@vitessce/config 3.6.7 → 3.6.9
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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{"version":3,"file":"generate-config-spatialdata.d.ts","sourceRoot":"","sources":["../src/generate-config-spatialdata.js"],"names":[],"mappings":"AAGA;IACE,
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{"version":3,"file":"generate-config-spatialdata.d.ts","sourceRoot":"","sources":["../src/generate-config-spatialdata.js"],"names":[],"mappings":"AAGA;IACE,iBA0FC;CAgBF;mCA7GkC,8BAA8B"}
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@@ -24,7 +24,7 @@ export class SpatialDataAutoConfig extends AbstractAutoConfig {
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}
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// Handle labels elements.
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if (relPath.match(/^(labels)\/([^/]*)$/)) {
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options.
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options.obsSegmentations = {
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path: relPath,
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coordinateSystem: firstCoordinateSystem,
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// TODO: support a fileUid property in the schema?
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@@ -41,6 +41,14 @@ export class SpatialDataAutoConfig extends AbstractAutoConfig {
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};
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// TODO: check which table annotates these shapes.
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}
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// Handle point elements.
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if (relPath.match(/^(points)\/([^/]*)$/)) {
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options.obsPoints = {
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path: relPath,
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coordinateSystem: firstCoordinateSystem,
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};
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// TODO: check which table annotates these shapes.
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}
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// Handle table elements.
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if (relPath.match(/^(tables|table)\/([^/]*)$/)) {
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// Identify all sub-paths within this table element.
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@@ -159,7 +159,7 @@ describe('generateConfig', () => {
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path: 'images/raw_image',
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coordinateSystem: 'global',
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},
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-
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obsSegmentations: {
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path: 'labels/segmentation_mask',
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coordinateSystem: 'global',
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},
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@@ -171,6 +171,9 @@ describe('generateConfig', () => {
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obsFeatureMatrix: {
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path: 'tables/table/X',
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},
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obsPoints: {
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path: 'points/transcripts',
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},
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obsSets: {
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tablePath: 'tables/table',
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obsSets: [
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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{
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"name": "@vitessce/config",
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"version": "3.6.
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"version": "3.6.9",
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"author": "HIDIVE Lab at HMS",
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"homepage": "http://vitessce.io",
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"repository": {
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@@ -17,10 +17,10 @@
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],
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"dependencies": {
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"zarrita": "0.5.2",
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"@vitessce/constants-internal": "3.6.
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"@vitessce/utils": "3.6.
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"@vitessce/globals": "3.6.
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"@vitessce/zarr-utils": "3.6.
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"@vitessce/constants-internal": "3.6.9",
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"@vitessce/utils": "3.6.9",
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"@vitessce/globals": "3.6.9",
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"@vitessce/zarr-utils": "3.6.9"
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},
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"scripts": {
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"bundle": "pnpm exec vite build -c ../../scripts/vite.config.js",
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@@ -29,7 +29,7 @@ export class SpatialDataAutoConfig extends AbstractAutoConfig {
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}
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// Handle labels elements.
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if (relPath.match(/^(labels)\/([^/]*)$/)) {
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options.
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options.obsSegmentations = {
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path: relPath,
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coordinateSystem: firstCoordinateSystem,
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// TODO: support a fileUid property in the schema?
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@@ -50,6 +50,16 @@ export class SpatialDataAutoConfig extends AbstractAutoConfig {
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// TODO: check which table annotates these shapes.
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}
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// Handle point elements.
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if (relPath.match(/^(points)\/([^/]*)$/)) {
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options.obsPoints = {
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path: relPath,
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coordinateSystem: firstCoordinateSystem,
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};
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// TODO: check which table annotates these shapes.
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}
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// Handle table elements.
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if (relPath.match(/^(tables|table)\/([^/]*)$/)) {
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// Identify all sub-paths within this table element.
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@@ -172,7 +172,7 @@ describe('generateConfig', () => {
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path: 'images/raw_image',
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coordinateSystem: 'global',
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},
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-
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obsSegmentations: {
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path: 'labels/segmentation_mask',
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coordinateSystem: 'global',
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},
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@@ -184,6 +184,9 @@ describe('generateConfig', () => {
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obsFeatureMatrix: {
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path: 'tables/table/X',
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},
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obsPoints: {
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path: 'points/transcripts',
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},
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obsSets: {
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tablePath: 'tables/table',
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obsSets: [
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