@vitessce/all 3.8.13 → 3.9.1

package/dist/{index-DZg7IgTe.js → index-DBnzUqAs.js}

@@ -1,7 +1,7 @@
-import { G as Group, M as Matrix4, T as TrianglesDrawMode, a as TriangleFanDrawMode, b as TriangleStripDrawMode, R as REVISION, L as Loader, c as LoaderUtils, F as FileLoader, d as MeshPhysicalMaterial, V as Vector2, C as Color, S as SpotLight, P as PointLight, D as DirectionalLight, e as Vector3, I as InstancedMesh, Q as Quaternion, O as Object3D, f as TextureLoader, g as ImageBitmapLoader, B as BufferAttribute, h as InterleavedBuffer, i as LinearMipmapLinearFilter, N as NearestMipmapLinearFilter, j as LinearMipmapNearestFilter, k as NearestMipmapNearestFilter, l as LinearFilter, m as NearestFilter, n as RepeatWrapping, o as MirroredRepeatWrapping, p as ClampToEdgeWrapping, q as PointsMaterial, r as Material, s as LineBasicMaterial, t as MeshStandardMaterial, u as DoubleSide, v as MeshBasicMaterial, w as PropertyBinding, x as BufferGeometry, y as SkinnedMesh, z as Mesh, A as LineSegments, E as Line$1, H as LineLoop, J as Points, K as PerspectiveCamera, U as MathUtils, W as OrthographicCamera, X as Skeleton, Y as InterpolateDiscrete, Z as InterpolateLinear, _ as AnimationClip, $ as Bone, a0 as InterleavedBufferAttribute, a1 as Texture, a2 as VectorKeyframeTrack, a3 as QuaternionKeyframeTrack, a4 as NumberKeyframeTrack, a5 as FrontSide, a6 as Interpolant, a7 as Box3, a8 as Sphere, a9 as InstancedBufferGeometry, aa as Float32BufferAttribute, ab as InstancedInterleavedBuffer, ac as WireframeGeometry, ad as ShaderMaterial, ae as UniformsUtils, af as UniformsLib, ag as Vector4, ah as Line3, ai as SphereGeometry, aj as _extends, ak as Plane, al as Triangle, am as BackSide, an as Ray$1, ao as jsxRuntimeExports, ap as Matrix3, aq as CoordinationType, ar as Data3DTexture, as as RedFormat, at as FloatType, au as getImageSize, av as Scene } from "./index-B0JyLhTY.js";
+import { G as Group, M as Matrix4, T as TrianglesDrawMode, a as TriangleFanDrawMode, b as TriangleStripDrawMode, R as REVISION, L as Loader, c as LoaderUtils, F as FileLoader, d as MeshPhysicalMaterial, V as Vector2, C as Color, S as SpotLight, P as PointLight, D as DirectionalLight, e as Vector3, I as InstancedMesh, Q as Quaternion, O as Object3D, f as TextureLoader, g as ImageBitmapLoader, B as BufferAttribute, h as InterleavedBuffer, i as LinearMipmapLinearFilter, N as NearestMipmapLinearFilter, j as LinearMipmapNearestFilter, k as NearestMipmapNearestFilter, l as LinearFilter, m as NearestFilter, n as RepeatWrapping, o as MirroredRepeatWrapping, p as ClampToEdgeWrapping, q as PointsMaterial, r as Material, s as LineBasicMaterial, t as MeshStandardMaterial, u as DoubleSide, v as MeshBasicMaterial, w as PropertyBinding, x as BufferGeometry, y as SkinnedMesh, z as Mesh, A as LineSegments, E as Line$1, H as LineLoop, J as Points, K as PerspectiveCamera, U as MathUtils, W as OrthographicCamera, X as Skeleton, Y as InterpolateDiscrete, Z as InterpolateLinear, _ as AnimationClip, $ as Bone, a0 as InterleavedBufferAttribute, a1 as Texture, a2 as VectorKeyframeTrack, a3 as QuaternionKeyframeTrack, a4 as NumberKeyframeTrack, a5 as FrontSide, a6 as Interpolant, a7 as Box3, a8 as Sphere, a9 as InstancedBufferGeometry, aa as Float32BufferAttribute, ab as InstancedInterleavedBuffer, ac as WireframeGeometry, ad as ShaderMaterial, ae as UniformsUtils, af as UniformsLib, ag as Vector4, ah as Line3, ai as SphereGeometry, aj as _extends, ak as Plane, al as Triangle, am as BackSide, an as Ray$1, ao as jsxRuntimeExports, ap as Matrix3, aq as CoordinationType, ar as Data3DTexture, as as RedFormat, at as FloatType, au as getImageSize, av as Scene } from "./index-B-aCUFst.js";
 import * as React from "react";
 import { useRef, useEffect, useState, forwardRef } from "react";
-import { u as useThree, a as useFrame, c as create, e as extend, b as createPortal, O as OrbitControls, C as Canvas } from "./OrbitControls-Bq0h_Ctg.js";
+import { u as useThree, a as useFrame, c as create, e as extend, b as createPortal, O as OrbitControls, C as Canvas } from "./OrbitControls-BpeUSyh9.js";
 const isPromise = (promise) => typeof promise === "object" && typeof promise.then === "function";
 const globalCache = [];
 function shallowEqualArrays(arrA, arrB, equal = (a, b) => a === b) {
@@ -5027,7 +5027,7 @@ const Text = /* @__PURE__ */ React.forwardRef(({
   const {
     Text: TextMeshImpl,
     preloadFont
-  } = suspend(async () => import("./troika-three-text.esm-aenn8tL8.js"), []);
+  } = suspend(async () => import("./troika-three-text.esm-Cf8otk5M.js"), []);
   const invalidate = useThree(({
     invalidate: invalidate2
   }) => invalidate2);

package/dist/{index-eU9RLuKQ.js → index-Do4xvqoi.js}

@@ -1,6 +1,6 @@
-import { aw as log, ax as isEqual, ar as Data3DTexture, as as RedFormat, ay as UnsignedByteType, l as LinearFilter, az as RedIntegerFormat, aA as UnsignedIntType, m as NearestFilter, e as Vector3, V as Vector2, ag as Vector4, ae as UniformsUtils, aq as CoordinationType, aB as WebGLMultipleRenderTargets, aC as RGBAFormat, av as Scene, W as OrthographicCamera, ad as ShaderMaterial, z as Mesh, aD as PlaneGeometry, aE as useEventCallback, ao as jsxRuntimeExports, aF as GLSL3, am as BackSide } from "./index-B0JyLhTY.js";
+import { aw as log, ax as isEqual, ar as Data3DTexture, as as RedFormat, ay as UnsignedByteType, l as LinearFilter, az as RedIntegerFormat, aA as UnsignedIntType, m as NearestFilter, e as Vector3, V as Vector2, ag as Vector4, ae as UniformsUtils, aq as CoordinationType, aB as WebGLMultipleRenderTargets, aC as RGBAFormat, av as Scene, W as OrthographicCamera, ad as ShaderMaterial, z as Mesh, aD as PlaneGeometry, aE as useEventCallback, ao as jsxRuntimeExports, aF as GLSL3, am as BackSide } from "./index-B-aCUFst.js";
 import { useRef, useState, useMemo, useEffect, Suspense } from "react";
-import { u as useThree, a as useFrame, O as OrbitControls, C as Canvas } from "./OrbitControls-Bq0h_Ctg.js";
+import { u as useThree, a as useFrame, O as OrbitControls, C as Canvas } from "./OrbitControls-BpeUSyh9.js";
 const LogLevel = {
   INFO: "info",
   WARN: "warn",

package/dist/index.js

@@ -1,4 +1,4 @@
-import { bR, bP, bN, bQ, bO, bM, bS } from "./index-B0JyLhTY.js";
+import { bR, bP, bN, bQ, bO, bM, bS } from "./index-B-aCUFst.js";
 import { useComplexCoordination, useComplexCoordinationSecondary, useCoordination, useCoordinationScopes, useCoordinationScopesBy, useGridItemSize, useMultiCoordinationScopesNonNull, useMultiCoordinationScopesSecondaryNonNull, usePageModeView } from "@vitessce/vit-s";
 export {
   bR as PluginAsyncFunction,

package/dist/{jpeg-BOKb2qaL.js → jpeg-BZSLq5O3.js}

@@ -1,4 +1,4 @@
-import { aX as BaseDecoder } from "./index-B0JyLhTY.js";
+import { aX as BaseDecoder } from "./index-B-aCUFst.js";
 const dctZigZag = new Int32Array([
   0,
   1,

package/dist/{lerc-CBp5l3Pw.js → lerc-BZk5g5T2.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { aG as getDefaultExportFromCjs, aX as BaseDecoder, aY as LercParameters, aZ as LercAddCompression } from "./index-B0JyLhTY.js";
+import { aG as getDefaultExportFromCjs, aX as BaseDecoder, aY as LercParameters, aZ as LercAddCompression } from "./index-B-aCUFst.js";
 var LercDecode = { exports: {} };
 var hasRequiredLercDecode;
 function requireLercDecode() {

package/dist/{lzw-CkA9e76s.js → lzw-fa9yKTSy.js}

@@ -1,4 +1,4 @@
-import { aX as BaseDecoder } from "./index-B0JyLhTY.js";
+import { aX as BaseDecoder } from "./index-B-aCUFst.js";
 const MIN_BITS = 9;
 const CLEAR_CODE = 256;
 const EOI_CODE = 257;

package/dist/{packbits-DOr_NbG_.js → packbits-8C0e8lDT.js}

@@ -1,4 +1,4 @@
-import { aX as BaseDecoder } from "./index-B0JyLhTY.js";
+import { aX as BaseDecoder } from "./index-B-aCUFst.js";
 class PackbitsDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     const dataView = new DataView(buffer);

package/dist/{raw-BEDGxpo9.js → raw-fm6sEfJs.js}

@@ -1,4 +1,4 @@
-import { aX as BaseDecoder } from "./index-B0JyLhTY.js";
+import { aX as BaseDecoder } from "./index-B-aCUFst.js";
 class RawDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return buffer;

package/dist/{troika-three-text.esm-aenn8tL8.js → troika-three-text.esm-Cf8otk5M.js}

@@ -1,4 +1,4 @@
-import { bH as MeshDistanceMaterial, bI as MeshDepthMaterial, bJ as RGBADepthPacking, ae as UniformsUtils, bK as ShaderChunk, a9 as InstancedBufferGeometry, a8 as Sphere, a7 as Box3, am as BackSide, u as DoubleSide, z as Mesh, a5 as FrontSide, v as MeshBasicMaterial, C as Color, e as Vector3, M as Matrix4, V as Vector2, ap as Matrix3, ag as Vector4, a1 as Texture, l as LinearFilter, aD as PlaneGeometry, x as BufferGeometry, aa as Float32BufferAttribute, bL as InstancedBufferAttribute } from "./index-B0JyLhTY.js";
+import { bH as MeshDistanceMaterial, bI as MeshDepthMaterial, bJ as RGBADepthPacking, ae as UniformsUtils, bK as ShaderChunk, a9 as InstancedBufferGeometry, a8 as Sphere, a7 as Box3, am as BackSide, u as DoubleSide, z as Mesh, a5 as FrontSide, v as MeshBasicMaterial, C as Color, e as Vector3, M as Matrix4, V as Vector2, ap as Matrix3, ag as Vector4, a1 as Texture, l as LinearFilter, aD as PlaneGeometry, x as BufferGeometry, aa as Float32BufferAttribute, bL as InstancedBufferAttribute } from "./index-B-aCUFst.js";
 function workerBootstrap() {
   var modules = /* @__PURE__ */ Object.create(null);
   function registerModule(ref, callback) {

package/dist/{webimage-Ad_VhFBm.js → webimage-CyRSWQVR.js}

@@ -1,4 +1,4 @@
-import { aX as BaseDecoder } from "./index-B0JyLhTY.js";
+import { aX as BaseDecoder } from "./index-B-aCUFst.js";
 class WebImageDecoder extends BaseDecoder {
   constructor() {
     super();

package/dist-tsc/base-plugins.d.ts

@@ -267,14 +267,20 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
         path: z.ZodString;
         tablePath: z.ZodOptional<z.ZodString>;
         coordinateSystem: z.ZodOptional<z.ZodString>;
+        featureIndexColumn: z.ZodOptional<z.ZodString>;
+        mortonCodeColumn: z.ZodOptional<z.ZodString>;
     }, "strip", z.ZodTypeAny, {
         path: string;
         tablePath?: string | undefined;
         coordinateSystem?: string | undefined;
+        featureIndexColumn?: string | undefined;
+        mortonCodeColumn?: string | undefined;
     }, {
         path: string;
         tablePath?: string | undefined;
         coordinateSystem?: string | undefined;
+        featureIndexColumn?: string | undefined;
+        mortonCodeColumn?: string | undefined;
     }>>;
     obsFeatureMatrix: z.ZodOptional<z.ZodObject<{
         path: z.ZodString;
@@ -394,6 +400,8 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
         path: string;
         tablePath?: string | undefined;
         coordinateSystem?: string | undefined;
+        featureIndexColumn?: string | undefined;
+        mortonCodeColumn?: string | undefined;
     } | undefined;
     obsFeatureMatrix?: {
         path: string;
@@ -445,6 +453,8 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
         path: string;
         tablePath?: string | undefined;
         coordinateSystem?: string | undefined;
+        featureIndexColumn?: string | undefined;
+        mortonCodeColumn?: string | undefined;
     } | undefined;
     obsFeatureMatrix?: {
         path: string;
@@ -996,7 +1006,16 @@ export declare const baseCoordinationTypes: (PluginCoordinationType<z.ZodNullabl
 }, {
     path: string[];
     color: number[];
-}>, "many">>> | PluginCoordinationType<z.ZodEnum<["geneSelection", "cellSetSelection", "spatialChannelColor", "spatialLayerColor", "obsLabels"]>> | PluginCoordinationType<z.ZodNullable<z.ZodUnion<[z.ZodEnum<["first", "last", "mean", "sum", "difference"]>, z.ZodNumber]>>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["featureSelection", "featureSetSelection"]>>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["featureFilter", "featureSetFilter"]>>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["log1p", "arcsinh"]>>> | PluginCoordinationType<z.ZodArray<z.ZodNumber, "many">> | PluginCoordinationType<z.ZodNullable<z.ZodEffects<z.ZodUnion<[z.ZodObject<{
+}>, "many">>> | PluginCoordinationType<z.ZodNullable<z.ZodArray<z.ZodObject<{
+    name: z.ZodString;
+    color: z.ZodArray<z.ZodNumber, "many">;
+}, "strip", z.ZodTypeAny, {
+    color: number[];
+    name: string;
+}, {
+    color: number[];
+    name: string;
+}>, "many">>> | PluginCoordinationType<z.ZodEnum<["geneSelection", "cellSetSelection", "spatialChannelColor", "spatialLayerColor", "obsLabels", "random", "randomByFeature"]>> | PluginCoordinationType<z.ZodNullable<z.ZodUnion<[z.ZodEnum<["first", "last", "mean", "sum", "difference"]>, z.ZodNumber]>>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["featureSelection", "featureSetSelection"]>>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["featureFilter", "featureSetFilter", "featureSelection"]>>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["log1p", "arcsinh"]>>> | PluginCoordinationType<z.ZodArray<z.ZodNumber, "many">> | PluginCoordinationType<z.ZodNullable<z.ZodEffects<z.ZodUnion<[z.ZodObject<{
     version: z.ZodLiteral<"0.1.3">;
     tree: z.ZodArray<z.ZodType<{
         name: string;

package/dist-tsc/base-plugins.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"base-plugins.d.ts","sourceRoot":"","sources":["../src/base-plugins.ts"],"names":[],"mappings":"AAWA,OAAO,EACL,cAAc,EACd,mBAAmB,EACnB,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,KAAK,EACV,UAAU,EACV,UAAU,EACX,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,CAAC,EAqDF,MAAM,mBAAmB,CAAC;AAmL3B,eAAO,MAAM,aAAa,kBA8BzB,CAAC;AAEF,eAAO,MAAM,aAAa,wDA2EzB,CAAC;AAEF,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yBA+G3B,CAAJ;gCAEQ,CAAC;;;yBAGQ,CAAC;gCAGD,CAAC;;;;;;;;;;;;;;;;iBAiBoC,CAAC;;;;iBAIpC,CAAC;;;;;;;YAM+B,CAAC;;;YAIhD,CAAD;;;;;;;YAIwI,CAAC;;;YAExG,CAAC;;;;;;;YAKV,CAAC;;;YAGnB,CAAC;;;;;;;;;;;;;;YAkBK,CAAC;;;YAEQ,CAAC;;;;;;;;YAYX,CAAC;;;;YAGS,CAAC;;;;;;;;;;;;;;;;;;;;;;;;yBAQA,CAAC;gCAAsD,CAAC;;;;;;;;iBAGhC,CAAC;;;;YACF,CAAC;;;;YACH,CAAC;;;;YACX,CAAC;;;;;;;YAExB,CAAC;;;;YACU,CAAC;;;;;;;;;;;;;;;;;;;;yBAG4F,CAAC;gCACtE,CAAC;;;;;;;;iBAEsD,CAAC;;;;YACxB,CAAA;;;;YAClC,CAAC;;;;YACG,CAAC;;;;;;;YAEnB,CAAC;;;;YACE,CAAC;;;;;;;;;;;wBAyDutE,CAAC;;;wBAA6E,CAAC;;;;;;;;iBAAwR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;iBAA+X,CAAC;wBAA8C,CAAC;0BAAgD,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;0BAAgD,CAAC;wBAA8C,CAAC;;;;;;;;;;yBAAkZ,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;yBAA8E,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;;;;;iBAAgR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;;;qBAAygB,CAAC;;;;qBAA2J,CAAC;;;;;;qBAAsN,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;qBAA0K,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;;YAAoP,CAAC;;;YAAmE,CAAC;;;;;;;;YAAuR,CAAC;;;;YAAkG,CAAC;;;;;;;;;;;;;;;;;;;;;;wBAAmoB,CAAC;;;;iBAAyG,CAAC;wBAA8C,CAAC;;;;iBAAkG,CAAC;wBAA8C,CAAC;0BAAgD,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;YAAgG,CAAC;;;;YAAmG,CAAC;;;;;;;;;;;;wBAA6R,CAAC;;;;iBAAyG,CAAC;wBAA8C,CAAC;;;;iBAAkG,CAAC;wBAA8C,CAAC;0BAAgD,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;YAAgG,CAAC;;;;YAAmG,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBAljBv8T,CAAC;;;;;qBAGkB,CAAC;qBAA4C,CAAC;;;;;;;;;qBAI/B,CAAC;6BAAoD,CAAC;;sBAClC,CAAC;;;;;qBAQzC,CAAC;qBAEZ,CAAC;;;;;;;;;qBAWD,CAAC;6BAEK,CAAC;;;;;;;;;;;;;kBAuBH,CAAA;mBAGE,CAAC;gBACkB,CAAC;gBAEzB,CAAC;uBAEH,CAAF;iBACU,CAAC;oBACS,CAAC;oBAER,CAAC;qBAEZ,CAAF;;kBAC0B,CAAC;mBAEvB,CAAC;gBACmB,CAAC;gBAGlB,CAAC;uBAEe,CAAC;iBACC,CAAC;oBAIrB,CAAA;oBAEgB,CAAC;qBAET,CAAC;;;;;;gBAMZ,CAAD;sBAA0B,CAAC;;;;;qBAOR,CAAC;qBAGjB,CAAC;;;;;;;;;qBAaoB,CAAC;6BAEd,CAAC;;mBAGF,CAAC;kBACI,CAAC;mBAEL,CAAC;gBAEK,CAAC;gBAEH,CAAC;uBAEV,CAAC;iBACE,CAAC;oBAEC,CAAC;oBAEV,CAAC;qBAEC,CAAC;;;;;;gBAMD,CAAC;sBAA0B,CAAC;;;;;qBAKX,CAAC;qBAA4C,CAAC;;;;;;;;;qBAGtC,CAAC;6BAE/B,CADA;;mBACO,CAAC;kBAAsB,CAAC;mBAAyC,CAAC;gBAAmD,CAAC;gBAAuC,CAAA;uBAC3I,CAAC;iBACZ,CAAC;oBACmB,CAAC;oBAA0C,CAAC;qBAG5D,CAAC;;;;;;;;;gBAEiD,CAAC;sBACjD,CAAA;;;;;qBAOK,CAAC;qBACa,CAAC;;;;;;;;;qBAI1B,CAAC;6BACC,CAAC;;mBACW,CAAC;kBAAsB,CAAC;mBACrB,CAAC;gBACF,CAAC;gBACxB,CAAC;uBAA6C,CAAC;iBAC/B,CAAC;oBAA0C,CAAC;oBACrC,CAAC;qBACR,CAAC;;;;;;;;;;;gBAG8B,CAAC;sBAC3C,CAAC;;;;;qBAG+B,CAAC;qBAClB,CAAC;;;;;;;;;qBAGgC,CAAC;6BACX,CAAC;;mBACW,CAAC;kBACtD,CAAC;mBAAyC,CAAC;gBAC/B,CAAC;gBAAsC,CAAC;uBAC/C,CAAC;iBAAuC,CAAC;oBACvD,CAAC;oBAGQ,CAAA;qBACmB,CAAC;;;;;;;;;;;;;;OA6F5B,CAAC;AAIF,eAAO,MAAM,qBAAqB;;;;;;;;aA9WtB,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cACQ,CAAC;eACW,CAAC;;;;;;;;;;;;;;;;;;;aAqBE,CAAC;cAC1B,CAAC;eAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;aApE/B,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cACQ,CAAC;eACW,CAAC;;;;;;;;;;;;;;;;;;;aAqBE,CAAC;cAC1B,CAAC;eAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kzBAyiB1C,CAAC;AAEF,eAAO,MAAM,kBAAkB,uBAK9B,CAAC"}

package/dist-tsc/base-plugins.js

@@ -253,7 +253,15 @@ export const baseCoordinationTypes = [
         path: obsSetPath,
         color: rgbArray,
     })).nullable()),
-    new PluginCoordinationType(CoordinationType.OBS_COLOR_ENCODING, 'cellSetSelection', z.enum(['geneSelection', 'cellSetSelection', 'spatialChannelColor', 'spatialLayerColor', 'obsLabels'])),
+    new PluginCoordinationType(CoordinationType.FEATURE_COLOR, null, z.array(z.object({
+        name: z.string(),
+        color: rgbArray,
+    })).nullable()),
+    new PluginCoordinationType(CoordinationType.OBS_COLOR_ENCODING, 'cellSetSelection', z.enum([
+        'geneSelection', 'cellSetSelection', 'spatialChannelColor', 'spatialLayerColor', 'obsLabels',
+        // For point coloring.
+        'random', 'randomByFeature',
+    ])),
     new PluginCoordinationType(CoordinationType.FEATURE_FILTER, null, z.array(z.string()).nullable()),
     new PluginCoordinationType(CoordinationType.FEATURE_HIGHLIGHT, null, z.string().nullable()),
     new PluginCoordinationType(CoordinationType.FEATURE_SELECTION, null, z.array(z.string()).nullable()),
@@ -267,7 +275,7 @@ export const baseCoordinationTypes = [
     new PluginCoordinationType(CoordinationType.FEATURE_SET_SELECTION, null, z.array(obsSetPath).nullable()),
     new PluginCoordinationType(CoordinationType.FEATURE_SELECTION_MODE, null, z.enum(['featureSelection', 'featureSetSelection']).nullable()),
     new PluginCoordinationType(CoordinationType.FEATURE_SET_FILTER, null, z.array(obsSetPath).nullable()),
-    new PluginCoordinationType(CoordinationType.FEATURE_FILTER_MODE, null, z.enum(['featureFilter', 'featureSetFilter']).nullable()),
+    new PluginCoordinationType(CoordinationType.FEATURE_FILTER_MODE, null, z.enum(['featureFilter', 'featureSetFilter', 'featureSelection']).nullable()),
     new PluginCoordinationType(CoordinationType.FEATURE_VALUE_TRANSFORM, null, z.enum(['log1p', 'arcsinh']).nullable()),
     new PluginCoordinationType(CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT, 1, z.number()),
     new PluginCoordinationType(CoordinationType.FEATURE_VALUE_POSITIVITY_THRESHOLD, 0, z.number()),

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/all",
-  "version": "3.8.13",
+  "version": "3.9.1",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -17,38 +17,38 @@
   ],
   "dependencies": {
     "zod": "^3.21.4",
-    "@vitessce/styles": "3.8.13",
-    "@vitessce/constants-internal": "3.8.13",
-    "@vitessce/abstract": "3.8.13",
-    "@vitessce/error": "3.8.13",
-    "@vitessce/csv": "3.8.13",
-    "@vitessce/description": "3.8.13",
-    "@vitessce/genomic-profiles": "3.8.13",
-    "@vitessce/heatmap": "3.8.13",
-    "@vitessce/feature-list": "3.8.13",
-    "@vitessce/glb": "3.8.13",
-    "@vitessce/json": "3.8.13",
-    "@vitessce/layer-controller": "3.8.13",
-    "@vitessce/layer-controller-beta": "3.8.13",
-    "@vitessce/obs-sets-manager": "3.8.13",
-    "@vitessce/link-controller": "3.8.13",
-    "@vitessce/plugins": "3.8.13",
-    "@vitessce/scatterplot-embedding": "3.8.13",
-    "@vitessce/ome-tiff": "3.8.13",
-    "@vitessce/scatterplot-gating": "3.8.13",
-    "@vitessce/spatial": "3.8.13",
-    "@vitessce/schemas": "3.8.13",
-    "@vitessce/status": "3.8.13",
-    "@vitessce/spatial-beta": "3.8.13",
-    "@vitessce/vit-s": "3.8.13",
-    "@vitessce/zarr": "3.8.13",
-    "@vitessce/statistical-plots": "3.8.13",
-    "@vitessce/globals": "3.8.13",
-    "@vitessce/spatial-three": "3.8.13",
-    "@vitessce/spatial-zarr": "3.8.13",
-    "@vitessce/spatial-accelerated": "3.8.13",
-    "@vitessce/biomarker-select": "3.8.13",
-    "@vitessce/neuroglancer": "3.8.13"
+    "@vitessce/styles": "3.9.1",
+    "@vitessce/abstract": "3.9.1",
+    "@vitessce/constants-internal": "3.9.1",
+    "@vitessce/error": "3.9.1",
+    "@vitessce/description": "3.9.1",
+    "@vitessce/feature-list": "3.9.1",
+    "@vitessce/genomic-profiles": "3.9.1",
+    "@vitessce/csv": "3.9.1",
+    "@vitessce/heatmap": "3.9.1",
+    "@vitessce/json": "3.9.1",
+    "@vitessce/layer-controller": "3.9.1",
+    "@vitessce/link-controller": "3.9.1",
+    "@vitessce/glb": "3.9.1",
+    "@vitessce/obs-sets-manager": "3.9.1",
+    "@vitessce/ome-tiff": "3.9.1",
+    "@vitessce/layer-controller-beta": "3.9.1",
+    "@vitessce/plugins": "3.9.1",
+    "@vitessce/scatterplot-gating": "3.9.1",
+    "@vitessce/scatterplot-embedding": "3.9.1",
+    "@vitessce/schemas": "3.9.1",
+    "@vitessce/statistical-plots": "3.9.1",
+    "@vitessce/spatial": "3.9.1",
+    "@vitessce/spatial-beta": "3.9.1",
+    "@vitessce/vit-s": "3.9.1",
+    "@vitessce/status": "3.9.1",
+    "@vitessce/zarr": "3.9.1",
+    "@vitessce/spatial-zarr": "3.9.1",
+    "@vitessce/globals": "3.9.1",
+    "@vitessce/spatial-three": "3.9.1",
+    "@vitessce/spatial-accelerated": "3.9.1",
+    "@vitessce/biomarker-select": "3.9.1",
+    "@vitessce/neuroglancer": "3.9.1"
   },
   "devDependencies": {
     "@types/react": "^18.0.28",

package/src/base-plugins.ts

@@ -480,10 +480,22 @@ export const baseCoordinationTypes = [
       color: rgbArray,
     })).nullable(),
   ),
+  new PluginCoordinationType(
+    CoordinationType.FEATURE_COLOR,
+    null,
+    z.array(z.object({
+      name: z.string(),
+      color: rgbArray,
+    })).nullable(),
+  ),
   new PluginCoordinationType(
     CoordinationType.OBS_COLOR_ENCODING,
     'cellSetSelection',
-    z.enum(['geneSelection', 'cellSetSelection', 'spatialChannelColor', 'spatialLayerColor', 'obsLabels']),
+    z.enum([
+      'geneSelection', 'cellSetSelection', 'spatialChannelColor', 'spatialLayerColor', 'obsLabels',
+      // For point coloring.
+      'random', 'randomByFeature',
+    ]),
   ),
   new PluginCoordinationType(CoordinationType.FEATURE_FILTER, null, z.array(z.string()).nullable()),
   new PluginCoordinationType(CoordinationType.FEATURE_HIGHLIGHT, null, z.string().nullable()),
@@ -510,7 +522,7 @@ export const baseCoordinationTypes = [
     null,
     z.array(obsSetPath).nullable(),
   ),
-  new PluginCoordinationType(CoordinationType.FEATURE_FILTER_MODE, null, z.enum(['featureFilter', 'featureSetFilter']).nullable()),
+  new PluginCoordinationType(CoordinationType.FEATURE_FILTER_MODE, null, z.enum(['featureFilter', 'featureSetFilter', 'featureSelection']).nullable()),
   new PluginCoordinationType(
     CoordinationType.FEATURE_VALUE_TRANSFORM,
     null,