@vitessce/constants-internal 2.0.0-beta.0

package/LICENSE

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+MIT License
+
+Copyright (c) 2018 
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

package/dist/constant-relationships.js

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+import { FileType, DataType, CoordinationType } from './constants';
+/**
+ * Mapping from file types to data types. Each file type
+ * should correspond to one data type. Multiple file types
+ * can map onto the same data type.
+ */
+export const FILE_TYPE_DATA_TYPE_MAPPING = {
+    // For new file types
+    [FileType.OBS_EMBEDDING_CSV]: DataType.OBS_EMBEDDING,
+    [FileType.OBS_LOCATIONS_CSV]: DataType.OBS_LOCATIONS,
+    [FileType.OBS_LABELS_CSV]: DataType.OBS_LABELS,
+    [FileType.FEATURE_LABELS_CSV]: DataType.FEATURE_LABELS,
+    [FileType.OBS_FEATURE_MATRIX_CSV]: DataType.OBS_FEATURE_MATRIX,
+    [FileType.OBS_SEGMENTATIONS_JSON]: DataType.OBS_SEGMENTATIONS,
+    [FileType.OBS_SETS_CSV]: DataType.OBS_SETS,
+    [FileType.OBS_SETS_JSON]: DataType.OBS_SETS,
+    [FileType.IMAGE_OME_ZARR]: DataType.IMAGE,
+    [FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR]: DataType.OBS_FEATURE_MATRIX,
+    [FileType.OBS_SETS_ANNDATA_ZARR]: DataType.OBS_SETS,
+    [FileType.OBS_EMBEDDING_ANNDATA_ZARR]: DataType.OBS_EMBEDDING,
+    [FileType.OBS_LOCATIONS_ANNDATA_ZARR]: DataType.OBS_LOCATIONS,
+    [FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR]: DataType.OBS_SEGMENTATIONS,
+    [FileType.OBS_LABELS_ANNDATA_ZARR]: DataType.OBS_LABELS,
+    [FileType.FEATURE_LABELS_ANNDATA_ZARR]: DataType.FEATURE_LABELS,
+    // For new file types to support old file types
+    [FileType.OBS_EMBEDDING_CELLS_JSON]: DataType.OBS_EMBEDDING,
+    [FileType.OBS_LOCATIONS_CELLS_JSON]: DataType.OBS_LOCATIONS,
+    [FileType.OBS_SEGMENTATIONS_CELLS_JSON]: DataType.OBS_SEGMENTATIONS,
+    [FileType.OBS_LABELS_CELLS_JSON]: DataType.OBS_LABELS,
+    [FileType.OBS_SETS_CELL_SETS_JSON]: DataType.OBS_SETS,
+    [FileType.OBS_FEATURE_MATRIX_GENES_JSON]: DataType.OBS_FEATURE_MATRIX,
+    [FileType.OBS_FEATURE_MATRIX_CLUSTERS_JSON]: DataType.OBS_FEATURE_MATRIX,
+    [FileType.OBS_FEATURE_MATRIX_EXPRESSION_MATRIX_ZARR]: DataType.OBS_FEATURE_MATRIX,
+    [FileType.IMAGE_RASTER_JSON]: DataType.IMAGE,
+    [FileType.OBS_SEGMENTATIONS_RASTER_JSON]: DataType.OBS_SEGMENTATIONS,
+    [FileType.OBS_LOCATIONS_MOLECULES_JSON]: DataType.OBS_LOCATIONS,
+    [FileType.OBS_LABELS_MOLECULES_JSON]: DataType.OBS_LABELS,
+    // For old file types
+    [FileType.GENOMIC_PROFILES_ZARR]: DataType.GENOMIC_PROFILES,
+    [FileType.NEIGHBORHOODS_JSON]: DataType.NEIGHBORHOODS,
+};
+/**
+ * Store a mapping from data types to the coordination types used
+ * for matching using the coordinationValues field of file definitions.
+ * This enables inferring default values, simplifying view config writing.
+ */
+export const DATA_TYPE_COORDINATION_VALUE_USAGE = {
+    [DataType.OBS_SEGMENTATIONS]: [
+        CoordinationType.OBS_TYPE,
+    ],
+    [DataType.OBS_EMBEDDING]: [
+        CoordinationType.OBS_TYPE,
+        CoordinationType.EMBEDDING_TYPE,
+    ],
+    [DataType.OBS_LOCATIONS]: [
+        CoordinationType.OBS_TYPE,
+    ],
+    [DataType.OBS_LABELS]: [
+        CoordinationType.OBS_TYPE,
+        CoordinationType.OBS_LABELS_TYPE,
+    ],
+    [DataType.FEATURE_LABELS]: [
+        CoordinationType.FEATURE_TYPE,
+    ],
+    [DataType.OBS_SETS]: [
+        CoordinationType.OBS_TYPE,
+    ],
+    [DataType.OBS_FEATURE_MATRIX]: [
+        CoordinationType.OBS_TYPE,
+        CoordinationType.FEATURE_TYPE,
+        CoordinationType.FEATURE_VALUE_TYPE,
+    ],
+    [DataType.GENOMIC_PROFILES]: [],
+    [DataType.IMAGE]: [],
+    [DataType.NEIGHBORHOODS]: [],
+};

package/dist/constant-relationships.test.js

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+import { DataType } from './constants';
+import { DATA_TYPE_COORDINATION_VALUE_USAGE, } from './constant-relationships';
+describe('src/app/constant-relationships.js', () => {
+    describe('DataType-to-CoordinationType usage mapping', () => {
+        it('every data type is mapped to an array of coordination types', () => {
+            const dataTypes = Object.values(DataType).sort();
+            const mappedDataTypes = Object.keys(DATA_TYPE_COORDINATION_VALUE_USAGE).sort();
+            expect(dataTypes.length).toEqual(mappedDataTypes.length);
+        });
+    });
+});

package/dist/constants.js

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+/**
+ * This file defines the current constant values.
+ * To deprecate a value, add it to ./constants-old.js
+ * with a corresponding log message.
+ */
+export const ViewType = {
+    DESCRIPTION: 'description',
+    STATUS: 'status',
+    SCATTERPLOT: 'scatterplot',
+    SPATIAL: 'spatial',
+    HEATMAP: 'heatmap',
+    LAYER_CONTROLLER: 'layerController',
+    GENOMIC_PROFILES: 'genomicProfiles',
+    GATING: 'gating',
+    FEATURE_LIST: 'featureList',
+    OBS_SETS: 'obsSets',
+    OBS_SET_SIZES: 'obsSetSizes',
+    OBS_SET_FEATURE_VALUE_DISTRIBUTION: 'obsSetFeatureValueDistribution',
+    FEATURE_VALUE_HISTOGRAM: 'featureValueHistogram',
+};
+export const DataType = {
+    OBS_LABELS: 'obsLabels',
+    OBS_EMBEDDING: 'obsEmbedding',
+    OBS_LOCATIONS: 'obsLocations',
+    OBS_FEATURE_MATRIX: 'obsFeatureMatrix',
+    OBS_SETS: 'obsSets',
+    FEATURE_LABELS: 'featureLabels',
+    IMAGE: 'image',
+    OBS_SEGMENTATIONS: 'obsSegmentations',
+    NEIGHBORHOODS: 'neighborhoods',
+    GENOMIC_PROFILES: 'genomic-profiles',
+};
+export const FileType = {
+    // Joint file types
+    ANNDATA_ZARR: 'anndata.zarr',
+    // Atomic file types
+    OBS_EMBEDDING_CSV: 'obsEmbedding.csv',
+    OBS_LOCATIONS_CSV: 'obsLocations.csv',
+    OBS_LABELS_CSV: 'obsLabels.csv',
+    FEATURE_LABELS_CSV: 'featureLabels.csv',
+    OBS_FEATURE_MATRIX_CSV: 'obsFeatureMatrix.csv',
+    OBS_SEGMENTATIONS_JSON: 'obsSegmentations.json',
+    OBS_SETS_CSV: 'obsSets.csv',
+    OBS_SETS_JSON: 'obsSets.json',
+    IMAGE_OME_ZARR: 'image.ome-zarr',
+    OBS_FEATURE_MATRIX_ANNDATA_ZARR: 'obsFeatureMatrix.anndata.zarr',
+    OBS_SETS_ANNDATA_ZARR: 'obsSets.anndata.zarr',
+    OBS_EMBEDDING_ANNDATA_ZARR: 'obsEmbedding.anndata.zarr',
+    OBS_LOCATIONS_ANNDATA_ZARR: 'obsLocations.anndata.zarr',
+    OBS_SEGMENTATIONS_ANNDATA_ZARR: 'obsSegmentations.anndata.zarr',
+    OBS_LABELS_ANNDATA_ZARR: 'obsLabels.anndata.zarr',
+    FEATURE_LABELS_ANNDATA_ZARR: 'featureLabels.anndata.zarr',
+    GENOMIC_PROFILES_ZARR: 'genomic-profiles.zarr',
+    NEIGHBORHOODS_JSON: 'neighborhoods.json',
+    // New file types to support old file types:
+    // - cells.json
+    OBS_EMBEDDING_CELLS_JSON: 'obsEmbedding.cells.json',
+    OBS_SEGMENTATIONS_CELLS_JSON: 'obsSegmentations.cells.json',
+    OBS_LOCATIONS_CELLS_JSON: 'obsLocations.cells.json',
+    OBS_LABELS_CELLS_JSON: 'obsLabels.cells.json',
+    // - cell-sets.json
+    OBS_SETS_CELL_SETS_JSON: 'obsSets.cell-sets.json',
+    // - genes.json
+    OBS_FEATURE_MATRIX_GENES_JSON: 'obsFeatureMatrix.genes.json',
+    // - clusters.json
+    OBS_FEATURE_MATRIX_CLUSTERS_JSON: 'obsFeatureMatrix.clusters.json',
+    // - expression-matrix.zarr
+    OBS_FEATURE_MATRIX_EXPRESSION_MATRIX_ZARR: 'obsFeatureMatrix.expression-matrix.zarr',
+    // - raster.json
+    IMAGE_RASTER_JSON: 'image.raster.json',
+    OBS_SEGMENTATIONS_RASTER_JSON: 'obsSegmentations.raster.json',
+    // - molecules.json
+    OBS_LOCATIONS_MOLECULES_JSON: 'obsLocations.molecules.json',
+    OBS_LABELS_MOLECULES_JSON: 'obsLabels.molecules.json',
+    // Legacy joint file types
+    CELLS_JSON: 'cells.json',
+    CELL_SETS_JSON: 'cell-sets.json',
+    ANNDATA_CELL_SETS_ZARR: 'anndata-cell-sets.zarr',
+    ANNDATA_CELLS_ZARR: 'anndata-cells.zarr',
+    EXPRESSION_MATRIX_ZARR: 'expression-matrix.zarr',
+    MOLECULES_JSON: 'molecules.json',
+    RASTER_JSON: 'raster.json',
+    RASTER_OME_ZARR: 'raster.ome-zarr',
+    CLUSTERS_JSON: 'clusters.json',
+    GENES_JSON: 'genes.json',
+    ANNDATA_EXPRESSION_MATRIX_ZARR: 'anndata-expression-matrix.zarr',
+};
+/**
+ * Constants representing names of coordination types,
+ * to help prevent typos.
+ */
+export const CoordinationType = {
+    DATASET: 'dataset',
+    // Entity types
+    OBS_TYPE: 'obsType',
+    FEATURE_TYPE: 'featureType',
+    FEATURE_VALUE_TYPE: 'featureValueType',
+    OBS_LABELS_TYPE: 'obsLabelsType',
+    // Other types
+    EMBEDDING_TYPE: 'embeddingType',
+    EMBEDDING_ZOOM: 'embeddingZoom',
+    EMBEDDING_ROTATION: 'embeddingRotation',
+    EMBEDDING_TARGET_X: 'embeddingTargetX',
+    EMBEDDING_TARGET_Y: 'embeddingTargetY',
+    EMBEDDING_TARGET_Z: 'embeddingTargetZ',
+    EMBEDDING_OBS_SET_POLYGONS_VISIBLE: 'embeddingObsSetPolygonsVisible',
+    EMBEDDING_OBS_SET_LABELS_VISIBLE: 'embeddingObsSetLabelsVisible',
+    EMBEDDING_OBS_SET_LABEL_SIZE: 'embeddingObsSetLabelSize',
+    EMBEDDING_OBS_RADIUS: 'embeddingObsRadius',
+    EMBEDDING_OBS_RADIUS_MODE: 'embeddingObsRadiusMode',
+    EMBEDDING_OBS_OPACITY: 'embeddingObsOpacity',
+    EMBEDDING_OBS_OPACITY_MODE: 'embeddingObsOpacityMode',
+    SPATIAL_ZOOM: 'spatialZoom',
+    SPATIAL_ROTATION: 'spatialRotation',
+    SPATIAL_TARGET_X: 'spatialTargetX',
+    SPATIAL_TARGET_Y: 'spatialTargetY',
+    SPATIAL_TARGET_Z: 'spatialTargetZ',
+    SPATIAL_ROTATION_X: 'spatialRotationX',
+    SPATIAL_ROTATION_Y: 'spatialRotationY',
+    SPATIAL_ROTATION_Z: 'spatialRotationZ',
+    SPATIAL_ROTATION_ORBIT: 'spatialRotationOrbit',
+    SPATIAL_ORBIT_AXIS: 'spatialOrbitAxis',
+    SPATIAL_AXIS_FIXED: 'spatialAxisFixed',
+    HEATMAP_ZOOM_X: 'heatmapZoomX',
+    HEATMAP_ZOOM_Y: 'heatmapZoomY',
+    HEATMAP_TARGET_X: 'heatmapTargetX',
+    HEATMAP_TARGET_Y: 'heatmapTargetY',
+    OBS_FILTER: 'obsFilter',
+    OBS_HIGHLIGHT: 'obsHighlight',
+    OBS_SET_SELECTION: 'obsSetSelection',
+    OBS_SET_HIGHLIGHT: 'obsSetHighlight',
+    OBS_SET_COLOR: 'obsSetColor',
+    FEATURE_FILTER: 'featureFilter',
+    FEATURE_HIGHLIGHT: 'featureHighlight',
+    FEATURE_SELECTION: 'featureSelection',
+    FEATURE_VALUE_COLORMAP: 'featureValueColormap',
+    FEATURE_VALUE_TRANSFORM: 'featureValueTransform',
+    FEATURE_VALUE_COLORMAP_RANGE: 'featureValueColormapRange',
+    OBS_COLOR_ENCODING: 'obsColorEncoding',
+    SPATIAL_IMAGE_LAYER: 'spatialImageLayer',
+    SPATIAL_SEGMENTATION_LAYER: 'spatialSegmentationLayer',
+    SPATIAL_POINT_LAYER: 'spatialPointLayer',
+    SPATIAL_NEIGHBORHOOD_LAYER: 'spatialNeighborhoodLayer',
+    GENOMIC_ZOOM_X: 'genomicZoomX',
+    GENOMIC_ZOOM_Y: 'genomicZoomY',
+    GENOMIC_TARGET_X: 'genomicTargetX',
+    GENOMIC_TARGET_Y: 'genomicTargetY',
+    ADDITIONAL_OBS_SETS: 'additionalObsSets',
+    // TODO: use obsHighlight rather than moleculeHighlight.
+    MOLECULE_HIGHLIGHT: 'moleculeHighlight',
+    GATING_FEATURE_SELECTION_X: 'gatingFeatureSelectionX',
+    GATING_FEATURE_SELECTION_Y: 'gatingFeatureSelectionY',
+    FEATURE_VALUE_TRANSFORM_COEFFICIENT: 'featureValueTransformCoefficient',
+};
+export const STATUS = {
+    LOADING: 'loading',
+    SUCCESS: 'success',
+    ERROR: 'error',
+};

package/dist/coordination.js

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+import { CoordinationType, ViewType } from './constants';
+/**
+ * Coordination types may have default values,
+ * which can be defined here, and used by the
+ * auto initialization strategy.
+ */
+export const DEFAULT_COORDINATION_VALUES = {
+    [CoordinationType.OBS_TYPE]: 'cell',
+    [CoordinationType.FEATURE_TYPE]: 'gene',
+    [CoordinationType.FEATURE_VALUE_TYPE]: 'expression',
+    [CoordinationType.OBS_LABELS_TYPE]: null,
+    [CoordinationType.EMBEDDING_ZOOM]: null,
+    [CoordinationType.EMBEDDING_ROTATION]: 0,
+    [CoordinationType.EMBEDDING_TARGET_X]: null,
+    [CoordinationType.EMBEDDING_TARGET_Y]: null,
+    [CoordinationType.EMBEDDING_TARGET_Z]: 0,
+    [CoordinationType.EMBEDDING_OBS_SET_POLYGONS_VISIBLE]: false,
+    [CoordinationType.EMBEDDING_OBS_SET_LABELS_VISIBLE]: false,
+    [CoordinationType.EMBEDDING_OBS_SET_LABEL_SIZE]: 14,
+    [CoordinationType.EMBEDDING_OBS_RADIUS]: 1,
+    [CoordinationType.EMBEDDING_OBS_RADIUS_MODE]: 'auto',
+    [CoordinationType.EMBEDDING_OBS_OPACITY]: 1,
+    [CoordinationType.EMBEDDING_OBS_OPACITY_MODE]: 'auto',
+    [CoordinationType.SPATIAL_ZOOM]: null,
+    [CoordinationType.SPATIAL_ROTATION]: 0,
+    [CoordinationType.SPATIAL_TARGET_X]: null,
+    [CoordinationType.SPATIAL_TARGET_Y]: null,
+    [CoordinationType.SPATIAL_TARGET_Z]: null,
+    [CoordinationType.SPATIAL_ROTATION_X]: null,
+    [CoordinationType.SPATIAL_ROTATION_Y]: null,
+    [CoordinationType.SPATIAL_ROTATION_Z]: null,
+    [CoordinationType.SPATIAL_AXIS_FIXED]: false,
+    [CoordinationType.SPATIAL_ROTATION_ORBIT]: 0,
+    [CoordinationType.SPATIAL_ORBIT_AXIS]: 'Y',
+    [CoordinationType.SPATIAL_IMAGE_LAYER]: null,
+    [CoordinationType.SPATIAL_SEGMENTATION_LAYER]: null,
+    [CoordinationType.SPATIAL_POINT_LAYER]: null,
+    [CoordinationType.SPATIAL_NEIGHBORHOOD_LAYER]: null,
+    [CoordinationType.HEATMAP_ZOOM_X]: 0,
+    [CoordinationType.HEATMAP_ZOOM_Y]: 0,
+    [CoordinationType.HEATMAP_TARGET_X]: 0,
+    [CoordinationType.HEATMAP_TARGET_Y]: 0,
+    [CoordinationType.FEATURE_VALUE_COLORMAP]: 'plasma',
+    [CoordinationType.FEATURE_VALUE_COLORMAP_RANGE]: [0.0, 1.0],
+    [CoordinationType.FEATURE_VALUE_TRANSFORM]: null,
+    [CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT]: 1,
+    [CoordinationType.FEATURE_FILTER]: null,
+    [CoordinationType.FEATURE_HIGHLIGHT]: null,
+    [CoordinationType.FEATURE_SELECTION]: null,
+    [CoordinationType.OBS_FILTER]: null,
+    [CoordinationType.OBS_HIGHLIGHT]: null,
+    [CoordinationType.OBS_SET_SELECTION]: null,
+    [CoordinationType.OBS_SET_HIGHLIGHT]: null,
+    [CoordinationType.OBS_SET_COLOR]: null,
+    [CoordinationType.OBS_COLOR_ENCODING]: 'cellSetSelection',
+    [CoordinationType.GENOMIC_ZOOM_X]: 0,
+    [CoordinationType.GENOMIC_ZOOM_Y]: 0,
+    [CoordinationType.GENOMIC_TARGET_X]: 1549999999.5,
+    [CoordinationType.GENOMIC_TARGET_Y]: 1549999999.5,
+    [CoordinationType.ADDITIONAL_OBS_SETS]: null,
+    [CoordinationType.MOLECULE_HIGHLIGHT]: null,
+    [CoordinationType.GATING_FEATURE_SELECTION_X]: null,
+    [CoordinationType.GATING_FEATURE_SELECTION_Y]: null,
+};
+// The following coordination types should be
+// initialized to independent scopes when
+// initialized automatically.
+// These make the resulting view config
+// (after auto-initialization) behave
+// like "legacy" Vitessce (pre-coordination model).
+export const AUTO_INDEPENDENT_COORDINATION_TYPES = [
+    CoordinationType.HEATMAP_ZOOM_X,
+    CoordinationType.HEATMAP_ZOOM_Y,
+    CoordinationType.HEATMAP_TARGET_X,
+    CoordinationType.HEATMAP_TARGET_Y,
+    CoordinationType.EMBEDDING_ZOOM,
+    CoordinationType.EMBEDDING_TARGET_X,
+    CoordinationType.EMBEDDING_TARGET_Y,
+    CoordinationType.EMBEDDING_TARGET_Z,
+    CoordinationType.EMBEDDING_OBS_SET_POLYGONS_VISIBLE,
+    CoordinationType.EMBEDDING_OBS_SET_LABELS_VISIBLE,
+    CoordinationType.EMBEDDING_OBS_SET_LABEL_SIZE,
+    CoordinationType.EMBEDDING_OBS_RADIUS,
+    CoordinationType.EMBEDDING_OBS_OPACITY,
+];
+/**
+   * Mapping from component type to
+   * supported coordination object types.
+   * This mapping can be used to determine
+   * which pieces of state that a component will
+   * need to get/set.
+   * Keys here are the component registry keys.
+   */
+export const COMPONENT_COORDINATION_TYPES = {
+    [ViewType.SCATTERPLOT]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.FEATURE_TYPE,
+        CoordinationType.FEATURE_VALUE_TYPE,
+        CoordinationType.OBS_LABELS_TYPE,
+        CoordinationType.EMBEDDING_TYPE,
+        CoordinationType.EMBEDDING_ZOOM,
+        CoordinationType.EMBEDDING_ROTATION,
+        CoordinationType.EMBEDDING_TARGET_X,
+        CoordinationType.EMBEDDING_TARGET_Y,
+        CoordinationType.EMBEDDING_TARGET_Z,
+        CoordinationType.EMBEDDING_OBS_SET_POLYGONS_VISIBLE,
+        CoordinationType.EMBEDDING_OBS_SET_LABELS_VISIBLE,
+        CoordinationType.EMBEDDING_OBS_SET_LABEL_SIZE,
+        CoordinationType.EMBEDDING_OBS_RADIUS,
+        CoordinationType.EMBEDDING_OBS_RADIUS_MODE,
+        CoordinationType.EMBEDDING_OBS_OPACITY,
+        CoordinationType.EMBEDDING_OBS_OPACITY_MODE,
+        CoordinationType.OBS_FILTER,
+        CoordinationType.OBS_HIGHLIGHT,
+        CoordinationType.OBS_SET_SELECTION,
+        CoordinationType.OBS_SET_HIGHLIGHT,
+        CoordinationType.OBS_SET_COLOR,
+        CoordinationType.FEATURE_HIGHLIGHT,
+        CoordinationType.FEATURE_SELECTION,
+        CoordinationType.FEATURE_VALUE_COLORMAP,
+        CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
+        CoordinationType.OBS_COLOR_ENCODING,
+        CoordinationType.ADDITIONAL_OBS_SETS,
+    ],
+    [ViewType.GATING]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.FEATURE_TYPE,
+        CoordinationType.FEATURE_VALUE_TYPE,
+        CoordinationType.EMBEDDING_TYPE,
+        CoordinationType.EMBEDDING_ZOOM,
+        CoordinationType.EMBEDDING_ROTATION,
+        CoordinationType.EMBEDDING_TARGET_X,
+        CoordinationType.EMBEDDING_TARGET_Y,
+        CoordinationType.EMBEDDING_TARGET_Z,
+        CoordinationType.EMBEDDING_OBS_SET_POLYGONS_VISIBLE,
+        CoordinationType.EMBEDDING_OBS_SET_LABELS_VISIBLE,
+        CoordinationType.EMBEDDING_OBS_SET_LABEL_SIZE,
+        CoordinationType.EMBEDDING_OBS_RADIUS,
+        CoordinationType.EMBEDDING_OBS_RADIUS_MODE,
+        CoordinationType.EMBEDDING_OBS_OPACITY,
+        CoordinationType.EMBEDDING_OBS_OPACITY_MODE,
+        CoordinationType.OBS_FILTER,
+        CoordinationType.OBS_HIGHLIGHT,
+        CoordinationType.OBS_SET_SELECTION,
+        CoordinationType.OBS_SET_HIGHLIGHT,
+        CoordinationType.OBS_SET_COLOR,
+        CoordinationType.FEATURE_HIGHLIGHT,
+        CoordinationType.FEATURE_SELECTION,
+        CoordinationType.FEATURE_VALUE_COLORMAP,
+        CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
+        CoordinationType.OBS_COLOR_ENCODING,
+        CoordinationType.ADDITIONAL_OBS_SETS,
+        CoordinationType.FEATURE_VALUE_TRANSFORM,
+        CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT,
+        CoordinationType.GATING_FEATURE_SELECTION_X,
+        CoordinationType.GATING_FEATURE_SELECTION_Y,
+    ],
+    [ViewType.SPATIAL]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.OBS_LABELS_TYPE,
+        CoordinationType.FEATURE_TYPE,
+        CoordinationType.FEATURE_VALUE_TYPE,
+        CoordinationType.SPATIAL_ZOOM,
+        CoordinationType.SPATIAL_ROTATION,
+        CoordinationType.SPATIAL_IMAGE_LAYER,
+        CoordinationType.SPATIAL_SEGMENTATION_LAYER,
+        CoordinationType.SPATIAL_POINT_LAYER,
+        CoordinationType.SPATIAL_NEIGHBORHOOD_LAYER,
+        CoordinationType.SPATIAL_TARGET_X,
+        CoordinationType.SPATIAL_TARGET_Y,
+        CoordinationType.SPATIAL_TARGET_Z,
+        CoordinationType.SPATIAL_ROTATION_X,
+        CoordinationType.SPATIAL_ROTATION_Y,
+        CoordinationType.SPATIAL_ROTATION_Z,
+        CoordinationType.SPATIAL_ROTATION_ORBIT,
+        CoordinationType.SPATIAL_ORBIT_AXIS,
+        CoordinationType.SPATIAL_AXIS_FIXED,
+        CoordinationType.OBS_FILTER,
+        CoordinationType.OBS_HIGHLIGHT,
+        CoordinationType.OBS_SET_SELECTION,
+        CoordinationType.OBS_SET_HIGHLIGHT,
+        CoordinationType.OBS_SET_COLOR,
+        CoordinationType.FEATURE_HIGHLIGHT,
+        CoordinationType.FEATURE_SELECTION,
+        CoordinationType.FEATURE_VALUE_COLORMAP,
+        CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
+        CoordinationType.OBS_COLOR_ENCODING,
+        CoordinationType.ADDITIONAL_OBS_SETS,
+        CoordinationType.MOLECULE_HIGHLIGHT,
+    ],
+    [ViewType.HEATMAP]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.OBS_LABELS_TYPE,
+        CoordinationType.FEATURE_TYPE,
+        CoordinationType.FEATURE_VALUE_TYPE,
+        CoordinationType.HEATMAP_ZOOM_X,
+        CoordinationType.HEATMAP_ZOOM_Y,
+        CoordinationType.HEATMAP_TARGET_X,
+        CoordinationType.HEATMAP_TARGET_Y,
+        CoordinationType.OBS_FILTER,
+        CoordinationType.OBS_HIGHLIGHT,
+        CoordinationType.OBS_SET_SELECTION,
+        CoordinationType.OBS_SET_HIGHLIGHT,
+        CoordinationType.OBS_SET_COLOR,
+        CoordinationType.FEATURE_FILTER,
+        CoordinationType.FEATURE_HIGHLIGHT,
+        CoordinationType.FEATURE_SELECTION,
+        CoordinationType.FEATURE_VALUE_COLORMAP,
+        CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
+        CoordinationType.OBS_COLOR_ENCODING,
+        CoordinationType.ADDITIONAL_OBS_SETS,
+    ],
+    [ViewType.OBS_SETS]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.OBS_SET_SELECTION,
+        CoordinationType.OBS_SET_HIGHLIGHT,
+        CoordinationType.OBS_SET_COLOR,
+        CoordinationType.OBS_COLOR_ENCODING,
+        CoordinationType.ADDITIONAL_OBS_SETS,
+        CoordinationType.FEATURE_SELECTION,
+    ],
+    [ViewType.OBS_SET_SIZES]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.OBS_SET_SELECTION,
+        CoordinationType.OBS_SET_HIGHLIGHT,
+        CoordinationType.OBS_SET_COLOR,
+        CoordinationType.ADDITIONAL_OBS_SETS,
+    ],
+    [ViewType.STATUS]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_HIGHLIGHT,
+        CoordinationType.FEATURE_HIGHLIGHT,
+        CoordinationType.OBS_SET_HIGHLIGHT,
+        CoordinationType.MOLECULE_HIGHLIGHT,
+    ],
+    [ViewType.FEATURE_LIST]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.FEATURE_TYPE,
+        CoordinationType.FEATURE_VALUE_TYPE,
+        CoordinationType.FEATURE_FILTER,
+        CoordinationType.FEATURE_HIGHLIGHT,
+        CoordinationType.FEATURE_SELECTION,
+        CoordinationType.OBS_COLOR_ENCODING,
+        CoordinationType.OBS_SET_SELECTION,
+    ],
+    [ViewType.OBS_SET_FEATURE_VALUE_DISTRIBUTION]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.FEATURE_TYPE,
+        CoordinationType.FEATURE_VALUE_TYPE,
+        CoordinationType.FEATURE_SELECTION,
+        CoordinationType.FEATURE_VALUE_TRANSFORM,
+        CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT,
+        CoordinationType.OBS_SET_SELECTION,
+        CoordinationType.OBS_SET_HIGHLIGHT,
+        CoordinationType.OBS_SET_COLOR,
+        CoordinationType.ADDITIONAL_OBS_SETS,
+    ],
+    [ViewType.FEATURE_VALUE_HISTOGRAM]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.FEATURE_TYPE,
+        CoordinationType.FEATURE_VALUE_TYPE,
+        CoordinationType.FEATURE_SELECTION,
+    ],
+    [ViewType.LAYER_CONTROLLER]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.FEATURE_TYPE,
+        CoordinationType.FEATURE_VALUE_TYPE,
+        CoordinationType.SPATIAL_IMAGE_LAYER,
+        CoordinationType.SPATIAL_SEGMENTATION_LAYER,
+        CoordinationType.SPATIAL_POINT_LAYER,
+        CoordinationType.SPATIAL_NEIGHBORHOOD_LAYER,
+        CoordinationType.SPATIAL_ZOOM,
+        CoordinationType.SPATIAL_TARGET_X,
+        CoordinationType.SPATIAL_TARGET_Y,
+        CoordinationType.SPATIAL_TARGET_Z,
+        CoordinationType.SPATIAL_ROTATION_X,
+        CoordinationType.SPATIAL_ROTATION_Y,
+        CoordinationType.SPATIAL_ROTATION_Z,
+        CoordinationType.SPATIAL_ROTATION_ORBIT,
+        CoordinationType.SPATIAL_ORBIT_AXIS,
+    ],
+    [ViewType.GENOMIC_PROFILES]: [
+        CoordinationType.DATASET,
+        CoordinationType.OBS_TYPE,
+        CoordinationType.FEATURE_TYPE,
+        CoordinationType.FEATURE_VALUE_TYPE,
+        CoordinationType.GENOMIC_ZOOM_X,
+        CoordinationType.GENOMIC_ZOOM_Y,
+        CoordinationType.GENOMIC_TARGET_X,
+        CoordinationType.GENOMIC_TARGET_Y,
+        CoordinationType.FEATURE_FILTER,
+        CoordinationType.FEATURE_HIGHLIGHT,
+        CoordinationType.FEATURE_SELECTION,
+        CoordinationType.OBS_SET_SELECTION,
+        CoordinationType.OBS_SET_HIGHLIGHT,
+        CoordinationType.OBS_SET_COLOR,
+        CoordinationType.ADDITIONAL_OBS_SETS,
+    ],
+    [ViewType.DESCRIPTION]: [
+        CoordinationType.DATASET,
+        CoordinationType.SPATIAL_IMAGE_LAYER,
+    ],
+    higlass: [
+        CoordinationType.DATASET,
+        CoordinationType.GENOMIC_ZOOM_X,
+        CoordinationType.GENOMIC_ZOOM_Y,
+        CoordinationType.GENOMIC_TARGET_X,
+        CoordinationType.GENOMIC_TARGET_Y,
+        CoordinationType.FEATURE_FILTER,
+        CoordinationType.FEATURE_HIGHLIGHT,
+        CoordinationType.FEATURE_SELECTION,
+    ],
+};

package/dist/index.js

@@ -0,0 +1,3 @@
+export { ViewType, DataType, FileType, CoordinationType, STATUS, } from './constants';
+export { FILE_TYPE_DATA_TYPE_MAPPING, DATA_TYPE_COORDINATION_VALUE_USAGE } from './constant-relationships';
+export { DEFAULT_COORDINATION_VALUES, AUTO_INDEPENDENT_COORDINATION_TYPES, COMPONENT_COORDINATION_TYPES } from './coordination';

package/package.json

@@ -0,0 +1,24 @@
+{
+  "name": "@vitessce/constants-internal",
+  "version": "2.0.0-beta.0",
+  "author": "Gehlenborg Lab",
+  "homepage": "http://vitessce.io",
+  "repository": {
+    "type": "git",
+    "url": "git+https://github.com/vitessce/vitessce.git"
+  },
+  "license": "MIT",
+  "main": "dist/index.js",
+  "files": [
+    "dist"
+  ],
+  "devDependencies": {
+    "vite": "^3.0.0",
+    "vitest": "^0.23.4"
+  },
+  "scripts": {
+    "start": "tsc --watch",
+    "build": "tsc",
+    "test": "pnpm exec vitest --run -r ../../ --dir ."
+  }
+}