationType.OBS_HIGHLIGHT,
+        CoordinationType.OBS_SET_SELECTION,
+        CoordinationType.OBS_SET_HIGHLIGHT,
+        CoordinationType.OBS_SET_COLOR,
+        CoordinationType.FEATURE_FILTER,
+        CoordinationType.FEATURE_HIGHLIGHT,
+        CoordinationType.FEATURE_SELECTION,
+        CoordinationType.FEATURE_VALUE_COLORMAP,
+        CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
+        CoordinationType.OBS_COLOR_ENCODING,
+        CoordinationType.ADDITIONAL_OBS_SETS,
+        CoordinationType.TOOLTIPS_VISIBLE,
+    ],
+    [ViewType.OBS_SETS]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.OBS_SET_SELECTION,
+        CoordinationType.OBS_SET_EXPANSION,
+        CoordinationType.OBS_SET_HIGHLIGHT,
+        CoordinationType.OBS_SET_COLOR,
+        CoordinationType.OBS_COLOR_ENCODING,
+        CoordinationType.ADDITIONAL_OBS_SETS,
+        CoordinationType.FEATURE_SELECTION,
+    ],
+    [ViewType.OBS_SET_SIZES]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.OBS_SET_SELECTION,
+        CoordinationType.OBS_SET_EXPANSION,
+        CoordinationType.OBS_SET_HIGHLIGHT,
+        CoordinationType.OBS_SET_COLOR,
+        CoordinationType.ADDITIONAL_OBS_SETS,
+    ],
+    [ViewType.STATUS]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_HIGHLIGHT,
+        CoordinationType.FEATURE_HIGHLIGHT,
+        CoordinationType.OBS_SET_HIGHLIGHT,
+        CoordinationType.MOLECULE_HIGHLIGHT,
+    ],
+    [ViewType.FEATURE_LIST]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.FEATURE_TYPE,
+        CoordinationType.FEATURE_VALUE_TYPE,
+        CoordinationType.FEATURE_FILTER,
+        CoordinationType.FEATURE_HIGHLIGHT,
+        CoordinationType.FEATURE_SELECTION,
+        CoordinationType.OBS_COLOR_ENCODING,
+        CoordinationType.OBS_SET_SELECTION,
+    ],
+    [ViewType.OBS_SET_FEATURE_VALUE_DISTRIBUTION]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.FEATURE_TYPE,
+        CoordinationType.FEATURE_VALUE_TYPE,
+        CoordinationType.FEATURE_SELECTION,
+        CoordinationType.FEATURE_VALUE_TRANSFORM,
+        CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT,
+        CoordinationType.OBS_SET_SELECTION,
+        CoordinationType.OBS_SET_HIGHLIGHT,
+        CoordinationType.OBS_SET_COLOR,
+        CoordinationType.ADDITIONAL_OBS_SETS,
+    ],
+    [ViewType.FEATURE_VALUE_HISTOGRAM]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.FEATURE_TYPE,
+        CoordinationType.FEATURE_VALUE_TYPE,
+        CoordinationType.FEATURE_SELECTION,
+        CoordinationType.ADDITIONAL_OBS_SETS,
+        CoordinationType.OBS_SET_COLOR,
+        CoordinationType.OBS_COLOR_ENCODING,
+        CoordinationType.OBS_SET_SELECTION,
+    ],
+    [ViewType.LAYER_CONTROLLER]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.FEATURE_TYPE,
+        CoordinationType.FEATURE_VALUE_TYPE,
+        CoordinationType.SPATIAL_IMAGE_LAYER,
+        CoordinationType.SPATIAL_SEGMENTATION_LAYER,
+        CoordinationType.SPATIAL_POINT_LAYER,
+        CoordinationType.SPATIAL_NEIGHBORHOOD_LAYER,
+        CoordinationType.SPATIAL_ZOOM,
+        CoordinationType.SPATIAL_TARGET_X,
+        CoordinationType.SPATIAL_TARGET_Y,
+        CoordinationType.SPATIAL_TARGET_Z,
+        CoordinationType.SPATIAL_ROTATION_X,
+        CoordinationType.SPATIAL_ROTATION_Y,
+        CoordinationType.SPATIAL_ROTATION_Z,
+        CoordinationType.SPATIAL_ROTATION_ORBIT,
+        CoordinationType.SPATIAL_ORBIT_AXIS,
+    ],
+    [ViewType.GENOMIC_PROFILES]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.FEATURE_TYPE,
+        CoordinationType.FEATURE_VALUE_TYPE,
+        CoordinationType.GENOMIC_ZOOM_X,
+        CoordinationType.GENOMIC_ZOOM_Y,
+        CoordinationType.GENOMIC_TARGET_X,
+        CoordinationType.GENOMIC_TARGET_Y,
+        CoordinationType.FEATURE_FILTER,
+        CoordinationType.FEATURE_HIGHLIGHT,
+        CoordinationType.FEATURE_SELECTION,
+        CoordinationType.OBS_SET_SELECTION,
+        CoordinationType.OBS_SET_HIGHLIGHT,
+        CoordinationType.OBS_SET_COLOR,
+        CoordinationType.ADDITIONAL_OBS_SETS,
+    ],
+    [ViewType.DESCRIPTION]: [
+        CoordinationType.DATASET,
+        CoordinationType.SPATIAL_IMAGE_LAYER,
+    ],
+    higlass: [
+        CoordinationType.DATASET,
+        CoordinationType.GENOMIC_ZOOM_X,
+        CoordinationType.GENOMIC_ZOOM_Y,
+        CoordinationType.GENOMIC_TARGET_X,
+        CoordinationType.GENOMIC_TARGET_Y,
+        CoordinationType.FEATURE_FILTER,
+        CoordinationType.FEATURE_HIGHLIGHT,
+        CoordinationType.FEATURE_SELECTION,
+    ],
+};

package/dist-tsc/index.d.ts

@@ -0,0 +1,4 @@
+export { ViewType, DataType, FileType, CoordinationType, STATUS } from "./constants.js";
+export { FILE_TYPE_DATA_TYPE_MAPPING, DATA_TYPE_COORDINATION_VALUE_USAGE } from "./constant-relationships.js";
+export { AUTO_INDEPENDENT_COORDINATION_TYPES, COMPONENT_COORDINATION_TYPES } from "./coordination.js";
+//# sourceMappingURL=index.d.ts.map

package/dist-tsc/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.js"],"names":[],"mappings":""}

package/dist-tsc/index.js

@@ -1,4 +1,4 @@
-export { ViewType, DataType, FileType, CoordinationType, STATUS, } from './constants';
-export { FILE_TYPE_DATA_TYPE_MAPPING, DATA_TYPE_COORDINATION_VALUE_USAGE } from './constant-relationships';
-export { DEFAULT_COORDINATION_VALUES, AUTO_INDEPENDENT_COORDINATION_TYPES, COMPONENT_COORDINATION_TYPES } from './coordination';
+export { ViewType, DataType, FileType, CoordinationType, STATUS, } from './constants.js';
+export { FILE_TYPE_DATA_TYPE_MAPPING, DATA_TYPE_COORDINATION_VALUE_USAGE } from './constant-relationships.js';
+export { AUTO_INDEPENDENT_COORDINATION_TYPES, COMPONENT_COORDINATION_TYPES } from './coordination.js';
 export { default as META_VERSION } from './version.json';

package/dist-tsc/version.json

@@ -0,0 +1,7 @@
+{
+    "note": "This file is regenerated by push-demo.sh.",
+    "version": "3.0.0",
+    "branch": "release-v3.0.0",
+    "date": "2023-06-05",
+    "hash": "74d01aab"
+}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/constants-internal",
-  "version": "2.0.3",
+  "version": "3.0.0",
   "author": "Gehlenborg Lab",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -8,17 +8,26 @@
     "url": "git+https://github.com/vitessce/vitessce.git"
   },
   "license": "MIT",
-  "main": "dist/index.mjs",
+  "type": "module",
+  "main": "dist/index.js",
   "files": [
+    "src",
     "dist",
-    "src"
+    "dist-tsc"
   ],
   "devDependencies": {
-    "vite": "^3.0.0",
+    "vite": "^4.3.0",
     "vitest": "^0.23.4"
   },
   "scripts": {
     "bundle": "pnpm exec vite build -c ../../scripts/vite.config.js",
     "test": "pnpm exec vitest --run -r ../../ --dir ."
+  },
+  "module": "dist/index.js",
+  "exports": {
+    ".": {
+      "types": "./dist-tsc/index.d.ts",
+      "import": "./dist/index.js"
+    }
   }
 }

package/src/constant-relationships.js

@@ -1,4 +1,4 @@
-import { FileType, DataType, CoordinationType } from './constants';
+import { FileType, DataType, CoordinationType } from './constants.js';
 
 /**
  * Mapping from file types to data types. Each file type
@@ -23,6 +23,8 @@ export const FILE_TYPE_DATA_TYPE_MAPPING = {
   [FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
   [FileType.OBS_LABELS_ANNDATA_ZARR]: DataType.OBS_LABELS,
   [FileType.FEATURE_LABELS_ANNDATA_ZARR]: DataType.FEATURE_LABELS,
+  [FileType.IMAGE_OME_TIFF]: DataType.IMAGE,
+  [FileType.OBS_SEGMENTATIONS_OME_TIFF]: DataType.OBS_SEGMENTATIONS,
   [FileType.OBS_FEATURE_MATRIX_MUDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
   [FileType.OBS_SETS_MUDATA_ZARR]: DataType.OBS_SETS,
   [FileType.OBS_EMBEDDING_MUDATA_ZARR]: DataType.OBS_EMBEDDING,

package/src/constant-relationships.test.js

@@ -1,7 +1,7 @@
-import { DataType } from './constants';
+import { DataType } from './constants.js';
 import {
   DATA_TYPE_COORDINATION_VALUE_USAGE,
-} from './constant-relationships';
+} from './constant-relationships.js';
 
 describe('src/app/constant-relationships.js', () => {
   describe('DataType-to-CoordinationType usage mapping', () => {

package/src/constants.js

@@ -64,6 +64,9 @@ export const FileType = {
   FEATURE_LABELS_MUDATA_ZARR: 'featureLabels.mudata.zarr',
   GENOMIC_PROFILES_ZARR: 'genomic-profiles.zarr',
   NEIGHBORHOODS_JSON: 'neighborhoods.json',
+  // OME-TIFF
+  IMAGE_OME_TIFF: 'image.ome-tiff',
+  OBS_SEGMENTATIONS_OME_TIFF: 'obsSegmentations.ome-tiff',
   // New file types to support old file types:
   // - cells.json
   OBS_EMBEDDING_CELLS_JSON: 'obsEmbedding.cells.json',
@@ -142,6 +145,7 @@ export const CoordinationType = {
   OBS_HIGHLIGHT: 'obsHighlight',
   OBS_SET_SELECTION: 'obsSetSelection',
   OBS_SET_HIGHLIGHT: 'obsSetHighlight',
+  OBS_SET_EXPANSION: 'obsSetExpansion',
   OBS_SET_COLOR: 'obsSetColor',
   FEATURE_FILTER: 'featureFilter',
   FEATURE_HIGHLIGHT: 'featureHighlight',
@@ -164,6 +168,7 @@ export const CoordinationType = {
   GATING_FEATURE_SELECTION_X: 'gatingFeatureSelectionX',
   GATING_FEATURE_SELECTION_Y: 'gatingFeatureSelectionY',
   FEATURE_VALUE_TRANSFORM_COEFFICIENT: 'featureValueTransformCoefficient',
+  TOOLTIPS_VISIBLE: 'tooltipsVisible',
 };
 
 export const STATUS = {

package/src/coordination.js

@@ -1,68 +1,4 @@
-import { CoordinationType, ViewType } from './constants';
-
-/**
- * Coordination types may have default values,
- * which can be defined here, and used by the
- * auto initialization strategy.
- */
-export const DEFAULT_COORDINATION_VALUES = {
-  [CoordinationType.OBS_TYPE]: 'cell',
-  [CoordinationType.FEATURE_TYPE]: 'gene',
-  [CoordinationType.FEATURE_VALUE_TYPE]: 'expression',
-  [CoordinationType.OBS_LABELS_TYPE]: null,
-  [CoordinationType.EMBEDDING_ZOOM]: null,
-  [CoordinationType.EMBEDDING_ROTATION]: 0,
-  [CoordinationType.EMBEDDING_TARGET_X]: null,
-  [CoordinationType.EMBEDDING_TARGET_Y]: null,
-  [CoordinationType.EMBEDDING_TARGET_Z]: 0,
-  [CoordinationType.EMBEDDING_OBS_SET_POLYGONS_VISIBLE]: false,
-  [CoordinationType.EMBEDDING_OBS_SET_LABELS_VISIBLE]: false,
-  [CoordinationType.EMBEDDING_OBS_SET_LABEL_SIZE]: 14,
-  [CoordinationType.EMBEDDING_OBS_RADIUS]: 1,
-  [CoordinationType.EMBEDDING_OBS_RADIUS_MODE]: 'auto',
-  [CoordinationType.EMBEDDING_OBS_OPACITY]: 1,
-  [CoordinationType.EMBEDDING_OBS_OPACITY_MODE]: 'auto',
-  [CoordinationType.SPATIAL_ZOOM]: null,
-  [CoordinationType.SPATIAL_ROTATION]: 0,
-  [CoordinationType.SPATIAL_TARGET_X]: null,
-  [CoordinationType.SPATIAL_TARGET_Y]: null,
-  [CoordinationType.SPATIAL_TARGET_Z]: null,
-  [CoordinationType.SPATIAL_ROTATION_X]: null,
-  [CoordinationType.SPATIAL_ROTATION_Y]: null,
-  [CoordinationType.SPATIAL_ROTATION_Z]: null,
-  [CoordinationType.SPATIAL_AXIS_FIXED]: false,
-  [CoordinationType.SPATIAL_ROTATION_ORBIT]: 0,
-  [CoordinationType.SPATIAL_ORBIT_AXIS]: 'Y',
-  [CoordinationType.SPATIAL_IMAGE_LAYER]: null,
-  [CoordinationType.SPATIAL_SEGMENTATION_LAYER]: null,
-  [CoordinationType.SPATIAL_POINT_LAYER]: null,
-  [CoordinationType.SPATIAL_NEIGHBORHOOD_LAYER]: null,
-  [CoordinationType.HEATMAP_ZOOM_X]: 0,
-  [CoordinationType.HEATMAP_ZOOM_Y]: 0,
-  [CoordinationType.HEATMAP_TARGET_X]: 0,
-  [CoordinationType.HEATMAP_TARGET_Y]: 0,
-  [CoordinationType.FEATURE_VALUE_COLORMAP]: 'plasma',
-  [CoordinationType.FEATURE_VALUE_COLORMAP_RANGE]: [0.0, 1.0],
-  [CoordinationType.FEATURE_VALUE_TRANSFORM]: null,
-  [CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT]: 1,
-  [CoordinationType.FEATURE_FILTER]: null,
-  [CoordinationType.FEATURE_HIGHLIGHT]: null,
-  [CoordinationType.FEATURE_SELECTION]: null,
-  [CoordinationType.OBS_FILTER]: null,
-  [CoordinationType.OBS_HIGHLIGHT]: null,
-  [CoordinationType.OBS_SET_SELECTION]: null,
-  [CoordinationType.OBS_SET_HIGHLIGHT]: null,
-  [CoordinationType.OBS_SET_COLOR]: null,
-  [CoordinationType.OBS_COLOR_ENCODING]: 'cellSetSelection',
-  [CoordinationType.GENOMIC_ZOOM_X]: 0,
-  [CoordinationType.GENOMIC_ZOOM_Y]: 0,
-  [CoordinationType.GENOMIC_TARGET_X]: 1549999999.5,
-  [CoordinationType.GENOMIC_TARGET_Y]: 1549999999.5,
-  [CoordinationType.ADDITIONAL_OBS_SETS]: null,
-  [CoordinationType.MOLECULE_HIGHLIGHT]: null,
-  [CoordinationType.GATING_FEATURE_SELECTION_X]: null,
-  [CoordinationType.GATING_FEATURE_SELECTION_Y]: null,
-};
+import { CoordinationType, ViewType } from './constants.js';
 
 // The following coordination types should be
 // initialized to independent scopes when
@@ -70,6 +6,7 @@ export const DEFAULT_COORDINATION_VALUES = {
 // These make the resulting view config
 // (after auto-initialization) behave
 // like "legacy" Vitessce (pre-coordination model).
+// TODO: delegate to PluginCoordinationType class
 export const AUTO_INDEPENDENT_COORDINATION_TYPES = [
   CoordinationType.HEATMAP_ZOOM_X,
   CoordinationType.HEATMAP_ZOOM_Y,
@@ -125,6 +62,7 @@ export const COMPONENT_COORDINATION_TYPES = {
     CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
     CoordinationType.OBS_COLOR_ENCODING,
     CoordinationType.ADDITIONAL_OBS_SETS,
+    CoordinationType.TOOLTIPS_VISIBLE,
   ],
   [ViewType.GATING]: [
     CoordinationType.DATASET,
@@ -193,6 +131,7 @@ export const COMPONENT_COORDINATION_TYPES = {
     CoordinationType.OBS_COLOR_ENCODING,
     CoordinationType.ADDITIONAL_OBS_SETS,
     CoordinationType.MOLECULE_HIGHLIGHT,
+    CoordinationType.TOOLTIPS_VISIBLE,
   ],
   [ViewType.HEATMAP]: [
     CoordinationType.DATASET,
@@ -216,11 +155,13 @@ export const COMPONENT_COORDINATION_TYPES = {
     CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
     CoordinationType.OBS_COLOR_ENCODING,
     CoordinationType.ADDITIONAL_OBS_SETS,
+    CoordinationType.TOOLTIPS_VISIBLE,
   ],
   [ViewType.OBS_SETS]: [
     CoordinationType.DATASET,
     CoordinationType.OBS_TYPE,
     CoordinationType.OBS_SET_SELECTION,
+    CoordinationType.OBS_SET_EXPANSION,
     CoordinationType.OBS_SET_HIGHLIGHT,
     CoordinationType.OBS_SET_COLOR,
     CoordinationType.OBS_COLOR_ENCODING,
@@ -231,6 +172,7 @@ export const COMPONENT_COORDINATION_TYPES = {
     CoordinationType.DATASET,
     CoordinationType.OBS_TYPE,
     CoordinationType.OBS_SET_SELECTION,
+    CoordinationType.OBS_SET_EXPANSION,
     CoordinationType.OBS_SET_HIGHLIGHT,
     CoordinationType.OBS_SET_COLOR,
     CoordinationType.ADDITIONAL_OBS_SETS,
@@ -272,6 +214,10 @@ export const COMPONENT_COORDINATION_TYPES = {
     CoordinationType.FEATURE_TYPE,
     CoordinationType.FEATURE_VALUE_TYPE,
     CoordinationType.FEATURE_SELECTION,
+    CoordinationType.ADDITIONAL_OBS_SETS,
+    CoordinationType.OBS_SET_COLOR,
+    CoordinationType.OBS_COLOR_ENCODING,
+    CoordinationType.OBS_SET_SELECTION,
   ],
   [ViewType.LAYER_CONTROLLER]: [
     CoordinationType.DATASET,

package/src/index.js

@@ -1,6 +1,6 @@
 export {
   ViewType, DataType, FileType, CoordinationType, STATUS,
-} from './constants';
-export { FILE_TYPE_DATA_TYPE_MAPPING, DATA_TYPE_COORDINATION_VALUE_USAGE } from './constant-relationships';
-export { DEFAULT_COORDINATION_VALUES, AUTO_INDEPENDENT_COORDINATION_TYPES, COMPONENT_COORDINATION_TYPES } from './coordination';
+} from './constants.js';
+export { FILE_TYPE_DATA_TYPE_MAPPING, DATA_TYPE_COORDINATION_VALUE_USAGE } from './constant-relationships.js';
+export { AUTO_INDEPENDENT_COORDINATION_TYPES, COMPONENT_COORDINATION_TYPES } from './coordination.js';
 export { default as META_VERSION } from './version.json';

package/src/version.json

@@ -1,7 +1,7 @@
 {
   "note": "This file is regenerated by push-demo.sh.",
-  "version": "2.0.3",
-  "branch": "release-v2.0.3",
-  "date": "2023-02-07",
-  "hash": "ca9494c3"
+  "version": "3.0.0",
+  "branch": "release-v3.0.0",
+  "date": "2023-06-05",
+  "hash": "74d01aab"
 }