@vitessce/all 3.6.7 → 3.6.9

package/dist/index.js

@@ -1,4 +1,4 @@
-import { bL, bJ, bH, bK, bI, bG, bM } from "./index-DC7r29QD.js";
+import { bL, bJ, bH, bK, bI, bG, bM } from "./index-czE8px9n.js";
 import { useComplexCoordination, useComplexCoordinationSecondary, useCoordination, useCoordinationScopes, useCoordinationScopesBy, useGridItemSize, useMultiCoordinationScopesNonNull, useMultiCoordinationScopesSecondaryNonNull, usePageModeView } from "@vitessce/vit-s";
 export {
   bL as PluginAsyncFunction,

package/dist/{jpeg-DNI-WseC.js → jpeg-HoY3tQW-.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-DC7r29QD.js";
+import { aP as BaseDecoder } from "./index-czE8px9n.js";
 const dctZigZag = new Int32Array([
   0,
   1,

package/dist/{lerc-DxNR6M7w.js → lerc-DoPOl6hh.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { g as getDefaultExportFromCjs, aP as BaseDecoder, aQ as LercParameters, aR as LercAddCompression } from "./index-DC7r29QD.js";
+import { g as getDefaultExportFromCjs, aP as BaseDecoder, aQ as LercParameters, aR as LercAddCompression } from "./index-czE8px9n.js";
 var LercDecode = { exports: {} };
 var hasRequiredLercDecode;
 function requireLercDecode() {

package/dist/{lzw-KwO5Ne_b.js → lzw-DtyOGnJ3.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-DC7r29QD.js";
+import { aP as BaseDecoder } from "./index-czE8px9n.js";
 const MIN_BITS = 9;
 const CLEAR_CODE = 256;
 const EOI_CODE = 257;

package/dist/{packbits-XVxuFt5L.js → packbits-BomSh4rs.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-DC7r29QD.js";
+import { aP as BaseDecoder } from "./index-czE8px9n.js";
 class PackbitsDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     const dataView = new DataView(buffer);

package/dist/{raw-DwJw-iyd.js → raw-lwr9XUzN.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-DC7r29QD.js";
+import { aP as BaseDecoder } from "./index-czE8px9n.js";
 class RawDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return buffer;

package/dist/{troika-three-text.esm-DEclBFBv.js → troika-three-text.esm-DXvEg9HL.js}

@@ -1,4 +1,4 @@
-import { bA as MeshDistanceMaterial, bB as MeshDepthMaterial, bC as RGBADepthPacking, aB as UniformsUtils, bD as ShaderChunk, aw as InstancedBufferGeometry, av as Sphere, au as Box3, aH as BackSide, a9 as DoubleSide, ad as Mesh, as as FrontSide, aa as MeshBasicMaterial, i as Color, c as Vector3, k as Matrix4, d as Vector2, aJ as Matrix3, aD as Vector4, T as Texture, a1 as LinearFilter, bE as PlaneGeometry, f as BufferGeometry, ax as Float32BufferAttribute, bF as InstancedBufferAttribute } from "./index-DC7r29QD.js";
+import { bA as MeshDistanceMaterial, bB as MeshDepthMaterial, bC as RGBADepthPacking, aB as UniformsUtils, bD as ShaderChunk, aw as InstancedBufferGeometry, av as Sphere, au as Box3, aH as BackSide, a9 as DoubleSide, ad as Mesh, as as FrontSide, aa as MeshBasicMaterial, i as Color, c as Vector3, k as Matrix4, d as Vector2, aJ as Matrix3, aD as Vector4, T as Texture, a1 as LinearFilter, bE as PlaneGeometry, f as BufferGeometry, ax as Float32BufferAttribute, bF as InstancedBufferAttribute } from "./index-czE8px9n.js";
 function workerBootstrap() {
   var modules = /* @__PURE__ */ Object.create(null);
   function registerModule(ref, callback) {

package/dist/{webimage-CJom0KqV.js → webimage-cJdBwvlo.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-DC7r29QD.js";
+import { aP as BaseDecoder } from "./index-czE8px9n.js";
 class WebImageDecoder extends BaseDecoder {
   constructor() {
     super();

package/dist-tsc/base-plugins.d.ts

@@ -250,7 +250,7 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
         path: string;
         coordinateSystem?: string | undefined;
     }>>;
-    labels: z.ZodOptional<z.ZodObject<{
+    obsSegmentations: z.ZodOptional<z.ZodObject<{
         path: z.ZodString;
         tablePath: z.ZodOptional<z.ZodString>;
         coordinateSystem: z.ZodOptional<z.ZodString>;
@@ -263,7 +263,7 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
         tablePath?: string | undefined;
         coordinateSystem?: string | undefined;
     }>>;
-    shapes: z.ZodOptional<z.ZodObject<{
+    obsPoints: z.ZodOptional<z.ZodObject<{
         path: z.ZodString;
         tablePath: z.ZodOptional<z.ZodString>;
         coordinateSystem: z.ZodOptional<z.ZodString>;
@@ -347,12 +347,12 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
         path: string;
         coordinateSystem?: string | undefined;
     } | undefined;
-    labels?: {
+    obsSegmentations?: {
         path: string;
         tablePath?: string | undefined;
         coordinateSystem?: string | undefined;
     } | undefined;
-    shapes?: {
+    obsPoints?: {
         path: string;
         tablePath?: string | undefined;
         coordinateSystem?: string | undefined;
@@ -384,12 +384,12 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
         path: string;
         coordinateSystem?: string | undefined;
     } | undefined;
-    labels?: {
+    obsSegmentations?: {
         path: string;
         tablePath?: string | undefined;
         coordinateSystem?: string | undefined;
     } | undefined;
-    shapes?: {
+    obsPoints?: {
         path: string;
         tablePath?: string | undefined;
         coordinateSystem?: string | undefined;

package/dist-tsc/base-plugins.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"base-plugins.d.ts","sourceRoot":"","sources":["../src/base-plugins.ts"],"names":[],"mappings":"AAWA,OAAO,EACL,cAAc,EACd,mBAAmB,EACnB,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,KAAK,EACV,UAAU,EACV,UAAU,EACX,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,CAAC,EAkDF,MAAM,mBAAmB,CAAC;AAwK3B,eAAO,MAAM,aAAa,kBA8BzB,CAAC;AAEF,eAAO,MAAM,aAAa,wDAwEzB,CAAC;AAEF,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yBAqFnB,CAAC;gCAAsD,CAAC;;;yBACA,CAAC;gCACxB,CAAC;;;;;;;;;;;;;;;;iBAUN,CAAC;;;;iBAEpB,CAAC;;;;;;;YAMD,CAAC;;;YAGnB,CAAC;;;;;;;YAOS,CAAA;;;YAIT,CAAD;;;;;;;YAIwD,CAAC;;;YAClC,CAAC;;;;;;;;;;;;;;YAWjB,CAAC;;;YAGG,CAAC;;;;;;;;YAMa,CAAC;;;;YAIM,CAAC;;;;;;;;;;;;;;;;;;;;;;;;yBAqBlC,CAAC;gCACwB,CAAC;;;;;;;;iBAUxB,CAAC;;;;YAIG,CAAC;;;;YAGM,CAAC;;;;YAGZ,CAAC;;;;;;;YAEH,CAAD;;;;YACQ,CAAC;;;;;;;;;;;;;;;;;;;;yBAIoE,CAAC;gCACrC,CAAC;;;;;;;;iBAEwC,CAAC;;;;YACd,CAAA;;;;YACC,CAAC;;;;YACI,CAAC;;;;;;;YAEZ,CAAC;;;;YACjC,CAAC;;;;;;;;;;;wBAiEg3C,CAAC;;;wBAA6E,CAAC;;;;;;;;iBAA8Q,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;iBAA8Q,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;yBAAkZ,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;yBAA8E,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;;;;;iBAAgR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;;;qBAAygB,CAAC;;;;qBAA2J,CAAC;;;;;;qBAAsN,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;qBAA0K,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;wBAAwL,CAAC;;;;iBAA+F,CAAC;wBAA8C,CAAC;;;;iBAA+F,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;wBAAqJ,CAAC;;;;iBAA+F,CAAC;wBAA8C,CAAC;;;;iBAA+F,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBArhB76N,CAAC;;;;;qBAGU,CAAC;qBAA4C,CAAC;;;;;;;;;qBAIlD,CAAC;6BACZ,CAAA;;sBAEa,CAAC;;;;;qBAOY,CAAC;qBACK,CAAC;;;;;;;;;qBAa/B,CAAC;6BAEH,CAAC;;;;;;;;;;;;;kBAwBC,CAAC;mBACO,CAAC;gBAEH,CAAC;gBAEd,CAAF;uBACY,CAAC;iBAEX,CAAC;oBACY,CAAC;oBAEb,CAAC;qBACQ,CAAC;;kBAER,CAAC;mBAEC,CAAC;gBAGK,CAAC;gBACA,CAAC;uBAGV,CAAC;iBAGI,CAAC;oBAET,CAAA;oBACgB,CAAC;qBAEV,CAAC;;;;;;gBAMP,CAAC;sBACiB,CAAC;;;;;qBAYf,CAAC;qBACY,CAAC;;;;;;;;;qBAWN,CAAC;6BAEH,CAAC;;mBAGZ,CAAD;kBACC,CAAA;mBACW,CAAC;gBAGX,CAAC;gBACe,CAAC;uBAEK,CAAC;iBAEd,CAAC;oBACb,CAAA;oBAA0C,CAAC;qBACX,CAAC;;;;;;gBAGiC,CAAC;sBAA0B,CAAC;;;;;qBAGlF,CAAC;qBAA4C,CAAC;;;;;;;;;qBAEvB,CAAC;6BAEV,CAAC;;mBAAgE,CAAC;kBAC/E,CAAC;mBAAyC,CAAC;gBACZ,CAAC;gBACrC,CAAA;uBACa,CAAC;iBACa,CAAC;oBAA0C,CAAC;oBAC3E,CAAJ;qBAI2B,CAAC;;;;;;;;;gBAIV,CAAC;sBAA0B,CAAC;;;;;qBAI5C,CAAC;qBAA4C,CAAC;;;;;;;;;qBAInB,CAAC;6BACC,CAAC;;mBAC9B,CAAC;kBAAsB,CAAC;mBACxB,CAAF;gBAAmD,CAAC;gBAC3C,CAAC;uBAA6C,CAAC;iBAC9B,CAAC;oBACJ,CAAC;oBAA0C,CAAC;qBAC3B,CAAC;;;;;;;;;;;gBAIY,CAAC;sBAC1C,CAAC;;;;;qBAGS,CAAC;qBAA4C,CAAC;;;;;;;;;qBAM7D,CAAC;6BAC4B,CAAC;;mBAAgE,CAAC;kBACnF,CAAC;mBAAyC,CAAC;gBAAmD,CAAC;gBACvF,CAAC;uBAA6C,CAAC;iBACtE,CAAC;oBAA0C,CAAC;oBAA0C,CAAC;qBACtE,CAAC;;;;;;;;;;;;;;OAsFrB,CAAC;AAIF,eAAO,MAAM,qBAAqB;;;;;;;;aA7VtB,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cAEF,CAAD;eAEU,CAAC;;;;;;;;;;;;;;;;;;;aAiB0B,CAAC;cACjB,CAAC;eAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;aAlEnD,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cAEF,CAAD;eAEU,CAAC;;;;;;;;;;;;;;;;;;;aAiB0B,CAAC;cACjB,CAAC;eAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kzBA4gB9D,CAAC;AAEF,eAAO,MAAM,kBAAkB,uBAK9B,CAAC"}
+{"version":3,"file":"base-plugins.d.ts","sourceRoot":"","sources":["../src/base-plugins.ts"],"names":[],"mappings":"AAWA,OAAO,EACL,cAAc,EACd,mBAAmB,EACnB,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,KAAK,EACV,UAAU,EACV,UAAU,EACX,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,CAAC,EAmDF,MAAM,mBAAmB,CAAC;AA0K3B,eAAO,MAAM,aAAa,kBA8BzB,CAAC;AAEF,eAAO,MAAM,aAAa,wDAyEzB,CAAC;AAEF,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yBAuFR,CAAC;gCAAsD,CAAC;;;yBACF,CAAC;gCAC1B,CAAC;;;;;;;;;;;;;;;;iBAYjD,CAAF;;;;iBAEkG,CAAC;;;;;;;YAOnG,CAAC;;;YAEC,CAAC;;;;;;;YAS+B,CAAC;;;YAAmE,CAAC;;;;;;;YAKrG,CAAH;;;YAEiB,CAAC;;;;;;;;;;;;;;YAcD,CAAC;;;YAAmE,CAAC;;;;;;;;YAMgB,CAAC;;;;YAEhE,CAAC;;;;;;;;;;;;;;;;;;;;;;;;yBAyBvB,CAAC;gCAEb,CAAC;;;;;;;;iBASH,CAAF;;;;YAGoD,CAAC;;;;YACiB,CAAC;;;;YAEvE,CAAC;;;;;;;YACyE,CAAC;;;;YACD,CAAC;;;;;;;;;;;;;;;;;;;;yBAKnB,CAAC;gCAC5C,CAAC;;;;;;;;iBAE+B,CAAC;;;;YACA,CAAC;;;;YACM,CAAC;;;;YACW,CAAC;;;;;;;YACgC,CAAC;;;;YAC7B,CAAC;;;;;;;;;;;wBAgEg/C,CAAC;;;wBAA6E,CAAC;;;;;;;;iBAAwR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;iBAAiR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;yBAAkZ,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;yBAA8E,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;;;;;iBAAgR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;;;qBAAygB,CAAC;;;;qBAA2J,CAAC;;;;;;qBAAsN,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;qBAA0K,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;wBAAwL,CAAC;;;;iBAAyG,CAAC;wBAA8C,CAAC;;;;iBAAkG,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;wBAAqJ,CAAC;;;;iBAAyG,CAAC;wBAA8C,CAAC;;;;iBAAkG,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBAzhBzlO,CAAC;;;;;qBAGkB,CAAC;qBAC5B,CAAC;;;;;;;;;qBAGyC,CAAC;6BACvC,CAAC;;sBAEjB,CAAC;;;;;qBAQvB,CAAC;qBACK,CAAC;;;;;;;;;qBAYR,CAAA;6BAEC,CAAC;;;;;;;;;;;;;kBAwBQ,CAAC;mBACQ,CAAC;gBAEZ,CAAC;gBACa,CAAC;uBAEV,CAAC;iBACM,CAAC;oBAER,CAAC;oBAEd,CAAD;qBACgB,CAAC;;kBAEX,CAAC;mBACS,CAAC;gBAIhB,CAAA;gBACoB,CAAC;uBAErB,CAAA;iBAGI,CAAC;oBAEgB,CAAC;oBAEV,CAAC;qBAEV,CAAC;;;;;;gBAKS,CAAC;sBACX,CAAC;;;;;qBAWH,CAAC;qBAGD,CAAC;;;;;;;;;qBAUW,CAAC;6BAEM,CAAC;;mBAGN,CAAC;kBACJ,CAAC;mBACI,CAAC;gBAGZ,CAAC;gBACQ,CAAC;uBAGhB,CAAA;iBACgB,CAAC;oBAEE,CAAC;oBAEX,CAAC;qBACZ,CAAA;;;;;;gBACiF,CAAC;sBAG5E,CAAC;;;;;qBAC2B,CAAA;qBAA4C,CAAC;;;;;;;;;qBAGqD,CAAC;6BACnI,CAAA;;mBAEE,CAAC;kBAAsB,CAAC;mBAAyC,CAAC;gBAClD,CAAC;gBAAsC,CAAC;uBAClB,CAAC;iBACnC,CAAD;oBACU,CAAC;oBACgB,CAAC;qBAA2C,CAAC;;;;;;;;;gBAQ7E,CAAA;sBAA0B,CAAC;;;;;qBAGC,CAAC;qBACT,CAAC;;;;;;;;;qBAIF,CAAC;6BAAoD,CAAC;;mBAElE,CAAC;kBAAsB,CAAC;mBAAyC,CAAC;gBAC3C,CAAC;gBAC9B,CAAC;uBAA6C,CAAC;iBAC1C,CAAC;oBAA0C,CAAC;oBAC1B,CAAA;qBACH,CAAC;;;;;;;;;;;gBAIY,CAAC;sBAA0B,CAAC;;;;;qBAIrD,CAAC;qBAA4C,CAAC;;;;;;;;;qBAGL,CAAC;6BAGjD,CAAC;;mBAES,CAAC;kBAAuB,CAAA;mBAAyC,CAAC;gBACtD,CAAC;gBAAsC,CAAC;uBAA6C,CAAC;iBACtF,CAAC;oBAA0C,CAAC;oBACnE,CAAC;qBAA2C,CAAC;;;;;;;;;;;;;;OAwF/C,CAAC;AAIF,eAAO,MAAM,qBAAqB;;;;;;;;aAjWtB,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cACQ,CAAC;eAEH,CAAC;;;;;;;;;;;;;;;;;;;aAmBF,CAAA;cAAsC,CAAC;eACf,CAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;aAnErB,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cACQ,CAAC;eAEH,CAAC;;;;;;;;;;;;;;;;;;;aAmBF,CAAA;cAAsC,CAAC;eACf,CAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kzBA+gBhC,CAAC;AAEF,eAAO,MAAM,kBAAkB,uBAK9B,CAAC"}

package/dist-tsc/base-plugins.js

@@ -1,6 +1,6 @@
 import { FileType, DataType, ViewType, CoordinationType, AsyncFunctionType, COMPONENT_COORDINATION_TYPES, ALT_ZARR_STORE_TYPES, } from '@vitessce/constants-internal';
 import { PluginFileType, PluginJointFileType, PluginViewType, PluginCoordinationType, PluginAsyncFunction, } from '@vitessce/plugins';
-import { z, obsEmbeddingCsvSchema, obsSetsCsvSchema, obsSpotsCsvSchema, obsPointsCsvSchema, obsLocationsCsvSchema, obsLabelsCsvSchema, featureLabelsCsvSchema, sampleSetsCsvSchema, obsSetsAnndataSchema, sampleSetsAnndataSchema, obsEmbeddingAnndataSchema, obsSpotsAnndataSchema, obsPointsAnndataSchema, obsLocationsAnndataSchema, obsLabelsAnndataSchema, obsFeatureMatrixAnndataSchema, obsFeatureColumnsAnndataSchema, obsSegmentationsAnndataSchema, featureLabelsAnndataSchema, sampleEdgesAnndataSchema, comparisonMetadataAnndataSchema, featureStatsAnndataSchema, featureSetStatsAnndataSchema, obsSetStatsAnndataSchema, rasterJsonSchema, anndataZarrSchema, anndataH5adSchema, spatialdataZarrSchema, anndataCellsZarrSchema, anndataCellSetsZarrSchema, anndataExpressionMatrixZarrSchema, cellsJsonSchema, imageOmeZarrSchema, imageOmeTiffSchema, imageSpatialdataSchema, obsSegmentationsOmeTiffSchema, obsSegmentationsOmeZarrSchema, obsSegmentationsSpatialdataSchema, obsFeatureMatrixSpatialdataSchema, obsSpotsSpatialdataSchema, obsSetsSpatialdataSchema, obsSetPath, rgbArray, obsSetsSchema, imageLayerObj, cellsLayerObj, neighborhoodsLayerObj, moleculesLayerObj, meshGlbSchema, } from '@vitessce/schemas';
+import { z, obsEmbeddingCsvSchema, obsSetsCsvSchema, obsSpotsCsvSchema, obsPointsCsvSchema, obsLocationsCsvSchema, obsLabelsCsvSchema, featureLabelsCsvSchema, sampleSetsCsvSchema, obsSetsAnndataSchema, sampleSetsAnndataSchema, obsEmbeddingAnndataSchema, obsSpotsAnndataSchema, obsPointsAnndataSchema, obsLocationsAnndataSchema, obsLabelsAnndataSchema, obsFeatureMatrixAnndataSchema, obsFeatureColumnsAnndataSchema, obsSegmentationsAnndataSchema, featureLabelsAnndataSchema, sampleEdgesAnndataSchema, comparisonMetadataAnndataSchema, featureStatsAnndataSchema, featureSetStatsAnndataSchema, obsSetStatsAnndataSchema, rasterJsonSchema, anndataZarrSchema, anndataH5adSchema, spatialdataZarrSchema, anndataCellsZarrSchema, anndataCellSetsZarrSchema, anndataExpressionMatrixZarrSchema, cellsJsonSchema, imageOmeZarrSchema, imageOmeTiffSchema, imageSpatialdataSchema, obsSegmentationsOmeTiffSchema, obsSegmentationsOmeZarrSchema, obsSegmentationsSpatialdataSchema, obsFeatureMatrixSpatialdataSchema, obsSpotsSpatialdataSchema, obsPointsSpatialdataSchema, obsSetsSpatialdataSchema, obsSetPath, rgbArray, obsSetsSchema, imageLayerObj, cellsLayerObj, neighborhoodsLayerObj, moleculesLayerObj, meshGlbSchema, } from '@vitessce/schemas';
 // Register view type plugins
 import { DescriptionSubscriber } from '@vitessce/description';
 import { ObsSetsManagerSubscriber } from '@vitessce/obs-sets-manager';
@@ -37,7 +37,7 @@ import {
 // OME
 OmeZarrLoader, OmeZarrAsObsSegmentationsLoader, 
 // SpatialData
-SpatialDataTableSource, SpatialDataShapesSource, SpatialDataImageLoader, SpatialDataLabelsLoader, SpatialDataObsSpotsLoader, SpatialDataObsSegmentationsLoader, SpatialDataObsSetsLoader, } from '@vitessce/spatial-zarr';
+SpatialDataTableSource, SpatialDataShapesSource, SpatialDataPointsSource, SpatialDataImageLoader, SpatialDataLabelsLoader, SpatialDataObsSpotsLoader, SpatialDataObsPointsLoader, SpatialDataObsSegmentationsLoader, SpatialDataObsSetsLoader, } from '@vitessce/spatial-zarr';
 import { OmeTiffAsObsSegmentationsLoader, OmeTiffLoader, OmeTiffSource, } from '@vitessce/ome-tiff';
 import { GlbSource, GlbLoader, } from '@vitessce/glb';
 // Joint file types
@@ -147,6 +147,7 @@ export const baseFileTypes = [
     makeFileType(FileType.LABELS_SPATIALDATA_ZARR, DataType.OBS_SEGMENTATIONS, SpatialDataLabelsLoader, ZarrDataSource, obsSegmentationsSpatialdataSchema),
     makeFileType(FileType.SHAPES_SPATIALDATA_ZARR, DataType.OBS_SEGMENTATIONS, SpatialDataObsSegmentationsLoader, SpatialDataShapesSource, obsSegmentationsSpatialdataSchema),
     makeFileType(FileType.OBS_SPOTS_SPATIALDATA_ZARR, DataType.OBS_SPOTS, SpatialDataObsSpotsLoader, SpatialDataShapesSource, obsSpotsSpatialdataSchema),
+    makeFileType(FileType.OBS_POINTS_SPATIALDATA_ZARR, DataType.OBS_POINTS, SpatialDataObsPointsLoader, SpatialDataPointsSource, obsPointsSpatialdataSchema),
     makeFileType(FileType.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR, DataType.OBS_FEATURE_MATRIX, ObsFeatureMatrixAnndataLoader, SpatialDataTableSource, obsFeatureMatrixSpatialdataSchema),
     makeFileType(FileType.OBS_SETS_SPATIALDATA_ZARR, DataType.OBS_SETS, SpatialDataObsSetsLoader, SpatialDataTableSource, obsSetsSpatialdataSchema),
     makeFileType(FileType.OBS_SEGMENTATIONS_GLB, DataType.OBS_SEGMENTATIONS, GlbLoader, GlbSource, meshGlbSchema),

package/dist-tsc/joint-file-types.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"joint-file-types.d.ts","sourceRoot":"","sources":["../src/joint-file-types.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAC7B,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,mBAAmB,CAAC;AA6B7D,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,SAsO7E;AAED,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC;;;;;;;;UAjQ1E,MAAM;kBACE,GAAG;;;;;;;UADX,MAAM;kBACE,GAAG;;;;;;;UADX,MAAM;kBACE,GAAG;KA8WlB"}
+{"version":3,"file":"joint-file-types.d.ts","sourceRoot":"","sources":["../src/joint-file-types.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAC7B,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,mBAAmB,CAAC;AA6B7D,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,SAsO7E;AAED,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC;;;;;;;;UAjQ1E,MAAM;kBACE,GAAG;;;;;;;UADX,MAAM;kBACE,GAAG;;;;;;;UADX,MAAM;kBACE,GAAG;KAkXlB"}

package/dist-tsc/joint-file-types.js

@@ -320,14 +320,18 @@ export function expandSpatialdataZarr(fileDef) {
                     // TODO: fileUid?
                 },
             }] : []),
-        // labels
-        // TODO: handle multiple labels?
-        ...(options.labels ? [{
+        // labels/shapes
+        ...(options.obsSegmentations ? [{
                 ...baseFileDef,
-                fileType: getFileType(FileType.LABELS_SPATIALDATA_ZARR),
+                // Determine the fileType based on the path.
+                // If the path starts with "labels/", use LABELS_SPATIALDATA_ZARR,
+                // otherwise use SHAPES_SPATIALDATA_ZARR.
+                fileType: (options.obsSegmentations.path.startsWith('labels/')
+                    ? getFileType(FileType.LABELS_SPATIALDATA_ZARR)
+                    : getFileType(FileType.SHAPES_SPATIALDATA_ZARR)),
                 options: {
                     coordinateSystem: defaultCoordinateSystem,
-                    ...options.labels,
+                    ...options.obsSegmentations,
                 },
                 coordinationValues: {
                     ...extraCoordinationValues,
@@ -335,14 +339,13 @@ export function expandSpatialdataZarr(fileDef) {
                     // TODO: fileUid?
                 },
             }] : []),
-        // shapes
-        // TODO: handle multiple shape elements?
-        ...(options.shapes ? [{
+        // points
+        ...(options.obsPoints ? [{
                 ...baseFileDef,
-                fileType: getFileType(FileType.SHAPES_SPATIALDATA_ZARR),
+                fileType: getFileType(FileType.OBS_POINTS_SPATIALDATA_ZARR),
                 options: {
                     coordinateSystem: defaultCoordinateSystem,
-                    ...options.shapes,
+                    ...options.obsPoints,
                 },
                 coordinationValues: {
                     ...extraCoordinationValues,

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/all",
-  "version": "3.6.7",
+  "version": "3.6.9",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -17,36 +17,37 @@
   ],
   "dependencies": {
     "zod": "^3.21.4",
-    "@vitessce/styles": "3.6.7",
-    "@vitessce/constants-internal": "3.6.7",
-    "@vitessce/abstract": "3.6.7",
-    "@vitessce/csv": "3.6.7",
-    "@vitessce/description": "3.6.7",
-    "@vitessce/feature-list": "3.6.7",
-    "@vitessce/genomic-profiles": "3.6.7",
-    "@vitessce/heatmap": "3.6.7",
-    "@vitessce/glb": "3.6.7",
-    "@vitessce/json": "3.6.7",
-    "@vitessce/layer-controller": "3.6.7",
-    "@vitessce/layer-controller-beta": "3.6.7",
-    "@vitessce/link-controller": "3.6.7",
-    "@vitessce/obs-sets-manager": "3.6.7",
-    "@vitessce/ome-tiff": "3.6.7",
-    "@vitessce/plugins": "3.6.7",
-    "@vitessce/scatterplot-embedding": "3.6.7",
-    "@vitessce/scatterplot-gating": "3.6.7",
-    "@vitessce/schemas": "3.6.7",
-    "@vitessce/spatial": "3.6.7",
-    "@vitessce/spatial-beta": "3.6.7",
-    "@vitessce/statistical-plots": "3.6.7",
-    "@vitessce/status": "3.6.7",
-    "@vitessce/vit-s": "3.6.7",
-    "@vitessce/zarr": "3.6.7",
-    "@vitessce/globals": "3.6.7",
-    "@vitessce/spatial-zarr": "3.6.7",
-    "@vitessce/spatial-three": "3.6.7",
-    "@vitessce/biomarker-select": "3.6.7",
-    "@vitessce/neuroglancer": "3.6.7"
+    "@vitessce/styles": "3.6.9",
+    "@vitessce/constants-internal": "3.6.9",
+    "@vitessce/abstract": "3.6.9",
+    "@vitessce/error": "3.6.9",
+    "@vitessce/csv": "3.6.9",
+    "@vitessce/description": "3.6.9",
+    "@vitessce/feature-list": "3.6.9",
+    "@vitessce/genomic-profiles": "3.6.9",
+    "@vitessce/heatmap": "3.6.9",
+    "@vitessce/glb": "3.6.9",
+    "@vitessce/json": "3.6.9",
+    "@vitessce/layer-controller": "3.6.9",
+    "@vitessce/layer-controller-beta": "3.6.9",
+    "@vitessce/link-controller": "3.6.9",
+    "@vitessce/obs-sets-manager": "3.6.9",
+    "@vitessce/ome-tiff": "3.6.9",
+    "@vitessce/plugins": "3.6.9",
+    "@vitessce/scatterplot-embedding": "3.6.9",
+    "@vitessce/scatterplot-gating": "3.6.9",
+    "@vitessce/schemas": "3.6.9",
+    "@vitessce/spatial": "3.6.9",
+    "@vitessce/spatial-beta": "3.6.9",
+    "@vitessce/statistical-plots": "3.6.9",
+    "@vitessce/status": "3.6.9",
+    "@vitessce/vit-s": "3.6.9",
+    "@vitessce/zarr": "3.6.9",
+    "@vitessce/globals": "3.6.9",
+    "@vitessce/spatial-zarr": "3.6.9",
+    "@vitessce/spatial-three": "3.6.9",
+    "@vitessce/biomarker-select": "3.6.9",
+    "@vitessce/neuroglancer": "3.6.9"
   },
   "devDependencies": {
     "@types/react": "^18.0.28",

package/src/base-plugins.ts

@@ -62,6 +62,7 @@ import {
   obsSegmentationsSpatialdataSchema,
   obsFeatureMatrixSpatialdataSchema,
   obsSpotsSpatialdataSchema,
+  obsPointsSpatialdataSchema,
   obsSetsSpatialdataSchema,
   obsSetPath,
   rgbArray,
@@ -170,9 +171,11 @@ import {
   // SpatialData
   SpatialDataTableSource,
   SpatialDataShapesSource,
+  SpatialDataPointsSource,
   SpatialDataImageLoader,
   SpatialDataLabelsLoader,
   SpatialDataObsSpotsLoader,
+  SpatialDataObsPointsLoader,
   SpatialDataObsSegmentationsLoader,
   SpatialDataObsSetsLoader,
 } from '@vitessce/spatial-zarr';
@@ -323,6 +326,7 @@ export const baseFileTypes = [
   makeFileType(FileType.LABELS_SPATIALDATA_ZARR, DataType.OBS_SEGMENTATIONS, SpatialDataLabelsLoader, ZarrDataSource, obsSegmentationsSpatialdataSchema),
   makeFileType(FileType.SHAPES_SPATIALDATA_ZARR, DataType.OBS_SEGMENTATIONS, SpatialDataObsSegmentationsLoader, SpatialDataShapesSource, obsSegmentationsSpatialdataSchema),
   makeFileType(FileType.OBS_SPOTS_SPATIALDATA_ZARR, DataType.OBS_SPOTS, SpatialDataObsSpotsLoader, SpatialDataShapesSource, obsSpotsSpatialdataSchema),
+  makeFileType(FileType.OBS_POINTS_SPATIALDATA_ZARR, DataType.OBS_POINTS, SpatialDataObsPointsLoader, SpatialDataPointsSource, obsPointsSpatialdataSchema),
   makeFileType(FileType.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR, DataType.OBS_FEATURE_MATRIX, ObsFeatureMatrixAnndataLoader, SpatialDataTableSource, obsFeatureMatrixSpatialdataSchema),
   makeFileType(FileType.OBS_SETS_SPATIALDATA_ZARR, DataType.OBS_SETS, SpatialDataObsSetsLoader, SpatialDataTableSource, obsSetsSpatialdataSchema),
 

package/src/joint-file-types.ts

@@ -339,14 +339,19 @@ export function expandSpatialdataZarr(fileDef: z.infer<typeof latestFileDefSchem
         // TODO: fileUid?
       },
     }] : []),
-    // labels
-    // TODO: handle multiple labels?
-    ...(options.labels ? [{
+    // labels/shapes
+    ...(options.obsSegmentations ? [{
       ...baseFileDef,
-      fileType: getFileType(FileType.LABELS_SPATIALDATA_ZARR),
+      // Determine the fileType based on the path.
+      // If the path starts with "labels/", use LABELS_SPATIALDATA_ZARR,
+      // otherwise use SHAPES_SPATIALDATA_ZARR.
+      fileType: (options.obsSegmentations.path.startsWith('labels/')
+        ? getFileType(FileType.LABELS_SPATIALDATA_ZARR)
+        : getFileType(FileType.SHAPES_SPATIALDATA_ZARR)
+      ),
       options: {
         coordinateSystem: defaultCoordinateSystem,
-        ...options.labels,
+        ...options.obsSegmentations,
       },
       coordinationValues: {
         ...extraCoordinationValues,
@@ -354,14 +359,13 @@ export function expandSpatialdataZarr(fileDef: z.infer<typeof latestFileDefSchem
         // TODO: fileUid?
       },
     }] : []),
-    // shapes
-    // TODO: handle multiple shape elements?
-    ...(options.shapes ? [{
+    // points
+    ...(options.obsPoints ? [{
       ...baseFileDef,
-      fileType: getFileType(FileType.SHAPES_SPATIALDATA_ZARR),
+      fileType: getFileType(FileType.OBS_POINTS_SPATIALDATA_ZARR),
       options: {
         coordinateSystem: defaultCoordinateSystem,
-        ...options.shapes,
+        ...options.obsPoints,
       },
       coordinationValues: {
         ...extraCoordinationValues,