@vitessce/all 3.6.9 → 3.6.11

package/dist/{ReactNeuroglancer-BZs3FSdZ.js → ReactNeuroglancer-ByxOvkt_.js}

@@ -1,4 +1,4 @@
-import { g as getDefaultExportFromCjs, aV as requireAssign, aW as require_export, aX as require_core, aY as require_fails, aZ as require_toObject, a_ as require_objectKeys, a$ as require_cof, b0 as require_wks, b1 as require_iterators, b2 as requireWeb_dom_iterable, b3 as requireEs6_string_iterator, b4 as require_anObject, b5 as require_hide, b6 as require_ctx, b7 as require_toLength, b8 as require_global, b9 as require_objectDp, ba as require_descriptors, bb as require_isObject, bc as require_objectCreate, bd as require_iterDefine, be as require_iterStep, bf as require_meta, bg as require_isArray, bh as require_iobject, bi as require_setToStringTag, bj as require_aFunction, bk as requireIterator, bl as require_propertyDesc, aS as commonjsGlobal, bm as requireEs6_symbol, bn as requireDefineProperty, bo as require_toIobject, bp as require_objectGopd, bq as require_html, br as require_domCreate, bs as require_library, bt as requireSymbol, bu as require_objectPie, bv as require_has, bw as require_redefine, bx as require_objectAssign, by as getAugmentedNamespace, bz as requirePropTypes, aI as jsxRuntimeExports } from "./index-czE8px9n.js";
+import { g as getDefaultExportFromCjs, aV as requireAssign, aW as require_export, aX as require_core, aY as require_fails, aZ as require_toObject, a_ as require_objectKeys, a$ as require_cof, b0 as require_wks, b1 as require_iterators, b2 as requireWeb_dom_iterable, b3 as requireEs6_string_iterator, b4 as require_anObject, b5 as require_hide, b6 as require_ctx, b7 as require_toLength, b8 as require_global, b9 as require_objectDp, ba as require_descriptors, bb as require_isObject, bc as require_objectCreate, bd as require_iterDefine, be as require_iterStep, bf as require_meta, bg as require_isArray, bh as require_iobject, bi as require_setToStringTag, bj as require_aFunction, bk as requireIterator, bl as require_propertyDesc, aS as commonjsGlobal, bm as requireEs6_symbol, bn as requireDefineProperty, bo as require_toIobject, bp as require_objectGopd, bq as require_html, br as require_domCreate, bs as require_library, bt as requireSymbol, bu as require_objectPie, bv as require_has, bw as require_redefine, bx as require_objectAssign, by as getAugmentedNamespace, bz as requirePropTypes, aI as jsxRuntimeExports } from "./index-Dr34Nsn3.js";
 import React__default from "react";
 var lib = {};
 var assignExports = requireAssign();

package/dist/{deflate-4_5LP3c7.js → deflate-DlNs33aU.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { aP as BaseDecoder } from "./index-czE8px9n.js";
+import { aP as BaseDecoder } from "./index-Dr34Nsn3.js";
 class DeflateDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return inflate_1(new Uint8Array(buffer)).buffer;

package/dist/{higlass-BQOSGkoX.js → higlass-cF4tD6Th.js}

@@ -1,7 +1,7 @@
 import * as React$7 from "react";
 import React__default, { isValidElement, PureComponent, Component, createElement, createContext, createRef } from "react";
 import ReactDOM__default, { findDOMNode as findDOMNode$1 } from "react-dom";
-import { aS as commonjsGlobal$1, aT as requireObjectAssign, g as getDefaultExportFromCjs$1, aU as earcut } from "./index-czE8px9n.js";
+import { aS as commonjsGlobal$1, aT as requireObjectAssign, g as getDefaultExportFromCjs$1, aU as earcut } from "./index-Dr34Nsn3.js";
 var promise = {};
 var hasRequiredPromise;
 function requirePromise() {

package/dist/{index-czE8px9n.js → index-Dr34Nsn3.js}

@@ -207897,7 +207897,8 @@ const PIXELATED_TEXTURE_PARAMETERS = {
 const GLSL_COLORMAPS = [
   "plasma",
   "viridis",
-  "jet"
+  "jet",
+  "greys"
 ];
 const GLSL_COLORMAP_DEFAULT = "plasma";
 const COLORMAP_SHADER_PLACEHOLDER = "COLORMAP_FUNC";
@@ -209668,22 +209669,22 @@ async function getDecoder(fileDirectory) {
   const Decoder = await importFn();
   return new Decoder(fileDirectory);
 }
-addDecoder([void 0, 1], () => import("./raw-lwr9XUzN.js").then((m2) => m2.default));
-addDecoder(5, () => import("./lzw-DtyOGnJ3.js").then((m2) => m2.default));
+addDecoder([void 0, 1], () => import("./raw-BloA4686.js").then((m2) => m2.default));
+addDecoder(5, () => import("./lzw-DhNvTBt-.js").then((m2) => m2.default));
 addDecoder(6, () => {
   throw new Error("old style JPEG compression is not supported.");
 });
-addDecoder(7, () => import("./jpeg-HoY3tQW-.js").then((m2) => m2.default));
-addDecoder([8, 32946], () => import("./deflate-4_5LP3c7.js").then((m2) => m2.default));
-addDecoder(32773, () => import("./packbits-BomSh4rs.js").then((m2) => m2.default));
+addDecoder(7, () => import("./jpeg-BchP2GI5.js").then((m2) => m2.default));
+addDecoder([8, 32946], () => import("./deflate-DlNs33aU.js").then((m2) => m2.default));
+addDecoder(32773, () => import("./packbits-C6We0BcA.js").then((m2) => m2.default));
 addDecoder(
   34887,
-  () => import("./lerc-DoPOl6hh.js").then(async (m2) => {
+  () => import("./lerc-Yewj5Mkt.js").then(async (m2) => {
     await m2.zstd.init();
     return m2;
   }).then((m2) => m2.default)
 );
-addDecoder(50001, () => import("./webimage-cJdBwvlo.js").then((m2) => m2.default));
+addDecoder(50001, () => import("./webimage-DyPRDNMg.js").then((m2) => m2.default));
 function copyNewSize(array2, width2, height2, samplesPerPixel = 1) {
   return new (Object.getPrototypeOf(array2)).constructor(width2 * height2 * samplesPerPixel);
 }
@@ -231817,6 +231818,9 @@ function Legend(props) {
       featureSelectionLabelRawStr = featureSelectionLabelRaw == null ? void 0 : featureSelectionLabelRaw[0];
     } else if (featureAggregationStrategy === "last") {
       featureSelectionLabelRawStr = featureSelectionLabelRaw == null ? void 0 : featureSelectionLabelRaw.at(-1);
+    } else if (typeof featureAggregationStrategy === "number") {
+      const i2 = featureAggregationStrategy;
+      featureSelectionLabelRawStr = featureSelectionLabelRaw == null ? void 0 : featureSelectionLabelRaw[i2];
     } else if (featureAggregationStrategy === "sum") {
       featureSelectionLabelRawStr = "Sum of features";
     } else if (featureAggregationStrategy === "mean") {
@@ -232231,7 +232235,7 @@ function EmbeddingScatterplotSubscriber(props) {
     return [1, 10, 100];
   }, [contourPercentiles, sortedWeights]);
   const circleInfo = useMemo$1(() => {
-    if (!originalViewState || !width2 || !height2) {
+    if (!originalViewState || !width2 || !height2 || !xRange || !yRange) {
       return null;
     }
     const center2 = [
@@ -232242,7 +232246,8 @@ function EmbeddingScatterplotSubscriber(props) {
     if (!(typeof scaleFactor === "number" && typeof center2[0] === "number" && typeof center2[1] === "number") || Number.isNaN(scaleFactor)) {
       return null;
     }
-    const radius2 = Math.min(width2, height2) / 2 / scaleFactor;
+    const size2 = Math.max(xRange, yRange);
+    const radius2 = size2 * Math.sqrt(2) / 2 * 0.8;
     const numPoints = 96;
     const options = { steps: numPoints, units: "degrees" };
     const circlePolygon = circle$5(center2, radius2, options);
@@ -232252,7 +232257,7 @@ function EmbeddingScatterplotSubscriber(props) {
       polygon: circlePolygon,
       steps: numPoints
     };
-  }, [originalViewState, width2, height2]);
+  }, [originalViewState, width2, height2, xRange, yRange]);
   const [alignedEmbeddingIndex, alignedEmbeddingData] = useMemo$1(() => {
     if ((obsEmbedding == null ? void 0 : obsEmbedding.data) && obsEmbeddingIndex && matrixObsIndex) {
       const matrixIndexMap = new Map(matrixObsIndex.map((key2, i2) => [key2, i2]));
@@ -253488,7 +253493,7 @@ class ErrorBoundary extends React__default.Component {
   }
 }
 const LazySpatialThree = React__default.lazy(async () => {
-  const { SpatialWrapper: SpatialWrapper2 } = await import("./index-De563thb.js");
+  const { SpatialWrapper: SpatialWrapper2 } = await import("./index-xo9xcZLg.js");
   return { default: SpatialWrapper2 };
 });
 const SpatialThreeAdapter = React__default.forwardRef((props, ref2) => jsxRuntimeExports.jsx("div", { ref: ref2, style: { width: "100%", height: "100%" }, children: jsxRuntimeExports.jsx(ErrorBoundary, { children: jsxRuntimeExports.jsx(Suspense, { fallback: jsxRuntimeExports.jsx("div", { children: "Loading..." }), children: jsxRuntimeExports.jsx(LazySpatialThree, { ...props }) }) }) }));
@@ -265329,7 +265334,7 @@ function HiglassGlobalStyles(props) {
 }
 register({ dataFetcher: ZarrMultivecDataFetcher_default, config: ZarrMultivecDataFetcher_default.config }, { pluginType: "dataFetcher" });
 const LazyHiGlassComponent = React__default.lazy(async () => {
-  const { HiGlassComponent } = await import("./higlass-BQOSGkoX.js");
+  const { HiGlassComponent } = await import("./higlass-cF4tD6Th.js");
   return { default: HiGlassComponent };
 });
 const HG_SIZE = 800;
@@ -268273,7 +268278,7 @@ function NeuroglancerGlobalStyles(props) {
   const { classes: classes2 } = props;
   return jsxRuntimeExports.jsxs(jsxRuntimeExports.Fragment, { children: [jsxRuntimeExports.jsx(GlobalStyles$3, { styles: globalNeuroglancerCss }), jsxRuntimeExports.jsx(ScopedGlobalStyles, { styles: globalNeuroglancerStyles, parentClassName: classes2.neuroglancerWrapper })] });
 }
-const LazyReactNeuroglancer = React__default.lazy(() => import("./ReactNeuroglancer-BZs3FSdZ.js"));
+const LazyReactNeuroglancer = React__default.lazy(() => import("./ReactNeuroglancer-ByxOvkt_.js"));
 function createWorker() {
   return new WorkerFactory();
 }
@@ -321761,26 +321766,7 @@ function ExpressionHistogramSubscriber(props) {
   return jsxRuntimeExports.jsx(TitleInfo, { title: `Histogram${firstGeneSelected ? ` (${firstGeneSelected})` : ""}`, closeButtonVisible, downloadButtonVisible, removeGridComponent, urls: urls2, theme, isReady, helpText, errors, children: jsxRuntimeExports.jsx("div", { ref: containerRef, className: classes2.vegaContainer, children: jsxRuntimeExports.jsx(ExpressionHistogram, { geneSelection, obsType, featureType, featureValueType, onSelect, data: data2, theme, width: width2, height: height2 }) }) });
 }
 function DotPlot(props) {
-  const {
-    isStratified,
-    transpose: transpose2,
-    data: rawData,
-    theme,
-    width: width2,
-    height: height2,
-    marginRight,
-    marginBottom,
-    obsType,
-    sampleType,
-    keyLength = 36,
-    featureType,
-    featureValueType,
-    featureValueTransformName,
-    // TODO: re-enable featureValueColormap coordination
-    // featureValueColormap,
-    obsSetSelection,
-    obsSetColor
-  } = props;
+  const { isStratified, transpose: transpose2, data: rawData, theme, width: width2, height: height2, marginRight, marginBottom, obsType, sampleType, keyLength = 36, featureType, featureValueType, featureValueTransformName, featureValueColormap, obsSetSelection, obsSetColor, onDotSelect } = props;
   const vegaContainerRef = useRef();
   const data2 = rawData.map((d) => ({
     ...d,
@@ -321818,6 +321804,26 @@ function DotPlot(props) {
       // Reference: https://vega.github.io/vega-lite/docs/mark.html
       opacity: 1
     },
+    params: [
+      {
+        name: "dot_select",
+        select: {
+          type: "point",
+          on: "click[event.shiftKey === false]",
+          fields: ["feature"],
+          empty: "none"
+        }
+      },
+      {
+        name: "shift_dot_select",
+        select: {
+          type: "point",
+          on: "click[event.shiftKey]",
+          fields: ["feature"],
+          empty: "none"
+        }
+      }
+    ],
     encoding: {
       [transpose2 ? "y" : "x"]: {
         field: "keyFeature",
@@ -321839,8 +321845,7 @@ function DotPlot(props) {
         type: "quantitative",
         title: meanTransform,
         scale: {
-          // scheme: featureValueColormap,
-          scheme: "greys"
+          scheme: featureValueColormap
         },
         legend: {
           direction: "horizontal",
@@ -321882,6 +321887,14 @@ function DotPlot(props) {
       } : {}
     }
   };
+  const handleSignal = (name2, value2) => {
+    if (name2 === "dot_select") {
+      onDotSelect(value2.feature);
+    } else if (name2 === "shift_dot_select") {
+      onDotSelect(value2.feature, true);
+    }
+  };
+  const signalListeners = { dot_select: handleSignal, shift_dot_select: handleSignal };
   const getTooltipText = useCallback((item) => ({
     [`${capitalize$3(featureType)}`]: item.datum.feature,
     [`${capitalize$3(obsType)} Set`]: item.datum.group,
@@ -321906,7 +321919,7 @@ function DotPlot(props) {
   useEffect(() => {
     setVegaRenderIncrement((prev2) => prev2 + 1);
   }, [rawData]);
-  return jsxRuntimeExports.jsx("div", { ref: vegaContainerRef, children: jsxRuntimeExports.jsx(VegaPlot, { data: data2, spec, onNewView, getTooltipText, renderer: "svg" }) });
+  return jsxRuntimeExports.jsx("div", { ref: vegaContainerRef, children: jsxRuntimeExports.jsx(VegaPlot, { data: data2, spec, onNewView, signalListeners, getTooltipText, renderer: "svg" }) });
 }
 function useExpressionSummaries(sampleEdges, sampleSets, sampleSetSelection, expressionData, obsIndex, cellSets, additionalCellSets, geneSelection, cellSetSelection, cellSetColor, featureValueTransform, featureValueTransformCoefficient, posThreshold, featureLabelsMap) {
   const mergedCellSets = useMemo$1(() => mergeObsSets(cellSets, additionalCellSets), [cellSets, additionalCellSets]);
@@ -321962,7 +321975,24 @@ function DotPlotSubscriber(props) {
   const { coordinationScopes, removeGridComponent, theme, title: title2 = "Dot Plot", transpose: transpose2 = true, helpText = ViewHelpMapping.DOT_PLOT } = props;
   const { classes: classes2 } = useStyles$3();
   const loaders = useLoaders();
-  const [{ dataset, obsType, featureType, featureValueType, featureSelection: geneSelection, featureValueTransform, featureValueTransformCoefficient, featureValuePositivityThreshold: posThreshold, featureValueColormap, obsSetSelection: cellSetSelection, obsSetColor: cellSetColor, additionalObsSets: additionalCellSets, sampleType, sampleSetSelection }, { setFeatureValueTransform, setFeatureValueTransformCoefficient, setFeatureValuePositivityThreshold: setPosThreshold, setFeatureValueColormap }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.DOT_PLOT], coordinationScopes);
+  const [{
+    dataset,
+    obsType,
+    featureType,
+    featureValueType,
+    featureSelection: geneSelection,
+    featureValueTransform,
+    featureValueTransformCoefficient,
+    featureValuePositivityThreshold: posThreshold,
+    featureValueColormap,
+    obsSetSelection: cellSetSelection,
+    obsSetColor: cellSetColor,
+    additionalObsSets: additionalCellSets,
+    sampleType,
+    sampleSetSelection,
+    // eslint-disable-next-line no-unused-vars
+    featureAggregationStrategy
+  }, { setFeatureValueTransform, setFeatureValueTransformCoefficient, setFeatureValuePositivityThreshold: setPosThreshold, setFeatureValueColormap, setFeatureAggregationStrategy }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.DOT_PLOT], coordinationScopes);
   const [width2, height2, containerRef] = useGridItemSize();
   const transformOptions = VALUE_TRANSFORM_OPTIONS;
   const isStratified = Array.isArray(sampleSetSelection) && sampleSetSelection.length > 1;
@@ -322003,7 +322033,13 @@ function DotPlotSubscriber(props) {
   ]);
   const [resultArr, meanExpressionMax] = useExpressionSummaries(sampleEdges, sampleSets, sampleSetSelection, expressionData, obsIndex, cellSets, additionalCellSets, geneSelection, cellSetSelection, cellSetColor, featureValueTransform, featureValueTransformCoefficient, posThreshold, featureLabelsMap);
   const selectedTransformName = (_a3 = transformOptions.find((o2) => o2.value === featureValueTransform)) == null ? void 0 : _a3.name;
-  return jsxRuntimeExports.jsx(TitleInfo, { title: title2, removeGridComponent, urls: urls2, theme, isReady, helpText, errors, options: jsxRuntimeExports.jsx(CellSetExpressionPlotOptions, { featureValueTransform, setFeatureValueTransform, featureValueTransformCoefficient, setFeatureValueTransformCoefficient, transformOptions, featureValuePositivityThreshold: posThreshold, setFeatureValuePositivityThreshold: setPosThreshold, featureValueColormap, setFeatureValueColormap }), children: jsxRuntimeExports.jsx("div", { ref: containerRef, className: classes2.vegaContainer, children: resultArr ? jsxRuntimeExports.jsx(DotPlot, { isStratified, transpose: transpose2, domainMax: meanExpressionMax, data: resultArr, theme, width: width2, height: height2, obsType, sampleType, featureType, featureValueType, featureValueTransformName: selectedTransformName, featureValueColormap, obsSetSelection: cellSetSelection, obsSetColor: cellSetColor }) : jsxRuntimeExports.jsxs("span", { children: ["Select at least one ", featureType, "."] }) }) });
+  const onDotSelect = useCallback((featureName, isShiftDown = false) => {
+    const featureI = geneSelection.indexOf(featureName == null ? void 0 : featureName[0]);
+    if (featureI >= 0) {
+      setFeatureAggregationStrategy(featureI);
+    }
+  }, [setFeatureAggregationStrategy, geneSelection]);
+  return jsxRuntimeExports.jsx(TitleInfo, { title: title2, removeGridComponent, urls: urls2, theme, isReady, helpText, errors, options: jsxRuntimeExports.jsx(CellSetExpressionPlotOptions, { featureValueTransform, setFeatureValueTransform, featureValueTransformCoefficient, setFeatureValueTransformCoefficient, transformOptions, featureValuePositivityThreshold: posThreshold, setFeatureValuePositivityThreshold: setPosThreshold, featureValueColormap, setFeatureValueColormap }), children: jsxRuntimeExports.jsx("div", { ref: containerRef, className: classes2.vegaContainer, children: resultArr ? jsxRuntimeExports.jsx(DotPlot, { isStratified, transpose: transpose2, domainMax: meanExpressionMax, data: resultArr, theme, width: width2, height: height2, obsType, sampleType, featureType, featureValueType, featureValueTransformName: selectedTransformName, featureValueColormap, obsSetSelection: cellSetSelection, obsSetColor: cellSetColor, onDotSelect }) : jsxRuntimeExports.jsxs("span", { children: ["Select at least one ", featureType, "."] }) }) });
 }
 const scaleBand = scale$6("band");
 const OBS_KEY = "obsId";
@@ -326349,9 +326385,10 @@ class SpatialDataObsSpotsLoader extends AbstractTwoStepLoader {
     }
     const zattrs = await this.dataSource.loadSpatialDataElementAttrs(path2);
     const coordinateTransformationsFromFile = ((zattrs == null ? void 0 : zattrs.coordinateTransformations) || DEFAULT_COORDINATE_TRANSFORMATIONS$1).filter(({ input: { name: inputName }, output: { name: outputName } }) => inputName === "xy" && outputName === coordinateSystem);
-    const axes = (zattrs == null ? void 0 : zattrs.axes) || DEFAULT_AXES$1;
+    const axes = (zattrs == null ? void 0 : zattrs.axes) ?? DEFAULT_AXES$1;
+    const normAxes = normalizeAxes(axes);
     const normCoordinateTransformationsFromFile = normalizeCoordinateTransformations(coordinateTransformationsFromFile, null);
-    const transformMatrixFromFile = coordinateTransformationsToMatrix(normCoordinateTransformationsFromFile, axes);
+    const transformMatrixFromFile = coordinateTransformationsToMatrix(normCoordinateTransformationsFromFile, normAxes);
     this.modelMatrix = transformMatrixFromFile;
     return this.modelMatrix;
   }
@@ -342163,7 +342200,11 @@ function toFloat32Array(input) {
   if (input instanceof Float64Array) {
     return new Float32Array(input);
   }
-  throw new TypeError("Input must be Float32Array, Float64Array, or BigInt64Array");
+  if (input instanceof Array) {
+    return new Float32Array(input);
+  }
+  log$b.warn("toFloat32Array expected Float32Array, Float64Array, BigInt64Array, or Array input");
+  return new Float32Array(input);
 }
 class SpatialDataShapesSource extends SpatialDataTableSource {
   /**

package/dist/{index-De563thb.js → index-xo9xcZLg.js}

@@ -1,4 +1,4 @@
-import { g as getDefaultExportFromCjs, R as Raycaster, O as OrthographicCamera, P as PerspectiveCamera, S as Scene, a as PCFSoftShadowMap, V as VSMShadowMap, b as PCFShadowMap, B as BasicShadowMap, N as NoToneMapping, A as ACESFilmicToneMapping, c as Vector3, d as Vector2, C as Clock, W as WebGLRenderer, e as Camera, f as BufferGeometry, M as Material, L as Layers, T as Texture, h as RGBAFormat, U as UnsignedByteType, i as Color, _ as _extends, j as THREE, G as Group, k as Matrix4, l as TrianglesDrawMode, m as TriangleFanDrawMode, n as TriangleStripDrawMode, o as REVISION, E as EventDispatcher, p as MOUSE, q as TOUCH, r as Spherical, Q as Quaternion, s as Ray$1, t as Plane, u as Loader, v as LoaderUtils, F as FileLoader, w as MeshPhysicalMaterial, x as SpotLight, y as PointLight, D as DirectionalLight, I as InstancedMesh, z as Object3D, H as TextureLoader, J as ImageBitmapLoader, K as BufferAttribute, X as InterleavedBuffer, Y as LinearMipmapLinearFilter, Z as NearestMipmapLinearFilter, $ as LinearMipmapNearestFilter, a0 as NearestMipmapNearestFilter, a1 as LinearFilter, a2 as NearestFilter, a3 as RepeatWrapping, a4 as MirroredRepeatWrapping, a5 as ClampToEdgeWrapping, a6 as PointsMaterial, a7 as LineBasicMaterial, a8 as MeshStandardMaterial, a9 as DoubleSide, aa as MeshBasicMaterial, ab as PropertyBinding, ac as SkinnedMesh, ad as Mesh, ae as LineSegments, af as Line$1, ag as LineLoop, ah as Points, ai as MathUtils, aj as Skeleton, ak as InterpolateDiscrete, al as InterpolateLinear, am as AnimationClip, an as Bone, ao as InterleavedBufferAttribute, ap as VectorKeyframeTrack, aq as QuaternionKeyframeTrack, ar as NumberKeyframeTrack, as as FrontSide, at as Interpolant, au as Box3, av as Sphere, aw as InstancedBufferGeometry, ax as Float32BufferAttribute, ay as InstancedInterleavedBuffer, az as WireframeGeometry, aA as ShaderMaterial, aB as UniformsUtils, aC as UniformsLib, aD as Vector4, aE as Line3, aF as SphereGeometry, aG as Triangle, aH as BackSide, aI as jsxRuntimeExports, aJ as Matrix3, aK as CoordinationType, aL as Data3DTexture, aM as RedFormat, aN as FloatType, aO as getImageSize } from "./index-czE8px9n.js";
+import { g as getDefaultExportFromCjs, R as Raycaster, O as OrthographicCamera, P as PerspectiveCamera, S as Scene, a as PCFSoftShadowMap, V as VSMShadowMap, b as PCFShadowMap, B as BasicShadowMap, N as NoToneMapping, A as ACESFilmicToneMapping, c as Vector3, d as Vector2, C as Clock, W as WebGLRenderer, e as Camera, f as BufferGeometry, M as Material, L as Layers, T as Texture, h as RGBAFormat, U as UnsignedByteType, i as Color, _ as _extends, j as THREE, G as Group, k as Matrix4, l as TrianglesDrawMode, m as TriangleFanDrawMode, n as TriangleStripDrawMode, o as REVISION, E as EventDispatcher, p as MOUSE, q as TOUCH, r as Spherical, Q as Quaternion, s as Ray$1, t as Plane, u as Loader, v as LoaderUtils, F as FileLoader, w as MeshPhysicalMaterial, x as SpotLight, y as PointLight, D as DirectionalLight, I as InstancedMesh, z as Object3D, H as TextureLoader, J as ImageBitmapLoader, K as BufferAttribute, X as InterleavedBuffer, Y as LinearMipmapLinearFilter, Z as NearestMipmapLinearFilter, $ as LinearMipmapNearestFilter, a0 as NearestMipmapNearestFilter, a1 as LinearFilter, a2 as NearestFilter, a3 as RepeatWrapping, a4 as MirroredRepeatWrapping, a5 as ClampToEdgeWrapping, a6 as PointsMaterial, a7 as LineBasicMaterial, a8 as MeshStandardMaterial, a9 as DoubleSide, aa as MeshBasicMaterial, ab as PropertyBinding, ac as SkinnedMesh, ad as Mesh, ae as LineSegments, af as Line$1, ag as LineLoop, ah as Points, ai as MathUtils, aj as Skeleton, ak as InterpolateDiscrete, al as InterpolateLinear, am as AnimationClip, an as Bone, ao as InterleavedBufferAttribute, ap as VectorKeyframeTrack, aq as QuaternionKeyframeTrack, ar as NumberKeyframeTrack, as as FrontSide, at as Interpolant, au as Box3, av as Sphere, aw as InstancedBufferGeometry, ax as Float32BufferAttribute, ay as InstancedInterleavedBuffer, az as WireframeGeometry, aA as ShaderMaterial, aB as UniformsUtils, aC as UniformsLib, aD as Vector4, aE as Line3, aF as SphereGeometry, aG as Triangle, aH as BackSide, aI as jsxRuntimeExports, aJ as Matrix3, aK as CoordinationType, aL as Data3DTexture, aM as RedFormat, aN as FloatType, aO as getImageSize } from "./index-Dr34Nsn3.js";
 import * as React from "react";
 import React__default, { useReducer, useRef, useEffect, useLayoutEffect, useDebugValue, useState, useMemo, forwardRef } from "react";
 var constants = { exports: {} };
@@ -23637,7 +23637,7 @@ const Text = /* @__PURE__ */ React.forwardRef(({
   const {
     Text: TextMeshImpl,
     preloadFont
-  } = suspend(async () => import("./troika-three-text.esm-DXvEg9HL.js"), []);
+  } = suspend(async () => import("./troika-three-text.esm-C4mcmvqE.js"), []);
   const invalidate2 = useThree(({
     invalidate: invalidate3
   }) => invalidate3);

package/dist/index.js

@@ -1,4 +1,4 @@
-import { bL, bJ, bH, bK, bI, bG, bM } from "./index-czE8px9n.js";
+import { bL, bJ, bH, bK, bI, bG, bM } from "./index-Dr34Nsn3.js";
 import { useComplexCoordination, useComplexCoordinationSecondary, useCoordination, useCoordinationScopes, useCoordinationScopesBy, useGridItemSize, useMultiCoordinationScopesNonNull, useMultiCoordinationScopesSecondaryNonNull, usePageModeView } from "@vitessce/vit-s";
 export {
   bL as PluginAsyncFunction,

package/dist/{jpeg-HoY3tQW-.js → jpeg-BchP2GI5.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-czE8px9n.js";
+import { aP as BaseDecoder } from "./index-Dr34Nsn3.js";
 const dctZigZag = new Int32Array([
   0,
   1,

package/dist/{lerc-DoPOl6hh.js → lerc-Yewj5Mkt.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { g as getDefaultExportFromCjs, aP as BaseDecoder, aQ as LercParameters, aR as LercAddCompression } from "./index-czE8px9n.js";
+import { g as getDefaultExportFromCjs, aP as BaseDecoder, aQ as LercParameters, aR as LercAddCompression } from "./index-Dr34Nsn3.js";
 var LercDecode = { exports: {} };
 var hasRequiredLercDecode;
 function requireLercDecode() {

package/dist/{lzw-DtyOGnJ3.js → lzw-DhNvTBt-.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-czE8px9n.js";
+import { aP as BaseDecoder } from "./index-Dr34Nsn3.js";
 const MIN_BITS = 9;
 const CLEAR_CODE = 256;
 const EOI_CODE = 257;

package/dist/{packbits-BomSh4rs.js → packbits-C6We0BcA.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-czE8px9n.js";
+import { aP as BaseDecoder } from "./index-Dr34Nsn3.js";
 class PackbitsDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     const dataView = new DataView(buffer);

package/dist/{raw-lwr9XUzN.js → raw-BloA4686.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-czE8px9n.js";
+import { aP as BaseDecoder } from "./index-Dr34Nsn3.js";
 class RawDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return buffer;

package/dist/{troika-three-text.esm-DXvEg9HL.js → troika-three-text.esm-C4mcmvqE.js}

@@ -1,4 +1,4 @@
-import { bA as MeshDistanceMaterial, bB as MeshDepthMaterial, bC as RGBADepthPacking, aB as UniformsUtils, bD as ShaderChunk, aw as InstancedBufferGeometry, av as Sphere, au as Box3, aH as BackSide, a9 as DoubleSide, ad as Mesh, as as FrontSide, aa as MeshBasicMaterial, i as Color, c as Vector3, k as Matrix4, d as Vector2, aJ as Matrix3, aD as Vector4, T as Texture, a1 as LinearFilter, bE as PlaneGeometry, f as BufferGeometry, ax as Float32BufferAttribute, bF as InstancedBufferAttribute } from "./index-czE8px9n.js";
+import { bA as MeshDistanceMaterial, bB as MeshDepthMaterial, bC as RGBADepthPacking, aB as UniformsUtils, bD as ShaderChunk, aw as InstancedBufferGeometry, av as Sphere, au as Box3, aH as BackSide, a9 as DoubleSide, ad as Mesh, as as FrontSide, aa as MeshBasicMaterial, i as Color, c as Vector3, k as Matrix4, d as Vector2, aJ as Matrix3, aD as Vector4, T as Texture, a1 as LinearFilter, bE as PlaneGeometry, f as BufferGeometry, ax as Float32BufferAttribute, bF as InstancedBufferAttribute } from "./index-Dr34Nsn3.js";
 function workerBootstrap() {
   var modules = /* @__PURE__ */ Object.create(null);
   function registerModule(ref, callback) {

package/dist/{webimage-cJdBwvlo.js → webimage-DyPRDNMg.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-czE8px9n.js";
+import { aP as BaseDecoder } from "./index-Dr34Nsn3.js";
 class WebImageDecoder extends BaseDecoder {
   constructor() {
     super();

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/all",
-  "version": "3.6.9",
+  "version": "3.6.11",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -17,37 +17,37 @@
   ],
   "dependencies": {
     "zod": "^3.21.4",
-    "@vitessce/styles": "3.6.9",
-    "@vitessce/constants-internal": "3.6.9",
-    "@vitessce/abstract": "3.6.9",
-    "@vitessce/error": "3.6.9",
-    "@vitessce/csv": "3.6.9",
-    "@vitessce/description": "3.6.9",
-    "@vitessce/feature-list": "3.6.9",
-    "@vitessce/genomic-profiles": "3.6.9",
-    "@vitessce/heatmap": "3.6.9",
-    "@vitessce/glb": "3.6.9",
-    "@vitessce/json": "3.6.9",
-    "@vitessce/layer-controller": "3.6.9",
-    "@vitessce/layer-controller-beta": "3.6.9",
-    "@vitessce/link-controller": "3.6.9",
-    "@vitessce/obs-sets-manager": "3.6.9",
-    "@vitessce/ome-tiff": "3.6.9",
-    "@vitessce/plugins": "3.6.9",
-    "@vitessce/scatterplot-embedding": "3.6.9",
-    "@vitessce/scatterplot-gating": "3.6.9",
-    "@vitessce/schemas": "3.6.9",
-    "@vitessce/spatial": "3.6.9",
-    "@vitessce/spatial-beta": "3.6.9",
-    "@vitessce/statistical-plots": "3.6.9",
-    "@vitessce/status": "3.6.9",
-    "@vitessce/vit-s": "3.6.9",
-    "@vitessce/zarr": "3.6.9",
-    "@vitessce/globals": "3.6.9",
-    "@vitessce/spatial-zarr": "3.6.9",
-    "@vitessce/spatial-three": "3.6.9",
-    "@vitessce/biomarker-select": "3.6.9",
-    "@vitessce/neuroglancer": "3.6.9"
+    "@vitessce/styles": "3.6.11",
+    "@vitessce/constants-internal": "3.6.11",
+    "@vitessce/abstract": "3.6.11",
+    "@vitessce/error": "3.6.11",
+    "@vitessce/csv": "3.6.11",
+    "@vitessce/description": "3.6.11",
+    "@vitessce/feature-list": "3.6.11",
+    "@vitessce/genomic-profiles": "3.6.11",
+    "@vitessce/heatmap": "3.6.11",
+    "@vitessce/glb": "3.6.11",
+    "@vitessce/json": "3.6.11",
+    "@vitessce/layer-controller": "3.6.11",
+    "@vitessce/layer-controller-beta": "3.6.11",
+    "@vitessce/link-controller": "3.6.11",
+    "@vitessce/obs-sets-manager": "3.6.11",
+    "@vitessce/ome-tiff": "3.6.11",
+    "@vitessce/plugins": "3.6.11",
+    "@vitessce/scatterplot-embedding": "3.6.11",
+    "@vitessce/scatterplot-gating": "3.6.11",
+    "@vitessce/schemas": "3.6.11",
+    "@vitessce/spatial": "3.6.11",
+    "@vitessce/spatial-beta": "3.6.11",
+    "@vitessce/statistical-plots": "3.6.11",
+    "@vitessce/status": "3.6.11",
+    "@vitessce/vit-s": "3.6.11",
+    "@vitessce/zarr": "3.6.11",
+    "@vitessce/globals": "3.6.11",
+    "@vitessce/spatial-zarr": "3.6.11",
+    "@vitessce/spatial-three": "3.6.11",
+    "@vitessce/biomarker-select": "3.6.11",
+    "@vitessce/neuroglancer": "3.6.11"
   },
   "devDependencies": {
     "@types/react": "^18.0.28",