@vitessce/all 3.8.2 → 3.8.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -1,4 +1,4 @@
1
- import { aF as getDefaultExportFromCjs, aG as Raycaster, W as OrthographicCamera, K as PerspectiveCamera, av as Scene, aH as PCFSoftShadowMap, aI as VSMShadowMap, aJ as PCFShadowMap, aK as BasicShadowMap, aL as NoToneMapping, aM as ACESFilmicToneMapping, e as Vector3, V as Vector2, aN as Clock, aO as WebGLRenderer, aP as Camera, x as BufferGeometry, r as Material, aQ as Layers, a1 as Texture, aC as RGBAFormat, ay as UnsignedByteType, C as Color, aj as _extends, aR as THREE, aS as EventDispatcher, aT as MOUSE, aU as TOUCH, aV as Spherical, Q as Quaternion, an as Ray, ak as Plane } from "./index-BNUI-w49.js";
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+ import { aF as getDefaultExportFromCjs, aG as Raycaster, W as OrthographicCamera, K as PerspectiveCamera, av as Scene, aH as PCFSoftShadowMap, aI as VSMShadowMap, aJ as PCFShadowMap, aK as BasicShadowMap, aL as NoToneMapping, aM as ACESFilmicToneMapping, e as Vector3, V as Vector2, aN as Clock, aO as WebGLRenderer, aP as Camera, x as BufferGeometry, r as Material, aQ as Layers, a1 as Texture, aC as RGBAFormat, ay as UnsignedByteType, C as Color, aj as _extends, aR as THREE, aS as EventDispatcher, aT as MOUSE, aU as TOUCH, aV as Spherical, Q as Quaternion, an as Ray, ak as Plane } from "./index-se6p8sp4.js";
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  import * as React from "react";
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  import React__default, { useReducer, useRef, useEffect, useLayoutEffect, useDebugValue, useState, useMemo } from "react";
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  var constants = { exports: {} };
@@ -1,4 +1,4 @@
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- import { aF as getDefaultExportFromCjs, b0 as requireAssign, b1 as require_export, b2 as require_core, b3 as require_fails, b4 as require_toObject, b5 as require_objectKeys, b6 as require_cof, b7 as require_wks, b8 as require_iterators, b9 as requireWeb_dom_iterable, ba as requireEs6_string_iterator, bb as require_anObject, bc as require_hide, bd as require_ctx, be as require_toLength, bf as require_global, bg as require_objectDp, bh as require_descriptors, bi as require_isObject, bj as require_objectCreate, bk as require_iterDefine, bl as require_iterStep, bm as require_meta, bn as require_isArray, bo as require_iobject, bp as require_setToStringTag, bq as require_aFunction, br as requireIterator, bs as require_propertyDesc, aZ as commonjsGlobal, bt as requireEs6_symbol, bu as requireDefineProperty, bv as require_toIobject, bw as require_objectGopd, bx as require_html, by as require_domCreate, bz as require_library, bA as requireSymbol, bB as require_objectPie, bC as require_has, bD as require_redefine, bE as require_objectAssign, bF as diffCameraState, ao as jsxRuntimeExports } from "./index-BNUI-w49.js";
1
+ import { aF as getDefaultExportFromCjs, b0 as requireAssign, b1 as require_export, b2 as require_core, b3 as require_fails, b4 as require_toObject, b5 as require_objectKeys, b6 as require_cof, b7 as require_wks, b8 as require_iterators, b9 as requireWeb_dom_iterable, ba as requireEs6_string_iterator, bb as require_anObject, bc as require_hide, bd as require_ctx, be as require_toLength, bf as require_global, bg as require_objectDp, bh as require_descriptors, bi as require_isObject, bj as require_objectCreate, bk as require_iterDefine, bl as require_iterStep, bm as require_meta, bn as require_isArray, bo as require_iobject, bp as require_setToStringTag, bq as require_aFunction, br as requireIterator, bs as require_propertyDesc, aZ as commonjsGlobal, bt as requireEs6_symbol, bu as requireDefineProperty, bv as require_toIobject, bw as require_objectGopd, bx as require_html, by as require_domCreate, bz as require_library, bA as requireSymbol, bB as require_objectPie, bC as require_has, bD as require_redefine, bE as require_objectAssign, bF as diffCameraState, ao as jsxRuntimeExports } from "./index-se6p8sp4.js";
2
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  import React__default from "react";
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  var assignExports = requireAssign();
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  const _Object$assign = /* @__PURE__ */ getDefaultExportFromCjs(assignExports);
@@ -1,5 +1,5 @@
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  import { i as inflate_1 } from "./pako.esm-SxljTded.js";
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- import { aW as BaseDecoder } from "./index-BNUI-w49.js";
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+ import { aW as BaseDecoder } from "./index-se6p8sp4.js";
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  class DeflateDecoder extends BaseDecoder {
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  decodeBlock(buffer) {
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  return inflate_1(new Uint8Array(buffer)).buffer;
@@ -1,7 +1,7 @@
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  import * as React$7 from "react";
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  import React__default, { isValidElement, PureComponent, Component, createElement, createContext, createRef } from "react";
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  import ReactDOM__default, { findDOMNode as findDOMNode$1 } from "react-dom";
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- import { aZ as commonjsGlobal$1, a_ as requireObjectAssign, aF as getDefaultExportFromCjs$1, a$ as earcut } from "./index-BNUI-w49.js";
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+ import { aZ as commonjsGlobal$1, a_ as requireObjectAssign, aF as getDefaultExportFromCjs$1, a$ as earcut } from "./index-se6p8sp4.js";
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  var promise = {};
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  var hasRequiredPromise;
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  function requirePromise() {
@@ -1,6 +1,6 @@
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- import { aw as log, ax as isEqual, ar as Data3DTexture, as as RedFormat, ay as UnsignedByteType, l as LinearFilter, az as RedIntegerFormat, aA as UnsignedIntType, m as NearestFilter, e as Vector3, V as Vector2, ag as Vector4, ae as UniformsUtils, aq as CoordinationType, aB as WebGLMultipleRenderTargets, aC as RGBAFormat, av as Scene, W as OrthographicCamera, ad as ShaderMaterial, z as Mesh, aD as PlaneGeometry, ao as jsxRuntimeExports, aE as GLSL3, am as BackSide } from "./index-BNUI-w49.js";
1
+ import { aw as log, ax as isEqual, ar as Data3DTexture, as as RedFormat, ay as UnsignedByteType, l as LinearFilter, az as RedIntegerFormat, aA as UnsignedIntType, m as NearestFilter, e as Vector3, V as Vector2, ag as Vector4, ae as UniformsUtils, aq as CoordinationType, aB as WebGLMultipleRenderTargets, aC as RGBAFormat, av as Scene, W as OrthographicCamera, ad as ShaderMaterial, z as Mesh, aD as PlaneGeometry, ao as jsxRuntimeExports, aE as GLSL3, am as BackSide } from "./index-se6p8sp4.js";
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  import { useRef, useState, useMemo, useEffect, useCallback } from "react";
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- import { u as useThree, a as useFrame, O as OrbitControls, C as Canvas } from "./OrbitControls-CeIrm0B5.js";
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+ import { u as useThree, a as useFrame, O as OrbitControls, C as Canvas } from "./OrbitControls-CYynRaKW.js";
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  const LogLevel = {
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  INFO: "info",
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  WARN: "warn",
@@ -1,7 +1,7 @@
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- import { G as Group, M as Matrix4, T as TrianglesDrawMode, a as TriangleFanDrawMode, b as TriangleStripDrawMode, R as REVISION, L as Loader, c as LoaderUtils, F as FileLoader, d as MeshPhysicalMaterial, V as Vector2, C as Color, S as SpotLight, P as PointLight, D as DirectionalLight, e as Vector3, I as InstancedMesh, Q as Quaternion, O as Object3D, f as TextureLoader, g as ImageBitmapLoader, B as BufferAttribute, h as InterleavedBuffer, i as LinearMipmapLinearFilter, N as NearestMipmapLinearFilter, j as LinearMipmapNearestFilter, k as NearestMipmapNearestFilter, l as LinearFilter, m as NearestFilter, n as RepeatWrapping, o as MirroredRepeatWrapping, p as ClampToEdgeWrapping, q as PointsMaterial, r as Material, s as LineBasicMaterial, t as MeshStandardMaterial, u as DoubleSide, v as MeshBasicMaterial, w as PropertyBinding, x as BufferGeometry, y as SkinnedMesh, z as Mesh, A as LineSegments, E as Line$1, H as LineLoop, J as Points, K as PerspectiveCamera, U as MathUtils, W as OrthographicCamera, X as Skeleton, Y as InterpolateDiscrete, Z as InterpolateLinear, _ as AnimationClip, $ as Bone, a0 as InterleavedBufferAttribute, a1 as Texture, a2 as VectorKeyframeTrack, a3 as QuaternionKeyframeTrack, a4 as NumberKeyframeTrack, a5 as FrontSide, a6 as Interpolant, a7 as Box3, a8 as Sphere, a9 as InstancedBufferGeometry, aa as Float32BufferAttribute, ab as InstancedInterleavedBuffer, ac as WireframeGeometry, ad as ShaderMaterial, ae as UniformsUtils, af as UniformsLib, ag as Vector4, ah as Line3, ai as SphereGeometry, aj as _extends, ak as Plane, al as Triangle, am as BackSide, an as Ray$1, ao as jsxRuntimeExports, ap as Matrix3, aq as CoordinationType, ar as Data3DTexture, as as RedFormat, at as FloatType, au as getImageSize, av as Scene } from "./index-BNUI-w49.js";
1
+ import { G as Group, M as Matrix4, T as TrianglesDrawMode, a as TriangleFanDrawMode, b as TriangleStripDrawMode, R as REVISION, L as Loader, c as LoaderUtils, F as FileLoader, d as MeshPhysicalMaterial, V as Vector2, C as Color, S as SpotLight, P as PointLight, D as DirectionalLight, e as Vector3, I as InstancedMesh, Q as Quaternion, O as Object3D, f as TextureLoader, g as ImageBitmapLoader, B as BufferAttribute, h as InterleavedBuffer, i as LinearMipmapLinearFilter, N as NearestMipmapLinearFilter, j as LinearMipmapNearestFilter, k as NearestMipmapNearestFilter, l as LinearFilter, m as NearestFilter, n as RepeatWrapping, o as MirroredRepeatWrapping, p as ClampToEdgeWrapping, q as PointsMaterial, r as Material, s as LineBasicMaterial, t as MeshStandardMaterial, u as DoubleSide, v as MeshBasicMaterial, w as PropertyBinding, x as BufferGeometry, y as SkinnedMesh, z as Mesh, A as LineSegments, E as Line$1, H as LineLoop, J as Points, K as PerspectiveCamera, U as MathUtils, W as OrthographicCamera, X as Skeleton, Y as InterpolateDiscrete, Z as InterpolateLinear, _ as AnimationClip, $ as Bone, a0 as InterleavedBufferAttribute, a1 as Texture, a2 as VectorKeyframeTrack, a3 as QuaternionKeyframeTrack, a4 as NumberKeyframeTrack, a5 as FrontSide, a6 as Interpolant, a7 as Box3, a8 as Sphere, a9 as InstancedBufferGeometry, aa as Float32BufferAttribute, ab as InstancedInterleavedBuffer, ac as WireframeGeometry, ad as ShaderMaterial, ae as UniformsUtils, af as UniformsLib, ag as Vector4, ah as Line3, ai as SphereGeometry, aj as _extends, ak as Plane, al as Triangle, am as BackSide, an as Ray$1, ao as jsxRuntimeExports, ap as Matrix3, aq as CoordinationType, ar as Data3DTexture, as as RedFormat, at as FloatType, au as getImageSize, av as Scene } from "./index-se6p8sp4.js";
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  import * as React from "react";
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  import { useRef, useEffect, useState, forwardRef } from "react";
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- import { u as useThree, a as useFrame, c as create, e as extend, b as createPortal, O as OrbitControls, C as Canvas } from "./OrbitControls-CeIrm0B5.js";
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+ import { u as useThree, a as useFrame, c as create, e as extend, b as createPortal, O as OrbitControls, C as Canvas } from "./OrbitControls-CYynRaKW.js";
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  const isPromise = (promise) => typeof promise === "object" && typeof promise.then === "function";
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  const globalCache = [];
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  function shallowEqualArrays(arrA, arrB, equal = (a, b) => a === b) {
@@ -5027,7 +5027,7 @@ const Text = /* @__PURE__ */ React.forwardRef(({
5027
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  const {
5028
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  Text: TextMeshImpl,
5029
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  preloadFont
5030
- } = suspend(async () => import("./troika-three-text.esm-C8Q3aJRr.js"), []);
5030
+ } = suspend(async () => import("./troika-three-text.esm-BtJXS2ob.js"), []);
5031
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  const invalidate = useThree(({
5032
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  invalidate: invalidate2
5033
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  }) => invalidate2);
@@ -10838,7 +10838,10 @@ const spatialdataZarrSchema = z.object({
10838
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  obsSets: obsSetsSpatialdataSchema,
10839
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  obsEmbedding: obsEmbeddingSpatialdataSchemaConvenience,
10840
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  // TODO: obsLabels
10841
- // TODO: featureLabels
10841
+ featureLabels: z.union([
10842
+ annDataFeatureLabels,
10843
+ z.array(annDataConvenienceFeatureLabelsItem)
10844
+ ]),
10842
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  // TODO: allow specifying tablePath and region at the top-level here.
10843
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  coordinateSystem: z.string().optional().describe("The name of a coordinate transformation output used to transform all elements which lack a per-element coordinateSystem property.")
10844
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  }).partial();
@@ -209319,22 +209322,22 @@ async function getDecoder(fileDirectory) {
209319
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  const Decoder = await importFn();
209320
209323
  return new Decoder(fileDirectory);
209321
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  }
209322
- addDecoder([void 0, 1], () => import("./raw-CDmwxpDL.js").then((m2) => m2.default));
209323
- addDecoder(5, () => import("./lzw-BlOU-CBg.js").then((m2) => m2.default));
209325
+ addDecoder([void 0, 1], () => import("./raw-CGkykmix.js").then((m2) => m2.default));
209326
+ addDecoder(5, () => import("./lzw-KgXyy-19.js").then((m2) => m2.default));
209324
209327
  addDecoder(6, () => {
209325
209328
  throw new Error("old style JPEG compression is not supported.");
209326
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  });
209327
- addDecoder(7, () => import("./jpeg-BB_ilRwM.js").then((m2) => m2.default));
209328
- addDecoder([8, 32946], () => import("./deflate-BmPQfLH1.js").then((m2) => m2.default));
209329
- addDecoder(32773, () => import("./packbits-BkMUG84m.js").then((m2) => m2.default));
209330
+ addDecoder(7, () => import("./jpeg-BUtzsoPi.js").then((m2) => m2.default));
209331
+ addDecoder([8, 32946], () => import("./deflate-Bi9jTZa_.js").then((m2) => m2.default));
209332
+ addDecoder(32773, () => import("./packbits-Bmv1iZNF.js").then((m2) => m2.default));
209330
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  addDecoder(
209331
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  34887,
209332
- () => import("./lerc-STi5EC9q.js").then(async (m2) => {
209335
+ () => import("./lerc-B9pxOoW2.js").then(async (m2) => {
209333
209336
  await m2.zstd.init();
209334
209337
  return m2;
209335
209338
  }).then((m2) => m2.default)
209336
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  );
209337
- addDecoder(50001, () => import("./webimage-C4EDX2gd.js").then((m2) => m2.default));
209340
+ addDecoder(50001, () => import("./webimage-C9QSeLIa.js").then((m2) => m2.default));
209338
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  function copyNewSize(array2, width2, height2, samplesPerPixel = 1) {
209339
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  return new (Object.getPrototypeOf(array2)).constructor(width2 * height2 * samplesPerPixel);
209340
209343
  }
@@ -253030,12 +253033,12 @@ class ErrorBoundary extends React__default.Component {
253030
253033
  }
253031
253034
  }
253032
253035
  const LazySpatialThree = React__default.lazy(async () => {
253033
- const { SpatialWrapper: SpatialWrapper2 } = await import("./index-BR7YdakD.js");
253036
+ const { SpatialWrapper: SpatialWrapper2 } = await import("./index-SV2fA7OO.js");
253034
253037
  return { default: SpatialWrapper2 };
253035
253038
  });
253036
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  const SpatialThreeAdapter = React__default.forwardRef((props, ref2) => jsxRuntimeExports.jsx("div", { ref: ref2, style: { width: "100%", height: "100%" }, children: jsxRuntimeExports.jsx(ErrorBoundary, { children: jsxRuntimeExports.jsx(Suspense, { fallback: jsxRuntimeExports.jsx("div", { children: "Loading..." }), children: jsxRuntimeExports.jsx(LazySpatialThree, { ...props }) }) }) }));
253037
253040
  const LazySpatialAccelerated = React__default.lazy(async () => {
253038
- const { SpatialWrapper: SpatialWrapper2 } = await import("./index-BWxI6QUS.js");
253041
+ const { SpatialWrapper: SpatialWrapper2 } = await import("./index-BiA0XI99.js");
253039
253042
  return { default: SpatialWrapper2 };
253040
253043
  });
253041
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  const SpatialAcceleratedAdapter = React__default.forwardRef((props, ref2) => jsxRuntimeExports.jsx("div", { ref: ref2, style: { width: "100%", height: "100%" }, children: jsxRuntimeExports.jsx(ErrorBoundary, { children: jsxRuntimeExports.jsx(Suspense, { fallback: jsxRuntimeExports.jsx("div", { children: "Loading..." }), children: jsxRuntimeExports.jsx(LazySpatialAccelerated, { ...props }) }) }) }));
@@ -266236,7 +266239,7 @@ function HiglassGlobalStyles(props) {
266236
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  }
266237
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  register({ dataFetcher: ZarrMultivecDataFetcher_default, config: ZarrMultivecDataFetcher_default.config }, { pluginType: "dataFetcher" });
266238
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  const LazyHiGlassComponent = React__default.lazy(async () => {
266239
- const { HiGlassComponent } = await import("./higlass-CHvsEtQd.js");
266242
+ const { HiGlassComponent } = await import("./higlass-DlJQBL8o.js");
266240
266243
  return { default: HiGlassComponent };
266241
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  });
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  const HG_SIZE = 800;
@@ -269183,7 +269186,7 @@ function NeuroglancerGlobalStyles(props) {
269183
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  const { classes: classes2 } = props;
269184
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  return jsxRuntimeExports.jsxs(jsxRuntimeExports.Fragment, { children: [jsxRuntimeExports.jsx(GlobalStyles$3, { styles: globalNeuroglancerCss }), jsxRuntimeExports.jsx(ScopedGlobalStyles, { styles: globalNeuroglancerStyles, parentClassName: classes2.neuroglancerWrapper })] });
269185
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  }
269186
- const LazyReactNeuroglancer = React__default.lazy(() => import("./ReactNeuroglancer-BoUKguqy.js"));
269189
+ const LazyReactNeuroglancer = React__default.lazy(() => import("./ReactNeuroglancer-B784BBrr.js"));
269187
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  function createWorker() {
269188
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  return new WorkerFactory();
269189
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  }
@@ -357446,6 +357449,13 @@ class SpatialDataObsEmbeddingLoader extends ObsEmbeddingAnndataLoader {
357446
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  this.tablePath = this.options.tablePath;
357447
357450
  }
357448
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  }
357452
+ class SpatialDataFeatureLabelsLoader extends FeatureLabelsAnndataLoader {
357453
+ constructor(dataSource, params2) {
357454
+ super(dataSource, params2);
357455
+ this.region = this.options.region;
357456
+ this.tablePath = this.options.tablePath;
357457
+ }
357458
+ }
357449
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  class PrecomputedMeshSource {
357450
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  constructor({ url, requestInit: requestInit2 }) {
357451
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  this.url = url;
@@ -378792,7 +378802,20 @@ function expandSpatialdataZarr(fileDef) {
378792
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  // TODO: obsPoints?
378793
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  // TODO: obsLocations?
378794
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  // TODO: obsLabels
378795
- // TODO: featureLabels
378805
+ // featureLabels
378806
+ ...options.featureLabels ? [{
378807
+ ...baseFileDef,
378808
+ fileType: getFileType(FileType$1.FEATURE_LABELS_SPATIALDATA_ZARR),
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+ options: {
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+ ...options.featureLabels,
378811
+ tablePath: options.tablePath,
378812
+ region: options.region
378813
+ },
378814
+ coordinationValues: {
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+ ...extraCoordinationValues,
378816
+ featureType: baseFileDef.coordinationValues.featureType
378817
+ }
378818
+ }] : [],
378796
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  // obsEmbedding
378797
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  // eslint-disable-next-line no-nested-ternary
378798
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  ...options.obsEmbedding ? Array.isArray(options.obsEmbedding) ? options.obsEmbedding.map((oe) => ({
@@ -379245,7 +379268,7 @@ const baseFileTypes = [
379245
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  ...makeZarrFileTypes(FileType$1.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR, DataType$3.OBS_FEATURE_MATRIX, ObsFeatureMatrixAnndataLoader, SpatialDataTableSource, obsFeatureMatrixSpatialdataSchema),
379246
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  ...makeZarrFileTypes(FileType$1.OBS_SETS_SPATIALDATA_ZARR, DataType$3.OBS_SETS, SpatialDataObsSetsLoader, SpatialDataTableSource, obsSetsSpatialdataSchema),
379247
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  ...makeZarrFileTypes(FileType$1.OBS_EMBEDDING_SPATIALDATA_ZARR, DataType$3.OBS_EMBEDDING, SpatialDataObsEmbeddingLoader, SpatialDataTableSource, obsEmbeddingSpatialdataSchema),
379248
- ...makeZarrFileTypes(FileType$1.FEATURE_LABELS_SPATIALDATA_ZARR, DataType$3.FEATURE_LABELS, FeatureLabelsAnndataLoader, SpatialDataTableSource, featureLabelsAnndataSchema),
379271
+ ...makeZarrFileTypes(FileType$1.FEATURE_LABELS_SPATIALDATA_ZARR, DataType$3.FEATURE_LABELS, SpatialDataFeatureLabelsLoader, SpatialDataTableSource, featureLabelsAnndataSchema),
379249
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  makeFileType(FileType$1.OBS_SEGMENTATIONS_GLB, DataType$3.OBS_SEGMENTATIONS, GlbDataLoader, GlbSource, meshGlbSchema),
379250
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  makeFileType(FileType$1.OBS_SEGMENTATIONS_NG_PRECOMPUTED, DataType$3.OBS_SEGMENTATIONS, PrecomputedMeshDataLoader, PrecomputedMeshSource, ngSchema),
379251
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  // All legacy file types
package/dist/index.js CHANGED
@@ -1,4 +1,4 @@
1
- import { bQ, bO, bM, bP, bN, bL, bR } from "./index-BNUI-w49.js";
1
+ import { bQ, bO, bM, bP, bN, bL, bR } from "./index-se6p8sp4.js";
2
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  import { useComplexCoordination, useComplexCoordinationSecondary, useCoordination, useCoordinationScopes, useCoordinationScopesBy, useGridItemSize, useMultiCoordinationScopesNonNull, useMultiCoordinationScopesSecondaryNonNull, usePageModeView } from "@vitessce/vit-s";
3
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  export {
4
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  bQ as PluginAsyncFunction,
@@ -1,4 +1,4 @@
1
- import { aW as BaseDecoder } from "./index-BNUI-w49.js";
1
+ import { aW as BaseDecoder } from "./index-se6p8sp4.js";
2
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  const dctZigZag = new Int32Array([
3
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  0,
4
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  1,
@@ -1,5 +1,5 @@
1
1
  import { i as inflate_1 } from "./pako.esm-SxljTded.js";
2
- import { aF as getDefaultExportFromCjs, aW as BaseDecoder, aX as LercParameters, aY as LercAddCompression } from "./index-BNUI-w49.js";
2
+ import { aF as getDefaultExportFromCjs, aW as BaseDecoder, aX as LercParameters, aY as LercAddCompression } from "./index-se6p8sp4.js";
3
3
  var LercDecode = { exports: {} };
4
4
  var hasRequiredLercDecode;
5
5
  function requireLercDecode() {
@@ -1,4 +1,4 @@
1
- import { aW as BaseDecoder } from "./index-BNUI-w49.js";
1
+ import { aW as BaseDecoder } from "./index-se6p8sp4.js";
2
2
  const MIN_BITS = 9;
3
3
  const CLEAR_CODE = 256;
4
4
  const EOI_CODE = 257;
@@ -1,4 +1,4 @@
1
- import { aW as BaseDecoder } from "./index-BNUI-w49.js";
1
+ import { aW as BaseDecoder } from "./index-se6p8sp4.js";
2
2
  class PackbitsDecoder extends BaseDecoder {
3
3
  decodeBlock(buffer) {
4
4
  const dataView = new DataView(buffer);
@@ -1,4 +1,4 @@
1
- import { aW as BaseDecoder } from "./index-BNUI-w49.js";
1
+ import { aW as BaseDecoder } from "./index-se6p8sp4.js";
2
2
  class RawDecoder extends BaseDecoder {
3
3
  decodeBlock(buffer) {
4
4
  return buffer;
@@ -1,4 +1,4 @@
1
- import { bG as MeshDistanceMaterial, bH as MeshDepthMaterial, bI as RGBADepthPacking, ae as UniformsUtils, bJ as ShaderChunk, a9 as InstancedBufferGeometry, a8 as Sphere, a7 as Box3, am as BackSide, u as DoubleSide, z as Mesh, a5 as FrontSide, v as MeshBasicMaterial, C as Color, e as Vector3, M as Matrix4, V as Vector2, ap as Matrix3, ag as Vector4, a1 as Texture, l as LinearFilter, aD as PlaneGeometry, x as BufferGeometry, aa as Float32BufferAttribute, bK as InstancedBufferAttribute } from "./index-BNUI-w49.js";
1
+ import { bG as MeshDistanceMaterial, bH as MeshDepthMaterial, bI as RGBADepthPacking, ae as UniformsUtils, bJ as ShaderChunk, a9 as InstancedBufferGeometry, a8 as Sphere, a7 as Box3, am as BackSide, u as DoubleSide, z as Mesh, a5 as FrontSide, v as MeshBasicMaterial, C as Color, e as Vector3, M as Matrix4, V as Vector2, ap as Matrix3, ag as Vector4, a1 as Texture, l as LinearFilter, aD as PlaneGeometry, x as BufferGeometry, aa as Float32BufferAttribute, bK as InstancedBufferAttribute } from "./index-se6p8sp4.js";
2
2
  function workerBootstrap() {
3
3
  var modules = /* @__PURE__ */ Object.create(null);
4
4
  function registerModule(ref, callback) {
@@ -1,4 +1,4 @@
1
- import { aW as BaseDecoder } from "./index-BNUI-w49.js";
1
+ import { aW as BaseDecoder } from "./index-se6p8sp4.js";
2
2
  class WebImageDecoder extends BaseDecoder {
3
3
  constructor() {
4
4
  super();
@@ -363,6 +363,22 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
363
363
  embeddingType: string;
364
364
  dims?: number[] | undefined;
365
365
  }>, "many">]>>;
366
+ featureLabels: z.ZodOptional<z.ZodUnion<[z.ZodObject<{
367
+ path: z.ZodString;
368
+ }, "strip", z.ZodTypeAny, {
369
+ path: string;
370
+ }, {
371
+ path: string;
372
+ }>, z.ZodArray<z.ZodObject<{
373
+ path: z.ZodString;
374
+ featureLabelsType: z.ZodString;
375
+ }, "strip", z.ZodTypeAny, {
376
+ path: string;
377
+ featureLabelsType: string;
378
+ }, {
379
+ path: string;
380
+ featureLabelsType: string;
381
+ }>, "many">]>>;
366
382
  coordinateSystem: z.ZodOptional<z.ZodOptional<z.ZodString>>;
367
383
  }, "strip", z.ZodTypeAny, {
368
384
  image?: {
@@ -408,6 +424,12 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
408
424
  embeddingType: string;
409
425
  dims?: number[] | undefined;
410
426
  }[] | undefined;
427
+ featureLabels?: {
428
+ path: string;
429
+ } | {
430
+ path: string;
431
+ featureLabelsType: string;
432
+ }[] | undefined;
411
433
  coordinateSystem?: string | undefined;
412
434
  }, {
413
435
  image?: {
@@ -453,6 +475,12 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
453
475
  embeddingType: string;
454
476
  dims?: number[] | undefined;
455
477
  }[] | undefined;
478
+ featureLabels?: {
479
+ path: string;
480
+ } | {
481
+ path: string;
482
+ featureLabelsType: string;
483
+ }[] | undefined;
456
484
  coordinateSystem?: string | undefined;
457
485
  }>> | PluginJointFileType<z.ZodObject<{
458
486
  xy: z.ZodOptional<z.ZodString>;
@@ -1 +1 @@
1
- {"version":3,"file":"base-plugins.d.ts","sourceRoot":"","sources":["../src/base-plugins.ts"],"names":[],"mappings":"AAWA,OAAO,EACL,cAAc,EACd,mBAAmB,EACnB,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,KAAK,EACV,UAAU,EACV,UAAU,EACX,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,CAAC,EAqDF,MAAM,mBAAmB,CAAC;AAkL3B,eAAO,MAAM,aAAa,kBA8BzB,CAAC;AAEF,eAAO,MAAM,aAAa,wDA2EzB,CAAC;AAEF,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yBAwGzB,CAAA;gCACwB,CAAC;;;yBAIb,CAAC;gCAAsD,CAAC;;;;;;;;;;;;;;;;iBAeZ,CAAC;;;;iBAIpC,CAAC;;;;;;;YAOtB,CAAC;;;YAGG,CAAC;;;;;;;YAKL,CAAC;;;YAEH,CAAA;;;;;;;YAKqB,CAAC;;;YAEW,CAAC;;;;;;;;;;;;;;YAkBK,CAAC;;;YAIxB,CAAC;;;;;;;;YAWT,CAAC;;;;YAIO,CAAC;;;;;;;;;;;;;;;;;;;;;;;;yBAMgC,CAAC;gCAChC,CAAC;;;;;;;;iBAEsD,CAAC;;;;YACF,CAAC;;;;YACH,CAAC;;;;YACX,CAAC;;;;;;;YAExB,CAAC;;;;YACU,CAAC;;;;;;;;;;;;;;;;;;;;yBAIhC,CAAC;gCAAuD,CAAA;;;;;;;;iBAGjE,CAAC;;;;YAA8F,CAAC;;;;YACjC,CAAA;;;;YACG,CAAC;;;;;;;YAEhC,CAAC;;;;YACzB,CAAC;;;;;;;;;;;wBAwDm1E,CAAC;;;wBAA6E,CAAC;;;;;;;;iBAAwR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;iBAAiR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;yBAAkZ,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;yBAA8E,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;;;;;iBAAgR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;;;qBAAygB,CAAC;;;;qBAA2J,CAAC;;;;;;qBAAsN,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;qBAA0K,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;;YAAoP,CAAC;;;YAAmE,CAAC;;;;;;;;YAAuR,CAAC;;;;YAAkG,CAAC;;;;;;wBAAqM,CAAC;;;;iBAAyG,CAAC;wBAA8C,CAAC;;;;iBAAkG,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;YAAgG,CAAC;;;;YAAmG,CAAC;;;;;;wBAAyJ,CAAC;;;;iBAAyG,CAAC;wBAA8C,CAAC;;;;iBAAkG,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;YAAgG,CAAC;;;;YAAmG,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBApiBvgS,CAAC;;;;;qBAGkB,CAAC;qBAA4C,CAAC;;;;;;;;;qBAI/B,CAAC;6BAAoD,CAAC;;sBAClC,CAAC;;;;;qBAQzC,CAAC;qBAEZ,CAAC;;;;;;;;;qBAWD,CAAC;6BAEK,CAAC;;;;;;;;;;;;;kBAuBH,CAAA;mBAGE,CAAC;gBACkB,CAAC;gBAEzB,CAAC;uBAEH,CAAF;iBACU,CAAC;oBACS,CAAC;oBAER,CAAC;qBAEZ,CAAF;;kBAC0B,CAAC;mBAEvB,CAAC;gBACmB,CAAC;gBAGlB,CAAC;uBAEe,CAAC;iBACC,CAAC;oBAIrB,CAAA;oBAEgB,CAAC;qBAET,CAAC;;;;;;gBAMZ,CAAD;sBAA0B,CAAC;;;;;qBAOD,CAAC;qBAGC,CAAC;;;;;;;;;qBAaH,CAAC;6BAGzB,CAAC;;mBAEuB,CAAC;kBAExB,CAAC;mBAEL,CAAC;gBAEU,CAAC;gBACS,CAAC;uBAElB,CAAC;iBAEF,CAAC;oBACoB,CAAC;oBAEP,CAAC;qBAEA,CAAC;;;;;;gBAKmB,CAAC;sBAC9B,CAAC;;;;;qBAI6C,CAAC;qBAA4C,CAAC;;;;;;;;;qBAGtC,CAAC;6BAChC,CAAC;;mBACO,CAAC;kBAAsB,CAAC;mBAAyC,CAAC;gBAAmD,CAAC;gBAClJ,CAAC;uBACN,CAAC;iBACgB,CAAC;oBAA0C,CAAC;oBAG7D,CAAC;qBAA2C,CAAC;;;;;;;;;gBAG3B,CAAC;sBACN,CAAC;;;;;qBAOM,CAAC;qBACjB,CAAC;;;;;;;;;qBAGmC,CAAC;6BACC,CAAC;;mBAEjD,CAAD;kBAAsB,CAAC;mBACZ,CAAC;gBACX,CAAC;gBAAuC,CAAA;uBACzB,CAAC;iBAAuC,CAAC;oBACrC,CAAC;oBACT,CAAC;qBAA2C,CAAC;;;;;;;;;;;gBAIvC,CAAC;sBAClB,CAAD;;;;;qBAGe,CAAC;qBAA4C,CAAC;;;;;;;;;qBAI/B,CAAC;6BACD,CAAC;;mBACZ,CAAC;kBAAsB,CAAC;mBACzC,CAAC;gBAAmD,CAAC;gBACtD,CAAC;uBAA6C,CAAC;iBAAuC,CAAC;oBAKvF,CADF;oBACkB,CAAC;qBAA2C,CAAC;;;;;;;;;;;;;;OA6F9D,CAAC;AAIF,eAAO,MAAM,qBAAqB;;;;;;;;aA7WtB,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cACQ,CAAC;eACW,CAAC;;;;;;;;;;;;;;;;;;;aAqBE,CAAC;cAC1B,CAAC;eAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;aApE/B,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cACQ,CAAC;eACW,CAAC;;;;;;;;;;;;;;;;;;;aAqBE,CAAC;cAC1B,CAAC;eAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kzBA2hB1C,CAAC;AAEF,eAAO,MAAM,kBAAkB,uBAK9B,CAAC"}
1
+ {"version":3,"file":"base-plugins.d.ts","sourceRoot":"","sources":["../src/base-plugins.ts"],"names":[],"mappings":"AAWA,OAAO,EACL,cAAc,EACd,mBAAmB,EACnB,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,KAAK,EACV,UAAU,EACV,UAAU,EACX,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,CAAC,EAqDF,MAAM,mBAAmB,CAAC;AAmL3B,eAAO,MAAM,aAAa,kBA8BzB,CAAC;AAEF,eAAO,MAAM,aAAa,wDA2EzB,CAAC;AAEF,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yBAuGwD,CAAC;gCAClE,CAAC;;;yBAGF,CAAC;gCAEa,CAAC;;;;;;;;;;;;;;;;iBAeZ,CAAC;;;;iBAGrB,CAAJ;;;;;;;YAOqB,CAAC;;;YAGpB,CAAC;;;;;;;YAK0G,CAAC;;;YAExG,CAAC;;;;;;;YAKU,CAAC;;;YAGd,CAAJ;;;;;;;;;;;;;;YAkBK,CAAC;;;YAEQ,CAAC;;;;;;;;YAYX,CAAC;;;;YAGS,CAAC;;;;;;;;;;;;;;;;;;;;;;;;yBAQA,CAAC;gCAAsD,CAAC;;;;;;;;iBAGhC,CAAC;;;;YACF,CAAC;;;;YACH,CAAC;;;;YACX,CAAC;;;;;;;YAExB,CAAC;;;;YACU,CAAC;;;;;;;;;;;;;;;;;;;;yBAG4F,CAAC;gCACtE,CAAC;;;;;;;;iBAEsD,CAAC;;;;YACzB,CAAC;;;;YAClC,CAAC;;;;YACG,CAAC;;;;;;;YAEhC,CAAC;;;;YAAmG,CAAC;;;;;;;;;;;wBAyDutE,CAAC;;;wBAA6E,CAAC;;;;;;;;iBAAwR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;iBAAiR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;yBAAkZ,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;yBAA8E,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;;;;;iBAAgR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;;;qBAAygB,CAAC;;;;qBAA2J,CAAC;;;;;;qBAAsN,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;qBAA0K,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;;YAAoP,CAAC;;;YAAmE,CAAC;;;;;;;;YAAuR,CAAC;;;;YAAkG,CAAC;;;;;;;;;;;;;;;;;;;;;;wBAAmoB,CAAC;;;;iBAAyG,CAAC;wBAA8C,CAAC;;;;iBAAkG,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;YAAgG,CAAC;;;;YAAmG,CAAC;;;;;;;;;;;;wBAA6R,CAAC;;;;iBAAyG,CAAC;wBAA8C,CAAC;;;;iBAAkG,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;YAAgG,CAAC;;;;YAAmG,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBAriBniT,CAAC;;;;;qBAGkB,CAAC;qBAA4C,CAAC;;;;;;;;;qBAI/B,CAAC;6BAAoD,CAAC;;sBAClC,CAAC;;;;;qBAQzC,CAAC;qBAEZ,CAAC;;;;;;;;;qBAWD,CAAC;6BAEK,CAAC;;;;;;;;;;;;;kBAuBH,CAAA;mBAGE,CAAC;gBACkB,CAAC;gBAEzB,CAAC;uBAEH,CAAF;iBACU,CAAC;oBACS,CAAC;oBAER,CAAC;qBAEZ,CAAF;;kBAC0B,CAAC;mBAEvB,CAAC;gBACmB,CAAC;gBAGlB,CAAC;uBAEe,CAAC;iBACC,CAAC;oBAIrB,CAAA;oBAEgB,CAAC;qBAET,CAAC;;;;;;gBAMZ,CAAD;sBAA0B,CAAC;;;;;qBAOR,CAAC;qBAGjB,CAAC;;;;;;;;;qBAaoB,CAAC;6BAEd,CAAC;;mBAGF,CAAC;kBACI,CAAC;mBAEL,CAAC;gBAEK,CAAC;gBAEH,CAAC;uBAEV,CAAC;iBACE,CAAC;oBAEC,CAAC;oBAEV,CAAC;qBAEC,CAAC;;;;;;gBAMD,CAAC;sBAA0B,CAAC;;;;;qBAKX,CAAC;qBAA4C,CAAC;;;;;;;;;qBAGtC,CAAC;6BAE/B,CADA;;mBACO,CAAC;kBAAsB,CAAC;mBAAyC,CAAC;gBAAmD,CAAC;gBAAuC,CAAA;uBAC3I,CAAC;iBACZ,CAAC;oBACmB,CAAC;oBAA0C,CAAC;qBAG5D,CAAC;;;;;;;;;gBAEiD,CAAC;sBACjD,CAAA;;;;;qBAOK,CAAC;qBACa,CAAC;;;;;;;;;qBAI1B,CAAC;6BACC,CAAC;;mBACW,CAAC;kBAAsB,CAAC;mBACrB,CAAC;gBACF,CAAC;gBACxB,CAAC;uBAA6C,CAAC;iBAC/B,CAAC;oBAA0C,CAAC;oBACrC,CAAC;qBACR,CAAC;;;;;;;;;;;gBAG8B,CAAC;sBAC3C,CAAC;;;;;qBAG+B,CAAC;qBAClB,CAAC;;;;;;;;;qBAGgC,CAAC;6BACX,CAAC;;mBACW,CAAC;kBACtD,CAAC;mBAAyC,CAAC;gBAC/B,CAAC;gBAAsC,CAAC;uBAC/C,CAAC;iBAAuC,CAAC;oBACvD,CAAC;oBAGQ,CAAA;qBACmB,CAAC;;;;;;;;;;;;;;OA6F5B,CAAC;AAIF,eAAO,MAAM,qBAAqB;;;;;;;;aA9WtB,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cACQ,CAAC;eACW,CAAC;;;;;;;;;;;;;;;;;;;aAqBE,CAAC;cAC1B,CAAC;eAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;aApE/B,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cACQ,CAAC;eACW,CAAC;;;;;;;;;;;;;;;;;;;aAqBE,CAAC;cAC1B,CAAC;eAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kzBA4hB1C,CAAC;AAEF,eAAO,MAAM,kBAAkB,uBAK9B,CAAC"}
@@ -37,7 +37,7 @@ import {
37
37
  // OME
38
38
  OmeZarrLoader, OmeZarrAsObsSegmentationsLoader,
39
39
  // SpatialData
40
- SpatialDataTableSource, SpatialDataShapesSource, SpatialDataPointsSource, SpatialDataImageLoader, SpatialDataLabelsLoader, SpatialDataObsSpotsLoader, SpatialDataObsPointsLoader, SpatialDataObsSegmentationsLoader, SpatialDataObsSetsLoader, SpatialDataObsEmbeddingLoader,
40
+ SpatialDataTableSource, SpatialDataShapesSource, SpatialDataPointsSource, SpatialDataImageLoader, SpatialDataLabelsLoader, SpatialDataObsSpotsLoader, SpatialDataObsPointsLoader, SpatialDataObsSegmentationsLoader, SpatialDataObsSetsLoader, SpatialDataObsEmbeddingLoader, SpatialDataFeatureLabelsLoader,
41
41
  // NG precomputed
42
42
  NgPrecomputedMeshSource, NgPrecomputedMeshLoader, } from '@vitessce/spatial-zarr';
43
43
  import { OmeTiffAsObsSegmentationsLoader, OmeTiffLoader, OmeTiffSource, } from '@vitessce/ome-tiff';
@@ -157,7 +157,7 @@ export const baseFileTypes = [
157
157
  ...makeZarrFileTypes(FileType.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR, DataType.OBS_FEATURE_MATRIX, ObsFeatureMatrixAnndataLoader, SpatialDataTableSource, obsFeatureMatrixSpatialdataSchema),
158
158
  ...makeZarrFileTypes(FileType.OBS_SETS_SPATIALDATA_ZARR, DataType.OBS_SETS, SpatialDataObsSetsLoader, SpatialDataTableSource, obsSetsSpatialdataSchema),
159
159
  ...makeZarrFileTypes(FileType.OBS_EMBEDDING_SPATIALDATA_ZARR, DataType.OBS_EMBEDDING, SpatialDataObsEmbeddingLoader, SpatialDataTableSource, obsEmbeddingSpatialdataSchema),
160
- ...makeZarrFileTypes(FileType.FEATURE_LABELS_SPATIALDATA_ZARR, DataType.FEATURE_LABELS, FeatureLabelsAnndataLoader, SpatialDataTableSource, featureLabelsAnndataSchema),
160
+ ...makeZarrFileTypes(FileType.FEATURE_LABELS_SPATIALDATA_ZARR, DataType.FEATURE_LABELS, SpatialDataFeatureLabelsLoader, SpatialDataTableSource, featureLabelsAnndataSchema),
161
161
  makeFileType(FileType.OBS_SEGMENTATIONS_GLB, DataType.OBS_SEGMENTATIONS, GlbLoader, GlbSource, meshGlbSchema),
162
162
  makeFileType(FileType.OBS_SEGMENTATIONS_NG_PRECOMPUTED, DataType.OBS_SEGMENTATIONS, NgPrecomputedMeshLoader, NgPrecomputedMeshSource, ngSchema),
163
163
  // All legacy file types
@@ -1 +1 @@
1
- {"version":3,"file":"joint-file-types.d.ts","sourceRoot":"","sources":["../src/joint-file-types.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAC7B,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,mBAAmB,CAAC;AA6B7D,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,SAsO7E;AAED,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,SAoJjF"}
1
+ {"version":3,"file":"joint-file-types.d.ts","sourceRoot":"","sources":["../src/joint-file-types.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAC7B,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,mBAAmB,CAAC;AA6B7D,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,SAsO7E;AAED,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,SAiKjF"}
@@ -303,7 +303,20 @@ export function expandSpatialdataZarr(fileDef) {
303
303
  // TODO: obsPoints?
304
304
  // TODO: obsLocations?
305
305
  // TODO: obsLabels
306
- // TODO: featureLabels
306
+ // featureLabels
307
+ ...(options.featureLabels ? [{
308
+ ...baseFileDef,
309
+ fileType: getFileType(FileType.FEATURE_LABELS_SPATIALDATA_ZARR),
310
+ options: {
311
+ ...options.featureLabels,
312
+ tablePath: options.tablePath,
313
+ region: options.region,
314
+ },
315
+ coordinationValues: {
316
+ ...extraCoordinationValues,
317
+ featureType: baseFileDef.coordinationValues.featureType,
318
+ },
319
+ }] : []),
307
320
  // obsEmbedding
308
321
  // eslint-disable-next-line no-nested-ternary
309
322
  ...(options.obsEmbedding ? (Array.isArray(options.obsEmbedding) ? options.obsEmbedding.map((oe) => ({
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@vitessce/all",
3
- "version": "3.8.2",
3
+ "version": "3.8.4",
4
4
  "author": "HIDIVE Lab at HMS",
5
5
  "homepage": "http://vitessce.io",
6
6
  "repository": {
@@ -17,38 +17,38 @@
17
17
  ],
18
18
  "dependencies": {
19
19
  "zod": "^3.21.4",
20
- "@vitessce/styles": "3.8.2",
21
- "@vitessce/constants-internal": "3.8.2",
22
- "@vitessce/abstract": "3.8.2",
23
- "@vitessce/error": "3.8.2",
24
- "@vitessce/csv": "3.8.2",
25
- "@vitessce/description": "3.8.2",
26
- "@vitessce/feature-list": "3.8.2",
27
- "@vitessce/genomic-profiles": "3.8.2",
28
- "@vitessce/heatmap": "3.8.2",
29
- "@vitessce/glb": "3.8.2",
30
- "@vitessce/json": "3.8.2",
31
- "@vitessce/layer-controller": "3.8.2",
32
- "@vitessce/layer-controller-beta": "3.8.2",
33
- "@vitessce/link-controller": "3.8.2",
34
- "@vitessce/obs-sets-manager": "3.8.2",
35
- "@vitessce/ome-tiff": "3.8.2",
36
- "@vitessce/plugins": "3.8.2",
37
- "@vitessce/scatterplot-embedding": "3.8.2",
38
- "@vitessce/scatterplot-gating": "3.8.2",
39
- "@vitessce/schemas": "3.8.2",
40
- "@vitessce/spatial": "3.8.2",
41
- "@vitessce/spatial-beta": "3.8.2",
42
- "@vitessce/statistical-plots": "3.8.2",
43
- "@vitessce/status": "3.8.2",
44
- "@vitessce/vit-s": "3.8.2",
45
- "@vitessce/zarr": "3.8.2",
46
- "@vitessce/globals": "3.8.2",
47
- "@vitessce/spatial-zarr": "3.8.2",
48
- "@vitessce/spatial-three": "3.8.2",
49
- "@vitessce/spatial-accelerated": "3.8.2",
50
- "@vitessce/biomarker-select": "3.8.2",
51
- "@vitessce/neuroglancer": "3.8.2"
20
+ "@vitessce/styles": "3.8.4",
21
+ "@vitessce/constants-internal": "3.8.4",
22
+ "@vitessce/abstract": "3.8.4",
23
+ "@vitessce/error": "3.8.4",
24
+ "@vitessce/csv": "3.8.4",
25
+ "@vitessce/description": "3.8.4",
26
+ "@vitessce/feature-list": "3.8.4",
27
+ "@vitessce/genomic-profiles": "3.8.4",
28
+ "@vitessce/heatmap": "3.8.4",
29
+ "@vitessce/glb": "3.8.4",
30
+ "@vitessce/json": "3.8.4",
31
+ "@vitessce/layer-controller": "3.8.4",
32
+ "@vitessce/layer-controller-beta": "3.8.4",
33
+ "@vitessce/link-controller": "3.8.4",
34
+ "@vitessce/obs-sets-manager": "3.8.4",
35
+ "@vitessce/ome-tiff": "3.8.4",
36
+ "@vitessce/plugins": "3.8.4",
37
+ "@vitessce/scatterplot-embedding": "3.8.4",
38
+ "@vitessce/scatterplot-gating": "3.8.4",
39
+ "@vitessce/schemas": "3.8.4",
40
+ "@vitessce/spatial": "3.8.4",
41
+ "@vitessce/spatial-beta": "3.8.4",
42
+ "@vitessce/statistical-plots": "3.8.4",
43
+ "@vitessce/status": "3.8.4",
44
+ "@vitessce/vit-s": "3.8.4",
45
+ "@vitessce/zarr": "3.8.4",
46
+ "@vitessce/globals": "3.8.4",
47
+ "@vitessce/spatial-zarr": "3.8.4",
48
+ "@vitessce/spatial-three": "3.8.4",
49
+ "@vitessce/spatial-accelerated": "3.8.4",
50
+ "@vitessce/biomarker-select": "3.8.4",
51
+ "@vitessce/neuroglancer": "3.8.4"
52
52
  },
53
53
  "devDependencies": {
54
54
  "@types/react": "^18.0.28",
@@ -181,6 +181,7 @@ import {
181
181
  SpatialDataObsSegmentationsLoader,
182
182
  SpatialDataObsSetsLoader,
183
183
  SpatialDataObsEmbeddingLoader,
184
+ SpatialDataFeatureLabelsLoader,
184
185
  // NG precomputed
185
186
  NgPrecomputedMeshSource,
186
187
  NgPrecomputedMeshLoader,
@@ -340,7 +341,7 @@ export const baseFileTypes = [
340
341
  ...makeZarrFileTypes(FileType.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR, DataType.OBS_FEATURE_MATRIX, ObsFeatureMatrixAnndataLoader, SpatialDataTableSource, obsFeatureMatrixSpatialdataSchema),
341
342
  ...makeZarrFileTypes(FileType.OBS_SETS_SPATIALDATA_ZARR, DataType.OBS_SETS, SpatialDataObsSetsLoader, SpatialDataTableSource, obsSetsSpatialdataSchema),
342
343
  ...makeZarrFileTypes(FileType.OBS_EMBEDDING_SPATIALDATA_ZARR, DataType.OBS_EMBEDDING, SpatialDataObsEmbeddingLoader, SpatialDataTableSource, obsEmbeddingSpatialdataSchema),
343
- ...makeZarrFileTypes(FileType.FEATURE_LABELS_SPATIALDATA_ZARR, DataType.FEATURE_LABELS, FeatureLabelsAnndataLoader, SpatialDataTableSource, featureLabelsAnndataSchema),
344
+ ...makeZarrFileTypes(FileType.FEATURE_LABELS_SPATIALDATA_ZARR, DataType.FEATURE_LABELS, SpatialDataFeatureLabelsLoader, SpatialDataTableSource, featureLabelsAnndataSchema),
344
345
 
345
346
  makeFileType(FileType.OBS_SEGMENTATIONS_GLB, DataType.OBS_SEGMENTATIONS, GlbLoader, GlbSource, meshGlbSchema),
346
347
  makeFileType(FileType.OBS_SEGMENTATIONS_NG_PRECOMPUTED, DataType.OBS_SEGMENTATIONS, NgPrecomputedMeshLoader, NgPrecomputedMeshSource, ngSchema),
@@ -322,7 +322,20 @@ export function expandSpatialdataZarr(fileDef: z.infer<typeof latestFileDefSchem
322
322
  // TODO: obsPoints?
323
323
  // TODO: obsLocations?
324
324
  // TODO: obsLabels
325
- // TODO: featureLabels
325
+ // featureLabels
326
+ ...(options.featureLabels ? [{
327
+ ...baseFileDef,
328
+ fileType: getFileType(FileType.FEATURE_LABELS_SPATIALDATA_ZARR),
329
+ options: {
330
+ ...options.featureLabels,
331
+ tablePath: options.tablePath,
332
+ region: options.region,
333
+ },
334
+ coordinationValues: {
335
+ ...extraCoordinationValues,
336
+ featureType: baseFileDef.coordinationValues.featureType,
337
+ },
338
+ }] : []),
326
339
  // obsEmbedding
327
340
  // eslint-disable-next-line no-nested-ternary
328
341
  ...(options.obsEmbedding ? (