@vitessce/config 3.9.9 → 3.9.10

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (5) hide show
  1. package/dist/index.js +8 -2
  2. package/dist-tsc/generate-config.d.ts.map +1 -1
  3. package/dist-tsc/generate-config.js +4 -0
  4. package/package.json +5 -5
  5. package/src/generate-config.js +4 -0
package/dist/index.js CHANGED
@@ -10,6 +10,8 @@ const FileType = {
10
10
  // OME-Zarr - Zipped
11
11
  IMAGE_OME_ZARR_ZIP: "image.ome-zarr.zip",
12
12
  OBS_SEGMENTATIONS_OME_ZARR_ZIP: "obsSegmentations.ome-zarr.zip",
13
+ GENOMIC_PROFILES_ZARR: "genomic-profiles.zarr",
14
+ GENOMIC_PROFILES_ZARR_ZIP: "genomic-profiles.zarr.zip",
13
15
  // OME-TIFF
14
16
  IMAGE_OME_TIFF: "image.ome-tiff",
15
17
  OBS_SEGMENTATIONS_OME_TIFF: "obsSegmentations.ome-tiff",
@@ -4392,7 +4394,9 @@ const fileTypeToExtensions = {
4392
4394
  // TODO: how to handle h5ad-based AnnData (since needs reference JSON file).
4393
4395
  // Perhaps just assume one H5AD+one JSON (or .ref.json) file correspond to each other?
4394
4396
  [FileType.SPATIALDATA_ZARR]: [".sd.zarr", ".sdata.zarr", ".spatialdata.zarr"],
4395
- [FileType.SPATIALDATA_ZARR_ZIP]: [".sd.zarr.zip", ".sdata.zarr.zip", ".spatialdata.zarr.zip"]
4397
+ [FileType.SPATIALDATA_ZARR_ZIP]: [".sd.zarr.zip", ".sdata.zarr.zip", ".spatialdata.zarr.zip"],
4398
+ [FileType.GENOMIC_PROFILES_ZARR]: [".multivec.zarr"],
4399
+ [FileType.GENOMIC_PROFILES_ZARR_ZIP]: [".multivec.zarr.zip"]
4396
4400
  };
4397
4401
  const fileTypeToClass = {
4398
4402
  // OME-TIFF
@@ -4418,7 +4422,9 @@ const ZARR_FILETYPES = [
4418
4422
  FileType.IMAGE_OME_ZARR,
4419
4423
  FileType.IMAGE_OME_ZARR_ZIP,
4420
4424
  FileType.OBS_SEGMENTATIONS_OME_ZARR,
4421
- FileType.OBS_SEGMENTATIONS_OME_ZARR_ZIP
4425
+ FileType.OBS_SEGMENTATIONS_OME_ZARR_ZIP,
4426
+ FileType.GENOMIC_PROFILES_ZARR,
4427
+ FileType.GENOMIC_PROFILES_ZARR_ZIP
4422
4428
  ];
4423
4429
  function urlToFileType(url) {
4424
4430
  const match = Object.entries(fileTypeToExtensions).find(
package/dist-tsc/generate-config.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"generate-config.d.ts","sourceRoot":"","sources":["../src/generate-config.js"],"names":[],"mappings":"AA4GA;;;;GAIG;AACH,+BAHW,MAAM,EAAE,GACN;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,EAAE,CAoB/C;AAED;;;;;;GAMG;AACH,uCALW,MAAM,GAGJ;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAC,EAAE,CAK9C;AAGD;;;;;;;;oBA4FC;AAED;;;;GAIG;AACH,sDAHW;IAAE,GAAG,MAAC;IAAC,QAAQ,MAAC;IAAC,KAAK,MAAA;CAAE,EAAE,GACzB,MAAM,EAAE,CAOnB;AAED;;;;GAIG;AACH,2CAHW;IAAE,GAAG,MAAC;IAAC,QAAQ,MAAC;IAAC,KAAK,MAAA;CAAE,EAAE,iBAC1B,MAAM,GAAC,IAAI;;;GAoDrB;+BA5S8B,qBAAqB"}
1
+ {"version":3,"file":"generate-config.d.ts","sourceRoot":"","sources":["../src/generate-config.js"],"names":[],"mappings":"AAgHA;;;;GAIG;AACH,+BAHW,MAAM,EAAE,GACN;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,EAAE,CAoB/C;AAED;;;;;;GAMG;AACH,uCALW,MAAM,GAGJ;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAC,EAAE,CAK9C;AAGD;;;;;;;;oBA4FC;AAED;;;;GAIG;AACH,sDAHW;IAAE,GAAG,MAAC;IAAC,QAAQ,MAAC;IAAC,KAAK,MAAA;CAAE,EAAE,GACzB,MAAM,EAAE,CAOnB;AAED;;;;GAIG;AACH,2CAHW;IAAE,GAAG,MAAC;IAAC,QAAQ,MAAC;IAAC,KAAK,MAAA;CAAE,EAAE,iBAC1B,MAAM,GAAC,IAAI;;;GAoDrB;+BAhT8B,qBAAqB"}
package/dist-tsc/generate-config.js CHANGED
@@ -21,6 +21,8 @@ const fileTypeToExtensions = {
21
21
  // Perhaps just assume one H5AD+one JSON (or .ref.json) file correspond to each other?
22
22
  [FileType.SPATIALDATA_ZARR]: ['.sd.zarr', '.sdata.zarr', '.spatialdata.zarr'],
23
23
  [FileType.SPATIALDATA_ZARR_ZIP]: ['.sd.zarr.zip', '.sdata.zarr.zip', '.spatialdata.zarr.zip'],
24
+ [FileType.GENOMIC_PROFILES_ZARR]: ['.multivec.zarr'],
25
+ [FileType.GENOMIC_PROFILES_ZARR_ZIP]: ['.multivec.zarr.zip'],
24
26
  };
25
27
  const fileTypeToClass = {
26
28
  // OME-TIFF
@@ -49,6 +51,8 @@ const ZARR_FILETYPES = [
49
51
  FileType.IMAGE_OME_ZARR_ZIP,
50
52
  FileType.OBS_SEGMENTATIONS_OME_ZARR,
51
53
  FileType.OBS_SEGMENTATIONS_OME_ZARR_ZIP,
54
+ FileType.GENOMIC_PROFILES_ZARR,
55
+ FileType.GENOMIC_PROFILES_ZARR_ZIP,
52
56
  ];
53
57
  function urlToFileType(url) {
54
58
  // TODO: for plain .zarr, we could open the root .attrs and try to guess a fileType
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@vitessce/config",
3
- "version": "3.9.9",
3
+ "version": "3.9.10",
4
4
  "author": "HIDIVE Lab at HMS",
5
5
  "homepage": "http://vitessce.io",
6
6
  "repository": {
@@ -18,10 +18,10 @@
18
18
  "dependencies": {
19
19
  "zarrita": "0.6.1",
20
20
  "@zarrita/storage": "0.1.4",
21
- "@vitessce/constants-internal": "3.9.9",
22
- "@vitessce/utils": "3.9.9",
23
- "@vitessce/globals": "3.9.9",
24
- "@vitessce/zarr-utils": "3.9.9"
21
+ "@vitessce/constants-internal": "3.9.10",
22
+ "@vitessce/globals": "3.9.10",
23
+ "@vitessce/utils": "3.9.10",
24
+ "@vitessce/zarr-utils": "3.9.10"
25
25
  },
26
26
  "scripts": {
27
27
  "bundle": "pnpm exec vite build -c ../../scripts/vite.config.mjs",
package/src/generate-config.js CHANGED
@@ -24,6 +24,8 @@ const fileTypeToExtensions = {
24
24
  // Perhaps just assume one H5AD+one JSON (or .ref.json) file correspond to each other?
25
25
  [FileType.SPATIALDATA_ZARR]: ['.sd.zarr', '.sdata.zarr', '.spatialdata.zarr'],
26
26
  [FileType.SPATIALDATA_ZARR_ZIP]: ['.sd.zarr.zip', '.sdata.zarr.zip', '.spatialdata.zarr.zip'],
27
+ [FileType.GENOMIC_PROFILES_ZARR]: ['.multivec.zarr'],
28
+ [FileType.GENOMIC_PROFILES_ZARR_ZIP]: ['.multivec.zarr.zip'],
27
29
  };
28
30
 
29
31
  const fileTypeToClass = {
@@ -54,6 +56,8 @@ const ZARR_FILETYPES = [
54
56
  FileType.IMAGE_OME_ZARR_ZIP,
55
57
  FileType.OBS_SEGMENTATIONS_OME_ZARR,
56
58
  FileType.OBS_SEGMENTATIONS_OME_ZARR_ZIP,
59
+ FileType.GENOMIC_PROFILES_ZARR,
60
+ FileType.GENOMIC_PROFILES_ZARR_ZIP,
57
61
  ];
58
62
 
59
63
  function urlToFileType(url) {