@vitessce/config 3.9.9 → 3.9.11

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Files changed (5) hide show
  1. package/dist/index.js +8 -2
  2. package/dist-tsc/generate-config.d.ts.map +1 -1
  3. package/dist-tsc/generate-config.js +4 -0
  4. package/package.json +5 -5
  5. package/src/generate-config.js +4 -0
package/dist/index.js CHANGED
@@ -10,6 +10,8 @@ const FileType = {
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  // OME-Zarr - Zipped
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  IMAGE_OME_ZARR_ZIP: "image.ome-zarr.zip",
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  OBS_SEGMENTATIONS_OME_ZARR_ZIP: "obsSegmentations.ome-zarr.zip",
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+ GENOMIC_PROFILES_ZARR: "genomic-profiles.zarr",
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+ GENOMIC_PROFILES_ZARR_ZIP: "genomic-profiles.zarr.zip",
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  // OME-TIFF
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  IMAGE_OME_TIFF: "image.ome-tiff",
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  OBS_SEGMENTATIONS_OME_TIFF: "obsSegmentations.ome-tiff",
@@ -4392,7 +4394,9 @@ const fileTypeToExtensions = {
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  // TODO: how to handle h5ad-based AnnData (since needs reference JSON file).
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  // Perhaps just assume one H5AD+one JSON (or .ref.json) file correspond to each other?
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  [FileType.SPATIALDATA_ZARR]: [".sd.zarr", ".sdata.zarr", ".spatialdata.zarr"],
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- [FileType.SPATIALDATA_ZARR_ZIP]: [".sd.zarr.zip", ".sdata.zarr.zip", ".spatialdata.zarr.zip"]
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+ [FileType.SPATIALDATA_ZARR_ZIP]: [".sd.zarr.zip", ".sdata.zarr.zip", ".spatialdata.zarr.zip"],
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+ [FileType.GENOMIC_PROFILES_ZARR]: [".multivec.zarr"],
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+ [FileType.GENOMIC_PROFILES_ZARR_ZIP]: [".multivec.zarr.zip"]
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  };
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  const fileTypeToClass = {
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  // OME-TIFF
@@ -4418,7 +4422,9 @@ const ZARR_FILETYPES = [
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  FileType.IMAGE_OME_ZARR,
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  FileType.IMAGE_OME_ZARR_ZIP,
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  FileType.OBS_SEGMENTATIONS_OME_ZARR,
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- FileType.OBS_SEGMENTATIONS_OME_ZARR_ZIP
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+ FileType.OBS_SEGMENTATIONS_OME_ZARR_ZIP,
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+ FileType.GENOMIC_PROFILES_ZARR,
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+ FileType.GENOMIC_PROFILES_ZARR_ZIP
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  ];
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  function urlToFileType(url) {
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  const match = Object.entries(fileTypeToExtensions).find(
package/dist-tsc/generate-config.d.ts.map CHANGED
@@ -1 +1 @@
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- {"version":3,"file":"generate-config.d.ts","sourceRoot":"","sources":["../src/generate-config.js"],"names":[],"mappings":"AA4GA;;;;GAIG;AACH,+BAHW,MAAM,EAAE,GACN;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,EAAE,CAoB/C;AAED;;;;;;GAMG;AACH,uCALW,MAAM,GAGJ;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAC,EAAE,CAK9C;AAGD;;;;;;;;oBA4FC;AAED;;;;GAIG;AACH,sDAHW;IAAE,GAAG,MAAC;IAAC,QAAQ,MAAC;IAAC,KAAK,MAAA;CAAE,EAAE,GACzB,MAAM,EAAE,CAOnB;AAED;;;;GAIG;AACH,2CAHW;IAAE,GAAG,MAAC;IAAC,QAAQ,MAAC;IAAC,KAAK,MAAA;CAAE,EAAE,iBAC1B,MAAM,GAAC,IAAI;;;GAoDrB;+BA5S8B,qBAAqB"}
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+ {"version":3,"file":"generate-config.d.ts","sourceRoot":"","sources":["../src/generate-config.js"],"names":[],"mappings":"AAgHA;;;;GAIG;AACH,+BAHW,MAAM,EAAE,GACN;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,EAAE,CAoB/C;AAED;;;;;;GAMG;AACH,uCALW,MAAM,GAGJ;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAC,EAAE,CAK9C;AAGD;;;;;;;;oBA4FC;AAED;;;;GAIG;AACH,sDAHW;IAAE,GAAG,MAAC;IAAC,QAAQ,MAAC;IAAC,KAAK,MAAA;CAAE,EAAE,GACzB,MAAM,EAAE,CAOnB;AAED;;;;GAIG;AACH,2CAHW;IAAE,GAAG,MAAC;IAAC,QAAQ,MAAC;IAAC,KAAK,MAAA;CAAE,EAAE,iBAC1B,MAAM,GAAC,IAAI;;;GAoDrB;+BAhT8B,qBAAqB"}
package/dist-tsc/generate-config.js CHANGED
@@ -21,6 +21,8 @@ const fileTypeToExtensions = {
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  // Perhaps just assume one H5AD+one JSON (or .ref.json) file correspond to each other?
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  [FileType.SPATIALDATA_ZARR]: ['.sd.zarr', '.sdata.zarr', '.spatialdata.zarr'],
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  [FileType.SPATIALDATA_ZARR_ZIP]: ['.sd.zarr.zip', '.sdata.zarr.zip', '.spatialdata.zarr.zip'],
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+ [FileType.GENOMIC_PROFILES_ZARR]: ['.multivec.zarr'],
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+ [FileType.GENOMIC_PROFILES_ZARR_ZIP]: ['.multivec.zarr.zip'],
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  };
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  const fileTypeToClass = {
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  // OME-TIFF
@@ -49,6 +51,8 @@ const ZARR_FILETYPES = [
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  FileType.IMAGE_OME_ZARR_ZIP,
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  FileType.OBS_SEGMENTATIONS_OME_ZARR,
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  FileType.OBS_SEGMENTATIONS_OME_ZARR_ZIP,
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+ FileType.GENOMIC_PROFILES_ZARR,
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+ FileType.GENOMIC_PROFILES_ZARR_ZIP,
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  ];
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  function urlToFileType(url) {
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  // TODO: for plain .zarr, we could open the root .attrs and try to guess a fileType
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@vitessce/config",
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- "version": "3.9.9",
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+ "version": "3.9.11",
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  "author": "HIDIVE Lab at HMS",
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  "homepage": "http://vitessce.io",
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  "repository": {
@@ -18,10 +18,10 @@
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  "dependencies": {
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  "zarrita": "0.6.1",
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  "@zarrita/storage": "0.1.4",
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- "@vitessce/constants-internal": "3.9.9",
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- "@vitessce/utils": "3.9.9",
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- "@vitessce/globals": "3.9.9",
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- "@vitessce/zarr-utils": "3.9.9"
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+ "@vitessce/utils": "3.9.11",
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+ "@vitessce/constants-internal": "3.9.11",
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+ "@vitessce/zarr-utils": "3.9.11",
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+ "@vitessce/globals": "3.9.11"
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  },
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  "scripts": {
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  "bundle": "pnpm exec vite build -c ../../scripts/vite.config.mjs",
package/src/generate-config.js CHANGED
@@ -24,6 +24,8 @@ const fileTypeToExtensions = {
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  // Perhaps just assume one H5AD+one JSON (or .ref.json) file correspond to each other?
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  [FileType.SPATIALDATA_ZARR]: ['.sd.zarr', '.sdata.zarr', '.spatialdata.zarr'],
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  [FileType.SPATIALDATA_ZARR_ZIP]: ['.sd.zarr.zip', '.sdata.zarr.zip', '.spatialdata.zarr.zip'],
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+ [FileType.GENOMIC_PROFILES_ZARR]: ['.multivec.zarr'],
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+ [FileType.GENOMIC_PROFILES_ZARR_ZIP]: ['.multivec.zarr.zip'],
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  };
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  const fileTypeToClass = {
@@ -54,6 +56,8 @@ const ZARR_FILETYPES = [
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  FileType.IMAGE_OME_ZARR_ZIP,
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  FileType.OBS_SEGMENTATIONS_OME_ZARR,
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  FileType.OBS_SEGMENTATIONS_OME_ZARR_ZIP,
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+ FileType.GENOMIC_PROFILES_ZARR,
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+ FileType.GENOMIC_PROFILES_ZARR_ZIP,
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  ];
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  function urlToFileType(url) {