@vitessce/all 3.9.2 → 3.9.4

package/dist/index.js

@@ -1,4 +1,4 @@
-import { bR, bP, bN, bQ, bO, bM, bS } from "./index-DKpg3n-y.js";
+import { bR, bP, bN, bQ, bO, bM, bS } from "./index-DMwHBnRb.js";
 import { useComplexCoordination, useComplexCoordinationSecondary, useCoordination, useCoordinationScopes, useCoordinationScopesBy, useGridItemSize, useMultiCoordinationScopesNonNull, useMultiCoordinationScopesSecondaryNonNull, usePageModeView } from "@vitessce/vit-s";
 export {
   bR as PluginAsyncFunction,

package/dist/{jpeg-DeFocpVz.js → jpeg-GtoIw4IT.js}

@@ -1,4 +1,4 @@
-import { aX as BaseDecoder } from "./index-DKpg3n-y.js";
+import { aX as BaseDecoder } from "./index-DMwHBnRb.js";
 const dctZigZag = new Int32Array([
   0,
   1,

package/dist/{lerc-BCstSar4.js → lerc-DcSwwDzY.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { aG as getDefaultExportFromCjs, aX as BaseDecoder, aY as LercParameters, aZ as LercAddCompression } from "./index-DKpg3n-y.js";
+import { aG as getDefaultExportFromCjs, aX as BaseDecoder, aY as LercParameters, aZ as LercAddCompression } from "./index-DMwHBnRb.js";
 var LercDecode = { exports: {} };
 var hasRequiredLercDecode;
 function requireLercDecode() {

package/dist/{lzw-CMvKxrGF.js → lzw-D6__ol7A.js}

@@ -1,4 +1,4 @@
-import { aX as BaseDecoder } from "./index-DKpg3n-y.js";
+import { aX as BaseDecoder } from "./index-DMwHBnRb.js";
 const MIN_BITS = 9;
 const CLEAR_CODE = 256;
 const EOI_CODE = 257;

package/dist/{packbits-Crf3i8qg.js → packbits-qyK2t5DY.js}

@@ -1,4 +1,4 @@
-import { aX as BaseDecoder } from "./index-DKpg3n-y.js";
+import { aX as BaseDecoder } from "./index-DMwHBnRb.js";
 class PackbitsDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     const dataView = new DataView(buffer);

package/dist/{raw-QxVylWDO.js → raw-DITpx3I3.js}

@@ -1,4 +1,4 @@
-import { aX as BaseDecoder } from "./index-DKpg3n-y.js";
+import { aX as BaseDecoder } from "./index-DMwHBnRb.js";
 class RawDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return buffer;

package/dist/{troika-three-text.esm-1SLW0Iby.js → troika-three-text.esm-BX5BPsT5.js}

@@ -1,4 +1,4 @@
-import { bH as MeshDistanceMaterial, bI as MeshDepthMaterial, bJ as RGBADepthPacking, ae as UniformsUtils, bK as ShaderChunk, a9 as InstancedBufferGeometry, a8 as Sphere, a7 as Box3, am as BackSide, u as DoubleSide, z as Mesh, a5 as FrontSide, v as MeshBasicMaterial, C as Color, e as Vector3, M as Matrix4, V as Vector2, ap as Matrix3, ag as Vector4, a1 as Texture, l as LinearFilter, aD as PlaneGeometry, x as BufferGeometry, aa as Float32BufferAttribute, bL as InstancedBufferAttribute } from "./index-DKpg3n-y.js";
+import { bH as MeshDistanceMaterial, bI as MeshDepthMaterial, bJ as RGBADepthPacking, ae as UniformsUtils, bK as ShaderChunk, a9 as InstancedBufferGeometry, a8 as Sphere, a7 as Box3, am as BackSide, u as DoubleSide, z as Mesh, a5 as FrontSide, v as MeshBasicMaterial, C as Color, e as Vector3, M as Matrix4, V as Vector2, ap as Matrix3, ag as Vector4, a1 as Texture, l as LinearFilter, aD as PlaneGeometry, x as BufferGeometry, aa as Float32BufferAttribute, bL as InstancedBufferAttribute } from "./index-DMwHBnRb.js";
 function workerBootstrap() {
   var modules = /* @__PURE__ */ Object.create(null);
   function registerModule(ref, callback) {

package/dist/{webimage-DJBIWr5d.js → webimage-DggQ0O5v.js}

@@ -1,4 +1,4 @@
-import { aX as BaseDecoder } from "./index-DKpg3n-y.js";
+import { aX as BaseDecoder } from "./index-DMwHBnRb.js";
 class WebImageDecoder extends BaseDecoder {
   constructor() {
     super();

package/dist-tsc/base-plugins.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"base-plugins.d.ts","sourceRoot":"","sources":["../src/base-plugins.ts"],"names":[],"mappings":"AAWA,OAAO,EACL,cAAc,EACd,mBAAmB,EACnB,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,KAAK,EACV,UAAU,EACV,UAAU,EACX,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,CAAC,EAqDF,MAAM,mBAAmB,CAAC;AAoL3B,eAAO,MAAM,aAAa,kBA+BzB,CAAC;AAEF,eAAO,MAAM,aAAa,wDA2EzB,CAAC;AAEF,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yBA6GhB,CAAC;gCAAuD,CAAA;;;yBAE/C,CAAC;gCAGf,CAAC;;;;;;;;;;;;;;;;iBAqBmC,CAAC;;;;iBACsC,CAAC;;;;;;;YAQhF,CAAH;;;YAEO,CAAC;;;;;;;YAQmB,CAAC;;;YAAmE,CAAC;;;;;;;YAM7B,CAAC;;;YAAmE,CAAC;;;;;;;;;;;;;;YAiBpI,CAAC;;;YAIJ,CAAC;;;;;;;;YAUqB,CAAC;;;;YAKvB,CAAC;;;;;;;;;;;;;;;;;;;;;;;;yBAUO,CAAC;gCAAsD,CAAC;;;;;;;;iBAGrC,CAAC;;;;YACG,CAAC;;;;YACD,CAAC;;;;YACA,CAAC;;;;;;;YACuD,CAAC;;;;YAEzF,CAAC;;;;;;;;;;;;;;;;;;;;yBAIG,CAAC;gCAAsD,CAAC;;;;;;;;iBAEmB,CAAC;;;;YACK,CAAC;;;;YACxB,CAAC;;;;YAC/B,CAAC;;;;;;;YAE9B,CAAC;;;;YACe,CAAC;;;;;;;;;;;wBA0DsnE,CAAC;;;wBAA6E,CAAC;;;;;;;;iBAAwR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;iBAA+X,CAAC;wBAA8C,CAAC;0BAAgD,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;0BAAgD,CAAC;wBAA8C,CAAC;;;;;;;;;;yBAAkZ,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;yBAA8E,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;;;;;iBAAgR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;;;qBAAygB,CAAC;;;;qBAA2J,CAAC;;;;;;qBAAsN,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;qBAA0K,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;;YAAoP,CAAC;;;YAAmE,CAAC;;;;;;;;YAAuR,CAAC;;;;YAAkG,CAAC;;;;;;;;;;;;;;;;;;;;;;wBAAmoB,CAAC;;;;iBAAyG,CAAC;wBAA8C,CAAC;;;;iBAAkG,CAAC;wBAA8C,CAAC;0BAAgD,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;YAAgG,CAAC;;;;YAAmG,CAAC;;;;;;;;;;;;wBAA6R,CAAC;;;;iBAAyG,CAAC;wBAA8C,CAAC;;;;iBAAkG,CAAC;wBAA8C,CAAC;0BAAgD,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;YAAgG,CAAC;;;;YAAmG,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBApjB11T,CAAC;;;;;qBAGkB,CAAC;qBAA4C,CAAC;;;;;;;;;qBAI/B,CAAC;6BAAoD,CAAC;;sBAClC,CAAC;;;;;qBAQzC,CAAC;qBAEZ,CAAC;;;;;;;;;qBAWD,CAAC;6BAEK,CAAC;;;;;;;;;;;;;kBAuBH,CAAA;mBAGE,CAAC;gBACkB,CAAC;gBAEzB,CAAC;uBAEH,CAAF;iBACU,CAAC;oBACS,CAAC;oBAER,CAAC;qBAEZ,CAAF;;kBAC0B,CAAC;mBAEvB,CAAC;gBACmB,CAAC;gBAGlB,CAAC;uBAEe,CAAC;iBACC,CAAC;oBAIrB,CAAA;oBAEgB,CAAC;qBAET,CAAC;;;;;;gBAMZ,CAAD;sBAA0B,CAAC;;;;;qBAOR,CAAC;qBAGjB,CAAC;;;;;;;;;qBAaoB,CAAC;6BAEZ,CAAC;;mBAGb,CAAC;kBACD,CAAC;mBACuB,CAAC;gBAGhB,CAAC;gBACa,CAAC;uBAGxB,CAAA;iBACa,CAAC;oBAEd,CAAF;oBAEE,CAAA;qBACa,CAAC;;;;;;gBAMW,CAAA;sBAG3B,CADC;;;;;qBAE2F,CAAC;qBAG1D,CAAC;;;;;;;;;qBAEpC,CAAC;6BACkD,CAAC;;mBACpB,CAAC;kBAAsB,CAAC;mBAChB,CAAC;gBAAmD,CAAC;gBAAsC,CAAC;uBAA6C,CAAC;iBACjJ,CAAC;oBAE9B,CAAD;oBAA0C,CAAC;qBAC5C,CAAA;;;;;;;;;gBAIkC,CAAC;sBAA0B,CAAC;;;;;qBAK9D,CAAA;qBAIK,CAAC;;;;;;;;;qBAGqD,CAAC;6BAC3B,CAAC;;mBACa,CAAC;kBAC/B,CAAC;mBAClB,CAAF;gBAAmD,CAAC;gBACd,CAAA;uBACjB,CAAC;iBAAuC,CAAC;oBAC5B,CAAC;oBAA0C,CAAC;qBACpC,CAAC;;;;;;;;;;;gBAIrB,CAAC;sBAA0B,CAAC;;;;;qBAItC,CAAC;qBAA4C,CAAC;;;;;;;;;qBAIvC,CAAC;6BAChB,CAAC;;mBACC,CAAC;kBAAsB,CAAC;mBACZ,CAAC;gBAAmD,CAAC;gBACtC,CAAC;uBAA6C,CAAC;iBAC3C,CAAC;oBAA0C,CAAC;oBAClD,CAAC;qBAA2C,CAAC;;;;;;;;;;;;;;OAkG3E,CAAC;AAIF,eAAO,MAAM,qBAAqB;;;;;;;;aAhXtB,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cACQ,CAAC;eACW,CAAC;;;;;;;;;;;;;;;;;;;aAqBE,CAAC;cAC1B,CAAC;eAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;aApE/B,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cACQ,CAAC;eACW,CAAC;;;;;;;;;;;;;;;;;;;aAqBE,CAAC;cAC1B,CAAC;eAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kzBA2iB1C,CAAC;AAEF,eAAO,MAAM,kBAAkB,uBAK9B,CAAC"}

package/dist-tsc/base-plugins.js

@@ -43,7 +43,7 @@ NgPrecomputedMeshSource, NgPrecomputedMeshLoader, } from '@vitessce/spatial-zarr
 import { OmeTiffAsObsSegmentationsLoader, OmeTiffLoader, OmeTiffSource, } from '@vitessce/ome-tiff';
 import { GlbSource, GlbLoader, } from '@vitessce/glb';
 // Joint file types
-import { BiomarkerSelectSubscriber, ComparativeHeadingSubscriber, SampleSetPairManagerSubscriber, autocompleteFeature, transformFeature, getAlternativeTerms, getTermMapping, } from '@vitessce/biomarker-select';
+import { BiomarkerSelectSubscriber, BiomarkerSelectAltSubscriber, ComparativeHeadingSubscriber, SampleSetPairManagerSubscriber, autocompleteFeature, transformFeature, getAlternativeTerms, getTermMapping, } from '@vitessce/biomarker-select';
 import { expandAnndataZarr, expandSpatialdataZarr, } from './joint-file-types.js';
 import { expandAnndataCellSetsZarr, expandAnndataCellsZarr, expandAnndataExpressionMatrixZarr, expandCellSetsJson, expandCellsJson, expandClustersJson, expandExpressionMatrixZarr, expandGenesJson, expandMoleculesJson, expandRasterJson, expandRasterOmeZarr, } from './joint-file-types-legacy.js';
 // Biomarker select UI and default async functions.
@@ -94,6 +94,7 @@ export const baseViewTypes = [
     makeViewType(ViewType.VOLCANO_PLOT, VolcanoPlotSubscriber),
     makeViewType(ViewType.FEATURE_STATS_TABLE, FeatureStatsTableSubscriber),
     makeViewType(ViewType.BIOMARKER_SELECT, BiomarkerSelectSubscriber),
+    makeViewType(ViewType.BIOMARKER_SELECT_ALT, BiomarkerSelectAltSubscriber),
     makeViewType(ViewType.LINK_CONTROLLER, LinkControllerSubscriber),
     makeViewType(ViewType.NEUROGLANCER, NeuroglancerSubscriber),
     makeViewType(ViewType.TREEMAP, TreemapSubscriber),

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/all",
-  "version": "3.9.2",
+  "version": "3.9.4",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -17,38 +17,38 @@
   ],
   "dependencies": {
     "zod": "^3.21.4",
-    "@vitessce/constants-internal": "3.9.2",
-    "@vitessce/abstract": "3.9.2",
-    "@vitessce/styles": "3.9.2",
-    "@vitessce/error": "3.9.2",
-    "@vitessce/csv": "3.9.2",
-    "@vitessce/description": "3.9.2",
-    "@vitessce/genomic-profiles": "3.9.2",
-    "@vitessce/feature-list": "3.9.2",
-    "@vitessce/heatmap": "3.9.2",
-    "@vitessce/glb": "3.9.2",
-    "@vitessce/json": "3.9.2",
-    "@vitessce/layer-controller": "3.9.2",
-    "@vitessce/layer-controller-beta": "3.9.2",
-    "@vitessce/plugins": "3.9.2",
-    "@vitessce/obs-sets-manager": "3.9.2",
-    "@vitessce/ome-tiff": "3.9.2",
-    "@vitessce/link-controller": "3.9.2",
-    "@vitessce/scatterplot-gating": "3.9.2",
-    "@vitessce/scatterplot-embedding": "3.9.2",
-    "@vitessce/spatial": "3.9.2",
-    "@vitessce/schemas": "3.9.2",
-    "@vitessce/statistical-plots": "3.9.2",
-    "@vitessce/status": "3.9.2",
-    "@vitessce/vit-s": "3.9.2",
-    "@vitessce/globals": "3.9.2",
-    "@vitessce/spatial-beta": "3.9.2",
-    "@vitessce/spatial-zarr": "3.9.2",
-    "@vitessce/spatial-three": "3.9.2",
-    "@vitessce/zarr": "3.9.2",
-    "@vitessce/spatial-accelerated": "3.9.2",
-    "@vitessce/biomarker-select": "3.9.2",
-    "@vitessce/neuroglancer": "3.9.2"
+    "@vitessce/styles": "3.9.4",
+    "@vitessce/constants-internal": "3.9.4",
+    "@vitessce/abstract": "3.9.4",
+    "@vitessce/error": "3.9.4",
+    "@vitessce/csv": "3.9.4",
+    "@vitessce/description": "3.9.4",
+    "@vitessce/feature-list": "3.9.4",
+    "@vitessce/heatmap": "3.9.4",
+    "@vitessce/genomic-profiles": "3.9.4",
+    "@vitessce/glb": "3.9.4",
+    "@vitessce/json": "3.9.4",
+    "@vitessce/layer-controller-beta": "3.9.4",
+    "@vitessce/layer-controller": "3.9.4",
+    "@vitessce/link-controller": "3.9.4",
+    "@vitessce/obs-sets-manager": "3.9.4",
+    "@vitessce/ome-tiff": "3.9.4",
+    "@vitessce/plugins": "3.9.4",
+    "@vitessce/scatterplot-gating": "3.9.4",
+    "@vitessce/scatterplot-embedding": "3.9.4",
+    "@vitessce/schemas": "3.9.4",
+    "@vitessce/spatial": "3.9.4",
+    "@vitessce/spatial-beta": "3.9.4",
+    "@vitessce/statistical-plots": "3.9.4",
+    "@vitessce/status": "3.9.4",
+    "@vitessce/vit-s": "3.9.4",
+    "@vitessce/globals": "3.9.4",
+    "@vitessce/zarr": "3.9.4",
+    "@vitessce/spatial-zarr": "3.9.4",
+    "@vitessce/spatial-three": "3.9.4",
+    "@vitessce/neuroglancer": "3.9.4",
+    "@vitessce/biomarker-select": "3.9.4",
+    "@vitessce/spatial-accelerated": "3.9.4"
   },
   "devDependencies": {
     "@types/react": "^18.0.28",

package/src/base-plugins.ts

@@ -200,6 +200,7 @@ import {
 // Joint file types
 import {
   BiomarkerSelectSubscriber,
+  BiomarkerSelectAltSubscriber,
   ComparativeHeadingSubscriber,
   SampleSetPairManagerSubscriber,
   autocompleteFeature,
@@ -276,6 +277,7 @@ export const baseViewTypes = [
   makeViewType(ViewType.VOLCANO_PLOT, VolcanoPlotSubscriber),
   makeViewType(ViewType.FEATURE_STATS_TABLE, FeatureStatsTableSubscriber),
   makeViewType(ViewType.BIOMARKER_SELECT, BiomarkerSelectSubscriber),
+  makeViewType(ViewType.BIOMARKER_SELECT_ALT, BiomarkerSelectAltSubscriber),
   makeViewType(ViewType.LINK_CONTROLLER, LinkControllerSubscriber),
   makeViewType(ViewType.NEUROGLANCER, NeuroglancerSubscriber),
   makeViewType(ViewType.TREEMAP, TreemapSubscriber),