@vitessce/all 4.0.0 → 4.0.1

package/dist/{GeometryAndMeshXR-DGeJ5ZBr.js → GeometryAndMeshXR-o1KV1S6m.js}

@@ -2,9 +2,9 @@ import { jsxs, jsx } from "react/jsx-runtime";
 import { useRef, useEffect, useState } from "react";
 import { useThree, useFrame } from "@react-three/fiber";
 import { Bvh } from "@react-three/drei";
-import { useXR, useXRInputSourceState } from "@react-three/xr";
 import { Matrix4, Vector3, Box3, FrontSide } from "three";
-import { i as isValidGeometrySize, M as MeasureLine, s as stringifyLineData } from "./index-tp3-aWWe.js";
+import { g as getXRModule, i as isValidGeometrySize, M as MeasureLine, s as stringifyLineData } from "./index-0nuepTVk.js";
+const { useXR, useXRInputSourceState } = getXRModule();
 function getHandJoint(hand, jointName) {
   return hand.get(jointName);
 }

package/dist/{ReactNeuroglancer-Do72MK3I.js → ReactNeuroglancer-BuXB_Emb.js}

@@ -1,6 +1,6 @@
 import { jsx, jsxs } from "react/jsx-runtime";
 import React__default from "react";
-import { a as getDefaultExportFromCjs, d as requireAssign, f as require_export, h as require_core, j as require_fails, k as require_toObject, m as require_objectKeys, n as require_cof, o as require_wks, p as require_iterators, q as requireWeb_dom_iterable, s as requireEs6_string_iterator, t as require_anObject, v as require_hide, w as require_ctx, x as require_toLength, y as require_global, z as require_objectDp, A as require_descriptors, D as require_isObject, E as require_objectCreate, F as require_iterDefine, G as require_iterStep, H as require_meta, I as require_isArray, J as require_iobject, K as require_setToStringTag, M as require_aFunction, N as requireIterator, O as require_propertyDesc, c as commonjsGlobal, P as requireEs6_symbol, Q as requireDefineProperty, R as require_toIobject, S as require_objectGopd, T as require_html, U as require_domCreate, V as require_library, W as requireSymbol, X as require_objectPie, Y as require_has, Z as require_redefine, _ as require_objectAssign, $ as diffCameraState } from "./index-GwbVVPa9.js";
+import { a as getDefaultExportFromCjs, d as requireAssign, f as require_export, h as require_core, j as require_fails, k as require_toObject, m as require_objectKeys, n as require_cof, o as require_wks, p as require_iterators, q as requireWeb_dom_iterable, s as requireEs6_string_iterator, t as require_anObject, v as require_hide, w as require_ctx, x as require_toLength, y as require_global, z as require_objectDp, A as require_descriptors, D as require_isObject, E as require_objectCreate, F as require_iterDefine, G as require_iterStep, H as require_meta, I as require_isArray, J as require_iobject, K as require_setToStringTag, M as require_aFunction, N as requireIterator, O as require_propertyDesc, c as commonjsGlobal, P as requireEs6_symbol, Q as requireDefineProperty, R as require_toIobject, S as require_objectGopd, T as require_html, U as require_domCreate, V as require_library, W as requireSymbol, X as require_objectPie, Y as require_has, Z as require_redefine, _ as require_objectAssign, $ as diffCameraState } from "./index-moreUHDf.js";
 var assignExports = requireAssign();
 const _Object$assign = /* @__PURE__ */ getDefaultExportFromCjs(assignExports);
 var es6_object_keys = {};

package/dist/{XREnterButton-vmEhdF4L.js → XREnterButton-DZUdn-IL.js}

@@ -1,6 +1,6 @@
 import { jsx } from "react/jsx-runtime";
 import { useState, useEffect } from "react";
-import { x as xrStore } from "./xrStore-BymedRtx.js";
+import { x as xrStore } from "./xrStore-gGt4Wkvz.js";
 function XREnterButton() {
   const [supported, setSupported] = useState(false);
   const [entered, setEntered] = useState(false);

package/dist/{XRSceneComponents-DnZLSAJz.js → XRSceneComponents-Cgrg-9p2.js}

@@ -1,7 +1,8 @@
 import { jsxs, Fragment, jsx } from "react/jsx-runtime";
 import { useRef } from "react";
-import { useXRInputSourceState, useXR } from "@react-three/xr";
 import { useThree, useFrame } from "@react-three/fiber";
+import { g as getXRModule } from "./index-0nuepTVk.js";
+const { useXRInputSourceState } = getXRModule();
 function getHandJoint(hand, jointName) {
   return hand.get(jointName);
 }
@@ -38,6 +39,7 @@ function HandBbox() {
   });
   return jsxs(Fragment, { children: [jsxs("mesh", { name: "leftTipBbox", ref: leftTipRef, children: [jsx("boxGeometry", { args: [0.02, 0.02, 0.02] }), jsx("meshStandardMaterial", { color: "blue", transparent: true, opacity: 0 })] }), jsxs("mesh", { name: "rightTipBbox", ref: rightTipRef, children: [jsx("boxGeometry", { args: [0.02, 0.02, 0.02] }), jsx("meshStandardMaterial", { color: "orange", transparent: true, opacity: 0 })] })] });
 }
+const { useXR } = getXRModule();
 function HandDecorate() {
   const session = useXR((state) => state.session);
   const { scene } = useThree();

package/dist/{XRWrapper-C94X82Mb.js → XRWrapper-BB28re-M.js}

@@ -1,6 +1,7 @@
 import { jsx } from "react/jsx-runtime";
-import { XR } from "@react-three/xr";
-import { x as xrStore } from "./xrStore-BymedRtx.js";
+import { g as getXRModule } from "./index-0nuepTVk.js";
+import { x as xrStore } from "./xrStore-gGt4Wkvz.js";
+const { XR } = getXRModule();
 function XRWrapper({ children }) {
   return jsx(XR, { store: xrStore, children });
 }

package/dist/{deflate-VdN3pn_b.js → deflate-E8TfyvM7.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { B as BaseDecoder } from "./index-GwbVVPa9.js";
+import { B as BaseDecoder } from "./index-moreUHDf.js";
 class DeflateDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return inflate_1(new Uint8Array(buffer)).buffer;

package/dist/{higlass-DL7cd1YR.js → higlass-CGhpbMxK.js}

@@ -1,6 +1,6 @@
 import * as React from "react";
 import React__default, { createContext, isValidElement, PureComponent, Component, useMemo, useState, useRef, useEffect, useCallback, memo, useContext, useReducer, useLayoutEffect } from "react";
-import { r as requireObjectAssign, a as getDefaultExportFromCjs$1, c as commonjsGlobal, e as earcut } from "./index-GwbVVPa9.js";
+import { r as requireObjectAssign, a as getDefaultExportFromCjs$1, c as commonjsGlobal, e as earcut } from "./index-moreUHDf.js";
 import ReactDOM__default, { unstable_batchedUpdates, createPortal } from "react-dom";
 import { jsx, jsxs } from "react/jsx-runtime";
 function finallyConstructor(callback) {

package/dist/{index-tp3-aWWe.js → index-0nuepTVk.js}

@@ -3,7 +3,7 @@ import React__default, { useRef, useState, useEffect, Suspense, forwardRef } fro
 import { Canvas } from "@react-three/fiber";
 import { Center, Text, Line, Bvh, OrbitControls } from "@react-three/drei";
 import { Matrix3, Matrix4, Vector3, Vector2, UniformsUtils, Data3DTexture, RedFormat, FloatType, LinearFilter, FrontSide, Scene, Group, MeshPhysicalMaterial, MeshBasicMaterial, MeshStandardMaterial, BackSide } from "three";
-import { C as CoordinationType, g as getImageSize } from "./index-GwbVVPa9.js";
+import { C as CoordinationType, g as getImageSize } from "./index-moreUHDf.js";
 function MeasureLine({ currentLine, scale }) {
   const textRef = useRef(null);
   return jsxs("group", { children: [jsx(Center, { bottom: true, right: true, position: [currentLine.midPoint.x, currentLine.midPoint.y, currentLine.midPoint.z], rotation: [0, 0, 0], children: jsx(Text, { color: "gray", scale: 0.05, ref: textRef, children: `${(currentLine.startPoint.distanceTo(currentLine.endPoint) * scale).toFixed(2)} µm` }) }), jsx(Line, {
@@ -944,8 +944,8 @@ function GeometryAndMesh(props) {
     setObsHighlight(e.object.name);
   }, onPointerOut: () => setObsHighlight(null) }) })] }) : null, renderingSettings.uniforms && renderingSettings.shader && renderingSettings.meshScale && renderingSettings.geometrySize ? jsx("group", { children: jsxs("mesh", { scale: renderingSettings.meshScale, ref: materialRef, children: [jsx("boxGeometry", { args: renderingSettings.geometrySize }), jsx("shaderMaterial", { customProgramCacheKey: () => "1", side: FrontSide, uniforms: renderingSettings.uniforms, needsUpdate: true, transparent: true, vertexShader: renderingSettings.shader.vertexShader, fragmentShader: renderingSettings.shader.fragmentShader })] }) }) : null] }), jsx("group", { name: "lines", children: lines.map((object) => jsx(MeasureLine, { currentLine: object, scale: 1 }, stringifyLineData(object))) })] });
 }
-const LazyGeometryAndMeshXR = React__default.lazy(() => import("./GeometryAndMeshXR-DGeJ5ZBr.js").catch(() => ({ default: GeometryAndMesh })));
-const LazyXRSceneComponents = React__default.lazy(() => import("./XRSceneComponents-DnZLSAJz.js").catch(() => ({ default: () => null })));
+const LazyGeometryAndMeshXR = React__default.lazy(() => import("./GeometryAndMeshXR-o1KV1S6m.js").catch(() => ({ default: GeometryAndMesh })));
+const LazyXRSceneComponents = React__default.lazy(() => import("./XRSceneComponents-Cgrg-9p2.js").catch(() => ({ default: () => null })));
 function SpatialThree(props) {
   const materialRef = useRef(null);
   const orbitRef = useRef(null);
@@ -1289,22 +1289,33 @@ function SpatialThree(props) {
   const { xrEnabled } = props;
   return jsxs("group", { children: [xrEnabled ? jsxs(Fragment, { children: [jsx(Suspense, { fallback: null, children: jsx(LazyXRSceneComponents, {}) }), jsx(Suspense, { fallback: jsx(GeometryAndMesh, { ...geometryAndMeshProps }), children: jsx(LazyGeometryAndMeshXR, { ...geometryAndMeshProps }) })] }) : jsx(GeometryAndMesh, { ...geometryAndMeshProps }), jsx(OrbitControls, { ref: orbitRef, enableDamping: false, dampingFactor: 0 })] });
 }
+let xrModule = null;
+async function loadXRModule() {
+  xrModule = await import("@react-three/xr");
+  return xrModule;
+}
+function getXRModule() {
+  if (!xrModule) {
+    throw new Error("@react-three/xr is not loaded; call loadXRModule() first.");
+  }
+  return xrModule;
+}
 const LazyXRWrapper = React__default.lazy(
   // eslint-disable-next-line implicit-arrow-linebreak, function-paren-newline
-  () => import("./XRWrapper-C94X82Mb.js").catch(() => ({
+  () => import("./XRWrapper-BB28re-M.js").catch(() => ({
     default: ({ children }) => children
   }))
 );
 const LazyXREnterButton = React__default.lazy(
   // eslint-disable-next-line implicit-arrow-linebreak, function-paren-newline
-  () => import("./XREnterButton-vmEhdF4L.js").catch(() => ({
+  () => import("./XREnterButton-DZUdn-IL.js").catch(() => ({
     default: () => null
   }))
 );
 const SpatialWrapper = forwardRef((props, canvasRef) => {
   const [xrAvailable, setXrAvailable] = useState(false);
   useEffect(() => {
-    import("@react-three/xr").then(() => setXrAvailable(true)).catch(() => {
+    loadXRModule().then(() => setXrAvailable(true)).catch(() => {
     });
   }, []);
   return jsxs("div", { style: { width: "100%", height: "100%" }, children: [xrAvailable && jsx(Suspense, { fallback: null, children: jsx(LazyXREnterButton, {}) }), jsx(Canvas, { style: { position: "absolute", top: 0, left: 0 }, camera: {
@@ -1322,6 +1333,7 @@ const index = /* @__PURE__ */ Object.freeze(/* @__PURE__ */ Object.definePropert
 export {
   MeasureLine as M,
   index as a,
+  getXRModule as g,
   isValidGeometrySize as i,
   stringifyLineData as s
 };

package/dist/{index-Dau2mo3I.js → index-BHE3zASA.js}

@@ -4,7 +4,7 @@ import { useThree, useFrame, Canvas } from "@react-three/fiber";
 import { OrbitControls } from "@react-three/drei";
 import * as THREE from "three";
 import { Data3DTexture, RedFormat, UnsignedByteType, LinearFilter, RedIntegerFormat, UnsignedIntType, NearestFilter, Vector3, Vector2, Vector4, UniformsUtils } from "three";
-import { l as log, i as isEqual, C as CoordinationType, u as useEventCallback } from "./index-GwbVVPa9.js";
+import { l as log, i as isEqual, C as CoordinationType, u as useEventCallback } from "./index-moreUHDf.js";
 const LogLevel = {
   INFO: "info",
   WARN: "warn",

package/dist/{index-GwbVVPa9.js → index-moreUHDf.js}

@@ -9436,6 +9436,7 @@ const CoordinationType$1 = {
   SPATIAL_CHANNEL_LABELS_VISIBLE: "spatialChannelLabelsVisible",
   SPATIAL_CHANNEL_LABELS_ORIENTATION: "spatialChannelLabelsOrientation",
   SPATIAL_CHANNEL_LABEL_SIZE: "spatialChannelLabelSize",
+  SPATIAL_CHANNELS_SORT_ORDER: "spatialChannelsSortOrder",
   // Multi-sample / comparative
   SAMPLE_TYPE: "sampleType",
   SAMPLE_SELECTION: "sampleSelection",
@@ -9488,7 +9489,9 @@ const ViewHelpMapping = {
   OBS_SET_COMPOSITION_BAR_PLOT: "The set composition bar plot displays the results of a compositional analysis conducted using the scCODA method (Büttner et al. 2021 Nature Communications).",
   FEATURE_SET_ENRICHMENT_BAR_PLOT: "The feature set enrichment bar plot displays the results of a hypergeometric test applied to the differential expression test results to identify enriched pathway gene sets.",
   SAMPLE_SET_PAIR_MANAGER: "Select pairs of sample groups.",
-  FEATURE_STATS_TABLE: "This table displays per-feature statistics, for example, from a differential expression test."
+  FEATURE_STATS_TABLE: "This table displays per-feature statistics, for example, from a differential expression test.",
+  LAYER_CONTROLLER_BETA: "The spatial layer controller provides an interface for manipulating the visualization layers displayed in the spatial view.",
+  SPATIAL_BETA: "The spatial view displays (potentially layered) spatially-resolved data including RGB or multiplexed images, segmentations of observations (bitmask- or polygon-based), and/or points (e.g., representing FISH transcripts)."
 };
 ({
   // For new file types
@@ -10039,6 +10042,7 @@ const COMPONENT_COORDINATION_TYPES = {
     CoordinationType$1.SPATIAL_CHANNEL_LABELS_VISIBLE,
     CoordinationType$1.SPATIAL_CHANNEL_LABELS_ORIENTATION,
     CoordinationType$1.SPATIAL_CHANNEL_LABEL_SIZE,
+    CoordinationType$1.SPATIAL_CHANNELS_SORT_ORDER,
     CoordinationType$1.PHOTOMETRIC_INTERPRETATION
   ],
   [ViewType$1.HEATMAP]: [
@@ -10220,7 +10224,8 @@ const COMPONENT_COORDINATION_TYPES = {
     CoordinationType$1.LEGEND_VISIBLE,
     CoordinationType$1.SPATIAL_CHANNEL_LABELS_VISIBLE,
     CoordinationType$1.SPATIAL_CHANNEL_LABELS_ORIENTATION,
-    CoordinationType$1.SPATIAL_CHANNEL_LABEL_SIZE
+    CoordinationType$1.SPATIAL_CHANNEL_LABEL_SIZE,
+    CoordinationType$1.SPATIAL_CHANNELS_SORT_ORDER
   ],
   [ViewType$1.GENOMIC_PROFILES]: [
     CoordinationType$1.DATASET,
@@ -209460,22 +209465,22 @@ async function getDecoder(fileDirectory) {
   const Decoder = await importFn();
   return new Decoder(fileDirectory);
 }
-addDecoder([void 0, 1], () => import("./raw-BX1y7Iy_.js").then((m2) => m2.default));
-addDecoder(5, () => import("./lzw-DJhX6Tr-.js").then((m2) => m2.default));
+addDecoder([void 0, 1], () => import("./raw-BLQKlp_4.js").then((m2) => m2.default));
+addDecoder(5, () => import("./lzw-hla-j59h.js").then((m2) => m2.default));
 addDecoder(6, () => {
   throw new Error("old style JPEG compression is not supported.");
 });
-addDecoder(7, () => import("./jpeg-CYgQz5aG.js").then((m2) => m2.default));
-addDecoder([8, 32946], () => import("./deflate-VdN3pn_b.js").then((m2) => m2.default));
-addDecoder(32773, () => import("./packbits-BOwAxrqR.js").then((m2) => m2.default));
+addDecoder(7, () => import("./jpeg-_87xUwY6.js").then((m2) => m2.default));
+addDecoder([8, 32946], () => import("./deflate-E8TfyvM7.js").then((m2) => m2.default));
+addDecoder(32773, () => import("./packbits-C8umOnfG.js").then((m2) => m2.default));
 addDecoder(
   34887,
-  () => import("./lerc-C-Llf71G.js").then(async (m2) => {
+  () => import("./lerc-DFl9HcRa.js").then(async (m2) => {
     await m2.zstd.init();
     return m2;
   }).then((m2) => m2.default)
 );
-addDecoder(50001, () => import("./webimage-DCU5-f3Q.js").then((m2) => m2.default));
+addDecoder(50001, () => import("./webimage-nk5eMN68.js").then((m2) => m2.default));
 function copyNewSize(array2, width2, height2, samplesPerPixel = 1) {
   return new (Object.getPrototypeOf(array2)).constructor(width2 * height2 * samplesPerPixel);
 }
@@ -226331,7 +226336,7 @@ function ToolMenu(props) {
   return jsxs("div", { className: classes2.tool, children: [visibleTools.pan && jsx$1(IconTool, { alt: pointerIconAltText, onClick: () => setActiveTool(null), isActive: activeTool === null, children: jsx$1(SvgNearMe, {}) }), visibleTools.selectLasso ? jsx$1(IconTool, { alt: lassoIconAltText, onClick: () => setActiveTool(distEs6Exports$2.SELECTION_TYPE.POLYGON), isActive: activeTool === distEs6Exports$2.SELECTION_TYPE.POLYGON, children: jsx$1(SvgSelectionLasso, {}) }) : null, visibleTools.recenter ? jsx$1(IconButton, { alt: "click to recenter", onClick: () => onRecenterButtonCLick(), "aria-label": "Recenter scatterplot view", children: jsx$1(CenterFocusStrong, {}) }) : null] });
 }
 const getCursorWithTool = () => "crosshair";
-const getCursor = (interactionState) => interactionState.isDragging ? "grabbing" : "default";
+const getCursor = (interactionState) => interactionState.isDragging ? "grabbing" : "grab";
 function getOnHoverCallback(obsIndex, setObsHighlight, setComponentHover) {
   return (info2) => {
     if (setComponentHover) {
@@ -253983,12 +253988,12 @@ class ErrorBoundary extends React__default.Component {
   }
 }
 const LazySpatialThree = React__default.lazy(async () => {
-  const { SpatialWrapper: SpatialWrapper2 } = await import("./index-tp3-aWWe.js").then((n3) => n3.a);
+  const { SpatialWrapper: SpatialWrapper2 } = await import("./index-0nuepTVk.js").then((n3) => n3.a);
   return { default: SpatialWrapper2 };
 });
 const SpatialThreeAdapter = React__default.forwardRef((props, ref2) => jsx$1("div", { ref: ref2, style: { width: "100%", height: "100%" }, children: jsx$1(ErrorBoundary, { fallback: jsx$1("div", { children: "3D spatial view is not available in this environment." }), children: jsx$1(Suspense, { fallback: jsx$1("div", { children: "Loading..." }), children: jsx$1(LazySpatialThree, { ...props }) }) }) }));
 const LazySpatialAccelerated = React__default.lazy(async () => {
-  const { SpatialWrapper: SpatialWrapper2 } = await import("./index-Dau2mo3I.js");
+  const { SpatialWrapper: SpatialWrapper2 } = await import("./index-BHE3zASA.js");
   return { default: SpatialWrapper2 };
 });
 const SpatialAcceleratedAdapter = React__default.forwardRef((props, ref2) => jsx$1("div", { ref: ref2, style: { width: "100%", height: "100%" }, children: jsx$1(ErrorBoundary, { fallback: jsx$1("div", { children: "3D spatial view is not available in this environment." }), children: jsx$1(Suspense, { fallback: jsx$1("div", { children: "Loading..." }), children: jsx$1(LazySpatialAccelerated, { ...props }) }) }) }));
@@ -254165,7 +254170,8 @@ function SpatialSubscriber(props) {
     bitmaskValueIsIndex = false,
     // TODO: move to coordination type
     three: threeFor3d = false,
-    accelerated: acceleratedFor3d = false
+    accelerated: acceleratedFor3d = false,
+    helpText = ViewHelpMapping.SPATIAL_BETA
   } = props;
   const loaders = useLoaders();
   const setComponentHover = useSetComponentHover();
@@ -254609,7 +254615,7 @@ function SpatialSubscriber(props) {
       }
     }
   };
-  return jsxs(TitleInfo, { title: title2, info: subtitle, isSpatial: true, urls: urls2, theme, closeButtonVisible, downloadButtonVisible, removeGridComponent, isReady, errors, children: [shouldUseThree ? acceleratedFor3d ? jsx$1(SpatialAcceleratedAdapter, { ref: threeRef, uuid: uuid2, width: width2, height: height2, theme, hideTools: !isSelectable, rotation: [rotationX, rotationY, rotationZ], setRotationX, setRotationY, setRotationZ, targetT, targetZ, viewState: isValidViewState ? {
+  return jsxs(TitleInfo, { title: title2, info: subtitle, isSpatial: true, urls: urls2, theme, closeButtonVisible, downloadButtonVisible, removeGridComponent, isReady, errors, helpText, children: [shouldUseThree ? acceleratedFor3d ? jsx$1(SpatialAcceleratedAdapter, { ref: threeRef, uuid: uuid2, width: width2, height: height2, theme, hideTools: !isSelectable, rotation: [rotationX, rotationY, rotationZ], setRotationX, setRotationY, setRotationZ, targetT, targetZ, viewState: isValidViewState ? {
     zoom: zoom2,
     target: [targetX2, targetY2, targetZ],
     rotationX,
@@ -262312,7 +262318,7 @@ function FeatureListOptions(props) {
   const { classes: classes2 } = usePlotOptionsStyles();
   return jsxs(OptionsContainer, { children: [children3, jsxs(TableRow, { children: [jsx$1(TableCell, { className: classes2.labelCell, variant: "head", scope: "row", children: jsx$1("label", { htmlFor: `feature-list-sort-option-${featureListId}`, children: "Sort Ordering" }) }), jsx$1(TableCell, { variant: "body", children: jsx$1(OptionSelect, { className: classes2.select, value: featureListSort, onChange: handleFeatureListSortChange, inputProps: {
     id: `feature-list-sort-option-${featureListId}`
-  }, children: FEATURELIST_SORT_OPTIONS.map((option) => jsx$1("option", { value: option, children: option }, option)) }) })] }), hasFeatureLabels ? jsxs(Fragment, { children: [jsxs(TableRow, { children: [jsx$1(TableCell, { className: classes2.labelCell, variant: "head", scope: "row", children: jsx$1("label", { htmlFor: `feature-list-sort-key-${featureListId}`, children: "Sort Key" }) }), jsx$1(TableCell, { variant: "body", children: jsx$1(OptionSelect, { className: classes2.select, disabled: featureListSort === "original", value: featureListSortKey, onChange: handleFeatureListSortKeyChange, inputProps: {
+  }, children: FEATURELIST_SORT_OPTIONS.map((option) => jsx$1("option", { value: option, children: capitalize$3(option) }, option)) }) })] }), hasFeatureLabels ? jsxs(Fragment, { children: [jsxs(TableRow, { children: [jsx$1(TableCell, { className: classes2.labelCell, variant: "head", scope: "row", children: jsx$1("label", { htmlFor: `feature-list-sort-key-${featureListId}`, children: "Sort Key" }) }), jsx$1(TableCell, { variant: "body", children: jsx$1(OptionSelect, { className: classes2.select, disabled: featureListSort === "original", value: featureListSortKey, onChange: handleFeatureListSortKeyChange, inputProps: {
     "aria-label": "Select the feature list sort key",
     id: `feature-list-sort-key-${featureListId}`
   }, children: hasFeatureLabels ? jsxs(Fragment, { children: [jsx$1("option", { value: "featureLabels", children: primaryColumnName }), jsx$1("option", { value: "featureIndex", children: ALT_COLNAME })] }) : jsx$1("option", { value: "featureIndex", children: primaryColumnName }) }) })] }), jsxs(TableRow, { children: [jsx$1(TableCell, { className: classes2.labelCell, variant: "head", scope: "row", children: jsx$1("label", { htmlFor: `feature-list-show-alternative-ids-${featureListId}`, children: "Show Alternate IDs" }) }), jsx$1(TableCell, { className: classes2.inputCell, variant: "body", children: jsx$1(Checkbox$1, { className: classes2.tableCheckbox, checked: showFeatureTable, onChange: handleShowTableChange, name: "feature-list-show-table", color: "default", slotProps: { input: {
@@ -265163,17 +265169,23 @@ const useStyles$9 = makeStyles()(() => ({
   }
 }));
 function ChannelSelectionDropdown(props) {
-  const { featureIndex, targetC, setTargetC, setWindow: setWindow2, disabled } = props;
+  const { featureIndex, channelsSortOrder, targetC, setTargetC, setWindow: setWindow2, disabled } = props;
   const { classes: classes2 } = useStyles$9();
   const { classes: selectClasses2 } = useSelectStyles();
   function handleChange(event2) {
     setTargetC(event2.target.value === "" ? null : Number(event2.target.value));
     setWindow2(null);
   }
-  return Array.isArray(featureIndex) ? jsx$1(NativeSelect, { classes: { root: selectClasses2.selectRoot }, className: classes2.oneLineChannelSelect, value: targetC === null ? "" : targetC, onChange: handleChange, inputProps: { "aria-label": "Channel selector" }, children: featureIndex.map((channelName, channelIndex) => (
-    // eslint-disable-next-line react/no-array-index-key
-    jsx$1("option", { disabled, value: channelIndex, children: channelName }, `${channelName}-${channelIndex}`)
-  )) }) : null;
+  const sortedOptions = useMemo$1(() => {
+    if (!Array.isArray(featureIndex))
+      return [];
+    const options = featureIndex.map((channelName, channelIndex) => ({ channelName, channelIndex }));
+    if (channelsSortOrder === "alphabetical") {
+      return options.sort((a2, b2) => a2.channelName.localeCompare(b2.channelName, void 0, { numeric: true, sensitivity: "base" }));
+    }
+    return options;
+  }, [featureIndex, channelsSortOrder]);
+  return Array.isArray(featureIndex) ? jsx$1(NativeSelect, { classes: { root: selectClasses2.selectRoot }, className: classes2.oneLineChannelSelect, value: targetC === null ? "" : targetC, onChange: handleChange, inputProps: { "aria-label": "Channel selector" }, children: sortedOptions.map(({ channelName, channelIndex }) => jsx$1("option", { disabled, value: channelIndex, children: channelName }, `${channelName}-${channelIndex}`)) }) : null;
 }
 function ImageChannelController(props) {
   const {
@@ -265201,7 +265213,8 @@ function ImageChannelController(props) {
     spatialRenderingMode,
     numResolutions,
     spatialMaxResolution,
-    setSpatialMaxResolution
+    setSpatialMaxResolution,
+    channelsSortOrder
   } = props;
   const removeChannel = useRemoveImageChannelInMetaCoordinationScopes();
   const [showValueExtent, setShowValueExtent] = useState(true);
@@ -265238,7 +265251,7 @@ function ImageChannelController(props) {
       setWindow2(minMaxDomain);
     }
   }
-  return jsxs(Grid$1, { container: true, direction: "row", justifyContent: "space-between", children: [jsx$1(Grid$1, { size: 1, children: jsx$1(ChannelVisibilityCheckbox, { color: color2, setColor: setColor2, visible, setVisible, disabled: isLoading, theme, colormapOn }) }), jsx$1(Grid$1, { size: 1, children: jsx$1(ChannelColorPickerMenu, { color: color2, setColor: setColor2, visible, setVisible, disabled: isLoading, theme, isStaticColor: !colormapOn, palette: VIEWER_PALETTE }) }), jsx$1(Grid$1, { size: 6, children: jsx$1(ChannelSelectionDropdown, { featureIndex, targetC, setTargetC, setWindow: setWindow2, disabled: isLoading }) }), jsx$1(Grid$1, { size: 3, children: jsx$1(ChannelSlider, { image: image2, targetT, targetZ, targetC, window: window2, setWindow: setWindow2, disabled, color: color2, theme, colormapOn, showValueExtent, minMaxDomain }) }), jsx$1(Grid$1, { size: 1, children: jsx$1(ChannelOptions, { onRemove: onRemove2, showValueExtent, setShowValueExtent, onResetWindowUsingIQR: handleResetWindowUsingIQR, numResolutions, spatialMaxResolution, setSpatialMaxResolution }) })] });
+  return jsxs(Grid$1, { container: true, direction: "row", justifyContent: "space-between", children: [jsx$1(Grid$1, { size: 1, children: jsx$1(ChannelVisibilityCheckbox, { color: color2, setColor: setColor2, visible, setVisible, disabled: isLoading, theme, colormapOn }) }), jsx$1(Grid$1, { size: 1, children: jsx$1(ChannelColorPickerMenu, { color: color2, setColor: setColor2, visible, setVisible, disabled: isLoading, theme, isStaticColor: !colormapOn, palette: VIEWER_PALETTE }) }), jsx$1(Grid$1, { size: 6, children: jsx$1(ChannelSelectionDropdown, { featureIndex, targetC, setTargetC, setWindow: setWindow2, disabled: isLoading, channelsSortOrder }) }), jsx$1(Grid$1, { size: 3, children: jsx$1(ChannelSlider, { image: image2, targetT, targetZ, targetC, window: window2, setWindow: setWindow2, disabled, color: color2, theme, colormapOn, showValueExtent, minMaxDomain }) }), jsx$1(Grid$1, { size: 1, children: jsx$1(ChannelOptions, { onRemove: onRemove2, showValueExtent, setShowValueExtent, onResetWindowUsingIQR: handleResetWindowUsingIQR, numResolutions, spatialMaxResolution, setSpatialMaxResolution }) })] });
 }
 function DimensionSlider(props) {
   const { boundingSlice, sliceValue, setSliceValue, label: label2 } = props;
@@ -265337,7 +265350,7 @@ const lodSliderRangeConfig = {
   step: 1
 };
 function ImageLayerEllipsisMenu(props) {
-  const { colormap, setColormap, photometricInterpretation, setPhotometricInterpretation, spatialTargetResolution, setSpatialTargetResolution, spatialLodFactor, setSpatialLodFactor, volumetricRenderingAlgorithm, setVolumetricRenderingAlgorithm, spatialLayerTransparentColor, setSpatialLayerTransparentColor, spatialRenderingMode, image: image2, channelScopes, tooltipsVisible, setTooltipsVisible, channelLabelsVisible, setChannelLabelsVisible, channelLabelsOrientation, setChannelLabelsOrientation, channelLabelSize, setChannelLabelSize } = props;
+  const { colormap, setColormap, photometricInterpretation, setPhotometricInterpretation, spatialTargetResolution, setSpatialTargetResolution, spatialLodFactor, setSpatialLodFactor, volumetricRenderingAlgorithm, setVolumetricRenderingAlgorithm, spatialLayerTransparentColor, setSpatialLayerTransparentColor, spatialRenderingMode, image: image2, channelScopes, tooltipsVisible, setTooltipsVisible, channelLabelsVisible, setChannelLabelsVisible, channelLabelsOrientation, setChannelLabelsOrientation, channelLabelSize, setChannelLabelSize, channelsSortOrder, setChannelsSortOrder } = props;
   const [open2, setOpen] = useState(false);
   const { classes: selectClasses2 } = useSelectStyles();
   const { classes: menuClasses } = useEllipsisMenuStyles();
@@ -265363,6 +265376,9 @@ function ImageLayerEllipsisMenu(props) {
   function handleChannelLabelsOrientationChange(event2) {
     setChannelLabelsOrientation(event2.target.value);
   }
+  function handleChannelsSortOrderChange(event2) {
+    setChannelsSortOrder(event2.target.value);
+  }
   function handleLodFactorChange(event2, value2) {
     setLocalLodSliderValue(value2);
   }
@@ -265384,11 +265400,12 @@ function ImageLayerEllipsisMenu(props) {
   const channelLabelsOrientationId = $bdb11010cef70236$export$f680877a34711e37();
   const channelLabelSizeId = $bdb11010cef70236$export$f680877a34711e37();
   const lodFactorId = $bdb11010cef70236$export$f680877a34711e37();
+  const channelsSortOrderId = $bdb11010cef70236$export$f680877a34711e37();
   return jsxs(PopperMenu, { open: open2, setOpen, buttonIcon: jsx$1(MoreVertIcon, {}), buttonClassName: menuClasses.imageLayerMenuButton, containerClassName: menuClasses.imageLayerPopperContainer, withPaper: true, "aria-label": "Open image layer options menu", children: [is3dMode && jsxs(MenuItem, { dense: true, disableGutters: true, className: menuClasses.menuItem, children: [jsx$1("label", { id: `${lodFactorId}-label`, className: menuClasses.imageLayerMenuLabel, htmlFor: lodFactorId, children: "LOD Factor: " }), jsx$1(Slider, { disabled: !is3dMode, value: localLodSliderValue, onChange: handleLodFactorChange, onChangeCommitted: handleLodFactorChangeCommitted, className: menuClasses.menuItemSlider, orientation: "horizontal", id: lodFactorId, "aria-label": "Level of detail factor slider", valueLabelDisplay: "off", ...lodSliderRangeConfig }), jsx$1(Box, { px: 1 }), jsx$1(Input$1, { value: localLodSliderValue, onChange: handleLodFactorInputChange, onBlur: handleLodFactorInputChange, "aria-labelledby": `${lodFactorId}-label`, size: "small", sx: { width: "6ch", flexShrink: 0, fontVariantNumeric: "tabular-nums" }, endAdornment: jsx$1(InputAdornment$1, { position: "end", variant: "standard", sx: { "& > p": { marginBottom: 0 } }, children: "%" }), inputProps: {
     ...lodSliderRangeConfig,
     inputMode: "numeric",
     pattern: "[0-9]*"
-  } })] }), jsxs(MenuItem, { dense: true, disableGutters: true, classes: menuClasses.menuItem, children: [jsx$1("label", { className: menuClasses.imageLayerMenuLabel, htmlFor: colormapId, children: "Colormap: " }), jsxs(NativeSelect, { disabled: photometricInterpretation === "RGB", onChange: handleColormapChange, value: colormap === null ? "" : colormap, inputProps: { id: colormapId, "aria-label": "Colormap selector" }, classes: { root: selectClasses2.selectRoot }, children: [jsx$1("option", { "aria-label": "None", value: "", children: "None" }), COLORMAP_OPTIONS.map((name2) => jsx$1("option", { value: name2, children: name2 }, name2))] })] }), jsxs(MenuItem, { dense: true, disableGutters: true, classes: menuClasses.menuItem, children: [jsx$1("label", { className: menuClasses.imageLayerMenuLabel, htmlFor: interpretationId, children: "Photometric Interpretation: " }), jsxs(NativeSelect, { onChange: handleInterpretationChange, value: photometricInterpretation, inputProps: { id: interpretationId, "aria-label": "Photometric interpretation selector" }, classes: { root: selectClasses2.selectRoot }, children: [jsx$1("option", { "aria-label": "RGB", value: "RGB", children: "RGB" }), channelScopes.length > 0 ? jsx$1("option", { "aria-label": "BlackIsZero", value: "BlackIsZero", children: "BlackIsZero" }) : null] })] }), jsxs(MenuItem, { dense: true, disableGutters: true, classes: menuClasses.menuItem, children: [jsx$1("label", { className: menuClasses.imageLayerMenuLabel, htmlFor: transparentId, children: "Zero Transparent: " }), jsx$1(Checkbox$1, { color: "primary", checked: spatialLayerTransparentColor !== null, onChange: (e3, v) => setSpatialLayerTransparentColor(v ? [0, 0, 0] : null), slotProps: { input: { id: transparentId, "aria-label": "Render zero-value pixels as transparent" } } })] }), jsxs(MenuItem, { dense: true, disableGutters: true, classes: menuClasses.menuItem, children: [jsx$1("label", { className: menuClasses.imageLayerMenuLabel, htmlFor: volumetricId, children: "Volumetric Rendering: " }), jsxs(NativeSelect, { onChange: handleVolumetricChange, value: volumetricRenderingAlgorithm, inputProps: { id: volumetricId, "aria-label": "Volumetric rendering algorithm selector" }, classes: { root: selectClasses2.selectRoot }, disabled: !is3dMode, children: [jsx$1("option", { "aria-label": "Additive", value: "additive", children: "Additive" }), jsx$1("option", { "aria-label": "Maximum Intensity Projection", value: "maximumIntensityProjection", children: "Maximum Intensity Projection" })] })] }), jsxs(MenuItem, { dense: true, disableGutters: true, children: [jsx$1("label", { className: menuClasses.imageLayerMenuLabel, htmlFor: resolutionId, children: "Volume Resolution: " }), jsxs(NativeSelect, { disabled: !is3dMode || !isMultiResolution, onChange: handleResolutionChange, value: spatialTargetResolution === null ? "auto" : spatialTargetResolution, inputProps: { id: resolutionId, "aria-label": "Volumetric resolution selector" }, classes: { root: selectClasses2.selectRoot }, children: [jsx$1("option", { value: "auto", children: "Auto" }), Array.isArray(multiResolutionStats) ? multiResolutionStats.map((stats, resolution) => stats.canLoad ? jsx$1("option", { value: resolution, children: `3D: ${resolution}x Downsampled, ~${formatBytes(stats.totalBytes)} per channel, (${stats.height}, ${stats.width}, ${stats.depthDownsampled})` }, `(${stats.height}, ${stats.width}, ${stats.depthDownsampled})`) : null) : null] })] }), jsxs(MenuItem, { dense: true, disableGutters: true, classes: menuClasses.menuItem, children: [jsx$1("label", { className: menuClasses.imageLayerMenuLabel, htmlFor: tooltipsVisibleId, children: "Tooltips Visible: " }), jsx$1(Checkbox$1, { color: "primary", checked: tooltipsVisible, onChange: (e3, v) => setTooltipsVisible(v), slotProps: { input: { id: tooltipsVisibleId, "aria-label": "Render pixel value tooltips" } } })] }), jsxs(MenuItem, { dense: true, disableGutters: true, classes: menuClasses.menuItem, children: [jsx$1("label", { className: menuClasses.imageLayerMenuLabel, htmlFor: channelLabelsVisibleId, children: "Channel Labels Visible: " }), jsx$1(Checkbox$1, { disabled: photometricInterpretation === "RGB", color: "primary", checked: channelLabelsVisible, onChange: (e3, v) => setChannelLabelsVisible(v), slotProps: { input: { id: channelLabelsVisibleId, "aria-label": "Render channel labels" } } })] }), jsxs(MenuItem, { dense: true, disableGutters: true, classes: menuClasses.menuItem, children: [jsx$1("label", { className: menuClasses.imageLayerMenuLabel, htmlFor: channelLabelsOrientationId, children: "Channel Labels Orientation: " }), jsxs(NativeSelect, { disabled: photometricInterpretation === "RGB", onChange: handleChannelLabelsOrientationChange, value: channelLabelsOrientation, inputProps: { id: channelLabelsOrientationId, "aria-label": "Channel labels orientation selector" }, classes: { root: selectClasses2.selectRoot }, children: [jsx$1("option", { "aria-label": "Vertical", value: "vertical", children: "Vertical" }), jsx$1("option", { "aria-label": "Horizontal", value: "horizontal", children: "Horizontal" })] })] }), jsxs(MenuItem, { dense: true, disableGutters: true, classes: menuClasses.menuItem, children: [jsx$1("label", { className: menuClasses.imageLayerMenuLabel, htmlFor: channelLabelSizeId, children: "Channel Labels Size: " }), jsx$1(Slider, { disabled: photometricInterpretation === "RGB", value: channelLabelSize, min: 8, max: 36, step: 1, onChange: (e3, v) => setChannelLabelSize(v), className: menuClasses.menuItemSlider, orientation: "horizontal", id: channelLabelSizeId, "aria-label": "Channel labels text size slider" })] })] });
+  } })] }), jsxs(MenuItem, { dense: true, disableGutters: true, classes: menuClasses.menuItem, children: [jsx$1("label", { className: menuClasses.imageLayerMenuLabel, htmlFor: colormapId, children: "Colormap: " }), jsxs(NativeSelect, { disabled: photometricInterpretation === "RGB", onChange: handleColormapChange, value: colormap === null ? "" : colormap, inputProps: { id: colormapId, "aria-label": "Colormap selector" }, classes: { root: selectClasses2.selectRoot }, children: [jsx$1("option", { "aria-label": "None", value: "", children: "None" }), COLORMAP_OPTIONS.map((name2) => jsx$1("option", { value: name2, children: name2 }, name2))] })] }), jsxs(MenuItem, { dense: true, disableGutters: true, classes: menuClasses.menuItem, children: [jsx$1("label", { className: menuClasses.imageLayerMenuLabel, htmlFor: interpretationId, children: "Photometric Interpretation: " }), jsxs(NativeSelect, { onChange: handleInterpretationChange, value: photometricInterpretation, inputProps: { id: interpretationId, "aria-label": "Photometric interpretation selector" }, classes: { root: selectClasses2.selectRoot }, children: [jsx$1("option", { "aria-label": "RGB", value: "RGB", children: "RGB" }), channelScopes.length > 0 ? jsx$1("option", { "aria-label": "BlackIsZero", value: "BlackIsZero", children: "BlackIsZero" }) : null] })] }), jsxs(MenuItem, { dense: true, disableGutters: true, classes: menuClasses.menuItem, children: [jsx$1("label", { className: menuClasses.imageLayerMenuLabel, htmlFor: transparentId, children: "Zero Transparent: " }), jsx$1(Checkbox$1, { color: "primary", checked: spatialLayerTransparentColor !== null, onChange: (e3, v) => setSpatialLayerTransparentColor(v ? [0, 0, 0] : null), slotProps: { input: { id: transparentId, "aria-label": "Render zero-value pixels as transparent" } } })] }), jsxs(MenuItem, { dense: true, disableGutters: true, classes: menuClasses.menuItem, children: [jsx$1("label", { className: menuClasses.imageLayerMenuLabel, htmlFor: volumetricId, children: "Volumetric Rendering: " }), jsxs(NativeSelect, { onChange: handleVolumetricChange, value: volumetricRenderingAlgorithm, inputProps: { id: volumetricId, "aria-label": "Volumetric rendering algorithm selector" }, classes: { root: selectClasses2.selectRoot }, disabled: !is3dMode, children: [jsx$1("option", { "aria-label": "Additive", value: "additive", children: "Additive" }), jsx$1("option", { "aria-label": "Maximum Intensity Projection", value: "maximumIntensityProjection", children: "Maximum Intensity Projection" })] })] }), jsxs(MenuItem, { dense: true, disableGutters: true, children: [jsx$1("label", { className: menuClasses.imageLayerMenuLabel, htmlFor: resolutionId, children: "Volume Resolution: " }), jsxs(NativeSelect, { disabled: !is3dMode || !isMultiResolution, onChange: handleResolutionChange, value: spatialTargetResolution === null ? "auto" : spatialTargetResolution, inputProps: { id: resolutionId, "aria-label": "Volumetric resolution selector" }, classes: { root: selectClasses2.selectRoot }, children: [jsx$1("option", { value: "auto", children: "Auto" }), Array.isArray(multiResolutionStats) ? multiResolutionStats.map((stats, resolution) => stats.canLoad ? jsx$1("option", { value: resolution, children: `3D: ${resolution}x Downsampled, ~${formatBytes(stats.totalBytes)} per channel, (${stats.height}, ${stats.width}, ${stats.depthDownsampled})` }, `(${stats.height}, ${stats.width}, ${stats.depthDownsampled})`) : null) : null] })] }), jsxs(MenuItem, { dense: true, disableGutters: true, classes: menuClasses.menuItem, children: [jsx$1("label", { className: menuClasses.imageLayerMenuLabel, htmlFor: tooltipsVisibleId, children: "Tooltips Visible: " }), jsx$1(Checkbox$1, { color: "primary", checked: tooltipsVisible, onChange: (e3, v) => setTooltipsVisible(v), slotProps: { input: { id: tooltipsVisibleId, "aria-label": "Render pixel value tooltips" } } })] }), jsxs(MenuItem, { dense: true, disableGutters: true, classes: menuClasses.menuItem, children: [jsx$1("label", { className: menuClasses.imageLayerMenuLabel, htmlFor: channelLabelsVisibleId, children: "Channel Labels Visible: " }), jsx$1(Checkbox$1, { disabled: photometricInterpretation === "RGB", color: "primary", checked: channelLabelsVisible, onChange: (e3, v) => setChannelLabelsVisible(v), slotProps: { input: { id: channelLabelsVisibleId, "aria-label": "Render channel labels" } } })] }), jsxs(MenuItem, { dense: true, disableGutters: true, classes: menuClasses.menuItem, children: [jsx$1("label", { className: menuClasses.imageLayerMenuLabel, htmlFor: channelLabelsOrientationId, children: "Channel Labels Orientation: " }), jsxs(NativeSelect, { disabled: photometricInterpretation === "RGB", onChange: handleChannelLabelsOrientationChange, value: channelLabelsOrientation, inputProps: { id: channelLabelsOrientationId, "aria-label": "Channel labels orientation selector" }, classes: { root: selectClasses2.selectRoot }, children: [jsx$1("option", { "aria-label": "Vertical", value: "vertical", children: "Vertical" }), jsx$1("option", { "aria-label": "Horizontal", value: "horizontal", children: "Horizontal" })] })] }), jsxs(MenuItem, { dense: true, disableGutters: true, classes: menuClasses.menuItem, children: [jsx$1("label", { className: menuClasses.imageLayerMenuLabel, htmlFor: channelLabelSizeId, children: "Channel Labels Size: " }), jsx$1(Slider, { disabled: photometricInterpretation === "RGB", value: channelLabelSize, min: 8, max: 36, step: 1, onChange: (e3, v) => setChannelLabelSize(v), className: menuClasses.menuItemSlider, orientation: "horizontal", id: channelLabelSizeId, "aria-label": "Channel labels text size slider" })] }), jsxs(MenuItem, { dense: true, disableGutters: true, classes: menuClasses.menuItem, children: [jsx$1("label", { className: menuClasses.imageLayerMenuLabel, htmlFor: channelsSortOrderId, children: "Channel Ordering: " }), jsxs(NativeSelect, { onChange: handleChannelsSortOrderChange, value: channelsSortOrder, inputProps: { id: channelsSortOrderId, "aria-label": "Channel sort order selector" }, classes: { root: selectClasses2.selectRoot }, children: [jsx$1("option", { "aria-label": "Original", value: "original", children: "Original" }), jsx$1("option", { "aria-label": "Alphabetical", value: "alphabetical", children: "Alphabetical" })] })] })] });
 }
 function ImageLayerController(props) {
   const {
@@ -265414,8 +265431,8 @@ function ImageLayerController(props) {
     volumeStillRef = null
   } = props;
   const [open2, setOpen] = useState(true);
-  const { spatialLayerVisible: visible, spatialLayerOpacity: opacity2, spatialLayerColormap: colormap, photometricInterpretation, spatialTargetResolution, spatialLodFactor, volumetricRenderingAlgorithm, spatialLayerTransparentColor, spatialSliceX, spatialSliceY, spatialSliceZ, tooltipsVisible, spatialChannelLabelsVisible: channelLabelsVisible, spatialChannelLabelsOrientation: channelLabelsOrientation, spatialChannelLabelSize: channelLabelSize } = layerCoordination;
-  const { setSpatialLayerVisible: setVisible, setSpatialLayerOpacity: setOpacity2, setSpatialLayerColormap: setColormap, setPhotometricInterpretation, setSpatialTargetResolution, setSpatialLodFactor, setVolumetricRenderingAlgorithm, setSpatialLayerTransparentColor, setSpatialSliceX, setSpatialSliceY, setSpatialSliceZ, setTooltipsVisible, setSpatialChannelLabelsVisible: setChannelLabelsVisible, setSpatialChannelLabelsOrientation: setChannelLabelsOrientation, setSpatialChannelLabelSize: setChannelLabelSize } = setLayerCoordination;
+  const { spatialLayerVisible: visible, spatialLayerOpacity: opacity2, spatialLayerColormap: colormap, photometricInterpretation, spatialTargetResolution, spatialLodFactor, volumetricRenderingAlgorithm, spatialLayerTransparentColor, spatialSliceX, spatialSliceY, spatialSliceZ, tooltipsVisible, spatialChannelLabelsVisible: channelLabelsVisible, spatialChannelLabelsOrientation: channelLabelsOrientation, spatialChannelLabelSize: channelLabelSize, spatialChannelsSortOrder: channelsSortOrder } = layerCoordination;
+  const { setSpatialLayerVisible: setVisible, setSpatialLayerOpacity: setOpacity2, setSpatialLayerColormap: setColormap, setPhotometricInterpretation, setSpatialTargetResolution, setSpatialLodFactor, setVolumetricRenderingAlgorithm, setSpatialLayerTransparentColor, setSpatialSliceX, setSpatialSliceY, setSpatialSliceZ, setTooltipsVisible, setSpatialChannelLabelsVisible: setChannelLabelsVisible, setSpatialChannelLabelsOrientation: setChannelLabelsOrientation, setSpatialChannelLabelSize: setChannelLabelSize, setSpatialChannelsSortOrder: setChannelsSortOrder } = setLayerCoordination;
   const addChannel = useAddImageChannelInMetaCoordinationScopes();
   const visibleSetting = typeof visible === "boolean" ? visible : true;
   const Visibility = useMemo$1(() => visibleSetting ? VisibilityIcon : VisibilityOffIcon, [visibleSetting]);
@@ -265435,12 +265452,12 @@ function ImageLayerController(props) {
   const { classes: menuClasses } = useEllipsisMenuStyles();
   const { classes: controllerSectionClasses } = useControllerSectionStyles();
   const isMultiChannel = photometricInterpretation !== "RGB";
-  return jsx$1(Grid$1, { className: controllerSectionClasses.layerControllerGrid, children: jsxs(Paper, { elevation: 4, className: controllerSectionClasses.layerControllerRoot, children: [jsxs(Grid$1, { container: true, direction: "row", justifyContent: "space-between", children: [jsx$1(Grid$1, { size: 1, children: jsx$1(Button, { className: menuClasses.imageLayerVisibleButton, onClick: handleVisibleChange, "aria-label": "Toggle layer visibility", children: jsx$1(Visibility, {}) }) }), jsx$1(Grid$1, { size: 1 }), jsx$1(Grid$1, { size: 6, children: jsx$1(Typography, { className: menuClasses.imageLayerName, children: label2 }) }), jsx$1(Grid$1, { size: 2, children: jsx$1(Slider, { value: opacity2, min: 0, max: 1, step: 1e-3, onChange: handleOpacityChange, className: menuClasses.imageLayerOpacitySlider, orientation: "horizontal", "aria-label": `Adjust opacity for layer ${label2}` }) }), jsx$1(Grid$1, { size: 1, children: jsx$1(ImageLayerEllipsisMenu, { colormap, setColormap, photometricInterpretation, setPhotometricInterpretation, spatialTargetResolution, setSpatialTargetResolution, spatialLodFactor, setSpatialLodFactor, volumetricRenderingAlgorithm, setVolumetricRenderingAlgorithm, spatialLayerTransparentColor, setSpatialLayerTransparentColor, spatialRenderingMode, image: image2, channelScopes, tooltipsVisible, setTooltipsVisible, channelLabelsVisible, setChannelLabelsVisible, channelLabelsOrientation, setChannelLabelsOrientation, channelLabelSize, setChannelLabelSize }) }), jsxs(Grid$1, { size: 1, container: true, direction: "row", children: [jsx$1(ImageIcon, { className: classes2.layerTypeImageIcon }), isMultiChannel ? jsx$1(Button, { onClick: handleOpenChange, className: classes2.channelExpansionButton, "aria-label": "Expand or collapse channel controls", children: open2 ? jsx$1(ExpandLess, {}) : jsx$1(ExpandMoreIcon, {}) }) : null] })] }), isMultiChannel && open2 ? jsxs(Grid$1, { container: true, direction: "column", justifyContent: "space-between", className: classes2.imageChannelControllerGrid, children: [channelScopes.map((cScope) => {
+  return jsx$1(Grid$1, { className: controllerSectionClasses.layerControllerGrid, children: jsxs(Paper, { elevation: 4, className: controllerSectionClasses.layerControllerRoot, children: [jsxs(Grid$1, { container: true, direction: "row", justifyContent: "space-between", children: [jsx$1(Grid$1, { size: 1, children: jsx$1(Button, { className: menuClasses.imageLayerVisibleButton, onClick: handleVisibleChange, "aria-label": "Toggle layer visibility", children: jsx$1(Visibility, {}) }) }), jsx$1(Grid$1, { size: 1 }), jsx$1(Grid$1, { size: 6, children: jsx$1(Typography, { className: menuClasses.imageLayerName, children: label2 }) }), jsx$1(Grid$1, { size: 2, children: jsx$1(Slider, { value: opacity2, min: 0, max: 1, step: 1e-3, onChange: handleOpacityChange, className: menuClasses.imageLayerOpacitySlider, orientation: "horizontal", "aria-label": `Adjust opacity for layer ${label2}` }) }), jsx$1(Grid$1, { size: 1, children: jsx$1(ImageLayerEllipsisMenu, { colormap, setColormap, photometricInterpretation, setPhotometricInterpretation, spatialTargetResolution, setSpatialTargetResolution, spatialLodFactor, setSpatialLodFactor, volumetricRenderingAlgorithm, setVolumetricRenderingAlgorithm, spatialLayerTransparentColor, setSpatialLayerTransparentColor, spatialRenderingMode, image: image2, channelScopes, tooltipsVisible, setTooltipsVisible, channelLabelsVisible, setChannelLabelsVisible, channelLabelsOrientation, setChannelLabelsOrientation, channelLabelSize, setChannelLabelSize, channelsSortOrder, setChannelsSortOrder }) }), jsxs(Grid$1, { size: 1, container: true, direction: "row", children: [jsx$1(ImageIcon, { className: classes2.layerTypeImageIcon }), isMultiChannel ? jsx$1(Button, { onClick: handleOpenChange, className: classes2.channelExpansionButton, "aria-label": "Expand or collapse channel controls", children: open2 ? jsx$1(ExpandLess, {}) : jsx$1(ExpandMoreIcon, {}) }) : null] })] }), isMultiChannel && open2 ? jsxs(Grid$1, { container: true, direction: "column", justifyContent: "space-between", className: classes2.imageChannelControllerGrid, children: [channelScopes.map((cScope) => {
     const { spatialTargetC, spatialChannelVisible, spatialChannelOpacity, spatialChannelColor, spatialChannelWindow, spatialMaxResolution } = channelCoordination[cScope];
     const { setSpatialTargetC, setSpatialChannelVisible, setSpatialChannelOpacity, setSpatialChannelColor, setSpatialChannelWindow, setSpatialMaxResolution } = setChannelCoordination[cScope];
     const channelIndex = image2?.getChannelIndex(spatialTargetC);
     const numResolutions = image2?.getNumResolutions();
-    return jsx$1(ImageChannelController, { theme, coordinationScopesRaw, layerScope, channelScope: cScope, targetT, targetZ, targetC: channelIndex, setTargetC: setSpatialTargetC, visible: spatialChannelVisible, setVisible: setSpatialChannelVisible, opacity: spatialChannelOpacity, setOpacity: setSpatialChannelOpacity, color: spatialChannelColor, setColor: setSpatialChannelColor, window: spatialChannelWindow, setWindow: setSpatialChannelWindow, colormapOn: colormap !== null, featureIndex, image: image2, spatialRenderingMode, numResolutions, spatialMaxResolution, setSpatialMaxResolution }, cScope);
+    return jsx$1(ImageChannelController, { theme, coordinationScopesRaw, layerScope, channelScope: cScope, targetT, targetZ, targetC: channelIndex, setTargetC: setSpatialTargetC, visible: spatialChannelVisible, setVisible: setSpatialChannelVisible, opacity: spatialChannelOpacity, setOpacity: setSpatialChannelOpacity, color: spatialChannelColor, setColor: setSpatialChannelColor, window: spatialChannelWindow, setWindow: setSpatialChannelWindow, colormapOn: colormap !== null, featureIndex, image: image2, channelsSortOrder, spatialRenderingMode, numResolutions, spatialMaxResolution, setSpatialMaxResolution }, cScope);
   }), jsx$1(Button, { disabled: channelScopes.length === MAX_CHANNELS$1 || channelScopes.length === imageNumChannels, onClick: handleChannelAdd, fullWidth: true, variant: "outlined", className: classes2.imageLayerButton, startIcon: jsx$1(AddIcon, {}), size: "small", "aria-label": "Add a channel to this layer", children: "Add Channel" })] }) : null, is3dMode && image2 ? jsxs(Grid$1, { container: true, direction: "column", justifyContent: "space-between", className: classes2.imageChannelControllerGrid, children: [jsx$1(Typography, { className: classes2.clippingPanesLabel, children: "Clipping planes:" }), jsx$1(Grid$1, { size: 12, className: classes2.clippingSliders, children: jsx$1(ClippingSliders, { image: image2, spatialSliceX, spatialSliceY, spatialSliceZ, setSpatialSliceX, setSpatialSliceY, setSpatialSliceZ }) }), jsx$1(LoadingStatusIndicator, { loadingProgress: volumeLoadingProgress, onStopLoading: onStopVolumeLoading, onRestartLoading: onRestartVolumeLoading, stillRef: volumeStillRef, spatialRenderingMode })] }) : null] }) });
 }
 const useStyles$7 = makeStyles()((theme) => ({
@@ -265491,7 +265508,7 @@ function LayerController(props) {
   return jsxs("div", { children: [anyLayerHasZ ? jsx$1(GlobalDimensionSlider, { label: "Z", targetValue: targetZ, setTargetValue: setTargetZ, max: maxZ, spatialRenderingMode, setSpatialRenderingMode }) : null, anyLayerHasT ? jsx$1(GlobalDimensionSlider, { label: "T", targetValue: targetT, setTargetValue: setTargetT, max: maxT }) : null, pointLayerScopes && reversedPointLayerScopes.map((layerScope) => jsx$1(PointLayerController, { theme, layerScope, layerCoordination: pointLayerCoordination[0][layerScope], setLayerCoordination: pointLayerCoordination[1][layerScope], pointMatrixIndicesData: pointMultiIndicesData?.[layerScope], tiledPointsLoadingProgress, layerPerFeatureForPoints }, layerScope)), spotLayerScopes && reversedSpotLayerScopes.map((layerScope) => jsx$1(SpotLayerController, { theme, layerScope, layerCoordination: spotLayerCoordination[0][layerScope], setLayerCoordination: spotLayerCoordination[1][layerScope] }, layerScope)), segmentationLayerScopes && reversedSegmentationLayerScopes.map((layerScope) => jsx$1(SegmentationLayerController, { theme, layerScope, layerCoordination: segmentationLayerCoordination[0][layerScope], setLayerCoordination: segmentationLayerCoordination[1][layerScope], channelScopes: segmentationChannelScopesByLayer[layerScope], channelCoordination: segmentationChannelCoordination[0][layerScope], setChannelCoordination: segmentationChannelCoordination[1][layerScope] }, layerScope)), imageLayerScopes && reversedImageLayerScopes.map((layerScope) => jsx$1(ImageLayerController, { theme, coordinationScopesRaw, layerScope, layerCoordination: imageLayerCoordination[0][layerScope], setLayerCoordination: imageLayerCoordination[1][layerScope], channelScopes: imageChannelScopesByLayer[layerScope], channelCoordination: imageChannelCoordination[0][layerScope], setChannelCoordination: imageChannelCoordination[1][layerScope], image: images[layerScope]?.image?.instance, featureIndex: images[layerScope]?.featureIndex, targetT, targetZ, spatialRenderingMode, volumeLoadingProgress: volumeLoadingStatus?.loadingProgress, onStopVolumeLoading: volumeLoadingStatus?.onStopLoading, onRestartVolumeLoading: volumeLoadingStatus?.onRestartLoading, volumeStillRef: volumeLoadingStatus?.stillRef }, layerScope))] });
 }
 function LayerControllerSubscriber(props) {
-  const { coordinationScopes: coordinationScopesRaw, coordinationScopesBy: coordinationScopesByRaw, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, title: title2 = "Spatial Layers", uuid: uuid2, layerPerFeatureForPoints = false, cameraPresets } = props;
+  const { coordinationScopes: coordinationScopesRaw, coordinationScopesBy: coordinationScopesByRaw, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, title: title2 = "Spatial Layers", uuid: uuid2, layerPerFeatureForPoints = false, cameraPresets, helpText = ViewHelpMapping.LAYER_CONTROLLER_BETA } = props;
   const loaders = useLoaders();
   const mergeCoordination = useMergeCoordination();
   const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
@@ -265579,7 +265596,8 @@ function LayerControllerSubscriber(props) {
     CoordinationType$1.TOOLTIPS_VISIBLE,
     CoordinationType$1.SPATIAL_CHANNEL_LABELS_VISIBLE,
     CoordinationType$1.SPATIAL_CHANNEL_LABELS_ORIENTATION,
-    CoordinationType$1.SPATIAL_CHANNEL_LABEL_SIZE
+    CoordinationType$1.SPATIAL_CHANNEL_LABEL_SIZE,
+    CoordinationType$1.SPATIAL_CHANNELS_SORT_ORDER
   ], coordinationScopes, coordinationScopesBy, CoordinationType$1.IMAGE_LAYER);
   const imageChannelCoordination = useComplexCoordinationSecondary([
     CoordinationType$1.SPATIAL_TARGET_C,
@@ -265647,7 +265665,7 @@ function LayerControllerSubscriber(props) {
     imageDataStatus,
     pointMultiIndicesDataStatus
   ]);
-  return jsx$1(TitleInfo, { title: title2, isScroll: true, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, isReady, errors, children: jsx$1(LayerController, { theme, coordinationScopesRaw, segmentationLayerScopes, segmentationLayerCoordination, segmentationChannelScopesByLayer, segmentationChannelCoordination, images: imageData, imageLayerScopes, imageLayerCoordination, targetT, targetZ, setTargetT, setTargetZ, spatialRenderingMode, setSpatialRenderingMode, imageChannelScopesByLayer, imageChannelCoordination, spotLayerScopes, spotLayerCoordination, pointLayerScopes, pointLayerCoordination, pointMultiIndicesData, layerPerFeatureForPoints, volumeLoadingStatus, tiledPointsLoadingProgress }) });
+  return jsx$1(TitleInfo, { title: title2, isScroll: true, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, isReady, errors, helpText, children: jsx$1(LayerController, { theme, coordinationScopesRaw, segmentationLayerScopes, segmentationLayerCoordination, segmentationChannelScopesByLayer, segmentationChannelCoordination, images: imageData, imageLayerScopes, imageLayerCoordination, targetT, targetZ, setTargetT, setTargetZ, spatialRenderingMode, setSpatialRenderingMode, imageChannelScopesByLayer, imageChannelCoordination, spotLayerScopes, spotLayerCoordination, pointLayerScopes, pointLayerCoordination, pointMultiIndicesData, layerPerFeatureForPoints, volumeLoadingStatus, tiledPointsLoadingProgress }) });
 }
 const isIterable$2 = (obj) => Symbol.iterator in obj;
 const hasIterableEntries = (value2) => (
@@ -267562,7 +267580,7 @@ function HiglassGlobalStyles(props) {
 }
 register({ dataFetcher: ZarrMultivecDataFetcher_default, config: ZarrMultivecDataFetcher_default.config }, { pluginType: "dataFetcher" });
 const LazyHiGlassComponent = React__default.lazy(async () => {
-  const { HiGlassComponent } = await import("./higlass-DL7cd1YR.js");
+  const { HiGlassComponent } = await import("./higlass-CGhpbMxK.js");
   return { default: HiGlassComponent };
 });
 const HG_SIZE = 800;
@@ -269151,13 +269169,16 @@ const globalNeuroglancerStyles = {
   },
   "input.perspective-panel-show-slice-views": { pointerEvents: "all" },
   ".neuroglancer-rendered-data-panel": {
-    cursor: "crosshair",
+    cursor: "grab",
     position: "relative",
     outline: "0",
     touchAction: "none",
     color: "#fff",
     textAlign: "left"
   },
+  ".neuroglancer-rendered-data-panel:active": {
+    cursor: "grabbing"
+  },
   ".neuroglancer-display-dimensions-widget": {
     position: "absolute",
     cursor: "default",
@@ -270510,7 +270531,7 @@ function NeuroglancerGlobalStyles(props) {
   const { classes: classes2 } = props;
   return jsxs(Fragment, { children: [jsx$1(GlobalStyles$3, { styles: globalNeuroglancerCss }), jsx$1(ScopedGlobalStyles, { styles: globalNeuroglancerStyles, parentClassName: classes2.neuroglancerWrapper })] });
 }
-const LazyReactNeuroglancer = React__default.lazy(() => import("./ReactNeuroglancer-Do72MK3I.js"));
+const LazyReactNeuroglancer = React__default.lazy(() => import("./ReactNeuroglancer-BuXB_Emb.js"));
 function createWorker() {
   const worker = new WorkerFactory$1();
   worker.AsyncComputationWorker = WorkerFactory;
@@ -273544,7 +273565,7 @@ function useFilteredVolcanoData(props) {
       const rawSampleSetPathB = coordinationValues.sampleSetFilter[1];
       const sampleSetPathB = [...rawSampleSetPathB];
       sampleSetPathB[0] = sampleSetsColumnNameMappingReversed[rawSampleSetPathB[0]];
-      if (isEqual$3(sampleSetPathA, sampleSetSelection[1]) && isEqual$3(sampleSetPathB, sampleSetSelection[0])) {
+      if (isEqual$3(sampleSetPathA, sampleSetSelection[0]) && isEqual$3(sampleSetPathB, sampleSetSelection[1])) {
         shouldSwapFoldChangeDirection = true;
       }
     }
@@ -325298,6 +325319,10 @@ function TreemapSubscriber(props) {
   }, [setObsSetSelection]);
   return jsxs(TitleInfo, { title: `Treemap of ${capitalize$3(pluralize(obsType, 2))}`, info: `${commaNumber(selectedObsCount)} ${pluralize(obsType, selectedObsCount)} from ${commaNumber(selectedSampleCount)} ${pluralize(sampleType, selectedSampleCount)}`, removeGridComponent, urls: urls2, theme, isReady, helpText, errors, withPadding: false, options: jsx$1(TreemapOptions, { obsType, sampleType, obsColorEncoding, setObsColorEncoding, hierarchyLevels: hierarchyLevels || DEFAULT_HIERARCHY_LEVELS, setHierarchyLevels }), children: [jsx$1("div", { ref: containerRef, className: classes2.vegaContainer, children: jsx$1(Treemap, { obsCounts, sampleCounts, obsColorEncoding, hierarchyLevels: hierarchyLevels || DEFAULT_HIERARCHY_LEVELS, theme, width: width2, height: Math.max(height2 * (selectedObsCount / totalObsCount), 40), obsType, sampleType, obsSetColor, sampleSetColor, obsSetSelection, sampleSetSelection, onNodeClick }) }), jsx$1("div", { style: { position: "absolute", right: "2px", bottom: "2px", fontSize: "10px" }, children: unselectedObsCount > 0 ? jsx$1("span", { children: `${commaNumber(unselectedObsCount)} ${pluralize(obsType, unselectedObsCount)} from ${commaNumber(unselectedSampleCount)} ${pluralize(sampleType, unselectedSampleCount)} currently omitted` }) : null })] });
 }
+const GOLDEN_RATIO = 0.6180339887498948;
+function topJitter(index2, rangePixels) {
+  return index2 * GOLDEN_RATIO % 1 * rangePixels;
+}
 function VolcanoPlot(props) {
   const { theme, width: width2, height: height2, obsType, featureType, obsSetsColumnNameMappingReversed, sampleSetsColumnNameMappingReversed, sampleSetSelection, obsSetSelection, obsSetColor, sampleSetColor, data: data2, marginTop = 5, marginRight = 5, marginLeft = 50, marginBottom = 50, onFeatureClick, featurePointSignificanceThreshold, featurePointFoldChangeThreshold, featureLabelSignificanceThreshold, featureLabelFoldChangeThreshold } = props;
   const svgRef = useRef();
@@ -325359,10 +325384,10 @@ function VolcanoPlot(props) {
       const obsSetPath2 = [...rawObsSetPath];
       obsSetPath2[0] = obsSetsColumnNameMappingReversed[rawObsSetPath[0]];
       const color2 = obsSetColorScale(obsSetPath2);
-      obsSetG.append("g").selectAll("circle").data(filteredDf).join("circle").attr("cx", (d) => xScale(d.logFoldChange)).attr("cy", (d) => yScale(d.minusLog10p)).attr("r", 3).attr("opacity", 0.5).attr("fill", color2).on("click", (event2, d) => {
+      obsSetG.append("g").selectAll("circle").data(filteredDf).join("circle").attr("cx", (d) => xScale(d.logFoldChange)).attr("cy", (d, i2) => yScale(d.minusLog10p) + (!Number.isFinite(d.minusLog10p) ? topJitter(i2, 20) : 0)).attr("r", 3).attr("opacity", 0.5).attr("fill", color2).on("click", (event2, d) => {
         onFeatureClick(d.featureId);
       });
-      const textElements = obsSetG.append("g").selectAll("text").data(filteredDf).join("text").text((d) => d.featureId).attr("text-anchor", (d) => d.logFoldChange < 0 ? "end" : "start").attr("x", (d) => xScale(d.logFoldChange)).attr("y", (d) => yScale(d.minusLog10p)).style("display", (d) => Math.abs(d.logFoldChange) < (featureLabelFoldChangeThreshold ?? 5) || d.featureSignificance >= (featureLabelSignificanceThreshold ?? 0.01) ? "none" : void 0).attr("fill", color2).on("click", (event2, d) => {
+      const textElements = obsSetG.append("g").selectAll("text").data(filteredDf).join("text").text((d) => d.featureId).attr("text-anchor", (d) => d.logFoldChange < 0 ? "end" : "start").attr("x", (d) => xScale(d.logFoldChange)).attr("y", (d, i2) => yScale(d.minusLog10p) + (!Number.isFinite(d.minusLog10p) ? topJitter(i2, 20) : 0)).style("display", (d) => Math.abs(d.logFoldChange) < (featureLabelFoldChangeThreshold ?? 5) || d.featureSignificance >= (featureLabelSignificanceThreshold ?? 0.01) ? "none" : void 0).attr("fill", color2).on("click", (event2, d) => {
         onFeatureClick(d.featureId);
       });
       textElements.append("title").text((d) => `${featureType}: ${d.featureId}
@@ -349423,6 +349448,7 @@ const baseCoordinationTypes = [
   new PluginCoordinationType(CoordinationType$1.SPATIAL_CHANNEL_LABELS_VISIBLE, true, z.boolean()),
   new PluginCoordinationType(CoordinationType$1.SPATIAL_CHANNEL_LABELS_ORIENTATION, "vertical", z.enum(["vertical", "horizontal"])),
   new PluginCoordinationType(CoordinationType$1.SPATIAL_CHANNEL_LABEL_SIZE, 14, z.number()),
+  new PluginCoordinationType(CoordinationType$1.SPATIAL_CHANNELS_SORT_ORDER, "original", z.enum(["original", "alphabetical"])),
   new PluginCoordinationType(CoordinationType$1.SAMPLE_TYPE, "sample", z.string().nullable()),
   // TODO: remove one array level and use multi-coordination for sampleSetSelection?
   new PluginCoordinationType(CoordinationType$1.SAMPLE_FILTER, null, z.array(z.string()).nullable()),

package/dist/index.js

@@ -1,4 +1,4 @@
-import { a5, a3, a1, a4, a2, a0, a6 } from "./index-GwbVVPa9.js";
+import { a5, a3, a1, a4, a2, a0, a6 } from "./index-moreUHDf.js";
 import { useComplexCoordination, useComplexCoordinationSecondary, useCoordination, useCoordinationScopes, useCoordinationScopesBy, useGridItemSize, useMultiCoordinationScopesNonNull, useMultiCoordinationScopesSecondaryNonNull, usePageModeView } from "@vitessce/vit-s";
 export {
   a5 as PluginAsyncFunction,

package/dist/{jpeg-CYgQz5aG.js → jpeg-_87xUwY6.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-GwbVVPa9.js";
+import { B as BaseDecoder } from "./index-moreUHDf.js";
 const dctZigZag = new Int32Array([
   0,
   1,

package/dist/{lerc-C-Llf71G.js → lerc-DFl9HcRa.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { a as getDefaultExportFromCjs, B as BaseDecoder, L as LercParameters, b as LercAddCompression } from "./index-GwbVVPa9.js";
+import { a as getDefaultExportFromCjs, B as BaseDecoder, L as LercParameters, b as LercAddCompression } from "./index-moreUHDf.js";
 var LercDecode = { exports: {} };
 var hasRequiredLercDecode;
 function requireLercDecode() {

package/dist/{lzw-DJhX6Tr-.js → lzw-hla-j59h.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-GwbVVPa9.js";
+import { B as BaseDecoder } from "./index-moreUHDf.js";
 const MIN_BITS = 9;
 const CLEAR_CODE = 256;
 const EOI_CODE = 257;

package/dist/{packbits-BOwAxrqR.js → packbits-C8umOnfG.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-GwbVVPa9.js";
+import { B as BaseDecoder } from "./index-moreUHDf.js";
 class PackbitsDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     const dataView = new DataView(buffer);

package/dist/{raw-BX1y7Iy_.js → raw-BLQKlp_4.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-GwbVVPa9.js";
+import { B as BaseDecoder } from "./index-moreUHDf.js";
 class RawDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return buffer;

package/dist/{webimage-DCU5-f3Q.js → webimage-nk5eMN68.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-GwbVVPa9.js";
+import { B as BaseDecoder } from "./index-moreUHDf.js";
 class WebImageDecoder extends BaseDecoder {
   constructor() {
     super();

package/dist/xrStore-gGt4Wkvz.js

@@ -0,0 +1,8 @@
+import { g as getXRModule } from "./index-0nuepTVk.js";
+const xrStore = getXRModule().createXRStore({
+  handTracking: true,
+  emulate: false
+});
+export {
+  xrStore as x
+};

package/dist-tsc/base-plugins.d.ts

@@ -1174,6 +1174,6 @@ export declare const baseCoordinationTypes: (PluginCoordinationType<z.ZodNullabl
             color?: number[] | undefined;
         }>;
     })[];
-}>>> | PluginCoordinationType<z.ZodNullable<z.ZodUnion<[z.ZodNumber, z.ZodString]>>> | PluginCoordinationType<z.ZodNullable<z.ZodArray<z.ZodNumber, "many">>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["BlackIsZero", "RGB"]>>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["2D", "3D"]>>> | PluginCoordinationType<z.ZodEnum<["maximumIntensityProjection", "additive"]>> | PluginCoordinationType<z.ZodEnum<["vertical", "horizontal"]>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["sampleSelection", "sampleSetSelection"]>>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["sampleFilter", "sampleSetFilter"]>>> | PluginCoordinationType<z.ZodEnum<["cellSetSelection", "sampleSetSelection", "contourColor"]>> | PluginCoordinationType<z.ZodNullable<z.ZodArray<z.ZodEnum<["sampleSet", "obsSet"]>, "many">>>)[];
+}>>> | PluginCoordinationType<z.ZodNullable<z.ZodUnion<[z.ZodNumber, z.ZodString]>>> | PluginCoordinationType<z.ZodNullable<z.ZodArray<z.ZodNumber, "many">>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["BlackIsZero", "RGB"]>>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["2D", "3D"]>>> | PluginCoordinationType<z.ZodEnum<["maximumIntensityProjection", "additive"]>> | PluginCoordinationType<z.ZodEnum<["vertical", "horizontal"]>> | PluginCoordinationType<z.ZodEnum<["original", "alphabetical"]>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["sampleSelection", "sampleSetSelection"]>>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["sampleFilter", "sampleSetFilter"]>>> | PluginCoordinationType<z.ZodEnum<["cellSetSelection", "sampleSetSelection", "contourColor"]>> | PluginCoordinationType<z.ZodNullable<z.ZodArray<z.ZodEnum<["sampleSet", "obsSet"]>, "many">>>)[];
 export declare const baseAsyncFunctions: PluginAsyncFunction[];
 //# sourceMappingURL=base-plugins.d.ts.map

package/dist-tsc/base-plugins.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"base-plugins.d.ts","sourceRoot":"","sources":["../src/base-plugins.ts"],"names":[],"mappings":"AAWA,OAAO,EACL,cAAc,EACd,mBAAmB,EACnB,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,KAAK,EACV,UAAU,EACV,UAAU,EACX,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,CAAC,EAsDF,MAAM,mBAAmB,CAAC;AAqL3B,eAAO,MAAM,aAAa,kBA+BzB,CAAC;AAEF,eAAO,MAAM,aAAa,wDA8EzB,CAAC;AAEF,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yBAiGsD,CAAC;gCAC3E,CAAC;;;yBAGC,CAAC;gCAEa,CAAC;;;;;;;;;;;;;;;;iBAkBpB,CAAC;;;;iBAMc,CAAC;;;;;;;YAQlB,CAAC;;;YAAmE,CAAC;;;;;;;YAK7C,CAAC;;;YAE0B,CAAC;;;;;;;YAQhD,CAAC;;;YAEa,CAAC;;;;;;;;;;;;;;YAQiH,CAAC;;;YAEnH,CAAC;;;;;;;;YAU2B,CAAC;;;;YAKjB,CAAC;;;;;;;;;;;;;;;;;;;;;;;;yBAwBL,CAAC;gCACxB,CAAC;;;;;;;;iBAEiE,CAAC;;;;YACG,CAAC;;;;YACL,CAAC;;;;YACE,CAAC;;;;;;;YAEX,CAAC;;;;YACQ,CAAC;;;;;;;;;;;;;;;;;;;;yBAKpD,CAAC;gCAAsD,CAAC;;;;;;;;iBAG1E,CAAC;;;;YAA8F,CAAC;;;;YACjC,CAAC;;;;YAC1B,CAAC;;;;;;;YAEhB,CAAC;;;;YACpB,CAAC;;;;;;;;;;;wBAgEqgD,CAAC;;;wBAA6E,CAAC;;;;;;;;iBAAwR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;iBAA+X,CAAC;wBAA8C,CAAC;0BAAgD,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;0BAAgD,CAAC;wBAA8C,CAAC;;;;;;;;;;yBAAkZ,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;yBAA8E,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;;;;;iBAAgR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;;;qBAAygB,CAAC;;;;qBAA2J,CAAC;;;;;;qBAAsN,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;qBAA0K,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;;YAAoP,CAAC;;;YAAmE,CAAC;;;;;;;;YAAuR,CAAC;;;;YAAkG,CAAC;;;;;;;;;;;;;;;;;;;;;;wBAAmoB,CAAC;;;;iBAAyG,CAAC;wBAA8C,CAAC;;;;iBAAkG,CAAC;wBAA8C,CAAC;0BAAgD,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;YAAgG,CAAC;;;;YAAmG,CAAC;;;;;;;;;;;;wBAA6R,CAAC;;;;iBAAyG,CAAC;wBAA8C,CAAC;;;;iBAAkG,CAAC;wBAA8C,CAAC;0BAAgD,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;YAAgG,CAAC;;;;YAAmG,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBA3jBjtS,CAAC;;;;;qBAG2B,CAAC;qBACpB,CAAC;;;;;;;;;qBAGsB,CAAC;6BACD,CAAC;;sBAClC,CAAC;;;;;qBAMQ,CAAC;qBAEL,CAAC;;;;;;;;;qBAWX,CAAC;6BAEM,CAAC;;;;;;;;;;;;;kBAuBQ,CAAC;mBAEjB,CAAA;gBAGY,CAAC;gBACK,CAAC;uBAElB,CAAC;iBACc,CAAC;oBAEb,CAAC;oBACS,CAAC;qBAEP,CAAC;;kBAEL,CAAC;mBACc,CAAC;gBAEb,CAAC;gBACM,CAAC;uBAIpB,CAAF;iBACqB,CAAC;oBACI,CAAC;oBAItB,CAAC;qBAEiB,CAAC;;;;;;gBAMV,CAAC;sBACD,CAAC;;;;;qBAOV,CAAC;qBAEJ,CAAD;;;;;;;;;qBAagB,CAAC;6BAGN,CAAC;;mBAEA,CAAC;kBACZ,CAAC;mBAED,CAAA;gBAEU,CAAC;gBAER,CAAC;uBAED,CAAC;iBAEF,CAAC;oBACa,CAAC;oBACgB,CAAC;qBAGlC,CAAA;;;;;;gBAMF,CAAC;sBAA0B,CAAC;;;;;qBAMF,CAAC;qBAA4C,CAAC;;;;;;;;;qBAIhC,CAAC;6BAAoD,CAAC;;mBAE5C,CAAC;kBAAsB,CAAC;mBAC3C,CAAC;gBACN,CAAC;gBAAsC,CAAC;uBAA6C,CAAC;iBAAuC,CAAC;oBAC9I,CAAC;oBACT,CAAC;qBACqB,CAAA;;;;;;;;;gBAIS,CAAC;sBAA2B,CAAA;;;;;qBAII,CAAC;qBAA4C,CAAC;;;;;;;;;qBAQ9C,CAAC;6BAClB,CAAC;;mBACf,CAAC;kBAC7B,CAAC;mBAAyC,CAAC;gBACF,CAAC;gBACxB,CAAC;uBACR,CAAC;iBAAuC,CAAC;oBACpB,CAAC;oBAC5B,CAAC;qBAA2C,CAAC;;;;;;;;;;;gBAInB,CAAC;sBAA0B,CAAC;;;;;qBAI/D,CAAD;qBAA4C,CAAC;;;;;;;;;qBAIhB,CAAC;6BACzB,CAAC;;mBACJ,CAAC;kBAAsB,CAAC;mBACtB,CAAC;gBACF,CAAC;gBAAsC,CAAC;uBAC/B,CAAC;iBAAuC,CAAC;oBACxC,CAAC;oBAA0C,CAAC;qBACjD,CAAC;;;;;;;;;;;;;;OAqGT,CAAC;AAIF,eAAO,MAAM,qBAAqB;;;;;;;;aArXtB,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cACQ,CAAC;eACW,CAAC;;;;;;;;;;;;;;;;;;;aAqBe,CAAC;cACjB,CAAC;eACzB,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;aArEW,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cACQ,CAAC;eACW,CAAC;;;;;;;;;;;;;;;;;;;aAqBe,CAAC;cACjB,CAAC;eACzB,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;o3BAijBA,CAAC;AAEF,eAAO,MAAM,kBAAkB,uBAK9B,CAAC"}

package/dist-tsc/base-plugins.js

@@ -335,6 +335,7 @@ export const baseCoordinationTypes = [
     new PluginCoordinationType(CoordinationType.SPATIAL_CHANNEL_LABELS_VISIBLE, true, z.boolean()),
     new PluginCoordinationType(CoordinationType.SPATIAL_CHANNEL_LABELS_ORIENTATION, 'vertical', z.enum(['vertical', 'horizontal'])),
     new PluginCoordinationType(CoordinationType.SPATIAL_CHANNEL_LABEL_SIZE, 14, z.number()),
+    new PluginCoordinationType(CoordinationType.SPATIAL_CHANNELS_SORT_ORDER, 'original', z.enum(['original', 'alphabetical'])),
     new PluginCoordinationType(CoordinationType.SAMPLE_TYPE, 'sample', z.string().nullable()),
     // TODO: remove one array level and use multi-coordination for sampleSetSelection?
     new PluginCoordinationType(CoordinationType.SAMPLE_FILTER, null, z.array(z.string()).nullable()),

package/dist-tsc/base-plugins.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/all",
-  "version": "4.0.0",
+  "version": "4.0.1",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -17,38 +17,38 @@
   ],
   "dependencies": {
     "zod": "^3.21.4",
-    "@vitessce/styles": "4.0.0",
-    "@vitessce/constants-internal": "4.0.0",
-    "@vitessce/csv": "4.0.0",
-    "@vitessce/description": "4.0.0",
-    "@vitessce/genomic-profiles": "4.0.0",
-    "@vitessce/error": "4.0.0",
-    "@vitessce/heatmap": "4.0.0",
-    "@vitessce/abstract": "4.0.0",
-    "@vitessce/glb": "4.0.0",
-    "@vitessce/feature-list": "4.0.0",
-    "@vitessce/layer-controller-beta": "4.0.0",
-    "@vitessce/json": "4.0.0",
-    "@vitessce/obs-sets-manager": "4.0.0",
-    "@vitessce/link-controller": "4.0.0",
-    "@vitessce/ome-tiff": "4.0.0",
-    "@vitessce/layer-controller": "4.0.0",
-    "@vitessce/scatterplot-embedding": "4.0.0",
-    "@vitessce/plugins": "4.0.0",
-    "@vitessce/scatterplot-gating": "4.0.0",
-    "@vitessce/schemas": "4.0.0",
-    "@vitessce/spatial": "4.0.0",
-    "@vitessce/spatial-beta": "4.0.0",
-    "@vitessce/statistical-plots": "4.0.0",
-    "@vitessce/status": "4.0.0",
-    "@vitessce/globals": "4.0.0",
-    "@vitessce/vit-s": "4.0.0",
-    "@vitessce/zarr": "4.0.0",
-    "@vitessce/spatial-zarr": "4.0.0",
-    "@vitessce/spatial-accelerated": "4.0.0",
-    "@vitessce/biomarker-select": "4.0.0",
-    "@vitessce/neuroglancer": "4.0.0",
-    "@vitessce/spatial-three": "4.0.0"
+    "@vitessce/styles": "4.0.1",
+    "@vitessce/constants-internal": "4.0.1",
+    "@vitessce/abstract": "4.0.1",
+    "@vitessce/csv": "4.0.1",
+    "@vitessce/error": "4.0.1",
+    "@vitessce/description": "4.0.1",
+    "@vitessce/feature-list": "4.0.1",
+    "@vitessce/genomic-profiles": "4.0.1",
+    "@vitessce/heatmap": "4.0.1",
+    "@vitessce/glb": "4.0.1",
+    "@vitessce/json": "4.0.1",
+    "@vitessce/layer-controller": "4.0.1",
+    "@vitessce/layer-controller-beta": "4.0.1",
+    "@vitessce/link-controller": "4.0.1",
+    "@vitessce/obs-sets-manager": "4.0.1",
+    "@vitessce/ome-tiff": "4.0.1",
+    "@vitessce/plugins": "4.0.1",
+    "@vitessce/scatterplot-embedding": "4.0.1",
+    "@vitessce/scatterplot-gating": "4.0.1",
+    "@vitessce/spatial": "4.0.1",
+    "@vitessce/spatial-beta": "4.0.1",
+    "@vitessce/statistical-plots": "4.0.1",
+    "@vitessce/schemas": "4.0.1",
+    "@vitessce/status": "4.0.1",
+    "@vitessce/zarr": "4.0.1",
+    "@vitessce/spatial-three": "4.0.1",
+    "@vitessce/spatial-zarr": "4.0.1",
+    "@vitessce/vit-s": "4.0.1",
+    "@vitessce/spatial-accelerated": "4.0.1",
+    "@vitessce/biomarker-select": "4.0.1",
+    "@vitessce/globals": "4.0.1",
+    "@vitessce/neuroglancer": "4.0.1"
   },
   "devDependencies": {
     "@types/react": "^19.0.0",
@@ -60,7 +60,7 @@
     "react": "^18.0.0 || ^19.0.0",
     "@react-three/fiber": "^8.0.0 || ^9.0.0",
     "@react-three/drei": "^9.0.0 || ^10.0.0",
-    "three": ">=0.159.0",
+    "three": ">=0.162.0",
     "@react-three/xr": "^6.0.0"
   },
   "peerDependenciesMeta": {

package/src/base-plugins.ts

@@ -618,6 +618,7 @@ export const baseCoordinationTypes = [
   new PluginCoordinationType(CoordinationType.SPATIAL_CHANNEL_LABELS_VISIBLE, true, z.boolean()),
   new PluginCoordinationType(CoordinationType.SPATIAL_CHANNEL_LABELS_ORIENTATION, 'vertical', z.enum(['vertical', 'horizontal'])),
   new PluginCoordinationType(CoordinationType.SPATIAL_CHANNEL_LABEL_SIZE, 14, z.number()),
+  new PluginCoordinationType(CoordinationType.SPATIAL_CHANNELS_SORT_ORDER, 'original', z.enum(['original', 'alphabetical'])),
   new PluginCoordinationType(CoordinationType.SAMPLE_TYPE, 'sample', z.string().nullable()),
   // TODO: remove one array level and use multi-coordination for sampleSetSelection?
   new PluginCoordinationType(CoordinationType.SAMPLE_FILTER, null, z.array(z.string()).nullable()),

package/dist/xrStore-BymedRtx.js

@@ -1,8 +0,0 @@
-import { createXRStore } from "@react-three/xr";
-const xrStore = createXRStore({
-  handTracking: true,
-  emulate: false
-});
-export {
-  xrStore as x
-};