@vitessce/all 4.0.0-test.2 → 4.0.0

package/dist/{index-CNZN2FGp.js → index-tp3-aWWe.js}

@@ -3,7 +3,7 @@ import React__default, { useRef, useState, useEffect, Suspense, forwardRef } fro
 import { Canvas } from "@react-three/fiber";
 import { Center, Text, Line, Bvh, OrbitControls } from "@react-three/drei";
 import { Matrix3, Matrix4, Vector3, Vector2, UniformsUtils, Data3DTexture, RedFormat, FloatType, LinearFilter, FrontSide, Scene, Group, MeshPhysicalMaterial, MeshBasicMaterial, MeshStandardMaterial, BackSide } from "three";
-import { C as CoordinationType, g as getImageSize } from "./index-BYPSbKAg.js";
+import { C as CoordinationType, g as getImageSize } from "./index-GwbVVPa9.js";
 function MeasureLine({ currentLine, scale }) {
   const textRef = useRef(null);
   return jsxs("group", { children: [jsx(Center, { bottom: true, right: true, position: [currentLine.midPoint.x, currentLine.midPoint.y, currentLine.midPoint.z], rotation: [0, 0, 0], children: jsx(Text, { color: "gray", scale: 0.05, ref: textRef, children: `${(currentLine.startPoint.distanceTo(currentLine.endPoint) * scale).toFixed(2)} µm` }) }), jsx(Line, {
@@ -944,7 +944,7 @@ function GeometryAndMesh(props) {
     setObsHighlight(e.object.name);
   }, onPointerOut: () => setObsHighlight(null) }) })] }) : null, renderingSettings.uniforms && renderingSettings.shader && renderingSettings.meshScale && renderingSettings.geometrySize ? jsx("group", { children: jsxs("mesh", { scale: renderingSettings.meshScale, ref: materialRef, children: [jsx("boxGeometry", { args: renderingSettings.geometrySize }), jsx("shaderMaterial", { customProgramCacheKey: () => "1", side: FrontSide, uniforms: renderingSettings.uniforms, needsUpdate: true, transparent: true, vertexShader: renderingSettings.shader.vertexShader, fragmentShader: renderingSettings.shader.fragmentShader })] }) }) : null] }), jsx("group", { name: "lines", children: lines.map((object) => jsx(MeasureLine, { currentLine: object, scale: 1 }, stringifyLineData(object))) })] });
 }
-const LazyGeometryAndMeshXR = React__default.lazy(() => import("./GeometryAndMeshXR-KXexgmZr.js").catch(() => ({ default: GeometryAndMesh })));
+const LazyGeometryAndMeshXR = React__default.lazy(() => import("./GeometryAndMeshXR-DGeJ5ZBr.js").catch(() => ({ default: GeometryAndMesh })));
 const LazyXRSceneComponents = React__default.lazy(() => import("./XRSceneComponents-DnZLSAJz.js").catch(() => ({ default: () => null })));
 function SpatialThree(props) {
   const materialRef = useRef(null);

package/dist/index.js

@@ -1,4 +1,4 @@
-import { a5, a3, a1, a4, a2, a0, a6 } from "./index-BYPSbKAg.js";
+import { a5, a3, a1, a4, a2, a0, a6 } from "./index-GwbVVPa9.js";
 import { useComplexCoordination, useComplexCoordinationSecondary, useCoordination, useCoordinationScopes, useCoordinationScopesBy, useGridItemSize, useMultiCoordinationScopesNonNull, useMultiCoordinationScopesSecondaryNonNull, usePageModeView } from "@vitessce/vit-s";
 export {
   a5 as PluginAsyncFunction,

package/dist/{jpeg-Bo_KSlUd.js → jpeg-CYgQz5aG.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-BYPSbKAg.js";
+import { B as BaseDecoder } from "./index-GwbVVPa9.js";
 const dctZigZag = new Int32Array([
   0,
   1,

package/dist/{lerc-CXalC3Iu.js → lerc-C-Llf71G.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { a as getDefaultExportFromCjs, B as BaseDecoder, L as LercParameters, b as LercAddCompression } from "./index-BYPSbKAg.js";
+import { a as getDefaultExportFromCjs, B as BaseDecoder, L as LercParameters, b as LercAddCompression } from "./index-GwbVVPa9.js";
 var LercDecode = { exports: {} };
 var hasRequiredLercDecode;
 function requireLercDecode() {

package/dist/{lzw-COIaKN_E.js → lzw-DJhX6Tr-.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-BYPSbKAg.js";
+import { B as BaseDecoder } from "./index-GwbVVPa9.js";
 const MIN_BITS = 9;
 const CLEAR_CODE = 256;
 const EOI_CODE = 257;

package/dist/{packbits-Cg6ncl2O.js → packbits-BOwAxrqR.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-BYPSbKAg.js";
+import { B as BaseDecoder } from "./index-GwbVVPa9.js";
 class PackbitsDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     const dataView = new DataView(buffer);

package/dist/{raw-4Cprab4h.js → raw-BX1y7Iy_.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-BYPSbKAg.js";
+import { B as BaseDecoder } from "./index-GwbVVPa9.js";
 class RawDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return buffer;

package/dist/{webimage-DsCsw_bd.js → webimage-DCU5-f3Q.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-BYPSbKAg.js";
+import { B as BaseDecoder } from "./index-GwbVVPa9.js";
 class WebImageDecoder extends BaseDecoder {
   constructor() {
     super();

package/dist-tsc/Vitessce.js

@@ -47,3 +47,4 @@ export function Vitessce(props) {
     ]), [pluginAsyncFunctionsProp]);
     return (_jsx(VitSContainer, { ...props, config: configOrWarning, viewTypes: mergedPluginViewTypes, fileTypes: mergedPluginFileTypes, jointFileTypes: mergedPluginJointFileTypes, coordinationTypes: mergedPluginCoordinationTypes, asyncFunctions: mergedPluginAsyncFunctions, warning: (success ? null : configOrWarning) }));
 }
+//# sourceMappingURL=Vitessce.js.map

package/dist-tsc/Vitessce.js.map

@@ -0,0 +1 @@
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package/dist-tsc/base-plugins.d.ts.map

@@ -1 +1 @@
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package/dist-tsc/base-plugins.js

@@ -177,6 +177,7 @@ export const baseFileTypes = [
     makeFileType(FileType.OBS_LABELS_MOLECULES_JSON, DataType.OBS_LABELS, MoleculesJsonAsObsLabelsLoader, JsonSource, z.null()),
     makeFileType(FileType.NEIGHBORHOODS_JSON, DataType.NEIGHBORHOODS, JsonLoader, JsonSource, z.null()),
     makeFileType(FileType.GENOMIC_PROFILES_ZARR, DataType.GENOMIC_PROFILES, GenomicProfilesZarrLoader, ZarrDataSource, z.null()),
+    makeFileType(FileType.GENOMIC_PROFILES_ZARR_ZIP, DataType.GENOMIC_PROFILES, GenomicProfilesZarrLoader, ZarrDataSource, z.null()),
 ];
 export const baseJointFileTypes = [
     new PluginJointFileType(FileType.ANNDATA_ZARR, expandAnndataZarr, anndataZarrSchema),
@@ -366,3 +367,4 @@ export const baseAsyncFunctions = [
     new PluginAsyncFunction(AsyncFunctionType.GET_ALTERNATIVE_TERMS, getAlternativeTerms),
     new PluginAsyncFunction(AsyncFunctionType.GET_TERM_MAPPING, getTermMapping),
 ];
+//# sourceMappingURL=base-plugins.js.map

package/dist-tsc/base-plugins.js.map

@@ -0,0 +1 @@
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package/dist-tsc/index.js

@@ -6,3 +6,4 @@ export { useCoordination, useGridItemSize, usePageModeView,
 // for the following functions
 // Reference: https://github.com/keller-mark/use-coordination/issues/37#issuecomment-1946226827
 useComplexCoordination, useMultiCoordinationScopesNonNull, useMultiCoordinationScopesSecondaryNonNull, useComplexCoordinationSecondary, useCoordinationScopes, useCoordinationScopesBy, } from '@vitessce/vit-s';
+//# sourceMappingURL=index.js.map

package/dist-tsc/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AACzC,OAAO,EACL,cAAc,EACd,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACnB,mBAAmB,GACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,CAAC,EAAE,MAAM,mBAAmB,CAAC;AACtC,OAAO,EACL,eAAe,EACf,eAAe,EACf,eAAe;AACf,4DAA4D;AAC5D,8BAA8B;AAC9B,+FAA+F;AAC/F,sBAAsB,EACtB,iCAAiC,EACjC,0CAA0C,EAC1C,+BAA+B,EAC/B,qBAAqB,EACrB,uBAAuB,GACxB,MAAM,iBAAiB,CAAC"}

package/dist-tsc/joint-file-types-legacy.js

@@ -264,3 +264,4 @@ export function expandAnndataExpressionMatrixZarr(fileDef) {
         },
     ];
 }
+//# sourceMappingURL=joint-file-types-legacy.js.map

package/dist-tsc/joint-file-types-legacy.js.map

@@ -0,0 +1 @@
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package/dist-tsc/joint-file-types-legacy.test.js

@@ -399,3 +399,4 @@ describe('src/app/joint-file-types-legacy.js', () => {
         });
     });
 });
+//# sourceMappingURL=joint-file-types-legacy.test.js.map

package/dist-tsc/joint-file-types-legacy.test.js.map

@@ -0,0 +1 @@
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package/dist-tsc/joint-file-types.js

@@ -400,3 +400,4 @@ export function expandSpatialdataZarr(fileDef) {
             }] : []),
     ];
 }
+//# sourceMappingURL=joint-file-types.js.map

package/dist-tsc/joint-file-types.js.map

@@ -0,0 +1 @@
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package/dist-tsc/joint-file-types.test.js

@@ -126,3 +126,4 @@ describe('src/app/joint-file-types.js', () => {
         });
     });
 });
+//# sourceMappingURL=joint-file-types.test.js.map

package/dist-tsc/joint-file-types.test.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"joint-file-types.test.js","sourceRoot":"","sources":["../src/joint-file-types.test.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,EAAE,EAAE,EAAE,MAAM,QAAQ,CAAC;AAC9C,OAAO,EACL,iBAAiB,GAClB,MAAM,uBAAuB,CAAC;AAG/B,QAAQ,CAAC,6BAA6B,EAAE,GAAG,EAAE;IAC3C,QAAQ,CAAC,mBAAmB,EAAE,GAAG,EAAE;QACjC,EAAE,CAAC,2CAA2C,EAAE,GAAG,EAAE;YACnD,MAAM,CAAC,iBAAiB,CAAC;gBACvB,QAAQ,EAAE,cAAc;gBACxB,GAAG,EAAE,oCAAoC;aAC1C,CAAC,CAAC,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC;QAClB,CAAC,CAAC,CAAC;QACH,EAAE,CAAC,8CAA8C,EAAE,GAAG,EAAE;YACtD,MAAM,CAAC,iBAAiB,CAAC;gBACvB,QAAQ,EAAE,cAAc;gBACxB,GAAG,EAAE,oCAAoC;gBACzC,OAAO,EAAE;oBACP,SAAS,EAAE;wBACT,IAAI,EAAE,eAAe;qBACtB;oBACD,aAAa,EAAE;wBACb,IAAI,EAAE,iBAAiB;qBACxB;oBACD,YAAY,EAAE;wBACZ,IAAI,EAAE,UAAU;wBAChB,IAAI,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC;qBACb;iBACF;gBACD,kBAAkB,EAAE;oBAClB,OAAO,EAAE,MAAM;oBACf,WAAW,EAAE,YAAY;oBACzB,aAAa,EAAE,UAAU;oBACzB,iBAAiB,EAAE,YAAY;oBAC/B,aAAa,EAAE,KAAK;iBACrB;aACF,CAAC,CAAC,CAAC,OAAO,CAAC;gBACV;oBACE,QAAQ,EAAE,2BAA2B;oBACrC,GAAG,EAAE,oCAAoC;oBACzC,OAAO,EAAE;wBACP,IAAI,EAAE,UAAU;wBAChB,IAAI,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC;qBACb;oBACD,kBAAkB,EAAE;wBAClB,OAAO,EAAE,MAAM;wBACf,aAAa,EAAE,KAAK;qBACrB;iBACF;gBACD;oBACE,QAAQ,EAAE,wBAAwB;oBAClC,GAAG,EAAE,oCAAoC;oBACzC,OAAO,EAAE;wBACP,IAAI,EAAE,eAAe;qBACtB;oBACD,kBAAkB,EAAE;wBAClB,OAAO,EAAE,MAAM;wBACf,aAAa,EAAE,UAAU;qBAC1B;iBACF;gBACD;oBACE,QAAQ,EAAE,4BAA4B;oBACtC,GAAG,EAAE,oCAAoC;oBACzC,OAAO,EAAE;wBACP,IAAI,EAAE,iBAAiB;qBACxB;oBACD,kBAAkB,EAAE;wBAClB,WAAW,EAAE,YAAY;wBACzB,iBAAiB,EAAE,YAAY;qBAChC;iBACF;aACF,CAAC,CAAC;QACL,CAAC,CAAC,CAAC;QACH,EAAE,CAAC,wDAAwD,EAAE,GAAG,EAAE;YAChE,MAAM,CAAC,iBAAiB,CAAC;gBACvB,QAAQ,EAAE,cAAc;gBACxB,GAAG,EAAE,oCAAoC;gBACzC,OAAO,EAAE;oBACP,YAAY,EAAE;wBACZ,IAAI,EAAE,SAAS;qBAChB;oBACD,YAAY,EAAE;wBACZ;4BACE,IAAI,EAAE,UAAU;4BAChB,IAAI,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC;4BACZ,aAAa,EAAE,KAAK;yBACrB;wBACD;4BACE,IAAI,EAAE,WAAW;4BACjB,aAAa,EAAE,MAAM;yBACtB;qBACF;iBACF;aACF,CAAC,CAAC,CAAC,OAAO,CAAC;gBACV;oBACE,QAAQ,EAAE,2BAA2B;oBACrC,GAAG,EAAE,oCAAoC;oBACzC,OAAO,EAAE;wBACP,IAAI,EAAE,SAAS;qBAChB;oBACD,kBAAkB,EAAE;wBAClB,OAAO,EAAE,MAAM;qBAChB;iBACF;gBACD;oBACE,QAAQ,EAAE,2BAA2B;oBACrC,GAAG,EAAE,oCAAoC;oBACzC,OAAO,EAAE;wBACP,IAAI,EAAE,UAAU;wBAChB,IAAI,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC;qBACb;oBACD,kBAAkB,EAAE;wBAClB,OAAO,EAAE,MAAM;wBACf,aAAa,EAAE,KAAK;qBACrB;iBACF;gBACD;oBACE,QAAQ,EAAE,2BAA2B;oBACrC,GAAG,EAAE,oCAAoC;oBACzC,OAAO,EAAE;wBACP,IAAI,EAAE,WAAW;qBAClB;oBACD,kBAAkB,EAAE;wBAClB,OAAO,EAAE,MAAM;wBACf,aAAa,EAAE,MAAM;qBACtB;iBACF;aACF,CAAC,CAAC;QACL,CAAC,CAAC,CAAC;IACL,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC"}

package/dist-tsc/latest-config-schema.test.js

@@ -17,3 +17,4 @@ describe('view config schema', () => {
         });
     });
 });
+//# sourceMappingURL=latest-config-schema.test.js.map

package/dist-tsc/latest-config-schema.test.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"latest-config-schema.test.js","sourceRoot":"","sources":["../src/latest-config-schema.test.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,EAAE,EAAE,EAAE,MAAM,QAAQ,CAAC;AAE9C,OAAO,EAAE,gBAAgB,EAAE,MAAM,8BAA8B,CAAC;AAChE,OAAO,EACL,qBAAqB,GACtB,MAAM,mBAAmB,CAAC;AAE3B,QAAQ,CAAC,oBAAoB,EAAE,GAAG,EAAE;IAClC,QAAQ,CAAC,oBAAoB,EAAE,GAAG,EAAE;QAClC,EAAE,CAAC,iDAAiD,EAAE,GAAG,EAAE;YACzD,MAAM,kCAAkC,GAAG,MAAM,CAAC,MAAM,CAAC,gBAAgB,CAAC,CAAC,IAAI,EAAE,CAAC;YAClF,MAAM,oCAAoC,GAAG,qBAAqB,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,IAAI,EAAE,CAAC;YAE7F,MAAM,CAAC,kCAAkC,CAAC;iBACvC,OAAO,CAAC,MAAM,CAAC,eAAe,CAAC,oCAAoC,CAAC,CAAC,CAAC;QAC3E,CAAC,CAAC,CAAC;QAEH,EAAE,CAAC,wEAAwE,EAAE,GAAG,EAAE;YAChF,MAAM,kCAAkC,GAAG,MAAM,CAAC,MAAM,CAAC,gBAAgB,CAAC,CAAC,IAAI,EAAE,CAAC;YAClF,MAAM,oCAAoC,GAAG,qBAAqB,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,IAAI,EAAE,CAAC;YAE7F,MAAM,CAAC,oCAAoC,CAAC;iBACzC,OAAO,CAAC,MAAM,CAAC,eAAe,CAAC,kCAAkC,CAAC,CAAC,CAAC;QACzE,CAAC,CAAC,CAAC;IACL,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/all",
-  "version": "4.0.0-test.2",
+  "version": "4.0.0",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -17,43 +17,43 @@
   ],
   "dependencies": {
     "zod": "^3.21.4",
-    "@vitessce/constants-internal": "4.0.0-test.2",
-    "@vitessce/styles": "4.0.0-test.2",
-    "@vitessce/genomic-profiles": "4.0.0-test.2",
-    "@vitessce/error": "4.0.0-test.2",
-    "@vitessce/abstract": "4.0.0-test.2",
-    "@vitessce/heatmap": "4.0.0-test.2",
-    "@vitessce/description": "4.0.0-test.2",
-    "@vitessce/glb": "4.0.0-test.2",
-    "@vitessce/feature-list": "4.0.0-test.2",
-    "@vitessce/csv": "4.0.0-test.2",
-    "@vitessce/layer-controller": "4.0.0-test.2",
-    "@vitessce/json": "4.0.0-test.2",
-    "@vitessce/link-controller": "4.0.0-test.2",
-    "@vitessce/layer-controller-beta": "4.0.0-test.2",
-    "@vitessce/obs-sets-manager": "4.0.0-test.2",
-    "@vitessce/scatterplot-embedding": "4.0.0-test.2",
-    "@vitessce/spatial-beta": "4.0.0-test.2",
-    "@vitessce/statistical-plots": "4.0.0-test.2",
-    "@vitessce/status": "4.0.0-test.2",
-    "@vitessce/vit-s": "4.0.0-test.2",
-    "@vitessce/spatial": "4.0.0-test.2",
-    "@vitessce/globals": "4.0.0-test.2",
-    "@vitessce/spatial-accelerated": "4.0.0-test.2",
-    "@vitessce/ome-tiff": "4.0.0-test.2",
-    "@vitessce/schemas": "4.0.0-test.2",
-    "@vitessce/plugins": "4.0.0-test.2",
-    "@vitessce/biomarker-select": "4.0.0-test.2",
-    "@vitessce/zarr": "4.0.0-test.2",
-    "@vitessce/scatterplot-gating": "4.0.0-test.2",
-    "@vitessce/spatial-zarr": "4.0.0-test.2",
-    "@vitessce/spatial-three": "4.0.0-test.2",
-    "@vitessce/neuroglancer": "4.0.0-test.2"
+    "@vitessce/styles": "4.0.0",
+    "@vitessce/constants-internal": "4.0.0",
+    "@vitessce/csv": "4.0.0",
+    "@vitessce/description": "4.0.0",
+    "@vitessce/genomic-profiles": "4.0.0",
+    "@vitessce/error": "4.0.0",
+    "@vitessce/heatmap": "4.0.0",
+    "@vitessce/abstract": "4.0.0",
+    "@vitessce/glb": "4.0.0",
+    "@vitessce/feature-list": "4.0.0",
+    "@vitessce/layer-controller-beta": "4.0.0",
+    "@vitessce/json": "4.0.0",
+    "@vitessce/obs-sets-manager": "4.0.0",
+    "@vitessce/link-controller": "4.0.0",
+    "@vitessce/ome-tiff": "4.0.0",
+    "@vitessce/layer-controller": "4.0.0",
+    "@vitessce/scatterplot-embedding": "4.0.0",
+    "@vitessce/plugins": "4.0.0",
+    "@vitessce/scatterplot-gating": "4.0.0",
+    "@vitessce/schemas": "4.0.0",
+    "@vitessce/spatial": "4.0.0",
+    "@vitessce/spatial-beta": "4.0.0",
+    "@vitessce/statistical-plots": "4.0.0",
+    "@vitessce/status": "4.0.0",
+    "@vitessce/globals": "4.0.0",
+    "@vitessce/vit-s": "4.0.0",
+    "@vitessce/zarr": "4.0.0",
+    "@vitessce/spatial-zarr": "4.0.0",
+    "@vitessce/spatial-accelerated": "4.0.0",
+    "@vitessce/biomarker-select": "4.0.0",
+    "@vitessce/neuroglancer": "4.0.0",
+    "@vitessce/spatial-three": "4.0.0"
   },
   "devDependencies": {
     "@types/react": "^19.0.0",
-    "react": "19.1.0",
-    "react-dom": "19.1.0",
+    "react": "19.2.6",
+    "react-dom": "19.2.6",
     "vitest": "^3.1.4"
   },
   "peerDependencies": {

package/src/base-plugins.ts

@@ -366,6 +366,7 @@ export const baseFileTypes = [
   makeFileType(FileType.OBS_LABELS_MOLECULES_JSON, DataType.OBS_LABELS, MoleculesJsonAsObsLabelsLoader, JsonSource, z.null()),
   makeFileType(FileType.NEIGHBORHOODS_JSON, DataType.NEIGHBORHOODS, JsonLoader, JsonSource, z.null()),
   makeFileType(FileType.GENOMIC_PROFILES_ZARR, DataType.GENOMIC_PROFILES, GenomicProfilesZarrLoader, ZarrDataSource, z.null()),
+  makeFileType(FileType.GENOMIC_PROFILES_ZARR_ZIP, DataType.GENOMIC_PROFILES, GenomicProfilesZarrLoader, ZarrDataSource, z.null()),
 ];
 
 export const baseJointFileTypes = [