@vitessce/config 4.0.0-test.2 → 4.0.0

package/dist/index.js

@@ -10,6 +10,8 @@ const FileType = {
   // OME-Zarr - Zipped
   IMAGE_OME_ZARR_ZIP: "image.ome-zarr.zip",
   OBS_SEGMENTATIONS_OME_ZARR_ZIP: "obsSegmentations.ome-zarr.zip",
+  GENOMIC_PROFILES_ZARR: "genomic-profiles.zarr",
+  GENOMIC_PROFILES_ZARR_ZIP: "genomic-profiles.zarr.zip",
   // OME-TIFF
   IMAGE_OME_TIFF: "image.ome-tiff",
   OBS_SEGMENTATIONS_OME_TIFF: "obsSegmentations.ome-tiff",
@@ -4392,7 +4394,9 @@ const fileTypeToExtensions = {
   // TODO: how to handle h5ad-based AnnData (since needs reference JSON file).
   // Perhaps just assume one H5AD+one JSON (or .ref.json) file correspond to each other?
   [FileType.SPATIALDATA_ZARR]: [".sd.zarr", ".sdata.zarr", ".spatialdata.zarr"],
-  [FileType.SPATIALDATA_ZARR_ZIP]: [".sd.zarr.zip", ".sdata.zarr.zip", ".spatialdata.zarr.zip"]
+  [FileType.SPATIALDATA_ZARR_ZIP]: [".sd.zarr.zip", ".sdata.zarr.zip", ".spatialdata.zarr.zip"],
+  [FileType.GENOMIC_PROFILES_ZARR]: [".multivec.zarr"],
+  [FileType.GENOMIC_PROFILES_ZARR_ZIP]: [".multivec.zarr.zip"]
 };
 const fileTypeToClass = {
   // OME-TIFF
@@ -4418,7 +4422,9 @@ const ZARR_FILETYPES = [
   FileType.IMAGE_OME_ZARR,
   FileType.IMAGE_OME_ZARR_ZIP,
   FileType.OBS_SEGMENTATIONS_OME_ZARR,
-  FileType.OBS_SEGMENTATIONS_OME_ZARR_ZIP
+  FileType.OBS_SEGMENTATIONS_OME_ZARR_ZIP,
+  FileType.GENOMIC_PROFILES_ZARR,
+  FileType.GENOMIC_PROFILES_ZARR_ZIP
 ];
 function urlToFileType(url) {
   const match = Object.entries(fileTypeToExtensions).find(
@@ -4583,11 +4589,135 @@ async function generateConfig(parsedUrls, layoutOption = null) {
     stores
   };
 }
+var fetchJsonp$2 = { exports: {} };
+var fetchJsonp$1 = fetchJsonp$2.exports;
+var hasRequiredFetchJsonp;
+function requireFetchJsonp() {
+  if (hasRequiredFetchJsonp) return fetchJsonp$2.exports;
+  hasRequiredFetchJsonp = 1;
+  (function(module2, exports) {
+    (function(global, factory) {
+      {
+        factory(exports, module2);
+      }
+    })(fetchJsonp$1, function(exports2, module3) {
+      var defaultOptions = {
+        timeout: 5e3,
+        jsonpCallback: "callback"
+      };
+      function generateCallbackFunction() {
+        return "jsonp_" + Date.now() + "_" + Math.ceil(Math.random() * 1e5);
+      }
+      function clearFunction(functionName) {
+        try {
+          delete window[functionName];
+        } catch (e) {
+          window[functionName] = void 0;
+        }
+      }
+      function removeScript(scriptId) {
+        var script = document.getElementById(scriptId);
+        if (script) {
+          document.getElementsByTagName("head")[0].removeChild(script);
+        }
+      }
+      function fetchJsonp2(_url) {
+        var options = arguments.length <= 1 || arguments[1] === void 0 ? {} : arguments[1];
+        var url = _url;
+        var timeout = options.timeout || defaultOptions.timeout;
+        var jsonpCallback = options.jsonpCallback || defaultOptions.jsonpCallback;
+        var timeoutId = void 0;
+        return new Promise(function(resolve2, reject) {
+          var callbackFunction = options.jsonpCallbackFunction || generateCallbackFunction();
+          var scriptId = jsonpCallback + "_" + callbackFunction;
+          window[callbackFunction] = function(response) {
+            resolve2({
+              ok: true,
+              // keep consistent with fetch API
+              json: function json() {
+                return Promise.resolve(response);
+              }
+            });
+            if (timeoutId) clearTimeout(timeoutId);
+            removeScript(scriptId);
+            clearFunction(callbackFunction);
+          };
+          url += url.indexOf("?") === -1 ? "?" : "&";
+          var jsonpScript = document.createElement("script");
+          jsonpScript.setAttribute("src", "" + url + jsonpCallback + "=" + callbackFunction);
+          if (options.charset) {
+            jsonpScript.setAttribute("charset", options.charset);
+          }
+          if (options.nonce) {
+            jsonpScript.setAttribute("nonce", options.nonce);
+          }
+          if (options.referrerPolicy) {
+            jsonpScript.setAttribute("referrerPolicy", options.referrerPolicy);
+          }
+          if (options.crossorigin) {
+            jsonpScript.setAttribute("crossorigin", typeof options.crossorigin === "string" ? options.crossorigin : "anonymous");
+          }
+          var fp = options.fetchPriority;
+          if (fp === "high" || fp === "low" || fp === "auto") {
+            jsonpScript.setAttribute("fetchPriority", fp);
+          }
+          jsonpScript.id = scriptId;
+          document.getElementsByTagName("head")[0].appendChild(jsonpScript);
+          timeoutId = setTimeout(function() {
+            reject(new Error("JSONP request to " + _url + " timed out"));
+            clearFunction(callbackFunction);
+            removeScript(scriptId);
+            window[callbackFunction] = function() {
+              clearFunction(callbackFunction);
+            };
+          }, timeout);
+          jsonpScript.onerror = function() {
+            reject(new Error("JSONP request to " + _url + " failed"));
+            clearFunction(callbackFunction);
+            removeScript(scriptId);
+            if (timeoutId) clearTimeout(timeoutId);
+          };
+        });
+      }
+      module3.exports = fetchJsonp2;
+    });
+  })(fetchJsonp$2, fetchJsonp$2.exports);
+  return fetchJsonp$2.exports;
+}
+var fetchJsonpExports = requireFetchJsonp();
+const fetchJsonp = /* @__PURE__ */ getDefaultExportFromCjs(fetchJsonpExports);
+async function fetchConfigFromGist(gist) {
+  let metadata = null;
+  try {
+    const response = await fetchJsonp(`https://gist.github.com/${gist}.json`);
+    metadata = await (response.ok ? response.json() : null);
+  } catch (error) {
+    return Promise.reject(new Error("Gist not found"));
+  }
+  if (!metadata) return Promise.reject(new Error("Gist not found"));
+  const dataFile = metadata.files.find((file) => file.toLowerCase().endsWith("vitessce.json"));
+  const textFile = metadata.files.find((file) => file.toLowerCase() === "readme.md");
+  if (!dataFile) return Promise.reject(new Error("Gist does not contain a Vitessce configuration."));
+  const specUrl = new URL(`https://gist.githubusercontent.com/${gist}/raw/${dataFile}`);
+  const whenCode = fetch(specUrl.href).then(
+    (response) => response.status === 200 ? response.text() : null
+  );
+  const readmeUrl = new URL(`https://gist.githubusercontent.com/${gist}/raw/${textFile}`);
+  const whenText = fetch(readmeUrl.href).then(
+    (response) => response.status === 200 ? response.text() : null
+  );
+  return Promise.all([whenCode, whenText]).then(([configContents, readmeContents]) => ({
+    title: metadata.description,
+    readmeContents,
+    configContents
+  }));
+}
 export {
   CL as CoordinationLevel,
   HINTS_CONFIG,
   HINT_TYPE_TO_FILE_TYPE_MAP,
   VitessceConfig,
+  fetchConfigFromGist,
   generateConfig$1 as generateConfig,
   generateConfig as generateConfigAlt,
   getCoordinationSpaceAndScopes,

package/dist-tsc/VitessceAutoConfig.js

@@ -553,3 +553,4 @@ export async function generateConfig(fileUrls, hintTitle = null) {
         return vc.toJSON();
     });
 }
+//# sourceMappingURL=VitessceAutoConfig.js.map

package/dist-tsc/VitessceAutoConfig.js.map

@@ -0,0 +1 @@
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package/dist-tsc/VitessceAutoConfig.test.js

@@ -968,3 +968,4 @@ describe('generateConfig', () => {
         }
     });
 });
+//# sourceMappingURL=VitessceAutoConfig.test.js.map

package/dist-tsc/VitessceAutoConfig.test.js.map

@@ -0,0 +1 @@
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package/dist-tsc/VitessceConfig.js

@@ -974,3 +974,4 @@ export function getCoordinationSpaceAndScopes(partialCoordinationValues, scopePr
         coordinationScopesBy,
     };
 }
+//# sourceMappingURL=VitessceConfig.js.map

package/dist-tsc/VitessceConfig.js.map

@@ -0,0 +1 @@
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package/dist-tsc/VitessceConfig.test.js

@@ -1058,3 +1058,4 @@ describe('src/api/VitessceConfig.js', () => {
         });
     });
 });
+//# sourceMappingURL=VitessceConfig.test.js.map

package/dist-tsc/VitessceConfig.test.js.map

@@ -0,0 +1 @@
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package/dist-tsc/constants.js

@@ -85,3 +85,4 @@ export const HINT_TYPE_TO_FILE_TYPE_MAP = {
         'Spatial transcriptomics (with histology image and polygon cell segmentations)',
     ],
 };
+//# sourceMappingURL=constants.js.map

package/dist-tsc/constants.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"constants.js","sourceRoot":"","sources":["../src/constants.js"],"names":[],"mappings":"AAAA,MAAM,8BAA8B,GAAG;IACrC,OAAO,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;IACnC,WAAW,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;IACvC,WAAW,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;IACvC,OAAO,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;IACnC,WAAW,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;CACxC,CAAC;AAEF,MAAM,iCAAiC,GAAG;IACxC,OAAO,EAAE,EAAE,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;IACpC,WAAW,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;IACvC,WAAW,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,EAAE,EAAE;IACxC,WAAW,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;CACxC,CAAC;AAEF,MAAM,6BAA6B,GAAG;IACpC,WAAW,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;IACvC,OAAO,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;IACnC,OAAO,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;IACnC,WAAW,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;IACvC,OAAO,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;IACnC,8BAA8B,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;CAC3D,CAAC;AAEF,MAAM,4CAA4C,GAAG;IACnD,OAAO,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;IACnC,OAAO,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;IACnC,eAAe,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;IAC3C,OAAO,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;IACnC,WAAW,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;CACxC,CAAC;AAEF,MAAM,WAAW,GAAG;IAClB,OAAO,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,EAAE,EAAE;IACpC,eAAe,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;IAC3C,WAAW,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE;CACxC,CAAC;AAEF,MAAM,CAAC,MAAM,eAAe,GAAG;IAC7B,KAAK,EAAE,EAAE;IACT,kBAAkB,EAAE,EAAE;CACvB,CAAC;AAEF,MAAM,CAAC,MAAM,YAAY,GAAG;IAC1B,wDAAwD,EAAE,eAAe;IACzE,KAAK,EAAE,eAAe;IACtB,4CAA4C,EAAE;QAC5C,KAAK,EAAE,8BAA8B;KACtC;IACD,+CAA+C,EAAE;QAC/C,KAAK,EAAE,iCAAiC;KACzC;IACD,2DAA2D,EAAE;QAC3D,KAAK,EAAE,6BAA6B;KACrC;IACD,qDAAqD,EAAE;QACrD,KAAK,EAAE,8BAA8B;QACrC,kBAAkB,EAAE;YAClB,WAAW,EAAE,MAAM;SACpB;KACF;IACD,wDAAwD,EAAE;QACxD,KAAK,EAAE,iCAAiC;QACxC,kBAAkB,EAAE;YAClB,WAAW,EAAE,MAAM;SACpB;KACF;IACD,+EAA+E,EAAE;QAC/E,KAAK,EAAE,4CAA4C;QACnD,yBAAyB,EAAE,IAAI;KAChC;IACD,KAAK,EAAE;QACL,KAAK,EAAE,WAAW;KACnB;CACF,CAAC;AAEF,MAAM,CAAC,MAAM,0BAA0B,GAAG;IACxC,cAAc,EAAE;QACd,OAAO;QACP,4CAA4C;QAC5C,+CAA+C;QAC/C,2DAA2D;QAC3D,qDAAqD;QACrD,wDAAwD;KACzD;IACD,UAAU,EAAE;QACV,OAAO;QACP,OAAO;KACR;IACD,uBAAuB,EAAE;QACvB,OAAO;QACP,+EAA+E;KAChF;CACF,CAAC"}

package/dist-tsc/generate-config-anndata.js

@@ -64,3 +64,4 @@ export class AnnDataAutoConfig extends AbstractAutoConfig {
         // TODO
     }
 }
+//# sourceMappingURL=generate-config-anndata.js.map

package/dist-tsc/generate-config-anndata.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"generate-config-anndata.js","sourceRoot":"","sources":["../src/generate-config-anndata.js"],"names":[],"mappings":"AAAA,mCAAmC;AACnC,OAAO,EAAE,kBAAkB,EAAE,MAAM,8BAA8B,CAAC;AAElE,MAAM,OAAO,iBAAkB,SAAQ,kBAAkB;IACvD,UAAU;QACR,MAAM,EAAE,SAAS,EAAE,GAAG,IAAI,CAAC;QAC3B,MAAM,OAAO,GAAG;YACd,YAAY,EAAE,EAAE;YAChB,OAAO,EAAE,EAAE;SACZ,CAAC;QAEF,SAAS,CAAC,OAAO,CAAC,CAAC,EAAE,IAAI,EAAE,KAAK,EAAE,EAAE,EAAE;YACpC,MAAM,SAAS,GAAG,IAAI,CAAC,WAAW,EAAE,CAAC;YACrC,MAAM,OAAO,GAAG,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC;YAClC,0BAA0B;YAC1B,IAAI,CAAC,IAAI,CAAC,CAAC,QAAQ,CAAC,SAAS,CAAC,EAAE,CAAC;gBAC/B,OAAO,CAAC,gBAAgB,GAAG;oBACzB,IAAI,EAAE,OAAO;oBAEb,mCAAmC;oBACnC,qEAAqE;oBACrE,8DAA8D;iBAC/D,CAAC;YACJ,CAAC;YAED,uBAAuB;YACvB,IAAI,CAAC,iBAAiB,EAAE,eAAe,CAAC,CAAC,QAAQ,CAAC,SAAS,CAAC,EAAE,CAAC;gBAC7D,mDAAmD;gBACnD,OAAO,CAAC,YAAY,GAAG;oBACrB,IAAI,EAAE,OAAO;iBACd,CAAC;YACJ,CAAC;YAED,oBAAoB;YACpB,IAAI,CAAC,cAAc,EAAE,YAAY,CAAC,CAAC,QAAQ,CAAC,SAAS,CAAC,EAAE,CAAC;gBACvD,OAAO,CAAC,YAAY,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,OAAO,EAAE,aAAa,EAAE,MAAM,EAAE,CAAC,CAAC;YACtE,CAAC;YACD,IAAI,CAAC,cAAc,EAAE,YAAY,CAAC,CAAC,QAAQ,CAAC,SAAS,CAAC,EAAE,CAAC;gBACvD,OAAO,CAAC,YAAY,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,OAAO,EAAE,aAAa,EAAE,OAAO,EAAE,CAAC,CAAC;YACvE,CAAC;YACD,IAAI,CAAC,aAAa,EAAE,WAAW,CAAC,CAAC,QAAQ,CAAC,SAAS,CAAC,EAAE,CAAC;gBACrD,OAAO,CAAC,YAAY,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,OAAO,EAAE,aAAa,EAAE,KAAK,EAAE,CAAC,CAAC;YACrE,CAAC;YAED,oBAAoB;YACpB,6EAA6E;YAC7E,MAAM,qBAAqB,GAAG;gBAC5B,SAAS,EAAE,UAAU,EAAE,YAAY,EAAE,WAAW,EAAE,UAAU;gBAC5D,QAAQ,EAAE,SAAS,EAAE,SAAS,EAAE,UAAU,EAAE,yBAAyB;gBACrE,QAAQ,EAAE,KAAK;aAChB,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE,CAAC,QAAQ,OAAO,EAAE,CAAC,CAAC;YACpC,IAAI,qBAAqB,CAAC,QAAQ,CAAC,SAAS,CAAC,EAAE,CAAC;gBAC9C,MAAM,IAAI,GAAG,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;gBACvC,OAAO,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAC;YAChD,CAAC;QACH,CAAC,CAAC,CAAC;QAEH,OAAO,OAAO,CAAC;IACjB,CAAC;IAED,QAAQ,CAAC,EAAE,EAAE,OAAO;QAClB,MAAM,EAAE,GAAG,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAC;QAC/B,OAAO,CAAC,OAAO,CAAC;YACd,GAAG;YACH,QAAQ;YACR,OAAO,EAAE,IAAI,CAAC,UAAU,EAAE;YAC1B,6BAA6B;SAC9B,CAAC,CAAC;IACL,CAAC;IAED,kDAAkD;IAClD,QAAQ,CAAC,EAAE,EAAE,OAAO,EAAE,YAAY;QAChC,OAAO;IACT,CAAC;CACF"}

package/dist-tsc/generate-config-helpers.js

@@ -15,3 +15,4 @@ export class AbstractAutoConfig {
         throw new Error('The addViews() method has not been implemented.');
     }
 }
+//# sourceMappingURL=generate-config-helpers.js.map

package/dist-tsc/generate-config-helpers.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"generate-config-helpers.js","sourceRoot":"","sources":["../src/generate-config-helpers.js"],"names":[],"mappings":"AAAA,mCAAmC;AACnC,MAAM,OAAO,kBAAkB;IAC7B,YAAY,WAAW;QACrB,MAAM,EAAE,GAAG,EAAE,QAAQ,EAAE,SAAS,EAAE,GAAG,WAAW,CAAC;QACjD,IAAI,CAAC,GAAG,GAAG,GAAG,CAAC;QACf,IAAI,CAAC,QAAQ,GAAG,QAAQ,CAAC;QACzB,IAAI,CAAC,SAAS,GAAG,SAAS,CAAC;IAC7B,CAAC;IAED,kDAAkD;IAClD,QAAQ,CAAC,EAAE,EAAE,OAAO;QAClB,MAAM,IAAI,KAAK,CAAC,iDAAiD,CAAC,CAAC;IACrE,CAAC;IAED,kDAAkD;IAClD,QAAQ,CAAC,EAAE,EAAE,OAAO,EAAE,YAAY;QAChC,MAAM,IAAI,KAAK,CAAC,iDAAiD,CAAC,CAAC;IACrE,CAAC;CACF"}

package/dist-tsc/generate-config-ome.js

@@ -22,3 +22,4 @@ export class OmeAutoConfig extends AbstractAutoConfig {
         vc.layout(hconcat(spatialView, lcView));
     }
 }
+//# sourceMappingURL=generate-config-ome.js.map

package/dist-tsc/generate-config-ome.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"generate-config-ome.js","sourceRoot":"","sources":["../src/generate-config-ome.js"],"names":[],"mappings":"AAAA,mCAAmC;AACnC,OAAO,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,qBAAqB,CAAC;AACvD,OAAO,EAAE,kBAAkB,EAAE,MAAM,8BAA8B,CAAC;AAElE,+DAA+D;AAC/D,oEAAoE;AACpE,MAAM,OAAO,aAAc,SAAQ,kBAAkB;IACnD,QAAQ,CAAC,EAAE,EAAE,OAAO;QAClB,MAAM,EAAE,GAAG,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAC;QAC/B,OAAO,CAAC,OAAO,CAAC;YACd,GAAG;YACH,QAAQ;YACR,iBAAiB;YACjB,6BAA6B;SAC9B,CAAC,CAAC;IACL,CAAC;IAED,kDAAkD;IAClD,QAAQ,CAAC,EAAE,EAAE,OAAO,EAAE,YAAY;QAChC,6CAA6C;QAC7C,MAAM,WAAW,GAAG,EAAE,CAAC,OAAO,CAAC,OAAO,EAAE,aAAa,CAAC,CAAC;QACvD,MAAM,MAAM,GAAG,EAAE,CAAC,OAAO,CAAC,OAAO,EAAE,qBAAqB,CAAC,CAAC;QAE1D,UAAU;QACV,EAAE,CAAC,MAAM,CAAC,OAAO,CAAC,WAAW,EAAE,MAAM,CAAC,CAAC,CAAC;IAC1C,CAAC;CACF"}

package/dist-tsc/generate-config-spatialdata.js

@@ -121,3 +121,4 @@ export class SpatialDataAutoConfig extends AbstractAutoConfig {
         vc.layout(hconcat(spatialView, vconcat(...controlViews)));
     }
 }
+//# sourceMappingURL=generate-config-spatialdata.js.map

package/dist-tsc/generate-config-spatialdata.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"generate-config-spatialdata.js","sourceRoot":"","sources":["../src/generate-config-spatialdata.js"],"names":[],"mappings":"AAAA,mCAAmC;AACnC,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AACvD,OAAO,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,qBAAqB,CAAC;AACvD,OAAO,EAAE,kBAAkB,EAAE,MAAM,8BAA8B,CAAC;AAElE,MAAM,OAAO,qBAAsB,SAAQ,kBAAkB;IAC3D,UAAU;QACR,MAAM,EAAE,SAAS,EAAE,GAAG,IAAI,CAAC;QAC3B,MAAM,OAAO,GAAG,EAAE,CAAC;QAEnB,MAAM,iBAAiB,GAAG,SAAS,CAAC,MAAM,CAAC,CAAC,EAAE,IAAI,EAAE,EAAE,EAAE;YACtD,MAAM,OAAO,GAAG,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC;YAClC,OAAO,OAAO,CAAC,KAAK,CAAC,uDAAuD,CAAC,CAAC;QAChF,CAAC,CAAC,CAAC;QAEH,iBAAiB,CAAC,OAAO,CAAC,CAAC,EAAE,IAAI,EAAE,KAAK,EAAE,EAAE,EAAE;YAC5C,MAAM,OAAO,GAAG,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC;YAElC,MAAM,QAAQ,GAAG,eAAe,CAAC,KAAK,CAAC,CAAC;YACxC,MAAM,qBAAqB,GAAG,QAAQ;gBACpC,EAAE,WAAW,EAAE,CAAC,CAAC,CAAC;gBAClB,EAAE,yBAAyB,EAAE,CAAC,CAAC,CAAC;gBAChC,EAAE,MAAM,EAAE,IAAI,CAAC;YAEjB,yBAAyB;YACzB,IAAI,OAAO,CAAC,KAAK,CAAC,qBAAqB,CAAC,EAAE,CAAC;gBACzC,OAAO,CAAC,KAAK,GAAG;oBACd,IAAI,EAAE,OAAO;oBACb,gBAAgB,EAAE,qBAAqB;oBACvC,kDAAkD;iBACnD,CAAC;YACJ,CAAC;YACD,0BAA0B;YAC1B,IAAI,OAAO,CAAC,KAAK,CAAC,qBAAqB,CAAC,EAAE,CAAC;gBACzC,OAAO,CAAC,gBAAgB,GAAG;oBACzB,IAAI,EAAE,OAAO;oBACb,gBAAgB,EAAE,qBAAqB;oBACvC,kDAAkD;iBACnD,CAAC;gBAEF,kDAAkD;YACpD,CAAC;YAED,0BAA0B;YAC1B,IAAI,OAAO,CAAC,KAAK,CAAC,qBAAqB,CAAC,EAAE,CAAC;gBACzC,gDAAgD;gBAChD,gDAAgD;gBAChD,OAAO,CAAC,gBAAgB,GAAG;oBACzB,IAAI,EAAE,OAAO;oBACb,gBAAgB,EAAE,qBAAqB;iBACxC,CAAC;gBAEF,kDAAkD;YACpD,CAAC;YAED,yBAAyB;YACzB;;;;;;;;;cASE;YAEF,yBAAyB;YACzB,IAAI,OAAO,CAAC,KAAK,CAAC,2BAA2B,CAAC,EAAE,CAAC;gBAC/C,oDAAoD;gBACpD,MAAM,QAAQ,GAAG,SAAS,CAAC,MAAM,CAAC,CAAC,EAAE,IAAI,EAAE,OAAO,EAAE,EAAE,EAAE,CAAC,OAAO,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC;gBAEnF,0CAA0C;gBAC1C,MAAM,IAAI,GAAG,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,IAAI,KAAK,GAAG,IAAI,IAAI,CAAC,CAAC;gBAC1D,IAAI,IAAI,EAAE,CAAC;oBACT,OAAO,CAAC,gBAAgB,GAAG;wBACzB,IAAI,EAAE,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC;wBAC5B,gBAAgB;qBACjB,CAAC;gBACJ,CAAC;gBAED,gDAAgD;gBAChD;;;;;;;;;;;;;;;;;kBAiBE;YACJ,CAAC;QACH,CAAC,CAAC,CAAC;QAEH,OAAO,OAAO,CAAC;IACjB,CAAC;IAED,QAAQ,CAAC,EAAE,EAAE,OAAO;QAClB,MAAM,EAAE,GAAG,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAC;QAC/B,OAAO,CAAC,OAAO,CAAC;YACd,GAAG;YACH,QAAQ;YACR,OAAO,EAAE,IAAI,CAAC,UAAU,EAAE;YAC1B,6BAA6B;SAC9B,CAAC,CAAC;IACL,CAAC;IAED,kDAAkD;IAClD,QAAQ,CAAC,EAAE,EAAE,OAAO,EAAE,YAAY;QAChC,MAAM,OAAO,GAAG,IAAI,CAAC,UAAU,EAAE,CAAC;QAElC,6CAA6C;QAC7C,MAAM,WAAW,GAAG,EAAE,CAAC,OAAO,CAAC,OAAO,EAAE,aAAa,CAAC,CAAC;QACvD,MAAM,MAAM,GAAG,EAAE,CAAC,OAAO,CAAC,OAAO,EAAE,qBAAqB,CAAC,CAAC;QAE1D,MAAM,YAAY,GAAG,CAAC,MAAM,CAAC,CAAC;QAC9B,4CAA4C;QAC5C,IAAI,OAAO,CAAC,OAAO,EAAE,CAAC;YACpB,MAAM,OAAO,GAAG,EAAE,CAAC,OAAO,CAAC,OAAO,EAAE,SAAS,CAAC,CAAC;YAC/C,YAAY,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;QAC7B,CAAC;QACD,wDAAwD;QACxD,IAAI,OAAO,CAAC,gBAAgB,EAAE,CAAC;YAC7B,MAAM,WAAW,GAAG,EAAE,CAAC,OAAO,CAAC,OAAO,EAAE,aAAa,CAAC,CAAC;YACvD,YAAY,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC;QACjC,CAAC;QAED,wCAAwC;QAExC,UAAU;QACV,EAAE,CAAC,MAAM,CAAC,OAAO,CAAC,WAAW,EAAE,OAAO,CAAC,GAAG,YAAY,CAAC,CAAC,CAAC,CAAC;IAC5D,CAAC;CACF"}

package/dist-tsc/generate-config.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"generate-config.d.ts","sourceRoot":"","sources":["../src/generate-config.js"],"names":[],"mappings":"AA4GA;;;;GAIG;AACH,+BAHW,MAAM,EAAE,GACN;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,EAAE,CAoB/C;AAED;;;;;;GAMG;AACH,uCALW,MAAM,GAGJ;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAC,EAAE,CAK9C;AAGD;;;;;;;;oBA4FC;AAED;;;;GAIG;AACH,sDAHW;IAAE,GAAG,MAAC;IAAC,QAAQ,MAAC;IAAC,KAAK,MAAA;CAAE,EAAE,GACzB,MAAM,EAAE,CAOnB;AAED;;;;GAIG;AACH,2CAHW;IAAE,GAAG,MAAC;IAAC,QAAQ,MAAC;IAAC,KAAK,MAAA;CAAE,EAAE,iBAC1B,MAAM,GAAC,IAAI;;;GAoDrB;+BA5S8B,qBAAqB"}
+{"version":3,"file":"generate-config.d.ts","sourceRoot":"","sources":["../src/generate-config.js"],"names":[],"mappings":"AAgHA;;;;GAIG;AACH,+BAHW,MAAM,EAAE,GACN;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,EAAE,CAoB/C;AAED;;;;;;GAMG;AACH,uCALW,MAAM,GAGJ;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAC,EAAE,CAK9C;AAGD;;;;;;;;oBA4FC;AAED;;;;GAIG;AACH,sDAHW;IAAE,GAAG,MAAC;IAAC,QAAQ,MAAC;IAAC,KAAK,MAAA;CAAE,EAAE,GACzB,MAAM,EAAE,CAOnB;AAED;;;;GAIG;AACH,2CAHW;IAAE,GAAG,MAAC;IAAC,QAAQ,MAAC;IAAC,KAAK,MAAA;CAAE,EAAE,iBAC1B,MAAM,GAAC,IAAI;;;GAoDrB;+BAhT8B,qBAAqB"}

package/dist-tsc/generate-config.js

@@ -21,6 +21,8 @@ const fileTypeToExtensions = {
     // Perhaps just assume one H5AD+one JSON (or .ref.json) file correspond to each other?
     [FileType.SPATIALDATA_ZARR]: ['.sd.zarr', '.sdata.zarr', '.spatialdata.zarr'],
     [FileType.SPATIALDATA_ZARR_ZIP]: ['.sd.zarr.zip', '.sdata.zarr.zip', '.spatialdata.zarr.zip'],
+    [FileType.GENOMIC_PROFILES_ZARR]: ['.multivec.zarr'],
+    [FileType.GENOMIC_PROFILES_ZARR_ZIP]: ['.multivec.zarr.zip'],
 };
 const fileTypeToClass = {
     // OME-TIFF
@@ -49,6 +51,8 @@ const ZARR_FILETYPES = [
     FileType.IMAGE_OME_ZARR_ZIP,
     FileType.OBS_SEGMENTATIONS_OME_ZARR,
     FileType.OBS_SEGMENTATIONS_OME_ZARR_ZIP,
+    FileType.GENOMIC_PROFILES_ZARR,
+    FileType.GENOMIC_PROFILES_ZARR_ZIP,
 ];
 function urlToFileType(url) {
     // TODO: for plain .zarr, we could open the root .attrs and try to guess a fileType
@@ -276,3 +280,4 @@ export async function generateConfig(parsedUrls, layoutOption = null) {
         stores,
     };
 }
+//# sourceMappingURL=generate-config.js.map

package/dist-tsc/generate-config.js.map

@@ -0,0 +1 @@
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package/dist-tsc/generate-config.test.js

@@ -237,3 +237,4 @@ describe('generateConfig', () => {
         ]);
     });
 });
+//# sourceMappingURL=generate-config.test.js.map

package/dist-tsc/generate-config.test.js.map

@@ -0,0 +1 @@
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package/dist-tsc/get-gist.d.ts

@@ -0,0 +1,6 @@
+export function fetchConfigFromGist(gist: any): Promise<{
+    title: any;
+    readmeContents: string | null;
+    configContents: string | null;
+}>;
+//# sourceMappingURL=get-gist.d.ts.map

package/dist-tsc/get-gist.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"get-gist.d.ts","sourceRoot":"","sources":["../src/get-gist.js"],"names":[],"mappings":"AAIA;;;;GAiCC"}

package/dist-tsc/get-gist.js

@@ -0,0 +1,30 @@
+// Reference: https://github.com/gosling-lang/gosling.js/blob/35bbabc708d3b1279c4f13908330742f3bb474ca/editor/Editor.tsx#L151
+import fetchJsonp from 'fetch-jsonp';
+export async function fetchConfigFromGist(gist) {
+    let metadata = null;
+    try {
+        // Don't ask me why but due to CORS we need to treat the JSON as JSONP
+        // which is not supported by the normal `fetch()` so we need `fetchJsonp()`
+        const response = await fetchJsonp(`https://gist.github.com/${gist}.json`);
+        metadata = await (response.ok ? response.json() : null);
+    }
+    catch (error) {
+        return Promise.reject(new Error('Gist not found'));
+    }
+    if (!metadata)
+        return Promise.reject(new Error('Gist not found'));
+    const dataFile = metadata.files.find(file => file.toLowerCase().endsWith('vitessce.json'));
+    const textFile = metadata.files.find(file => file.toLowerCase() === 'readme.md');
+    if (!dataFile)
+        return Promise.reject(new Error('Gist does not contain a Vitessce configuration.'));
+    const specUrl = new URL(`https://gist.githubusercontent.com/${gist}/raw/${dataFile}`);
+    const whenCode = fetch(specUrl.href).then(response => (response.status === 200 ? response.text() : null));
+    const readmeUrl = new URL(`https://gist.githubusercontent.com/${gist}/raw/${textFile}`);
+    const whenText = fetch(readmeUrl.href).then(response => (response.status === 200 ? response.text() : null));
+    return Promise.all([whenCode, whenText]).then(([configContents, readmeContents]) => ({
+        title: metadata.description,
+        readmeContents,
+        configContents,
+    }));
+}
+//# sourceMappingURL=get-gist.js.map

package/dist-tsc/get-gist.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"get-gist.js","sourceRoot":"","sources":["../src/get-gist.js"],"names":[],"mappings":"AAAA,6HAA6H;AAE7H,OAAO,UAAU,MAAM,aAAa,CAAC;AAErC,MAAM,CAAC,KAAK,UAAU,mBAAmB,CAAC,IAAI;IAC5C,IAAI,QAAQ,GAAG,IAAI,CAAC;IACpB,IAAI,CAAC;QACH,sEAAsE;QACtE,2EAA2E;QAC3E,MAAM,QAAQ,GAAG,MAAM,UAAU,CAAC,2BAA2B,IAAI,OAAO,CAAC,CAAC;QAC1E,QAAQ,GAAG,MAAM,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;IAC1D,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,OAAO,OAAO,CAAC,MAAM,CAAC,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAC,CAAC;IACrD,CAAC;IAED,IAAI,CAAC,QAAQ;QAAE,OAAO,OAAO,CAAC,MAAM,CAAC,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAC,CAAC;IAElE,MAAM,QAAQ,GAAG,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,eAAe,CAAC,CAAC,CAAC;IAC3F,MAAM,QAAQ,GAAG,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,WAAW,EAAE,KAAK,WAAW,CAAC,CAAC;IAEjF,IAAI,CAAC,QAAQ;QAAE,OAAO,OAAO,CAAC,MAAM,CAAC,IAAI,KAAK,CAAC,iDAAiD,CAAC,CAAC,CAAC;IAEnG,MAAM,OAAO,GAAG,IAAI,GAAG,CAAC,sCAAsC,IAAI,QAAQ,QAAQ,EAAE,CAAC,CAAC;IACtF,MAAM,QAAQ,GAAG,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,IAAI,CACvC,QAAQ,CAAC,EAAE,CAAC,CAAC,QAAQ,CAAC,MAAM,KAAK,GAAG,CAAC,CAAC,CAAC,QAAQ,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAC/D,CAAC;IAEF,MAAM,SAAS,GAAG,IAAI,GAAG,CAAC,sCAAsC,IAAI,QAAQ,QAAQ,EAAE,CAAC,CAAC;IACxF,MAAM,QAAQ,GAAG,KAAK,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,IAAI,CACzC,QAAQ,CAAC,EAAE,CAAC,CAAC,QAAQ,CAAC,MAAM,KAAK,GAAG,CAAC,CAAC,CAAC,QAAQ,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAC/D,CAAC;IAEF,OAAO,OAAO,CAAC,GAAG,CAAC,CAAC,QAAQ,EAAE,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,cAAc,EAAE,cAAc,CAAC,EAAE,EAAE,CAAC,CAAC;QACnF,KAAK,EAAE,QAAQ,CAAC,WAAW;QAC3B,cAAc;QACd,cAAc;KACf,CAAC,CAAC,CAAC;AACN,CAAC"}

package/dist-tsc/index.d.ts

@@ -1,3 +1,4 @@
+export { fetchConfigFromGist } from "./get-gist.js";
 export { VitessceConfig, vconcat, hconcat, CL as CoordinationLevel, getCoordinationSpaceAndScopes } from "./VitessceConfig.js";
 export { generateConfig, getHintOptions } from "./VitessceAutoConfig.js";
 export { HINTS_CONFIG, HINT_TYPE_TO_FILE_TYPE_MAP } from "./constants.js";

package/dist-tsc/index.js

@@ -3,3 +3,5 @@ export { generateConfig, getHintOptions } from './VitessceAutoConfig.js';
 export { HINTS_CONFIG, HINT_TYPE_TO_FILE_TYPE_MAP } from './constants.js';
 export { getInitialCoordinationScopePrefix, getInitialCoordinationScopeName, } from '@vitessce/utils';
 export { generateConfig as generateConfigAlt, parseUrls, parseUrlsFromString } from './generate-config.js';
+export { fetchConfigFromGist } from './get-gist.js';
+//# sourceMappingURL=index.js.map

package/dist-tsc/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.js"],"names":[],"mappings":"AAAA,OAAO,EAAE,cAAc,EAAE,OAAO,EAAE,OAAO,EAAE,EAAE,IAAI,iBAAiB,EAAE,6BAA6B,EAAE,MAAM,qBAAqB,CAAC;AAC/H,OAAO,EAAE,cAAc,EAAE,cAAc,EAAE,MAAM,yBAAyB,CAAC;AACzE,OAAO,EAAE,YAAY,EAAE,0BAA0B,EAAE,MAAM,gBAAgB,CAAC;AAC1E,OAAO,EACL,iCAAiC,EACjC,+BAA+B,GAChC,MAAM,iBAAiB,CAAC;AACzB,OAAO,EAAE,cAAc,IAAI,iBAAiB,EAAE,SAAS,EAAE,mBAAmB,EAAE,MAAM,sBAAsB,CAAC;AAC3G,OAAO,EAAE,mBAAmB,EAAE,MAAM,eAAe,CAAC"}

package/dist-tsc/utils.js

@@ -45,3 +45,4 @@ export function getNextScope(prevScopes) {
     } while (prevScopes.includes(nextScope));
     return nextScope;
 }
+//# sourceMappingURL=utils.js.map

package/dist-tsc/utils.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"utils.js","sourceRoot":"","sources":["../src/utils.js"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AACH,MAAM,UAAU,YAAY,CAAC,UAAU;IACrC,4CAA4C;IAC5C,MAAM,KAAK,GAAG,4BAA4B,CAAC;IAC3C,0DAA0D;IAC1D,qBAAqB;IACrB,sDAAsD;IACtD,MAAM,eAAe,GAAG,CAAC,CAAC,CAAC,CAAC;IAE5B,6BAA6B;IAC7B,iDAAiD;IACjD,kDAAkD;IAClD,SAAS,IAAI;QACX,MAAM,CAAC,GAAG,EAAE,CAAC;QACb,eAAe,CAAC,OAAO,CAAC,CAAC,SAAS,EAAE,EAAE;YACpC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC;QAC9B,CAAC,CAAC,CAAC;QACH,IAAI,SAAS,GAAG,IAAI,CAAC;QACrB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,eAAe,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;YAChD,MAAM,GAAG,GAAG,EAAE,eAAe,CAAC,CAAC,CAAC,CAAC;YACjC,IAAI,GAAG,IAAI,KAAK,CAAC,MAAM,EAAE,CAAC;gBACxB,eAAe,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;YACzB,CAAC;iBAAM,CAAC;gBACN,SAAS,GAAG,KAAK,CAAC;gBAClB,MAAM;YACR,CAAC;QACH,CAAC;QACD,IAAI,SAAS,EAAE,CAAC;YACd,eAAe,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QAC1B,CAAC;QACD,OAAO,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACpB,CAAC;IAED,IAAI,SAAS,CAAC;IACd,GAAG,CAAC;QACF,SAAS,GAAG,IAAI,EAAE,CAAC;IACrB,CAAC,QAAQ,UAAU,CAAC,QAAQ,CAAC,SAAS,CAAC,EAAE;IACzC,OAAO,SAAS,CAAC;AACnB,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/config",
-  "version": "4.0.0-test.2",
+  "version": "4.0.0",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -18,10 +18,11 @@
   "dependencies": {
     "zarrita": "0.6.1",
     "@zarrita/storage": "0.1.4",
-    "@vitessce/constants-internal": "4.0.0-test.2",
-    "@vitessce/utils": "4.0.0-test.2",
-    "@vitessce/zarr-utils": "4.0.0-test.2",
-    "@vitessce/globals": "4.0.0-test.2"
+    "fetch-jsonp": "^1.4.0",
+    "@vitessce/constants-internal": "4.0.0",
+    "@vitessce/utils": "4.0.0",
+    "@vitessce/globals": "4.0.0",
+    "@vitessce/zarr-utils": "4.0.0"
   },
   "scripts": {
     "bundle": "pnpm exec vite build -c ../../scripts/vite.config.mjs",

package/src/generate-config.js

@@ -24,6 +24,8 @@ const fileTypeToExtensions = {
   // Perhaps just assume one H5AD+one JSON (or .ref.json) file correspond to each other?
   [FileType.SPATIALDATA_ZARR]: ['.sd.zarr', '.sdata.zarr', '.spatialdata.zarr'],
   [FileType.SPATIALDATA_ZARR_ZIP]: ['.sd.zarr.zip', '.sdata.zarr.zip', '.spatialdata.zarr.zip'],
+  [FileType.GENOMIC_PROFILES_ZARR]: ['.multivec.zarr'],
+  [FileType.GENOMIC_PROFILES_ZARR_ZIP]: ['.multivec.zarr.zip'],
 };
 
 const fileTypeToClass = {
@@ -54,6 +56,8 @@ const ZARR_FILETYPES = [
   FileType.IMAGE_OME_ZARR_ZIP,
   FileType.OBS_SEGMENTATIONS_OME_ZARR,
   FileType.OBS_SEGMENTATIONS_OME_ZARR_ZIP,
+  FileType.GENOMIC_PROFILES_ZARR,
+  FileType.GENOMIC_PROFILES_ZARR_ZIP,
 ];
 
 function urlToFileType(url) {

package/src/get-gist.js

@@ -0,0 +1,38 @@
+// Reference: https://github.com/gosling-lang/gosling.js/blob/35bbabc708d3b1279c4f13908330742f3bb474ca/editor/Editor.tsx#L151
+
+import fetchJsonp from 'fetch-jsonp';
+
+export async function fetchConfigFromGist(gist) {
+  let metadata = null;
+  try {
+    // Don't ask me why but due to CORS we need to treat the JSON as JSONP
+    // which is not supported by the normal `fetch()` so we need `fetchJsonp()`
+    const response = await fetchJsonp(`https://gist.github.com/${gist}.json`);
+    metadata = await (response.ok ? response.json() : null);
+  } catch (error) {
+    return Promise.reject(new Error('Gist not found'));
+  }
+
+  if (!metadata) return Promise.reject(new Error('Gist not found'));
+
+  const dataFile = metadata.files.find(file => file.toLowerCase().endsWith('vitessce.json'));
+  const textFile = metadata.files.find(file => file.toLowerCase() === 'readme.md');
+
+  if (!dataFile) return Promise.reject(new Error('Gist does not contain a Vitessce configuration.'));
+
+  const specUrl = new URL(`https://gist.githubusercontent.com/${gist}/raw/${dataFile}`);
+  const whenCode = fetch(specUrl.href).then(
+    response => (response.status === 200 ? response.text() : null),
+  );
+
+  const readmeUrl = new URL(`https://gist.githubusercontent.com/${gist}/raw/${textFile}`);
+  const whenText = fetch(readmeUrl.href).then(
+    response => (response.status === 200 ? response.text() : null),
+  );
+
+  return Promise.all([whenCode, whenText]).then(([configContents, readmeContents]) => ({
+    title: metadata.description,
+    readmeContents,
+    configContents,
+  }));
+}

package/src/index.js

@@ -5,5 +5,5 @@ export {
   getInitialCoordinationScopePrefix,
   getInitialCoordinationScopeName,
 } from '@vitessce/utils';
-
 export { generateConfig as generateConfigAlt, parseUrls, parseUrlsFromString } from './generate-config.js';
+export { fetchConfigFromGist } from './get-gist.js';