@vitessce/config 3.6.11 → 3.6.12
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/index.js +20 -11
- package/dist-tsc/VitessceConfig.d.ts +16 -15
- package/dist-tsc/VitessceConfig.d.ts.map +1 -1
- package/dist-tsc/VitessceConfig.js +18 -10
- package/dist-tsc/VitessceConfig.test.js +44 -0
- package/package.json +5 -5
- package/src/VitessceConfig.js +18 -10
- package/src/VitessceConfig.test.js +45 -0
package/dist/index.js
CHANGED
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@@ -689,12 +689,13 @@ class VitessceConfigDatasetFile {
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* which may provide additional parameters to the loader class
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* corresponding to the specified fileType.
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*/
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constructor(url, fileType, coordinationValues, options) {
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constructor(url, fileType, coordinationValues, options, requestInit) {
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this.file = {
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url,
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fileType,
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...coordinationValues ? { coordinationValues } : {},
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...options ? { options } : {}
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...options ? { options } : {},
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...requestInit ? { requestInit } : {}
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};
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}
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/**
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@@ -735,6 +736,7 @@ class VitessceConfigDataset {
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let fileType;
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let coordinationValues;
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let options;
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let requestInit;
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if (args.length > 0) {
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url = params;
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let dataType;
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@@ -748,13 +750,14 @@ class VitessceConfigDataset {
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url,
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fileType,
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options,
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-
coordinationValues
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coordinationValues,
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requestInit
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} = params);
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} else {
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throw new Error("Expected addFile argument to be an object.");
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}
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this.dataset.files.push(
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new VitessceConfigDatasetFile(url, fileType, coordinationValues, options)
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new VitessceConfigDatasetFile(url, fileType, coordinationValues, options, requestInit)
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);
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return this;
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}
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@@ -1123,13 +1126,19 @@ class VitessceConfig {
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* Add a new view to the config.
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* @param {VitessceConfigDataset} dataset The dataset instance which defines the data
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* that will be displayed in the view.
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* @param {string} component A component name, such as "scatterplot"
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*
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* @param {
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* @param {number} options.
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*
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* @param {number} options.
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*
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* @param {string} component A component name, such as "scatterplot"
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* or "spatial".
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* @param {object|undefined} options Extra options for the component.
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* @param {number|undefined} options.x The x-coordinate for the view
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* in the grid layout.
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* @param {number|undefined} options.y The y-coordinate for the view
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* in the grid layout.
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* @param {number|undefined} options.w The width for the view in the
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* grid layout.
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* @param {number|undefined} options.h The height for the view in the
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* grid layout.
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* @param {string|undefined} options.mapping A convenience parameter
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* for setting the EMBEDDING_TYPE
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* coordination value. Only applicable if the component is "scatterplot".
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* @returns {VitessceConfigView} A new view instance.
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*/
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@@ -31,8 +31,9 @@ export class VitessceConfigDatasetFile {
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* which may provide additional parameters to the loader class
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* corresponding to the specified fileType.
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*/
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-
constructor(url: string, fileType: string, coordinationValues: any, options: object | array | null);
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constructor(url: string, fileType: string, coordinationValues: any, options: object | array | null, requestInit: any);
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file: {
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requestInit?: any;
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options?: any;
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coordinationValues?: any;
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url: string;
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@@ -261,23 +262,23 @@ export class VitessceConfig {
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* Add a new view to the config.
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* @param {VitessceConfigDataset} dataset The dataset instance which defines the data
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* that will be displayed in the view.
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* @param {string} component A component name, such as "scatterplot"
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*
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* @param {
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* @param {number} options.
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*
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* @param {number} options.
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*
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* @param {string} component A component name, such as "scatterplot"
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* or "spatial".
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* @param {object|undefined} options Extra options for the component.
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* @param {number|undefined} options.x The x-coordinate for the view
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* in the grid layout.
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* @param {number|undefined} options.y The y-coordinate for the view
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* in the grid layout.
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* @param {number|undefined} options.w The width for the view in the
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* grid layout.
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* @param {number|undefined} options.h The height for the view in the
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* grid layout.
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* @param {string|undefined} options.mapping A convenience parameter
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* for setting the EMBEDDING_TYPE
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* coordination value. Only applicable if the component is "scatterplot".
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* @returns {VitessceConfigView} A new view instance.
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*/
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-
addView(dataset: VitessceConfigDataset, component: string, options:
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x: number;
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y: number;
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w: number;
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h: number;
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mapping: number;
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-
}): VitessceConfigView;
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addView(dataset: VitessceConfigDataset, component: string, options: object | undefined): VitessceConfigView;
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/**
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* Get an array of new coordination scope instances corresponding to coordination types
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* of interest.
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"VitessceConfig.d.ts","sourceRoot":"","sources":["../src/VitessceConfig.js"],"names":[],"mappings":"
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1
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{"version":3,"file":"VitessceConfig.d.ts","sourceRoot":"","sources":["../src/VitessceConfig.js"],"names":[],"mappings":"AA6XA;;;;;GAKG;AACH,kCAJe,CAAC,kBAAkB,GAAC,yBAAyB,GAAC,yBAAyB,CAAC,EAAA,GAE1E,yBAAyB,CAKrC;AAED;;;;;GAKG;AACH,kCAJe,CAAC,kBAAkB,GAAC,yBAAyB,GAAC,yBAAyB,CAAC,EAAA,GAE1E,yBAAyB,CAKrC;AAsBD,kDAEC;AAsmBD;;;;EAiBC;AA5hCD;;GAEG;AACH;IACE;;;;;;;;OAQG;IACH,iBAPW,MAAM,YAEN,MAAM,oCACN,MAAM,GAAC,KAAK,GAAC,IAAI,oBAY3B;IAPC;;;;;;MAMC;IAGH;;OAEG;IACH,UAFa,MAAM,CAIlB;CACF;AAED;;GAEG;AACH;IACE;;;;;OAKG;IACH,iBAJW,MAAM,QACN,MAAM,eACN,MAAM,EAShB;IANC;;;;;MAKC;IAGH;;;;;;;;;;OAUG;IACH,gBARG;QAAiC,GAAG,EAA5B,MAAM,GAAC,SAAS;QACD,QAAQ,EAAvB,MAAM;QACmB,kBAAkB,EAA3C,MAAM,GAAC,SAAS;QACe,OAAO,EAAtC,MAAM,GAAC,KAAK,GAAC,SAAS;KAG9B,mBAAU,qBAAqB,CA8BjC;IAED;;OAEG;IACH,UAFa,MAAM,CAOlB;CACF;AA0ID;;GAEG;AACH;IACE;;;;;;;;;OASG;IACH,uBARW,MAAM,sBACN,MAAM,KAEN,MAAM,KACN,MAAM,KACN,MAAM,KACN,MAAM,YAahB;IAVC;;;;;;;;;MASC;IAGH;;;;;OAKG;IACH,yBAJe,+BAA+B,EAAA,GAEjC,kBAAkB,CAQ9B;IAED;;;;;OAKG;IACH,gCAJW,MAAM,GAEJ,kBAAkB,CAiB9B;IAED;;;;OAIG;IACH,+BAHW,mCAAmC,GACjC,kBAAkB,CAe9B;IAED;;;;;;;QAOI;IACJ,WANY,MAAM,KACN,MAAM,KACN,MAAM,KACN,MAAM,GACJ,kBAAkB,CAS/B;IAED;;;OAGG;IACH,sBAFa,kBAAkB,CAQ9B;IAED;;OAEG;IACH,UAFa,MAAM,CAIlB;CACF;AAED;;GAEG;AACH;IACE,wBAEC;IADC,WAAkB;CAErB;AAED;;GAEG;AACH;IACE,wBAEC;IADC,WAAkB;CAErB;AAgDD;;GAEG;AACH;IACE;;;;;OAKG;IACH,mBAJW,MAAM,UACN,MAAM,WACN,CAAC,GAAG,CAAC,EAMf;IAHC,cAAkB;IAClB,eAAoB;IACpB,cAAoB;IAGtB;;;;OAIG;IACH,iBAHW,GAAG,GACD,+BAA+B,CAK3C;CACF;AAED;;;;GAIG;AACH;IACE;;;;OAIG;IACH,uBAHW,MAAM,eACN,MAAM,EAWhB;IARC,2CAGC;IACD,6CAGC;IAGH;;;;;OAKG;IACH,yBAJe,+BAA+B,EAAA,GAEjC,mCAAmC,CAU/C;IAED;;;;;;OAMG;IACH,gCAJW,MAAM,GAEJ,kBAAkB,CAiB9B;CACF;AAED;;GAEG;AACH;IA4dE;;;;;;OAMG;IACH,wBAJW,MAAM,GACJ,cAAc,CAmC1B;IAlgBD;;;;;;OAMG;IACH,oBAJG;QAAuB,aAAa,EAA5B,MAAM;QACS,IAAI,EAAnB,MAAM;QACmB,WAAW,EAApC,MAAM,GAAC,SAAS;KAC1B,kBAmCA;IAVC;;;;;;;;MAQC;IACD,kBAAgC;IAGlC;;;;;;;;OAQG;IACH,kBAPW,MAAM,gBACN,MAAM,YAEd;QAAwB,GAAG,EAAnB,MAAM;KAEd,GAAU,qBAAqB,CAWjC;IAED;;;;;;;;;;;;;;;;;;;OAmBG;IACH,iBAlBW,qBAAqB,aAErB,MAAM,WAEN,MAAM,GAAC,SAAS,GAYd,kBAAkB,CAoC9B;IAED;;;;;OAKG;IACH,yBAHc,MAAM,EAAA,GACP,+BAA+B,EAAE,CAkC7C;IAED;;;;OAIG;IACH,uBAFa,mCAAmC,CA4B/C;IAED;;;;;;;;;;;;OAYG;IACH,+BATW,MAAM,GAKJ,MAAM,CAuIlB;IAED;;;;;;;OAOG;IACH,iBANW,kBAAkB,EAAE,UACpB,MAAM,EAAE,YACR,GAAG,EAAE,GAEH,cAAc,CAe1B;IAED;;;;;;;;;;;;;;;OAeG;IACH,yBAbW,kBAAkB,EAAE,SACpB,MAAM,YAKN,MAAM,GAAC,IAAI,GAKT,cAAc,CAyB1B;IAED;;;;;;;;OAQG;IACH,4BALW,MAAM,UACN,MAAM,UACN,GAAG,GACD,+BAA+B,CAS3C;IAED;;;;;OAKG;IACH,mBAJW,kBAAkB,GAAC,yBAAyB,GAAC,yBAAyB,GAEpE,cAAc,CA0B1B;IAED;;;OAGG;IACH,UAFa,MAAM,CAmBlB;CA0CF;AAxnBD;IACE,wBAGC;IAFC,WAAkB;IAClB,iBAAuB;IAGzB,qCAEC;IAED,iBAEC;IAED,oBAEC;CACF"}
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@@ -14,12 +14,13 @@ export class VitessceConfigDatasetFile {
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* which may provide additional parameters to the loader class
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* corresponding to the specified fileType.
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*/
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constructor(url, fileType, coordinationValues, options) {
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constructor(url, fileType, coordinationValues, options, requestInit) {
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this.file = {
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url,
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fileType,
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...(coordinationValues ? { coordinationValues } : {}),
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...(options ? { options } : {}),
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...(requestInit ? { requestInit } : {}),
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};
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}
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/**
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@@ -63,6 +64,7 @@ export class VitessceConfigDataset {
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let fileType;
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let coordinationValues;
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let options;
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let requestInit;
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if (args.length > 0) {
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// Old behavior.
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url = params;
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@@ -78,13 +80,13 @@ export class VitessceConfigDataset {
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}
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else if (typeof params === 'object') {
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({
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url, fileType, options, coordinationValues,
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url, fileType, options, coordinationValues, requestInit,
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} = params);
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}
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else {
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throw new Error('Expected addFile argument to be an object.');
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}
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-
this.dataset.files.push(new VitessceConfigDatasetFile(url, fileType, coordinationValues, options));
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this.dataset.files.push(new VitessceConfigDatasetFile(url, fileType, coordinationValues, options, requestInit));
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return this;
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}
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/**
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@@ -533,13 +535,19 @@ export class VitessceConfig {
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* Add a new view to the config.
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* @param {VitessceConfigDataset} dataset The dataset instance which defines the data
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* that will be displayed in the view.
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-
* @param {string} component A component name, such as "scatterplot"
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-
*
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* @param {
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-
* @param {number} options.
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-
*
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-
* @param {number} options.
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-
*
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+
* @param {string} component A component name, such as "scatterplot"
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+
* or "spatial".
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540
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+
* @param {object|undefined} options Extra options for the component.
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541
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+
* @param {number|undefined} options.x The x-coordinate for the view
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542
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+
* in the grid layout.
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543
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+
* @param {number|undefined} options.y The y-coordinate for the view
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* in the grid layout.
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545
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+
* @param {number|undefined} options.w The width for the view in the
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+
* grid layout.
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+
* @param {number|undefined} options.h The height for the view in the
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+
* grid layout.
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+
* @param {string|undefined} options.mapping A convenience parameter
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+
* for setting the EMBEDDING_TYPE
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* coordination value. Only applicable if the component is "scatterplot".
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* @returns {VitessceConfigView} A new view instance.
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*/
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@@ -113,6 +113,50 @@ describe('src/api/VitessceConfig.js', () => {
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version: '1.0.4',
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});
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});
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+
it('can add a file with requestInit to a dataset', () => {
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const config = new VitessceConfig({
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schemaVersion: '1.0.4',
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name: 'My config',
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description: 'My config description',
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});
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// Named arguments.
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config.addDataset('My dataset', 'My dataset description').addFile({
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url: 'http://example.com/cells.json',
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fileType: 'cells.json',
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requestInit: {
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headers: {
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Authorization: 'Bearer my-token',
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},
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},
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});
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const configJSON = config.toJSON();
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expect(configJSON).toEqual({
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coordinationSpace: {
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dataset: {
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A: 'A',
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},
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},
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datasets: [{
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name: 'My dataset',
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description: 'My dataset description',
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uid: 'A',
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files: [{
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url: 'http://example.com/cells.json',
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fileType: 'cells.json',
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requestInit: {
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headers: {
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Authorization: 'Bearer my-token',
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},
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},
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}],
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}],
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description: 'My config description',
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initStrategy: 'auto',
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layout: [],
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name: 'My config',
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version: '1.0.4',
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});
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});
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it('can add a view', () => {
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const config = new VitessceConfig({
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schemaVersion: '1.0.4',
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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1
1
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{
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2
2
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"name": "@vitessce/config",
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3
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-
"version": "3.6.
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3
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+
"version": "3.6.12",
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"author": "HIDIVE Lab at HMS",
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5
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"homepage": "http://vitessce.io",
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6
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"repository": {
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@@ -17,10 +17,10 @@
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],
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"dependencies": {
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"zarrita": "0.5.2",
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-
"@vitessce/constants-internal": "3.6.
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-
"@vitessce/utils": "3.6.
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-
"@vitessce/globals": "3.6.
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"@vitessce/zarr-utils": "3.6.
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+
"@vitessce/constants-internal": "3.6.12",
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"@vitessce/utils": "3.6.12",
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"@vitessce/globals": "3.6.12",
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"@vitessce/zarr-utils": "3.6.12"
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},
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"scripts": {
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"bundle": "pnpm exec vite build -c ../../scripts/vite.config.js",
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package/src/VitessceConfig.js
CHANGED
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@@ -15,12 +15,13 @@ export class VitessceConfigDatasetFile {
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* which may provide additional parameters to the loader class
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* corresponding to the specified fileType.
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*/
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-
constructor(url, fileType, coordinationValues, options) {
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+
constructor(url, fileType, coordinationValues, options, requestInit) {
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this.file = {
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url,
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fileType,
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...(coordinationValues ? { coordinationValues } : {}),
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...(options ? { options } : {}),
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+
...(requestInit ? { requestInit } : {}),
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};
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}
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@@ -67,6 +68,7 @@ export class VitessceConfigDataset {
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67
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let fileType;
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68
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let coordinationValues;
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let options;
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71
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+
let requestInit;
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70
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if (args.length > 0) {
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// Old behavior.
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72
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url = params;
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@@ -80,13 +82,13 @@ export class VitessceConfigDataset {
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80
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}
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81
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} else if (typeof params === 'object') {
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82
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({
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83
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-
url, fileType, options, coordinationValues,
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85
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+
url, fileType, options, coordinationValues, requestInit,
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84
86
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} = params);
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85
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} else {
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86
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throw new Error('Expected addFile argument to be an object.');
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87
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}
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88
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this.dataset.files.push(
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89
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-
new VitessceConfigDatasetFile(url, fileType, coordinationValues, options),
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91
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+
new VitessceConfigDatasetFile(url, fileType, coordinationValues, options, requestInit),
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90
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);
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return this;
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}
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@@ -584,13 +586,19 @@ export class VitessceConfig {
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584
586
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* Add a new view to the config.
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585
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* @param {VitessceConfigDataset} dataset The dataset instance which defines the data
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586
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* that will be displayed in the view.
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587
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-
* @param {string} component A component name, such as "scatterplot"
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588
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-
*
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589
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-
* @param {
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590
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-
* @param {number} options.
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591
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-
*
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592
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-
* @param {number} options.
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593
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-
*
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589
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+
* @param {string} component A component name, such as "scatterplot"
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590
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* or "spatial".
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591
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* @param {object|undefined} options Extra options for the component.
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592
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* @param {number|undefined} options.x The x-coordinate for the view
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593
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* in the grid layout.
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594
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* @param {number|undefined} options.y The y-coordinate for the view
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595
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* in the grid layout.
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596
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* @param {number|undefined} options.w The width for the view in the
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597
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* grid layout.
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598
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* @param {number|undefined} options.h The height for the view in the
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599
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* grid layout.
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600
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* @param {string|undefined} options.mapping A convenience parameter
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601
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* for setting the EMBEDDING_TYPE
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594
602
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* coordination value. Only applicable if the component is "scatterplot".
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595
603
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* @returns {VitessceConfigView} A new view instance.
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596
604
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*/
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@@ -128,6 +128,51 @@ describe('src/api/VitessceConfig.js', () => {
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128
128
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version: '1.0.4',
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129
129
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});
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130
130
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});
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131
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+
it('can add a file with requestInit to a dataset', () => {
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132
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+
const config = new VitessceConfig({
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133
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+
schemaVersion: '1.0.4',
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134
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name: 'My config',
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135
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description: 'My config description',
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|
136
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+
});
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137
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+
// Named arguments.
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138
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+
config.addDataset('My dataset', 'My dataset description').addFile({
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139
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+
url: 'http://example.com/cells.json',
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140
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fileType: 'cells.json',
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141
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requestInit: {
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142
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headers: {
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143
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Authorization: 'Bearer my-token',
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144
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},
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145
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},
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146
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+
});
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|
147
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+
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|
148
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+
const configJSON = config.toJSON();
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|
149
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+
expect(configJSON).toEqual({
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|
150
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+
coordinationSpace: {
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|
151
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+
dataset: {
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152
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+
A: 'A',
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|
153
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+
},
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|
154
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+
},
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|
155
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+
datasets: [{
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156
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+
name: 'My dataset',
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157
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description: 'My dataset description',
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158
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uid: 'A',
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159
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+
files: [{
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|
160
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+
url: 'http://example.com/cells.json',
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161
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fileType: 'cells.json',
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162
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+
requestInit: {
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163
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+
headers: {
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164
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+
Authorization: 'Bearer my-token',
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165
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+
},
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166
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+
},
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167
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+
}],
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|
168
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+
}],
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169
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+
description: 'My config description',
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170
|
+
initStrategy: 'auto',
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171
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+
layout: [],
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172
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+
name: 'My config',
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173
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+
version: '1.0.4',
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174
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+
});
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175
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+
});
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131
176
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132
177
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it('can add a view', () => {
|
|
133
178
|
const config = new VitessceConfig({
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