@vitessce/config 3.9.6 → 3.9.8

package/dist/index.js

@@ -4206,6 +4206,12 @@ function transformEntriesForZipFileStore(entries) {
   }));
   return newEntries;
 }
+function flattenOmeAttrs(rootAttrs) {
+  if (rootAttrs && typeof rootAttrs.ome === "object" && rootAttrs.ome !== null) {
+    return { ...rootAttrs.ome, ...rootAttrs };
+  }
+  return rootAttrs;
+}
 class AbstractAutoConfig2 {
   constructor(parsedStore) {
     const { url, fileType, zmetadata } = parsedStore;
@@ -4298,7 +4304,8 @@ class SpatialDataAutoConfig extends AbstractAutoConfig2 {
     });
     availableElements.forEach(({ path, attrs }) => {
       const relPath = path.substring(1);
-      const firstCoordinateSystem = attrs?.multiscales?.[0]?.coordinateTransformations?.[0]?.output?.name;
+      const omeAttrs = flattenOmeAttrs(attrs);
+      const firstCoordinateSystem = omeAttrs?.multiscales?.[0]?.coordinateTransformations?.[0]?.output?.name;
       if (relPath.match(/^(images)\/([^/]*)$/)) {
         options.image = {
           path: relPath,

package/dist-tsc/generate-config-spatialdata.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"generate-config-spatialdata.d.ts","sourceRoot":"","sources":["../src/generate-config-spatialdata.js"],"names":[],"mappings":"AAIA;IACE,iBAiGC;CAqCF;mCAzIkC,8BAA8B"}
+{"version":3,"file":"generate-config-spatialdata.d.ts","sourceRoot":"","sources":["../src/generate-config-spatialdata.js"],"names":[],"mappings":"AAKA;IACE,iBAkGC;CAqCF;mCA1IkC,8BAA8B"}

package/dist-tsc/generate-config-spatialdata.js

@@ -1,4 +1,5 @@
 /* eslint-disable no-unused-vars */
+import { flattenOmeAttrs } from '@vitessce/zarr-utils';
 import { hconcat, vconcat } from './VitessceConfig.js';
 import { AbstractAutoConfig } from './generate-config-helpers.js';
 export class SpatialDataAutoConfig extends AbstractAutoConfig {
@@ -11,7 +12,8 @@ export class SpatialDataAutoConfig extends AbstractAutoConfig {
         });
         availableElements.forEach(({ path, attrs }) => {
             const relPath = path.substring(1);
-            const firstCoordinateSystem = attrs
+            const omeAttrs = flattenOmeAttrs(attrs);
+            const firstCoordinateSystem = omeAttrs
                 ?.multiscales?.[0]
                 ?.coordinateTransformations?.[0]
                 ?.output?.name;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/config",
-  "version": "3.9.6",
+  "version": "3.9.8",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -18,10 +18,10 @@
   "dependencies": {
     "zarrita": "0.6.1",
     "@zarrita/storage": "0.1.4",
-    "@vitessce/constants-internal": "3.9.6",
-    "@vitessce/utils": "3.9.6",
-    "@vitessce/globals": "3.9.6",
-    "@vitessce/zarr-utils": "3.9.6"
+    "@vitessce/constants-internal": "3.9.8",
+    "@vitessce/utils": "3.9.8",
+    "@vitessce/globals": "3.9.8",
+    "@vitessce/zarr-utils": "3.9.8"
   },
   "scripts": {
     "bundle": "pnpm exec vite build -c ../../scripts/vite.config.mjs",

package/src/generate-config-spatialdata.js

@@ -1,4 +1,5 @@
 /* eslint-disable no-unused-vars */
+import { flattenOmeAttrs } from '@vitessce/zarr-utils';
 import { hconcat, vconcat } from './VitessceConfig.js';
 import { AbstractAutoConfig } from './generate-config-helpers.js';
 
@@ -15,7 +16,8 @@ export class SpatialDataAutoConfig extends AbstractAutoConfig {
     availableElements.forEach(({ path, attrs }) => {
       const relPath = path.substring(1);
 
-      const firstCoordinateSystem = attrs
+      const omeAttrs = flattenOmeAttrs(attrs);
+      const firstCoordinateSystem = omeAttrs
         ?.multiscales?.[0]
         ?.coordinateTransformations?.[0]
         ?.output?.name;