@vitessce/all 3.8.6 → 3.8.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/{OrbitControls-blC-_luf.js → OrbitControls-BihamWQc.js} +1 -1
- package/dist/{ReactNeuroglancer-BV_821il.js → ReactNeuroglancer-Cd-eoVyU.js} +1 -1
- package/dist/{deflate-CsetZFHb.js → deflate-YfGOvzab.js} +1 -1
- package/dist/{higlass-BYlgWL_Y.js → higlass-n5FnMrCn.js} +1 -1
- package/dist/{index-CHxaVZhJ.js → index-BAP2AnIF.js} +2 -2
- package/dist/{index-VG1RjUEu.js → index-S_FSh1nk.js} +3 -3
- package/dist/{index-Z-pD1WnL.js → index-TF8hfyKX.js} +215 -61
- package/dist/index.js +1 -1
- package/dist/{jpeg-DdeYvQ7M.js → jpeg-CjgDlwi_.js} +1 -1
- package/dist/{lerc-D1O_lzXu.js → lerc-CL4MdbCg.js} +1 -1
- package/dist/{lzw-CE0HuE9L.js → lzw-BCI0B7dw.js} +1 -1
- package/dist/{packbits-z6O-xEjB.js → packbits-DYn86_iq.js} +1 -1
- package/dist/{raw-CRt4_45v.js → raw-awn9z18M.js} +1 -1
- package/dist/{troika-three-text.esm-BsP89YlX.js → troika-three-text.esm-CSvaWiu2.js} +1 -1
- package/dist/{webimage-CLacHpNV.js → webimage-Bo4F4TPe.js} +1 -1
- package/package.json +33 -33
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import { aF as getDefaultExportFromCjs, aG as Raycaster, W as OrthographicCamera, K as PerspectiveCamera, av as Scene, aH as PCFSoftShadowMap, aI as VSMShadowMap, aJ as PCFShadowMap, aK as BasicShadowMap, aL as NoToneMapping, aM as ACESFilmicToneMapping, e as Vector3, V as Vector2, aN as Clock, aO as WebGLRenderer, aP as Camera, x as BufferGeometry, r as Material, aQ as Layers, a1 as Texture, aC as RGBAFormat, ay as UnsignedByteType, C as Color, aj as _extends, aR as THREE, aS as EventDispatcher, aT as MOUSE, aU as TOUCH, aV as Spherical, Q as Quaternion, an as Ray, ak as Plane } from "./index-
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import { aF as getDefaultExportFromCjs, aG as Raycaster, W as OrthographicCamera, K as PerspectiveCamera, av as Scene, aH as PCFSoftShadowMap, aI as VSMShadowMap, aJ as PCFShadowMap, aK as BasicShadowMap, aL as NoToneMapping, aM as ACESFilmicToneMapping, e as Vector3, V as Vector2, aN as Clock, aO as WebGLRenderer, aP as Camera, x as BufferGeometry, r as Material, aQ as Layers, a1 as Texture, aC as RGBAFormat, ay as UnsignedByteType, C as Color, aj as _extends, aR as THREE, aS as EventDispatcher, aT as MOUSE, aU as TOUCH, aV as Spherical, Q as Quaternion, an as Ray, ak as Plane } from "./index-TF8hfyKX.js";
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import * as React from "react";
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import React__default, { useReducer, useRef, useEffect, useLayoutEffect, useDebugValue, useState, useMemo } from "react";
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var constants = { exports: {} };
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import { aF as getDefaultExportFromCjs, b0 as requireAssign, b1 as require_export, b2 as require_core, b3 as require_fails, b4 as require_toObject, b5 as require_objectKeys, b6 as require_cof, b7 as require_wks, b8 as require_iterators, b9 as requireWeb_dom_iterable, ba as requireEs6_string_iterator, bb as require_anObject, bc as require_hide, bd as require_ctx, be as require_toLength, bf as require_global, bg as require_objectDp, bh as require_descriptors, bi as require_isObject, bj as require_objectCreate, bk as require_iterDefine, bl as require_iterStep, bm as require_meta, bn as require_isArray, bo as require_iobject, bp as require_setToStringTag, bq as require_aFunction, br as requireIterator, bs as require_propertyDesc, aZ as commonjsGlobal, bt as requireEs6_symbol, bu as requireDefineProperty, bv as require_toIobject, bw as require_objectGopd, bx as require_html, by as require_domCreate, bz as require_library, bA as requireSymbol, bB as require_objectPie, bC as require_has, bD as require_redefine, bE as require_objectAssign, bF as diffCameraState, ao as jsxRuntimeExports } from "./index-
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import { aF as getDefaultExportFromCjs, b0 as requireAssign, b1 as require_export, b2 as require_core, b3 as require_fails, b4 as require_toObject, b5 as require_objectKeys, b6 as require_cof, b7 as require_wks, b8 as require_iterators, b9 as requireWeb_dom_iterable, ba as requireEs6_string_iterator, bb as require_anObject, bc as require_hide, bd as require_ctx, be as require_toLength, bf as require_global, bg as require_objectDp, bh as require_descriptors, bi as require_isObject, bj as require_objectCreate, bk as require_iterDefine, bl as require_iterStep, bm as require_meta, bn as require_isArray, bo as require_iobject, bp as require_setToStringTag, bq as require_aFunction, br as requireIterator, bs as require_propertyDesc, aZ as commonjsGlobal, bt as requireEs6_symbol, bu as requireDefineProperty, bv as require_toIobject, bw as require_objectGopd, bx as require_html, by as require_domCreate, bz as require_library, bA as requireSymbol, bB as require_objectPie, bC as require_has, bD as require_redefine, bE as require_objectAssign, bF as diffCameraState, ao as jsxRuntimeExports } from "./index-TF8hfyKX.js";
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import React__default from "react";
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var assignExports = requireAssign();
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const _Object$assign = /* @__PURE__ */ getDefaultExportFromCjs(assignExports);
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import { i as inflate_1 } from "./pako.esm-SxljTded.js";
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import { aW as BaseDecoder } from "./index-
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import { aW as BaseDecoder } from "./index-TF8hfyKX.js";
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class DeflateDecoder extends BaseDecoder {
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decodeBlock(buffer) {
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return inflate_1(new Uint8Array(buffer)).buffer;
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import * as React$7 from "react";
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import React__default, { isValidElement, PureComponent, Component, createElement, createContext, createRef } from "react";
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import ReactDOM__default, { findDOMNode as findDOMNode$1 } from "react-dom";
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import { aZ as commonjsGlobal$1, a_ as requireObjectAssign, aF as getDefaultExportFromCjs$1, a$ as earcut } from "./index-
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import { aZ as commonjsGlobal$1, a_ as requireObjectAssign, aF as getDefaultExportFromCjs$1, a$ as earcut } from "./index-TF8hfyKX.js";
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var promise = {};
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var hasRequiredPromise;
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function requirePromise() {
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import { aw as log, ax as isEqual, ar as Data3DTexture, as as RedFormat, ay as UnsignedByteType, l as LinearFilter, az as RedIntegerFormat, aA as UnsignedIntType, m as NearestFilter, e as Vector3, V as Vector2, ag as Vector4, ae as UniformsUtils, aq as CoordinationType, aB as WebGLMultipleRenderTargets, aC as RGBAFormat, av as Scene, W as OrthographicCamera, ad as ShaderMaterial, z as Mesh, aD as PlaneGeometry, ao as jsxRuntimeExports, aE as GLSL3, am as BackSide } from "./index-
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import { aw as log, ax as isEqual, ar as Data3DTexture, as as RedFormat, ay as UnsignedByteType, l as LinearFilter, az as RedIntegerFormat, aA as UnsignedIntType, m as NearestFilter, e as Vector3, V as Vector2, ag as Vector4, ae as UniformsUtils, aq as CoordinationType, aB as WebGLMultipleRenderTargets, aC as RGBAFormat, av as Scene, W as OrthographicCamera, ad as ShaderMaterial, z as Mesh, aD as PlaneGeometry, ao as jsxRuntimeExports, aE as GLSL3, am as BackSide } from "./index-TF8hfyKX.js";
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import { useRef, useState, useMemo, useEffect, useCallback } from "react";
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import { u as useThree, a as useFrame, O as OrbitControls, C as Canvas } from "./OrbitControls-
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import { u as useThree, a as useFrame, O as OrbitControls, C as Canvas } from "./OrbitControls-BihamWQc.js";
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const LogLevel = {
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INFO: "info",
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WARN: "warn",
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import { G as Group, M as Matrix4, T as TrianglesDrawMode, a as TriangleFanDrawMode, b as TriangleStripDrawMode, R as REVISION, L as Loader, c as LoaderUtils, F as FileLoader, d as MeshPhysicalMaterial, V as Vector2, C as Color, S as SpotLight, P as PointLight, D as DirectionalLight, e as Vector3, I as InstancedMesh, Q as Quaternion, O as Object3D, f as TextureLoader, g as ImageBitmapLoader, B as BufferAttribute, h as InterleavedBuffer, i as LinearMipmapLinearFilter, N as NearestMipmapLinearFilter, j as LinearMipmapNearestFilter, k as NearestMipmapNearestFilter, l as LinearFilter, m as NearestFilter, n as RepeatWrapping, o as MirroredRepeatWrapping, p as ClampToEdgeWrapping, q as PointsMaterial, r as Material, s as LineBasicMaterial, t as MeshStandardMaterial, u as DoubleSide, v as MeshBasicMaterial, w as PropertyBinding, x as BufferGeometry, y as SkinnedMesh, z as Mesh, A as LineSegments, E as Line$1, H as LineLoop, J as Points, K as PerspectiveCamera, U as MathUtils, W as OrthographicCamera, X as Skeleton, Y as InterpolateDiscrete, Z as InterpolateLinear, _ as AnimationClip, $ as Bone, a0 as InterleavedBufferAttribute, a1 as Texture, a2 as VectorKeyframeTrack, a3 as QuaternionKeyframeTrack, a4 as NumberKeyframeTrack, a5 as FrontSide, a6 as Interpolant, a7 as Box3, a8 as Sphere, a9 as InstancedBufferGeometry, aa as Float32BufferAttribute, ab as InstancedInterleavedBuffer, ac as WireframeGeometry, ad as ShaderMaterial, ae as UniformsUtils, af as UniformsLib, ag as Vector4, ah as Line3, ai as SphereGeometry, aj as _extends, ak as Plane, al as Triangle, am as BackSide, an as Ray$1, ao as jsxRuntimeExports, ap as Matrix3, aq as CoordinationType, ar as Data3DTexture, as as RedFormat, at as FloatType, au as getImageSize, av as Scene } from "./index-
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import { G as Group, M as Matrix4, T as TrianglesDrawMode, a as TriangleFanDrawMode, b as TriangleStripDrawMode, R as REVISION, L as Loader, c as LoaderUtils, F as FileLoader, d as MeshPhysicalMaterial, V as Vector2, C as Color, S as SpotLight, P as PointLight, D as DirectionalLight, e as Vector3, I as InstancedMesh, Q as Quaternion, O as Object3D, f as TextureLoader, g as ImageBitmapLoader, B as BufferAttribute, h as InterleavedBuffer, i as LinearMipmapLinearFilter, N as NearestMipmapLinearFilter, j as LinearMipmapNearestFilter, k as NearestMipmapNearestFilter, l as LinearFilter, m as NearestFilter, n as RepeatWrapping, o as MirroredRepeatWrapping, p as ClampToEdgeWrapping, q as PointsMaterial, r as Material, s as LineBasicMaterial, t as MeshStandardMaterial, u as DoubleSide, v as MeshBasicMaterial, w as PropertyBinding, x as BufferGeometry, y as SkinnedMesh, z as Mesh, A as LineSegments, E as Line$1, H as LineLoop, J as Points, K as PerspectiveCamera, U as MathUtils, W as OrthographicCamera, X as Skeleton, Y as InterpolateDiscrete, Z as InterpolateLinear, _ as AnimationClip, $ as Bone, a0 as InterleavedBufferAttribute, a1 as Texture, a2 as VectorKeyframeTrack, a3 as QuaternionKeyframeTrack, a4 as NumberKeyframeTrack, a5 as FrontSide, a6 as Interpolant, a7 as Box3, a8 as Sphere, a9 as InstancedBufferGeometry, aa as Float32BufferAttribute, ab as InstancedInterleavedBuffer, ac as WireframeGeometry, ad as ShaderMaterial, ae as UniformsUtils, af as UniformsLib, ag as Vector4, ah as Line3, ai as SphereGeometry, aj as _extends, ak as Plane, al as Triangle, am as BackSide, an as Ray$1, ao as jsxRuntimeExports, ap as Matrix3, aq as CoordinationType, ar as Data3DTexture, as as RedFormat, at as FloatType, au as getImageSize, av as Scene } from "./index-TF8hfyKX.js";
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import * as React from "react";
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import { useRef, useEffect, useState, forwardRef } from "react";
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import { u as useThree, a as useFrame, c as create, e as extend, b as createPortal, O as OrbitControls, C as Canvas } from "./OrbitControls-
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import { u as useThree, a as useFrame, c as create, e as extend, b as createPortal, O as OrbitControls, C as Canvas } from "./OrbitControls-BihamWQc.js";
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const isPromise = (promise) => typeof promise === "object" && typeof promise.then === "function";
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function shallowEqualArrays(arrA, arrB, equal = (a, b) => a === b) {
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const {
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Text: TextMeshImpl,
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preloadFont
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} = suspend(async () => import("./troika-three-text.esm-
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} = suspend(async () => import("./troika-three-text.esm-CSvaWiu2.js"), []);
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const invalidate = useThree(({
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invalidate: invalidate2
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}) => invalidate2);
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const Decoder = await importFn();
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return new Decoder(fileDirectory);
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}
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addDecoder([void 0, 1], () => import("./raw-
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addDecoder(5, () => import("./lzw-
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addDecoder([void 0, 1], () => import("./raw-awn9z18M.js").then((m2) => m2.default));
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addDecoder(5, () => import("./lzw-BCI0B7dw.js").then((m2) => m2.default));
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addDecoder(6, () => {
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throw new Error("old style JPEG compression is not supported.");
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addDecoder(7, () => import("./jpeg-
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addDecoder([8, 32946], () => import("./deflate-
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addDecoder(32773, () => import("./packbits-
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addDecoder(7, () => import("./jpeg-CjgDlwi_.js").then((m2) => m2.default));
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addDecoder([8, 32946], () => import("./deflate-YfGOvzab.js").then((m2) => m2.default));
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addDecoder(32773, () => import("./packbits-DYn86_iq.js").then((m2) => m2.default));
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addDecoder(
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() => import("./lerc-
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() => import("./lerc-CL4MdbCg.js").then(async (m2) => {
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);
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addDecoder(50001, () => import("./webimage-
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addDecoder(50001, () => import("./webimage-Bo4F4TPe.js").then((m2) => m2.default));
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function copyNewSize(array2, width2, height2, samplesPerPixel = 1) {
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return new (Object.getPrototypeOf(array2)).constructor(width2 * height2 * samplesPerPixel);
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}
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return jsxRuntimeExports.jsx("table", { children: jsxRuntimeExports.jsx("tbody", { children: Object.entries(mappedInfo).map(([key2, value2]) => jsxRuntimeExports.jsxs("tr", { children: [jsxRuntimeExports.jsx("th", { children: key2 }), jsxRuntimeExports.jsx("td", { children: value2 })] }, key2)) }) });
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}
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function ScatterplotTooltipSubscriber(props) {
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const { parentUuid, obsHighlight, width: width2, height: height2, getObsInfo, featureType, featureLabelsMap } = props;
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const { parentUuid, obsHighlight, width: width2, height: height2, getObsInfo: getObsInfo2, featureType, featureLabelsMap } = props;
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const viewInfo = useComponentViewInfo(parentUuid);
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const [cellInfo, x2, y2] = obsHighlight &&
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const [cellInfo, x2, y2] = obsHighlight && getObsInfo2 ? [
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getObsInfo2(obsHighlight),
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...viewInfo && viewInfo.projectFromId ? viewInfo.projectFromId(obsHighlight) : [null, null]
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] : [null, null, null];
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return cellInfo ? jsxRuntimeExports.jsx(Tooltip2D, { x: x2, y: y2, parentUuid, sourceUuid, parentWidth: width2, parentHeight: height2, children: jsxRuntimeExports.jsx(TooltipContent, { info: cellInfo, featureType, featureLabelsMap }) }) : null;
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const getObsInfo2 = useGetObsInfo(observationsLabel, obsLabelsTypes, obsLabelsData, obsSetsMembership);
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const cellSelectionSet = useMemo$1(() => new Set(cellSelection), [cellSelection]);
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const getCellIsSelected = useCallback((object2, { index: index2 }) => (cellSelectionSet || /* @__PURE__ */ new Set([])).has(obsEmbeddingIndex[index2]) ? 1 : 0, [cellSelectionSet, obsEmbeddingIndex]);
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const cellRadius = cellRadiusMode === "manual" ? cellRadiusFixed : dynamicCellRadius;
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}), tooltipsVisible && width2 && height2 ? jsxRuntimeExports.jsx(ScatterplotTooltipSubscriber, { parentUuid: uuid2, obsHighlight: cellHighlight, width: width2, height: height2, getObsInfo, featureType, featureLabelsMap }) : null, jsxRuntimeExports.jsx(Legend, {
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}), tooltipsVisible && width2 && height2 ? jsxRuntimeExports.jsx(ScatterplotTooltipSubscriber, { parentUuid: uuid2, obsHighlight: cellHighlight, width: width2, height: height2, getObsInfo: getObsInfo2, featureType, featureLabelsMap }) : null, jsxRuntimeExports.jsx(Legend, {
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const selectedTransformName = VALUE_TRANSFORM_OPTIONS.find((o2) => o2.value === featureValueTransform)?.name;
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const genePrefix = featureValueTransform ? `${selectedTransformName} ` : "";
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}, gatingFeatureValueTransformCoefficient: featureValueTransformCoefficient, setGatingFeatureValueTransformCoefficient: setFeatureValueTransformCoefficient, geneSelectOptions: featureIndex, transformOptions: VALUE_TRANSFORM_OPTIONS }) }), children: [jsxRuntimeExports.jsx(EmptyMessage, { visible: !(gatingFeatureSelectionX && gatingFeatureSelectionY), message: `Select two ${pluralize(featureType, 2)} in the plot settings.` }), jsxRuntimeExports.jsx(ScatterplotWrapper, { ref: deckRef, uuid: uuid2, theme, hideTools: !(gatingFeatureSelectionX && gatingFeatureSelectionY), hideRecenter: !(gatingFeatureSelectionX && gatingFeatureSelectionY), viewState: { zoom: zoom2, target: [targetX2, targetY2, targetZ] }, setViewState, originalViewState, obsEmbeddingIndex: obsIndex, obsEmbedding: obsXY, cellFilter, cellSelection, cellHighlight, cellColors, cellSetPolygons, cellSetLabelSize, cellSetLabelsVisible, cellSetPolygonsVisible, setCellFilter, setCellSelection: setCellSelectionProp, setCellHighlight, cellRadius, cellOpacity, cellColorEncoding, geneExpressionColormap, geneExpressionColormapRange, setComponentHover: () => {
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setComponentHover(uuid2);
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}, updateViewInfo: setComponentViewInfo, getExpressionValue, getCellIsSelected, embeddingPointsVisible: true }), !disableTooltip && jsxRuntimeExports.jsx(ScatterplotTooltipSubscriber, { parentUuid: uuid2, obsHighlight: cellHighlight, width: width2, height: height2, getObsInfo })] });
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}, updateViewInfo: setComponentViewInfo, getExpressionValue, getCellIsSelected, embeddingPointsVisible: true }), !disableTooltip && jsxRuntimeExports.jsx(ScatterplotTooltipSubscriber, { parentUuid: uuid2, obsHighlight: cellHighlight, width: width2, height: height2, getObsInfo: getObsInfo2 })] });
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}
|
|
232354
232354
|
var DEFAULT_CONFIG = {
|
|
232355
232355
|
// minimum relative difference between two compared values,
|
|
@@ -251422,8 +251422,8 @@ function SpatialOptions(props) {
|
|
|
251422
251422
|
return `${labelPrefix} for spatial gene expression colormap range`;
|
|
251423
251423
|
}, id: `gene-expression-colormap-range-${spatialOptionsId}`, valueLabelDisplay: "auto", step: 5e-3, min: 0, max: 1 }) })] })] }) : null] });
|
|
251424
251424
|
}
|
|
251425
|
-
function SpatialTooltipSubscriber(props) {
|
|
251426
|
-
const { parentUuid, obsHighlight, width: width2, height: height2, getObsInfo, hoverData, hoverCoord, hoverMode, useHoverInfoForTooltip, getObsIdFromHoverData, featureType, featureLabelsMap } = props;
|
|
251425
|
+
function SpatialTooltipSubscriber$1(props) {
|
|
251426
|
+
const { parentUuid, obsHighlight, width: width2, height: height2, getObsInfo: getObsInfo2, hoverData, hoverCoord, hoverMode, useHoverInfoForTooltip, getObsIdFromHoverData, featureType, featureLabelsMap } = props;
|
|
251427
251427
|
const sourceUuid = useComponentHover();
|
|
251428
251428
|
const viewInfo = useComponentViewInfo(parentUuid);
|
|
251429
251429
|
let [cellInfo, x2, y2] = [null, null, null];
|
|
@@ -251431,7 +251431,7 @@ function SpatialTooltipSubscriber(props) {
|
|
|
251431
251431
|
const obsId = getObsIdFromHoverData(hoverData);
|
|
251432
251432
|
if (obsId) {
|
|
251433
251433
|
[cellInfo, x2, y2] = [
|
|
251434
|
-
|
|
251434
|
+
getObsInfo2(obsId, hoverMode),
|
|
251435
251435
|
...hoverCoord || [null, null]
|
|
251436
251436
|
];
|
|
251437
251437
|
}
|
|
@@ -251439,14 +251439,14 @@ function SpatialTooltipSubscriber(props) {
|
|
|
251439
251439
|
const obsId = getObsIdFromHoverData(hoverData);
|
|
251440
251440
|
if (obsId) {
|
|
251441
251441
|
[cellInfo, x2, y2] = [
|
|
251442
|
-
|
|
251442
|
+
getObsInfo2(obsId, hoverMode),
|
|
251443
251443
|
...hoverCoord || [null, null]
|
|
251444
251444
|
];
|
|
251445
251445
|
}
|
|
251446
|
-
} else if (!useHoverInfoForTooltip &&
|
|
251446
|
+
} else if (!useHoverInfoForTooltip && getObsInfo2 && obsHighlight) {
|
|
251447
251447
|
const obsId = obsHighlight;
|
|
251448
251448
|
[cellInfo, x2, y2] = [
|
|
251449
|
-
|
|
251449
|
+
getObsInfo2(obsId, hoverMode),
|
|
251450
251450
|
...viewInfo && viewInfo.projectFromId ? viewInfo.projectFromId(obsId) : [null, null]
|
|
251451
251451
|
];
|
|
251452
251452
|
}
|
|
@@ -251620,7 +251620,7 @@ function SpatialSubscriber$1(props) {
|
|
|
251620
251620
|
matrixObsIndex
|
|
251621
251621
|
]);
|
|
251622
251622
|
const cellSelection = useMemo$1(() => Array.from(cellColors.keys()), [cellColors]);
|
|
251623
|
-
const
|
|
251623
|
+
const getObsInfo2 = useGetObsInfo(observationsLabel, obsLabelsTypes, obsLabelsData, obsSetsMembership);
|
|
251624
251624
|
const getTooltipObsInfo = useCallback((tooltipObsId, tooltipObsType) => {
|
|
251625
251625
|
if (tooltipObsType === HOVER_MODE.MOLECULE_LAYER) {
|
|
251626
251626
|
return {
|
|
@@ -251628,8 +251628,8 @@ function SpatialSubscriber$1(props) {
|
|
|
251628
251628
|
"Molecule Name": obsLocationsLabels[tooltipObsId]
|
|
251629
251629
|
};
|
|
251630
251630
|
}
|
|
251631
|
-
return
|
|
251632
|
-
}, [
|
|
251631
|
+
return getObsInfo2(tooltipObsId);
|
|
251632
|
+
}, [getObsInfo2, obsLocationsLabels]);
|
|
251633
251633
|
const [hoverData, setHoverData] = useState(null);
|
|
251634
251634
|
const [hoverCoord, setHoverCoord] = useState(null);
|
|
251635
251635
|
const [hoverMode, setHoverMode] = useState(null);
|
|
@@ -251757,7 +251757,7 @@ function SpatialSubscriber$1(props) {
|
|
|
251757
251757
|
orbitAxis
|
|
251758
251758
|
}, setViewState, originalViewState, imageLayerDefs: imageLayers, obsSegmentationsLayerDefs: cellsLayer, obsLocationsLayerDefs: moleculesLayer, neighborhoodLayerDefs: neighborhoodsLayer, obsLocationsIndex, obsSegmentationsIndex, obsLocations, obsLocationsLabels, obsLocationsFeatureIndex, hasSegmentations: hasSegmentationsData, obsSegmentations, obsSegmentationsType, obsCentroids, obsCentroidsIndex, cellFilter, cellSelection, cellHighlight, cellColors, neighborhoods, imageLayerLoaders: resolutionFilteredImageLayerLoaders, setCellFilter, setCellSelection: setCellSelectionProp, setCellHighlight, setHoverInfo, setMoleculeHighlight, setComponentHover: () => {
|
|
251759
251759
|
setComponentHover(uuid2);
|
|
251760
|
-
}, updateViewInfo: setComponentViewInfo, imageLayerCallbacks, segmentationLayerCallbacks, spatialAxisFixed, geneExpressionColormap, geneExpressionColormapRange, expressionData: shiftedExpressionDataForBitmask, cellColorEncoding, getExpressionValue, theme, useFullResolutionImage, photometricInterpretation }), tooltipsVisible && jsxRuntimeExports.jsx(SpatialTooltipSubscriber, { parentUuid: uuid2, obsHighlight: cellHighlight || moleculeHighlight, width: width2, height: height2, getObsInfo: getTooltipObsInfo, useHoverInfoForTooltip, hoverData, hoverCoord, hoverMode, getObsIdFromHoverData, featureType, featureLabelsMap }), jsxRuntimeExports.jsx(Legend, {
|
|
251760
|
+
}, updateViewInfo: setComponentViewInfo, imageLayerCallbacks, segmentationLayerCallbacks, spatialAxisFixed, geneExpressionColormap, geneExpressionColormapRange, expressionData: shiftedExpressionDataForBitmask, cellColorEncoding, getExpressionValue, theme, useFullResolutionImage, photometricInterpretation }), tooltipsVisible && jsxRuntimeExports.jsx(SpatialTooltipSubscriber$1, { parentUuid: uuid2, obsHighlight: cellHighlight || moleculeHighlight, width: width2, height: height2, getObsInfo: getTooltipObsInfo, useHoverInfoForTooltip, hoverData, hoverCoord, hoverMode, getObsIdFromHoverData, featureType, featureLabelsMap }), jsxRuntimeExports.jsx(Legend, {
|
|
251761
251761
|
visible: true,
|
|
251762
251762
|
// Fix to dark theme due to black background of spatial plot.
|
|
251763
251763
|
theme: "dark",
|
|
@@ -253018,6 +253018,117 @@ class Spatial2 extends AbstractSpatialOrScatterplot {
|
|
|
253018
253018
|
}
|
|
253019
253019
|
}
|
|
253020
253020
|
const SpatialWrapper = forwardRef$1((props, deckRef) => jsxRuntimeExports.jsx(Spatial2, { ...props, deckRef }));
|
|
253021
|
+
function TooltipChild(props) {
|
|
253022
|
+
const { x: x2, y: y2, parentUuid, sourceUuid, width: width2, height: height2, info: info2, tooltipsVisible, tooltipCrosshairsVisible, featureType, featureLabelsMap } = props;
|
|
253023
|
+
const visible = parentUuid === sourceUuid ? tooltipsVisible : tooltipCrosshairsVisible;
|
|
253024
|
+
return visible ? jsxRuntimeExports.jsx(Tooltip2D, { x: x2, y: y2, parentUuid, sourceUuid, parentWidth: width2, parentHeight: height2, children: jsxRuntimeExports.jsx(TooltipContent, { info: info2, featureType, featureLabelsMap }) }) : null;
|
|
253025
|
+
}
|
|
253026
|
+
function getXY(obsHighlight, viewInfo, obsIndex, obsLocations, useHoverInfoForTooltip, projectedHoverCoord) {
|
|
253027
|
+
const hasObsCoordinates = useHoverInfoForTooltip ? true : obsIndex && obsLocations;
|
|
253028
|
+
if (!hasObsCoordinates)
|
|
253029
|
+
return null;
|
|
253030
|
+
const obsI = obsIndex?.indexOf(obsHighlight);
|
|
253031
|
+
if (obsI < 0)
|
|
253032
|
+
return null;
|
|
253033
|
+
if (useHoverInfoForTooltip) {
|
|
253034
|
+
return [projectedHoverCoord?.[0], projectedHoverCoord?.[1]];
|
|
253035
|
+
}
|
|
253036
|
+
const obsCoord = [obsLocations?.data[0][obsI] || 0, obsLocations?.data[1][obsI] || 0, 0];
|
|
253037
|
+
const projectedObsCoord = viewInfo?.project(obsCoord);
|
|
253038
|
+
return [projectedObsCoord?.[0], projectedObsCoord?.[1]];
|
|
253039
|
+
}
|
|
253040
|
+
function getObsInfo(obsSetsData, obsType, obsId) {
|
|
253041
|
+
let result = {
|
|
253042
|
+
[`${capitalize$3(obsType)} ID`]: obsId
|
|
253043
|
+
};
|
|
253044
|
+
if (obsSetsData?.obsSetsMembership) {
|
|
253045
|
+
const obsMembership = obsSetsData.obsSetsMembership.get(obsId) || [];
|
|
253046
|
+
if (obsMembership) {
|
|
253047
|
+
result = {
|
|
253048
|
+
...result,
|
|
253049
|
+
...Object.fromEntries(obsMembership.flatMap((path2) => path2.slice(1).map((pathEl, elLevel) => [
|
|
253050
|
+
`${path2[0]}${path2.length > 2 ? ` L${elLevel + 1}` : ""}`,
|
|
253051
|
+
pathEl
|
|
253052
|
+
])))
|
|
253053
|
+
};
|
|
253054
|
+
}
|
|
253055
|
+
}
|
|
253056
|
+
return result;
|
|
253057
|
+
}
|
|
253058
|
+
function SpatialTooltipSubscriber(props) {
|
|
253059
|
+
const {
|
|
253060
|
+
parentUuid,
|
|
253061
|
+
width: width2,
|
|
253062
|
+
height: height2,
|
|
253063
|
+
hoverCoord,
|
|
253064
|
+
featureType,
|
|
253065
|
+
featureLabelsMap,
|
|
253066
|
+
// Points
|
|
253067
|
+
obsPoints,
|
|
253068
|
+
pointLayerScopes,
|
|
253069
|
+
pointLayerCoordination,
|
|
253070
|
+
// Spots
|
|
253071
|
+
obsSpots,
|
|
253072
|
+
spotLayerScopes,
|
|
253073
|
+
spotLayerCoordination,
|
|
253074
|
+
// Segmentations
|
|
253075
|
+
obsSegmentationsLocations,
|
|
253076
|
+
segmentationLayerScopes,
|
|
253077
|
+
segmentationChannelScopesByLayer,
|
|
253078
|
+
segmentationChannelCoordination,
|
|
253079
|
+
obsSegmentationsSetsData,
|
|
253080
|
+
// Images
|
|
253081
|
+
imageLayerScopes,
|
|
253082
|
+
imageLayerCoordination
|
|
253083
|
+
} = props;
|
|
253084
|
+
const sourceUuid = useComponentHover();
|
|
253085
|
+
const viewInfo = useComponentViewInfo(parentUuid);
|
|
253086
|
+
const useHoverInfoForTooltip = sourceUuid === parentUuid && hoverCoord;
|
|
253087
|
+
const projectedHoverCoord = useHoverInfoForTooltip ? viewInfo?.project(hoverCoord) : null;
|
|
253088
|
+
let yOffset = -30;
|
|
253089
|
+
return jsxRuntimeExports.jsxs(jsxRuntimeExports.Fragment, { children: [projectedHoverCoord && imageLayerScopes?.map((layerScope) => {
|
|
253090
|
+
const { pixelHighlight, tooltipsVisible, spatialLayerVisible } = imageLayerCoordination?.[0]?.[layerScope] || {};
|
|
253091
|
+
return tooltipsVisible && pixelHighlight && spatialLayerVisible ? jsxRuntimeExports.jsx(TooltipChild, { parentUuid, sourceUuid, width: width2, height: height2, info: {
|
|
253092
|
+
"Pixel Value": JSON.stringify(pixelHighlight)
|
|
253093
|
+
}, x: projectedHoverCoord?.[0], y: projectedHoverCoord?.[1] + (yOffset += 30), featureType, featureLabelsMap }, layerScope) : null;
|
|
253094
|
+
}), segmentationLayerScopes?.flatMap((layerScope) => segmentationChannelScopesByLayer?.[layerScope]?.map((channelScope) => {
|
|
253095
|
+
const { obsType, obsHighlight, tooltipsVisible, tooltipCrosshairsVisible, spatialChannelVisible } = segmentationChannelCoordination?.[0]?.[layerScope]?.[channelScope] || {};
|
|
253096
|
+
const obsSetsData = obsSegmentationsSetsData?.[layerScope]?.[channelScope];
|
|
253097
|
+
const obsInfo = getObsInfo(obsSetsData, obsType, obsHighlight);
|
|
253098
|
+
if (!obsHighlight || !spatialChannelVisible || !tooltipsVisible && !tooltipCrosshairsVisible)
|
|
253099
|
+
return null;
|
|
253100
|
+
const { obsIndex, obsLocations } = obsSegmentationsLocations?.[layerScope]?.[channelScope] || {};
|
|
253101
|
+
const xy = getXY(obsHighlight, viewInfo, obsIndex, obsLocations, useHoverInfoForTooltip, projectedHoverCoord);
|
|
253102
|
+
if (!xy)
|
|
253103
|
+
return null;
|
|
253104
|
+
const [x2, y2] = xy;
|
|
253105
|
+
return jsxRuntimeExports.jsx(TooltipChild, { parentUuid, sourceUuid, tooltipsVisible, tooltipCrosshairsVisible, width: width2, height: height2, info: obsInfo, x: x2, y: y2 + (yOffset += 20 + 15 * Object.keys(obsInfo).length), featureType, featureLabelsMap }, `${layerScope}-${channelScope}`);
|
|
253106
|
+
})), spotLayerScopes?.map((layerScope) => {
|
|
253107
|
+
const { obsType, obsHighlight, tooltipsVisible, tooltipCrosshairsVisible, spatialLayerVisible } = spotLayerCoordination?.[0]?.[layerScope] || {};
|
|
253108
|
+
if (!obsHighlight || !spatialLayerVisible || !tooltipsVisible && !tooltipCrosshairsVisible)
|
|
253109
|
+
return null;
|
|
253110
|
+
const { obsIndex, obsSpots: obsLocations } = obsSpots?.[layerScope] || {};
|
|
253111
|
+
const xy = getXY(obsHighlight, viewInfo, obsIndex, obsLocations, useHoverInfoForTooltip, projectedHoverCoord);
|
|
253112
|
+
if (!xy)
|
|
253113
|
+
return null;
|
|
253114
|
+
const [x2, y2] = xy;
|
|
253115
|
+
return jsxRuntimeExports.jsx(TooltipChild, { parentUuid, sourceUuid, tooltipsVisible, tooltipCrosshairsVisible, width: width2, height: height2, info: {
|
|
253116
|
+
[`${capitalize$3(obsType)} ID`]: obsHighlight
|
|
253117
|
+
}, x: x2, y: y2 + (yOffset += 30), featureType, featureLabelsMap }, layerScope);
|
|
253118
|
+
}), pointLayerScopes?.map((layerScope) => {
|
|
253119
|
+
const { obsType, obsHighlight, tooltipsVisible, tooltipCrosshairsVisible, spatialLayerVisible } = pointLayerCoordination?.[0]?.[layerScope] || {};
|
|
253120
|
+
if (!obsHighlight || !spatialLayerVisible || !tooltipsVisible && !tooltipCrosshairsVisible)
|
|
253121
|
+
return null;
|
|
253122
|
+
const { obsIndex, obsPoints: obsLocations } = obsPoints?.[layerScope] || {};
|
|
253123
|
+
const xy = getXY(obsHighlight, viewInfo, obsIndex, obsLocations, useHoverInfoForTooltip, projectedHoverCoord);
|
|
253124
|
+
if (!xy)
|
|
253125
|
+
return null;
|
|
253126
|
+
const [x2, y2] = xy;
|
|
253127
|
+
return jsxRuntimeExports.jsx(TooltipChild, { parentUuid, sourceUuid, tooltipsVisible, tooltipCrosshairsVisible, width: width2, height: height2, info: {
|
|
253128
|
+
[`${capitalize$3(obsType)} ID`]: obsHighlight
|
|
253129
|
+
}, x: x2, y: y2 + (yOffset += 30), featureType, featureLabelsMap }, layerScope);
|
|
253130
|
+
})] });
|
|
253131
|
+
}
|
|
253021
253132
|
class ErrorBoundary extends React__default.Component {
|
|
253022
253133
|
constructor(props) {
|
|
253023
253134
|
super(props);
|
|
@@ -253036,12 +253147,12 @@ class ErrorBoundary extends React__default.Component {
|
|
|
253036
253147
|
}
|
|
253037
253148
|
}
|
|
253038
253149
|
const LazySpatialThree = React__default.lazy(async () => {
|
|
253039
|
-
const { SpatialWrapper: SpatialWrapper2 } = await import("./index-
|
|
253150
|
+
const { SpatialWrapper: SpatialWrapper2 } = await import("./index-S_FSh1nk.js");
|
|
253040
253151
|
return { default: SpatialWrapper2 };
|
|
253041
253152
|
});
|
|
253042
253153
|
const SpatialThreeAdapter = React__default.forwardRef((props, ref2) => jsxRuntimeExports.jsx("div", { ref: ref2, style: { width: "100%", height: "100%" }, children: jsxRuntimeExports.jsx(ErrorBoundary, { children: jsxRuntimeExports.jsx(Suspense, { fallback: jsxRuntimeExports.jsx("div", { children: "Loading..." }), children: jsxRuntimeExports.jsx(LazySpatialThree, { ...props }) }) }) }));
|
|
253043
253154
|
const LazySpatialAccelerated = React__default.lazy(async () => {
|
|
253044
|
-
const { SpatialWrapper: SpatialWrapper2 } = await import("./index-
|
|
253155
|
+
const { SpatialWrapper: SpatialWrapper2 } = await import("./index-BAP2AnIF.js");
|
|
253045
253156
|
return { default: SpatialWrapper2 };
|
|
253046
253157
|
});
|
|
253047
253158
|
const SpatialAcceleratedAdapter = React__default.forwardRef((props, ref2) => jsxRuntimeExports.jsx("div", { ref: ref2, style: { width: "100%", height: "100%" }, children: jsxRuntimeExports.jsx(ErrorBoundary, { children: jsxRuntimeExports.jsx(Suspense, { fallback: jsxRuntimeExports.jsx("div", { children: "Loading..." }), children: jsxRuntimeExports.jsx(LazySpatialAccelerated, { ...props }) }) }) }));
|
|
@@ -253530,7 +253641,29 @@ function SpatialSubscriber(props) {
|
|
|
253530
253641
|
target: [targetX2, targetY2, targetZ],
|
|
253531
253642
|
rotationX,
|
|
253532
253643
|
rotationOrbit
|
|
253533
|
-
} : DEFAULT_VIEW_STATE, orbitAxis, spatialAxisFixed, setViewState: isValidViewState ? setViewState : SET_VIEW_STATE_NOOP, originalViewState, spatialRenderingMode, updateViewInfo: setComponentViewInfo, delegateHover, obsPoints: obsPointsData, pointLayerScopes, pointLayerCoordination, pointMultiObsLabels: pointMultiObsLabelsData, obsSpots: obsSpotsData, spotLayerScopes, spotLayerCoordination, obsSpotsSets: obsSpotsSetsData, spotMatrixIndices: spotMultiIndicesData, spotMultiExpressionData: spotMultiExpressionNormData, segmentationLayerScopes, segmentationLayerCoordination, segmentationChannelScopesByLayer, segmentationChannelCoordination, obsSegmentations: obsSegmentationsData, obsSegmentationsLocations: obsSegmentationsLocationsData, obsSegmentationsSets: obsSegmentationsSetsData, segmentationMatrixIndices: segmentationMultiIndicesData, segmentationMultiExpressionData: segmentationMultiExpressionNormData, bitmaskValueIsIndex, images: imageData, imageLayerScopes, imageLayerCoordination, imageChannelScopesByLayer, imageChannelCoordination }), jsxRuntimeExports.jsx(
|
|
253644
|
+
} : DEFAULT_VIEW_STATE, orbitAxis, spatialAxisFixed, setViewState: isValidViewState ? setViewState : SET_VIEW_STATE_NOOP, originalViewState, spatialRenderingMode, updateViewInfo: setComponentViewInfo, delegateHover, obsPoints: obsPointsData, pointLayerScopes, pointLayerCoordination, pointMultiObsLabels: pointMultiObsLabelsData, obsSpots: obsSpotsData, spotLayerScopes, spotLayerCoordination, obsSpotsSets: obsSpotsSetsData, spotMatrixIndices: spotMultiIndicesData, spotMultiExpressionData: spotMultiExpressionNormData, segmentationLayerScopes, segmentationLayerCoordination, segmentationChannelScopesByLayer, segmentationChannelCoordination, obsSegmentations: obsSegmentationsData, obsSegmentationsLocations: obsSegmentationsLocationsData, obsSegmentationsSets: obsSegmentationsSetsData, segmentationMatrixIndices: segmentationMultiIndicesData, segmentationMultiExpressionData: segmentationMultiExpressionNormData, bitmaskValueIsIndex, images: imageData, imageLayerScopes, imageLayerCoordination, imageChannelScopesByLayer, imageChannelCoordination }), !disableTooltip && jsxRuntimeExports.jsx(SpatialTooltipSubscriber, {
|
|
253645
|
+
parentUuid: uuid2,
|
|
253646
|
+
width: width2,
|
|
253647
|
+
height: height2,
|
|
253648
|
+
hoverCoord,
|
|
253649
|
+
// Points
|
|
253650
|
+
obsPoints: obsPointsData,
|
|
253651
|
+
pointLayerScopes,
|
|
253652
|
+
pointLayerCoordination,
|
|
253653
|
+
// Spots
|
|
253654
|
+
obsSpots: obsSpotsData,
|
|
253655
|
+
spotLayerScopes,
|
|
253656
|
+
spotLayerCoordination,
|
|
253657
|
+
// Segmentations
|
|
253658
|
+
obsSegmentationsLocations: obsSegmentationsLocationsData,
|
|
253659
|
+
segmentationLayerScopes,
|
|
253660
|
+
segmentationChannelScopesByLayer,
|
|
253661
|
+
segmentationChannelCoordination,
|
|
253662
|
+
obsSegmentationsSetsData,
|
|
253663
|
+
// Images
|
|
253664
|
+
imageLayerScopes,
|
|
253665
|
+
imageLayerCoordination
|
|
253666
|
+
}), jsxRuntimeExports.jsx(
|
|
253534
253667
|
MultiLegend,
|
|
253535
253668
|
{
|
|
253536
253669
|
// Fix to dark theme due to black background of spatial plot.
|
|
@@ -254365,11 +254498,11 @@ const Heatmap$1 = forwardRef$1((props, deckRef) => {
|
|
|
254365
254498
|
});
|
|
254366
254499
|
Heatmap$1.displayName = "Heatmap";
|
|
254367
254500
|
function HeatmapTooltipSubscriber(props) {
|
|
254368
|
-
const { parentUuid, width: width2, height: height2, transpose: transpose2, getObsInfo, getFeatureInfo, obsHighlight, featureHighlight, featureType, featureLabelsMap } = props;
|
|
254501
|
+
const { parentUuid, width: width2, height: height2, transpose: transpose2, getObsInfo: getObsInfo2, getFeatureInfo, obsHighlight, featureHighlight, featureType, featureLabelsMap } = props;
|
|
254369
254502
|
const sourceUuid = useComponentHover();
|
|
254370
254503
|
const viewInfo = useComponentViewInfo(parentUuid);
|
|
254371
|
-
const [cellInfo, cellCoord] = obsHighlight &&
|
|
254372
|
-
|
|
254504
|
+
const [cellInfo, cellCoord] = obsHighlight && getObsInfo2 ? [
|
|
254505
|
+
getObsInfo2(obsHighlight),
|
|
254373
254506
|
viewInfo && viewInfo.projectFromId ? viewInfo.projectFromId(obsHighlight, null)[transpose2 ? 0 : 1] : null
|
|
254374
254507
|
] : [null, null];
|
|
254375
254508
|
const [geneInfo, geneCoord] = featureHighlight && getFeatureInfo ? [
|
|
@@ -254477,7 +254610,7 @@ function HeatmapSubscriber(props) {
|
|
|
254477
254610
|
cellSetSelection,
|
|
254478
254611
|
obsIndex
|
|
254479
254612
|
]);
|
|
254480
|
-
const
|
|
254613
|
+
const getObsInfo2 = useGetObsInfo(observationsLabel, obsLabelsTypes, obsLabelsData, obsSetsMembership);
|
|
254481
254614
|
const getObsMembership = useGetObsMembership(obsSetsMembership);
|
|
254482
254615
|
const getFeatureInfo = useCallback((featureId2) => {
|
|
254483
254616
|
if (featureId2) {
|
|
@@ -254517,7 +254650,7 @@ function HeatmapSubscriber(props) {
|
|
|
254517
254650
|
setTargetY(target2[1]);
|
|
254518
254651
|
}, colormapRange: geneExpressionColormapRange, setColormapRange: setGeneExpressionColormapRange, height: height2, width: width2, theme, uuid: uuid2, uint8ObsFeatureMatrix: uint8ObsFeatureMatrix?.data, cellColors, colormap: geneExpressionColormap, setIsRendering, setCellHighlight, setGeneHighlight, featureLabelsMap, obsIndex, featureIndex, setTrackHighlight, setComponentHover: () => {
|
|
254519
254652
|
setComponentHover(uuid2);
|
|
254520
|
-
}, updateViewInfo: setComponentViewInfo, observationsTitle, variablesTitle, variablesDashes: false, observationsDashes: false, cellColorLabels, useDevicePixels: true, onHeatmapClick, setColorEncoding: setHoveredColorEncoding }), tooltipsVisible && jsxRuntimeExports.jsx(HeatmapTooltipSubscriber, { parentUuid: uuid2, width: width2, height: height2, transpose: transpose2, getObsInfo, getFeatureInfo, obsHighlight: cellHighlight, featureHighlight: geneHighlight, featureType, featureLabelsMap }), jsxRuntimeExports.jsx(Legend, { visible: true, theme, featureType, featureValueType, obsColorEncoding: "geneExpression", considerSelections: false, featureSelection: geneSelection, obsSetSelection: cellSetSelection, featureValueColormap: geneExpressionColormap, featureValueColormapRange: geneExpressionColormapRange, extent: obsFeatureMatrixExtent })] });
|
|
254653
|
+
}, updateViewInfo: setComponentViewInfo, observationsTitle, variablesTitle, variablesDashes: false, observationsDashes: false, cellColorLabels, useDevicePixels: true, onHeatmapClick, setColorEncoding: setHoveredColorEncoding }), tooltipsVisible && jsxRuntimeExports.jsx(HeatmapTooltipSubscriber, { parentUuid: uuid2, width: width2, height: height2, transpose: transpose2, getObsInfo: getObsInfo2, getFeatureInfo, obsHighlight: cellHighlight, featureHighlight: geneHighlight, featureType, featureLabelsMap }), jsxRuntimeExports.jsx(Legend, { visible: true, theme, featureType, featureValueType, obsColorEncoding: "geneExpression", considerSelections: false, featureSelection: geneSelection, obsSetSelection: cellSetSelection, featureValueColormap: geneExpressionColormap, featureValueColormapRange: geneExpressionColormapRange, extent: obsFeatureMatrixExtent })] });
|
|
254521
254654
|
}
|
|
254522
254655
|
function _classCallCheck(a2, n3) {
|
|
254523
254656
|
if (!(a2 instanceof n3)) throw new TypeError("Cannot call a class as a function");
|
|
@@ -266159,7 +266292,7 @@ function HiglassGlobalStyles(props) {
|
|
|
266159
266292
|
}
|
|
266160
266293
|
register({ dataFetcher: ZarrMultivecDataFetcher_default, config: ZarrMultivecDataFetcher_default.config }, { pluginType: "dataFetcher" });
|
|
266161
266294
|
const LazyHiGlassComponent = React__default.lazy(async () => {
|
|
266162
|
-
const { HiGlassComponent } = await import("./higlass-
|
|
266295
|
+
const { HiGlassComponent } = await import("./higlass-n5FnMrCn.js");
|
|
266163
266296
|
return { default: HiGlassComponent };
|
|
266164
266297
|
});
|
|
266165
266298
|
const HG_SIZE = 800;
|
|
@@ -269106,7 +269239,7 @@ function NeuroglancerGlobalStyles(props) {
|
|
|
269106
269239
|
const { classes: classes2 } = props;
|
|
269107
269240
|
return jsxRuntimeExports.jsxs(jsxRuntimeExports.Fragment, { children: [jsxRuntimeExports.jsx(GlobalStyles$3, { styles: globalNeuroglancerCss }), jsxRuntimeExports.jsx(ScopedGlobalStyles, { styles: globalNeuroglancerStyles, parentClassName: classes2.neuroglancerWrapper })] });
|
|
269108
269241
|
}
|
|
269109
|
-
const LazyReactNeuroglancer = React__default.lazy(() => import("./ReactNeuroglancer-
|
|
269242
|
+
const LazyReactNeuroglancer = React__default.lazy(() => import("./ReactNeuroglancer-Cd-eoVyU.js"));
|
|
269110
269243
|
function createWorker() {
|
|
269111
269244
|
return new WorkerFactory();
|
|
269112
269245
|
}
|
|
@@ -373108,6 +373241,36 @@ function getDataView(source2) {
|
|
|
373108
373241
|
}
|
|
373109
373242
|
return null;
|
|
373110
373243
|
}
|
|
373244
|
+
function toFloat32Array(input) {
|
|
373245
|
+
if (input instanceof Float32Array) {
|
|
373246
|
+
return input;
|
|
373247
|
+
}
|
|
373248
|
+
if (input instanceof BigInt64Array) {
|
|
373249
|
+
const floats = new Float32Array(input.length);
|
|
373250
|
+
for (let i2 = 0; i2 < input.length; i2++) {
|
|
373251
|
+
floats[i2] = Number(input[i2]);
|
|
373252
|
+
}
|
|
373253
|
+
return floats;
|
|
373254
|
+
}
|
|
373255
|
+
if (input instanceof Float64Array) {
|
|
373256
|
+
return new Float32Array(input);
|
|
373257
|
+
}
|
|
373258
|
+
if (input instanceof Array) {
|
|
373259
|
+
return new Float32Array(input);
|
|
373260
|
+
}
|
|
373261
|
+
log$b.warn("toFloat32Array expected Float32Array, Float64Array, BigInt64Array, or Array input");
|
|
373262
|
+
return new Float32Array(input);
|
|
373263
|
+
}
|
|
373264
|
+
function downcastIfBigIntArray(input) {
|
|
373265
|
+
if (input instanceof BigInt64Array) {
|
|
373266
|
+
const downcasted = new Int32Array(input.length);
|
|
373267
|
+
for (let i2 = 0; i2 < input.length; i2++) {
|
|
373268
|
+
downcasted[i2] = Number(input[i2]);
|
|
373269
|
+
}
|
|
373270
|
+
return downcasted;
|
|
373271
|
+
}
|
|
373272
|
+
return input;
|
|
373273
|
+
}
|
|
373111
373274
|
const shapesElementRegex = /^shapes\/([^/]*)$/;
|
|
373112
373275
|
const shapesSubElementRegex = /^shapes\/([^/]*)\/(.*)$/;
|
|
373113
373276
|
function getShapesElementPath(arrPath) {
|
|
@@ -373133,26 +373296,6 @@ function getParquetPath$1(arrPath) {
|
|
|
373133
373296
|
}
|
|
373134
373297
|
throw new Error(`Cannot determine parquet path for shapes array path: ${arrPath}`);
|
|
373135
373298
|
}
|
|
373136
|
-
function toFloat32Array(input) {
|
|
373137
|
-
if (input instanceof Float32Array) {
|
|
373138
|
-
return input;
|
|
373139
|
-
}
|
|
373140
|
-
if (input instanceof BigInt64Array) {
|
|
373141
|
-
const floats = new Float32Array(input.length);
|
|
373142
|
-
for (let i2 = 0; i2 < input.length; i2++) {
|
|
373143
|
-
floats[i2] = Number(input[i2]);
|
|
373144
|
-
}
|
|
373145
|
-
return floats;
|
|
373146
|
-
}
|
|
373147
|
-
if (input instanceof Float64Array) {
|
|
373148
|
-
return new Float32Array(input);
|
|
373149
|
-
}
|
|
373150
|
-
if (input instanceof Array) {
|
|
373151
|
-
return new Float32Array(input);
|
|
373152
|
-
}
|
|
373153
|
-
log$b.warn("toFloat32Array expected Float32Array, Float64Array, BigInt64Array, or Array input");
|
|
373154
|
-
return new Float32Array(input);
|
|
373155
|
-
}
|
|
373156
373299
|
class SpatialDataShapesSource extends SpatialDataTableSource {
|
|
373157
373300
|
/**
|
|
373158
373301
|
*
|
|
@@ -373240,11 +373383,17 @@ class SpatialDataShapesSource extends SpatialDataTableSource {
|
|
|
373240
373383
|
_decodeWkbColumnFlat(geometryColumn) {
|
|
373241
373384
|
const wkb = new WKB();
|
|
373242
373385
|
const arr = geometryColumn.toArray();
|
|
373243
|
-
return arr.map((geom) =>
|
|
373244
|
-
|
|
373245
|
-
|
|
373246
|
-
|
|
373247
|
-
|
|
373386
|
+
return arr.map((geom) => {
|
|
373387
|
+
const coords = (
|
|
373388
|
+
/** @type {any} */
|
|
373389
|
+
wkb.readGeometry(geom).getFlatCoordinates()
|
|
373390
|
+
);
|
|
373391
|
+
const downcastedCoords = (
|
|
373392
|
+
/** @type {[number, number]} */
|
|
373393
|
+
coords.map((coord) => Number(coord))
|
|
373394
|
+
);
|
|
373395
|
+
return downcastedCoords;
|
|
373396
|
+
});
|
|
373248
373397
|
}
|
|
373249
373398
|
/**
|
|
373250
373399
|
* Helper to decode WKB geometry column as nested coordinates (for polygons).
|
|
@@ -373261,7 +373410,12 @@ class SpatialDataShapesSource extends SpatialDataTableSource {
|
|
|
373261
373410
|
/** @type {any} */
|
|
373262
373411
|
wkb.readGeometry(geom).getCoordinates()
|
|
373263
373412
|
);
|
|
373264
|
-
|
|
373413
|
+
const firstPolygon = coords[0];
|
|
373414
|
+
for (let i2 = 0; i2 < firstPolygon.length; i2++) {
|
|
373415
|
+
firstPolygon[i2] = /** @type {[number, number]} */
|
|
373416
|
+
firstPolygon[i2].map((coord) => Number(coord));
|
|
373417
|
+
}
|
|
373418
|
+
return firstPolygon;
|
|
373265
373419
|
});
|
|
373266
373420
|
}
|
|
373267
373421
|
/**
|
|
@@ -373421,7 +373575,7 @@ class SpatialDataPointsSource extends SpatialDataTableSource {
|
|
|
373421
373575
|
if (!column2) {
|
|
373422
373576
|
throw new Error(`Column "${name2}" not found in the arrow table.`);
|
|
373423
373577
|
}
|
|
373424
|
-
return column2.toArray();
|
|
373578
|
+
return downcastIfBigIntArray(column2.toArray());
|
|
373425
373579
|
});
|
|
373426
373580
|
return {
|
|
373427
373581
|
shape: [axisColumnArrs.length, arrowTable.numRows],
|
package/dist/index.js
CHANGED
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import { bQ, bO, bM, bP, bN, bL, bR } from "./index-
|
|
1
|
+
import { bQ, bO, bM, bP, bN, bL, bR } from "./index-TF8hfyKX.js";
|
|
2
2
|
import { useComplexCoordination, useComplexCoordinationSecondary, useCoordination, useCoordinationScopes, useCoordinationScopesBy, useGridItemSize, useMultiCoordinationScopesNonNull, useMultiCoordinationScopesSecondaryNonNull, usePageModeView } from "@vitessce/vit-s";
|
|
3
3
|
export {
|
|
4
4
|
bQ as PluginAsyncFunction,
|
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
import { i as inflate_1 } from "./pako.esm-SxljTded.js";
|
|
2
|
-
import { aF as getDefaultExportFromCjs, aW as BaseDecoder, aX as LercParameters, aY as LercAddCompression } from "./index-
|
|
2
|
+
import { aF as getDefaultExportFromCjs, aW as BaseDecoder, aX as LercParameters, aY as LercAddCompression } from "./index-TF8hfyKX.js";
|
|
3
3
|
var LercDecode = { exports: {} };
|
|
4
4
|
var hasRequiredLercDecode;
|
|
5
5
|
function requireLercDecode() {
|
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import { bG as MeshDistanceMaterial, bH as MeshDepthMaterial, bI as RGBADepthPacking, ae as UniformsUtils, bJ as ShaderChunk, a9 as InstancedBufferGeometry, a8 as Sphere, a7 as Box3, am as BackSide, u as DoubleSide, z as Mesh, a5 as FrontSide, v as MeshBasicMaterial, C as Color, e as Vector3, M as Matrix4, V as Vector2, ap as Matrix3, ag as Vector4, a1 as Texture, l as LinearFilter, aD as PlaneGeometry, x as BufferGeometry, aa as Float32BufferAttribute, bK as InstancedBufferAttribute } from "./index-
|
|
1
|
+
import { bG as MeshDistanceMaterial, bH as MeshDepthMaterial, bI as RGBADepthPacking, ae as UniformsUtils, bJ as ShaderChunk, a9 as InstancedBufferGeometry, a8 as Sphere, a7 as Box3, am as BackSide, u as DoubleSide, z as Mesh, a5 as FrontSide, v as MeshBasicMaterial, C as Color, e as Vector3, M as Matrix4, V as Vector2, ap as Matrix3, ag as Vector4, a1 as Texture, l as LinearFilter, aD as PlaneGeometry, x as BufferGeometry, aa as Float32BufferAttribute, bK as InstancedBufferAttribute } from "./index-TF8hfyKX.js";
|
|
2
2
|
function workerBootstrap() {
|
|
3
3
|
var modules = /* @__PURE__ */ Object.create(null);
|
|
4
4
|
function registerModule(ref, callback) {
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@vitessce/all",
|
|
3
|
-
"version": "3.8.
|
|
3
|
+
"version": "3.8.7",
|
|
4
4
|
"author": "HIDIVE Lab at HMS",
|
|
5
5
|
"homepage": "http://vitessce.io",
|
|
6
6
|
"repository": {
|
|
@@ -17,38 +17,38 @@
|
|
|
17
17
|
],
|
|
18
18
|
"dependencies": {
|
|
19
19
|
"zod": "^3.21.4",
|
|
20
|
-
"@vitessce/styles": "3.8.
|
|
21
|
-
"@vitessce/constants-internal": "3.8.
|
|
22
|
-
"@vitessce/abstract": "3.8.
|
|
23
|
-
"@vitessce/error": "3.8.
|
|
24
|
-
"@vitessce/csv": "3.8.
|
|
25
|
-
"@vitessce/description": "3.8.
|
|
26
|
-
"@vitessce/feature-list": "3.8.
|
|
27
|
-
"@vitessce/genomic-profiles": "3.8.
|
|
28
|
-
"@vitessce/heatmap": "3.8.
|
|
29
|
-
"@vitessce/glb": "3.8.
|
|
30
|
-
"@vitessce/json": "3.8.
|
|
31
|
-
"@vitessce/layer-controller": "3.8.
|
|
32
|
-
"@vitessce/layer-controller-beta": "3.8.
|
|
33
|
-
"@vitessce/link-controller": "3.8.
|
|
34
|
-
"@vitessce/obs-sets-manager": "3.8.
|
|
35
|
-
"@vitessce/ome-tiff": "3.8.
|
|
36
|
-
"@vitessce/plugins": "3.8.
|
|
37
|
-
"@vitessce/scatterplot-embedding": "3.8.
|
|
38
|
-
"@vitessce/scatterplot-gating": "3.8.
|
|
39
|
-
"@vitessce/schemas": "3.8.
|
|
40
|
-
"@vitessce/spatial": "3.8.
|
|
41
|
-
"@vitessce/spatial-beta": "3.8.
|
|
42
|
-
"@vitessce/statistical-plots": "3.8.
|
|
43
|
-
"@vitessce/status": "3.8.
|
|
44
|
-
"@vitessce/vit-s": "3.8.
|
|
45
|
-
"@vitessce/zarr": "3.8.
|
|
46
|
-
"@vitessce/globals": "3.8.
|
|
47
|
-
"@vitessce/spatial-zarr": "3.8.
|
|
48
|
-
"@vitessce/spatial-three": "3.8.
|
|
49
|
-
"@vitessce/spatial-accelerated": "3.8.
|
|
50
|
-
"@vitessce/biomarker-select": "3.8.
|
|
51
|
-
"@vitessce/neuroglancer": "3.8.
|
|
20
|
+
"@vitessce/styles": "3.8.7",
|
|
21
|
+
"@vitessce/constants-internal": "3.8.7",
|
|
22
|
+
"@vitessce/abstract": "3.8.7",
|
|
23
|
+
"@vitessce/error": "3.8.7",
|
|
24
|
+
"@vitessce/csv": "3.8.7",
|
|
25
|
+
"@vitessce/description": "3.8.7",
|
|
26
|
+
"@vitessce/feature-list": "3.8.7",
|
|
27
|
+
"@vitessce/genomic-profiles": "3.8.7",
|
|
28
|
+
"@vitessce/heatmap": "3.8.7",
|
|
29
|
+
"@vitessce/glb": "3.8.7",
|
|
30
|
+
"@vitessce/json": "3.8.7",
|
|
31
|
+
"@vitessce/layer-controller": "3.8.7",
|
|
32
|
+
"@vitessce/layer-controller-beta": "3.8.7",
|
|
33
|
+
"@vitessce/link-controller": "3.8.7",
|
|
34
|
+
"@vitessce/obs-sets-manager": "3.8.7",
|
|
35
|
+
"@vitessce/ome-tiff": "3.8.7",
|
|
36
|
+
"@vitessce/plugins": "3.8.7",
|
|
37
|
+
"@vitessce/scatterplot-embedding": "3.8.7",
|
|
38
|
+
"@vitessce/scatterplot-gating": "3.8.7",
|
|
39
|
+
"@vitessce/schemas": "3.8.7",
|
|
40
|
+
"@vitessce/spatial": "3.8.7",
|
|
41
|
+
"@vitessce/spatial-beta": "3.8.7",
|
|
42
|
+
"@vitessce/statistical-plots": "3.8.7",
|
|
43
|
+
"@vitessce/status": "3.8.7",
|
|
44
|
+
"@vitessce/vit-s": "3.8.7",
|
|
45
|
+
"@vitessce/zarr": "3.8.7",
|
|
46
|
+
"@vitessce/globals": "3.8.7",
|
|
47
|
+
"@vitessce/spatial-zarr": "3.8.7",
|
|
48
|
+
"@vitessce/spatial-three": "3.8.7",
|
|
49
|
+
"@vitessce/spatial-accelerated": "3.8.7",
|
|
50
|
+
"@vitessce/biomarker-select": "3.8.7",
|
|
51
|
+
"@vitessce/neuroglancer": "3.8.7"
|
|
52
52
|
},
|
|
53
53
|
"devDependencies": {
|
|
54
54
|
"@types/react": "^18.0.28",
|