@vitessce/all 3.6.3 → 3.6.4

package/dist/{ReactNeuroglancer-CKMORRgM.js → ReactNeuroglancer-Cdyy6KYr.js}

@@ -1,4 +1,4 @@
-import { g as getDefaultExportFromCjs, aV as requireAssign, aW as require_export, aX as require_core, aY as require_fails, aZ as require_toObject, a_ as require_objectKeys, a$ as require_cof, b0 as require_wks, b1 as require_iterators, b2 as requireWeb_dom_iterable, b3 as requireEs6_string_iterator, b4 as require_anObject, b5 as require_hide, b6 as require_ctx, b7 as require_toLength, b8 as require_global, b9 as require_objectDp, ba as require_descriptors, bb as require_isObject, bc as require_objectCreate, bd as require_iterDefine, be as require_iterStep, bf as require_meta, bg as require_isArray, bh as require_iobject, bi as require_setToStringTag, bj as require_aFunction, bk as requireIterator, bl as require_propertyDesc, aS as commonjsGlobal, bm as requireEs6_symbol, bn as requireDefineProperty, bo as require_toIobject, bp as require_objectGopd, bq as require_html, br as require_domCreate, bs as require_library, bt as requireSymbol, bu as require_objectPie, bv as require_has, bw as require_redefine, bx as require_objectAssign, by as getAugmentedNamespace, bz as requirePropTypes, aI as jsxRuntimeExports } from "./index-CbSllawi.js";
+import { g as getDefaultExportFromCjs, aV as requireAssign, aW as require_export, aX as require_core, aY as require_fails, aZ as require_toObject, a_ as require_objectKeys, a$ as require_cof, b0 as require_wks, b1 as require_iterators, b2 as requireWeb_dom_iterable, b3 as requireEs6_string_iterator, b4 as require_anObject, b5 as require_hide, b6 as require_ctx, b7 as require_toLength, b8 as require_global, b9 as require_objectDp, ba as require_descriptors, bb as require_isObject, bc as require_objectCreate, bd as require_iterDefine, be as require_iterStep, bf as require_meta, bg as require_isArray, bh as require_iobject, bi as require_setToStringTag, bj as require_aFunction, bk as requireIterator, bl as require_propertyDesc, aS as commonjsGlobal, bm as requireEs6_symbol, bn as requireDefineProperty, bo as require_toIobject, bp as require_objectGopd, bq as require_html, br as require_domCreate, bs as require_library, bt as requireSymbol, bu as require_objectPie, bv as require_has, bw as require_redefine, bx as require_objectAssign, by as getAugmentedNamespace, bz as requirePropTypes, aI as jsxRuntimeExports } from "./index-KG6yVDeM.js";
 import React__default from "react";
 var lib = {};
 var assignExports = requireAssign();

package/dist/{deflate-B7HotUQS.js → deflate-BSP3an_k.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { aP as BaseDecoder } from "./index-CbSllawi.js";
+import { aP as BaseDecoder } from "./index-KG6yVDeM.js";
 class DeflateDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return inflate_1(new Uint8Array(buffer)).buffer;

package/dist/{higlass-C-jSScTq.js → higlass-Cm-4roQO.js}

@@ -1,6 +1,6 @@
 import React__default, { createElement, isValidElement, PureComponent, Component } from "react";
 import ReactDOM__default, { findDOMNode as findDOMNode$1 } from "react-dom";
-import { aS as commonjsGlobal$1, aT as requireObjectAssign, g as getDefaultExportFromCjs$1, aU as earcut } from "./index-CbSllawi.js";
+import { aS as commonjsGlobal$1, aT as requireObjectAssign, g as getDefaultExportFromCjs$1, aU as earcut } from "./index-KG6yVDeM.js";
 var promise = {};
 var hasRequiredPromise;
 function requirePromise() {

package/dist/{index-CbSllawi.js → index-KG6yVDeM.js}

@@ -9,7 +9,7 @@ var __privateGet = (obj, member, getter2) => (__accessCheck(obj, member, "read f
 var __privateAdd = (obj, member, value2) => member.has(obj) ? __typeError("Cannot add the same private member more than once") : member instanceof WeakSet ? member.add(obj) : member.set(obj, value2);
 var __privateSet = (obj, member, value2, setter2) => (__accessCheck(obj, member, "write to private field"), setter2 ? setter2.call(obj, value2) : member.set(obj, value2), value2);
 var __privateMethod = (obj, member, method2) => (__accessCheck(obj, member, "access private method"), method2);
-var _a2, _b2, _bytes, _c, _encoder, _d, _data, _e, _stride, _TypedArray, _BYTES_PER_ELEMENT, _shape, _endian, _f, _encoder_config, _decoder_config, _g, _order, _inverseOrder, _h, _shape2, _strides, _i, _metadata, _j, _metadata2, _k, _overrides, _use_suffix_request, _FetchStore_instances, merge_init_fn, _overrides2, _refs, _opts, _overrides3, _focused, _cleanup, _setup, _l2, _online, _cleanup2, _setup2, _m2, _client, _currentQuery, _currentQueryInitialState, _currentResult, _currentResultState, _currentResultOptions, _currentThenable, _selectError, _selectFn, _selectResult, _lastQueryWithDefinedData, _staleTimeoutId, _refetchIntervalId, _currentRefetchInterval, _trackedProps, _QueryObserver_instances, executeFetch_fn, updateStaleTimeout_fn, computeRefetchInterval_fn, updateRefetchInterval_fn, updateTimers_fn, clearStaleTimeout_fn, clearRefetchInterval_fn, updateQuery_fn, notify_fn, _n, _client2, _result, _queries, _options, _observers, _combinedResult, _lastCombine, _lastResult, _observerMatches, _QueriesObserver_instances, trackResult_fn, combineResult_fn, findMatchingObservers_fn, onUpdate_fn, notify_fn2, _o2, _bytes2, _encoder2, _data2, _strides2, _TypedArray2, _BYTES_PER_ELEMENT2, _shape3, _endian2, _encoder_config2, _decoder_config2, _shape4, _strides3, _metadata3, _p, _metadata4, _q;
+var _a2, _b2, _bytes, _c, _encoder, _d, _data, _e, _stride, _TypedArray, _BYTES_PER_ELEMENT, _shape, _endian, _f, _encoder_config, _decoder_config, _g, _order, _inverseOrder, _h, _shape2, _strides, _i, _metadata, _j, _metadata2, _k, _overrides, _use_suffix_request, _FetchStore_instances, merge_init_fn, _l, _overrides2, _refs, _opts, _overrides3, _focused, _cleanup, _setup, _m2, _online, _cleanup2, _setup2, _n, _client, _currentQuery, _currentQueryInitialState, _currentResult, _currentResultState, _currentResultOptions, _currentThenable, _selectError, _selectFn, _selectResult, _lastQueryWithDefinedData, _staleTimeoutId, _refetchIntervalId, _currentRefetchInterval, _trackedProps, _QueryObserver_instances, executeFetch_fn, updateStaleTimeout_fn, computeRefetchInterval_fn, updateRefetchInterval_fn, updateTimers_fn, clearStaleTimeout_fn, clearRefetchInterval_fn, updateQuery_fn, notify_fn, _o2, _client2, _result, _queries, _options, _observers, _combinedResult, _lastCombine, _lastResult, _observerMatches, _QueriesObserver_instances, trackResult_fn, combineResult_fn, findMatchingObservers_fn, onUpdate_fn, notify_fn2, _p2, _bytes2, _encoder2, _data2, _strides2, _TypedArray2, _BYTES_PER_ELEMENT2, _shape3, _endian2, _encoder_config2, _decoder_config2, _shape4, _strides3, _metadata3, _q, _metadata4, _r, _overrides4, _use_suffix_request2, _FetchStore_instances2, merge_init_fn2;
 import * as React from "react";
 import React__default, { useContext, forwardRef as forwardRef$1, useRef, useMemo as useMemo$1, createContext, createElement, isValidElement, cloneElement, Children, version as version$6, useLayoutEffect as useLayoutEffect$1, useEffect, useImperativeHandle, PureComponent, Component as Component$1, useState, useCallback, Suspense, useReducer } from "react";
 import { useLoaders, useCoordination, useDescription, useImageData, useReady, TitleInfo, useVitessceContainer, useSetWarning, useObsSetsData, useUrls, usePlotOptionsStyles, OptionsContainer, CellColorEncodingOption, OptionSelect, useComponentHover, useComponentViewInfo, useSetComponentHover, useSetComponentViewInfo, useInitialCoordination, useDeckCanvasSize, useMultiObsLabels, useObsEmbeddingData, useFeatureSelection, useObsFeatureMatrixIndices, useFeatureLabelsData, useExpandedFeatureLabelsMap, useSampleSetsData, useSampleEdgesData, useGetObsInfo, useUint8FeatureSelection, useExpressionValueGetter, useAuxiliaryCoordination, useHasLoader, useObsLocationsData, useObsLabelsData, useObsSegmentationsData, useNeighborhoodsData, useMergeCoordination, useCoordinationScopes, useCoordinationScopesBy, useMultiCoordinationScopesSecondaryNonNull, useMultiCoordinationScopesNonNull, useComplexCoordination, useComplexCoordinationSecondary, useGridItemSize, useMultiObsPoints, usePointMultiObsLabels, useMultiObsSpots, useSpotMultiObsSets, useSpotMultiFeatureLabels, useSpotMultiFeatureSelection, useSpotMultiObsFeatureMatrixIndices, useSegmentationMultiObsLocations, useMultiObsSegmentations, useSegmentationMultiObsSets, useSegmentationMultiFeatureSelection, useSegmentationMultiObsFeatureMatrixIndices, useMultiImages, useObsFeatureMatrixData, useUint8ObsFeatureMatrix, useGetObsMembership, PopperMenu, useComponentLayout, useClosestVitessceContainerSize, useWindowDimensions, useRemoveImageChannelInMetaCoordinationScopes, useAddImageChannelInMetaCoordinationScopes, useViewConfigStoreApi, createLoaders, useWarning, useGenomicProfilesData, useMatchingLoader, useColumnNameMapping, useFeatureStatsData, useObsSetStatsData, useAsyncFunction, useFeatureSetStatsData, useViewConfig, useSetViewConfig, useComparisonMetadata, logConfig, VitSContainer } from "@vitessce/vit-s";
@@ -9039,6 +9039,7 @@ const FileType$1 = {
   ANNDATA_ZARR_ZIP: "anndata.zarr.zip",
   ANNDATA_H5AD: "anndata.h5ad",
   SPATIALDATA_ZARR: "spatialdata.zarr",
+  SPATIALDATA_ZARR_ZIP: "spatialdata.zarr.zip",
   // Atomic file types
   OBS_EMBEDDING_CSV: "obsEmbedding.csv",
   OBS_SPOTS_CSV: "obsSpots.csv",
@@ -9119,6 +9120,14 @@ const FileType$1 = {
   // TODO:
   // OBS_POINTS_SPATIALDATA_ZARR: 'obsPoints.spatialdata.zarr',
   // OBS_LOCATIONS_SPATIALDATA_ZARR: 'obsLocations.spatialdata.zarr',
+  // SpatialData - zipped
+  IMAGE_SPATIALDATA_ZARR_ZIP: "image.spatialdata.zarr.zip",
+  LABELS_SPATIALDATA_ZARR_ZIP: "labels.spatialdata.zarr.zip",
+  SHAPES_SPATIALDATA_ZARR_ZIP: "shapes.spatialdata.zarr.zip",
+  OBS_FEATURE_MATRIX_SPATIALDATA_ZARR_ZIP: "obsFeatureMatrix.spatialdata.zarr.zip",
+  OBS_SETS_SPATIALDATA_ZARR_ZIP: "obsSets.spatialdata.zarr.zip",
+  OBS_SPOTS_SPATIALDATA_ZARR_ZIP: "obsSpots.spatialdata.zarr.zip",
+  FEATURE_LABELS_SPATIALDATA_ZARR_ZIP: "featureLabels.spatialdata.zarr.zip",
   // MuData
   OBS_FEATURE_MATRIX_MUDATA_ZARR: "obsFeatureMatrix.mudata.zarr",
   OBS_SETS_MUDATA_ZARR: "obsSets.mudata.zarr",
@@ -9546,6 +9555,28 @@ const ALT_ZARR_STORE_TYPES = {
   },
   [FileType$1.OBS_SEGMENTATIONS_OME_ZARR]: {
     zip: FileType$1.OBS_SEGMENTATIONS_OME_ZARR_ZIP
+  },
+  // For SpatialData:
+  [FileType$1.IMAGE_SPATIALDATA_ZARR]: {
+    zip: FileType$1.IMAGE_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.LABELS_SPATIALDATA_ZARR]: {
+    zip: FileType$1.LABELS_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.SHAPES_SPATIALDATA_ZARR]: {
+    zip: FileType$1.SHAPES_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR]: {
+    zip: FileType$1.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.OBS_SETS_SPATIALDATA_ZARR]: {
+    zip: FileType$1.OBS_SETS_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.OBS_SPOTS_SPATIALDATA_ZARR]: {
+    zip: FileType$1.OBS_SPOTS_SPATIALDATA_ZARR_ZIP
+  },
+  [FileType$1.FEATURE_LABELS_SPATIALDATA_ZARR]: {
+    zip: FileType$1.FEATURE_LABELS_SPATIALDATA_ZARR_ZIP
   }
 };
 [
@@ -10748,6 +10779,7 @@ const anndataZarrSchema = z.object({
     z.array(annDataConvenienceFeatureLabelsItem)
   ]),
   obsFeatureMatrix: annDataObsFeatureMatrix,
+  obsFeatureColumns: annDataObsFeatureColumnsArr,
   obsSets: annDataObsSetsArr,
   obsSpots: annDataObsSpots,
   obsPoints: annDataObsPoints,
@@ -181841,29 +181873,29 @@ function requireJsts_min() {
         }, e4.prototype.getClass = function() {
           return e4;
         }, e4;
-      }(hr), _r2 = function() {
+      }(hr), _r3 = function() {
         this._leaves = new Nt(), this._root = null, this._level = 0;
       };
-      _r2.prototype.buildTree = function() {
+      _r3.prototype.buildTree = function() {
         $e.sort(this._leaves, new hr.NodeComparator());
         for (var t5 = this._leaves, e4 = null, n4 = new Nt(); ; ) {
           if (this.buildLevel(t5, n4), 1 === n4.size()) return n4.get(0);
           e4 = t5, t5 = n4, n4 = e4;
         }
-      }, _r2.prototype.insert = function(t5, e4, n4) {
+      }, _r3.prototype.insert = function(t5, e4, n4) {
         if (null !== this._root) throw new Error("Index cannot be added to once it has been queried");
         this._leaves.add(new dr(t5, e4, n4));
-      }, _r2.prototype.query = function(t5, e4, n4) {
+      }, _r3.prototype.query = function(t5, e4, n4) {
         this.init(), this._root.query(t5, e4, n4);
-      }, _r2.prototype.buildRoot = function() {
+      }, _r3.prototype.buildRoot = function() {
         if (null !== this._root) return null;
         this._root = this.buildTree();
-      }, _r2.prototype.printNode = function(t5) {
+      }, _r3.prototype.printNode = function(t5) {
         Y3.out.println(Z.toLineString(new C3(t5._min, this._level), new C3(t5._max, this._level)));
-      }, _r2.prototype.init = function() {
+      }, _r3.prototype.init = function() {
         if (null !== this._root) return null;
         this.buildRoot();
-      }, _r2.prototype.buildLevel = function(t5, e4) {
+      }, _r3.prototype.buildLevel = function(t5, e4) {
         this._level++, e4.clear();
         for (var n4 = 0; n4 < t5.size(); n4 += 2) {
           var i3 = t5.get(n4);
@@ -181873,10 +181905,10 @@ function requireJsts_min() {
             e4.add(r4);
           }
         }
-      }, _r2.prototype.interfaces_ = function() {
+      }, _r3.prototype.interfaces_ = function() {
         return [];
-      }, _r2.prototype.getClass = function() {
-        return _r2;
+      }, _r3.prototype.getClass = function() {
+        return _r3;
       };
       var mr = function() {
         this._items = new Nt();
@@ -181922,7 +181954,7 @@ function requireJsts_min() {
         return Er;
       };
       var xr = function() {
-        this._index = new _r2();
+        this._index = new _r3();
         var t5 = arguments[0];
         this.init(t5);
       };
@@ -209284,22 +209316,22 @@ async function getDecoder(fileDirectory) {
   const Decoder = await importFn();
   return new Decoder(fileDirectory);
 }
-addDecoder([void 0, 1], () => import("./raw-BnKrggy7.js").then((m2) => m2.default));
-addDecoder(5, () => import("./lzw-BWwSMLET.js").then((m2) => m2.default));
+addDecoder([void 0, 1], () => import("./raw-CoeHW2Mx.js").then((m2) => m2.default));
+addDecoder(5, () => import("./lzw-Ct4BzFEq.js").then((m2) => m2.default));
 addDecoder(6, () => {
   throw new Error("old style JPEG compression is not supported.");
 });
-addDecoder(7, () => import("./jpeg-DJyIIvO7.js").then((m2) => m2.default));
-addDecoder([8, 32946], () => import("./deflate-B7HotUQS.js").then((m2) => m2.default));
-addDecoder(32773, () => import("./packbits-CpM-jL5s.js").then((m2) => m2.default));
+addDecoder(7, () => import("./jpeg-Bh1wXUXT.js").then((m2) => m2.default));
+addDecoder([8, 32946], () => import("./deflate-BSP3an_k.js").then((m2) => m2.default));
+addDecoder(32773, () => import("./packbits-BAF4ayoO.js").then((m2) => m2.default));
 addDecoder(
   34887,
-  () => import("./lerc-B0cTVDdb.js").then(async (m2) => {
+  () => import("./lerc-1WB3uddx.js").then(async (m2) => {
     await m2.zstd.init();
     return m2;
   }).then((m2) => m2.default)
 );
-addDecoder(50001, () => import("./webimage-DkWfOrrK.js").then((m2) => m2.default));
+addDecoder(50001, () => import("./webimage-BxxoMAns.js").then((m2) => m2.default));
 function copyNewSize(array2, width2, height2, samplesPerPixel = 1) {
   return new (Object.getPrototypeOf(array2)).constructor(width2 * height2 * samplesPerPixel);
 }
@@ -248726,6 +248758,18 @@ function assert$4(expression2, msg = "") {
     throw new Error(msg);
   }
 }
+async function decompress(data2, { format: format2, signal }) {
+  const response = data2 instanceof Response ? data2 : new Response(data2);
+  assert$4(response.body, "Response does not contain body.");
+  try {
+    const decompressedResponse = new Response(response.body.pipeThrough(new DecompressionStream(format2), { signal }));
+    const buffer2 = await decompressedResponse.arrayBuffer();
+    return buffer2;
+  } catch {
+    signal == null ? void 0 : signal.throwIfAborted();
+    throw new Error(`Failed to decode ${format2}`);
+  }
+}
 class BitroundCodec {
   constructor(configuration2, _meta2) {
     this.kind = "array_to_array";
@@ -248812,6 +248856,21 @@ let Crc32cCodec$1 = class Crc32cCodec {
     return new Uint8Array(arr.buffer, arr.byteOffset, arr.byteLength - 4);
   }
 };
+class GzipCodec {
+  constructor() {
+    this.kind = "bytes_to_bytes";
+  }
+  static fromConfig(_) {
+    return new GzipCodec();
+  }
+  encode(_bytes3) {
+    throw new Error("Gzip encoding is not enabled by default. Please register a custom codec with `numcodecs/gzip`.");
+  }
+  async decode(bytes) {
+    const buffer2 = await decompress(bytes, { format: "gzip" });
+    return new Uint8Array(buffer2);
+  }
+}
 function throw_on_nan_replacer$1(_key, value2) {
   assert$4(!Number.isNaN(value2), "JsonCodec allow_nan is false but NaN was encountered during encoding.");
   assert$4(value2 !== Number.POSITIVE_INFINITY, "JsonCodec allow_nan is false but Infinity was encountered during encoding.");
@@ -249042,8 +249101,23 @@ let VLenUTF8$1 = (_i = class {
     return { data: data2, shape: __privateGet(this, _shape2), stride: __privateGet(this, _strides) };
   }
 }, _shape2 = new WeakMap(), _strides = new WeakMap(), _i);
+class ZlibCodec {
+  constructor() {
+    this.kind = "bytes_to_bytes";
+  }
+  static fromConfig(_) {
+    return new ZlibCodec();
+  }
+  encode(_bytes3) {
+    throw new Error("Zlib encoding is not enabled by default. Please register a codec with `numcodecs/zlib`.");
+  }
+  async decode(bytes) {
+    const buffer2 = await decompress(bytes, { format: "deflate" });
+    return new Uint8Array(buffer2);
+  }
+}
 function create_default_registry$1() {
-  return (/* @__PURE__ */ new Map()).set("blosc", () => import("./blosc-B8fjEpk7.js").then((m2) => m2.default)).set("gzip", () => import("./gzip-BcpOCWcu.js").then((m2) => m2.default)).set("lz4", () => import("./lz4-C9lm_i9S.js").then((m2) => m2.default)).set("zlib", () => import("./zlib-ZTk3sZPP.js").then((m2) => m2.default)).set("zstd", () => import("./zstd-y75FARxZ.js").then((m2) => m2.default)).set("transpose", () => TransposeCodec$1).set("bytes", () => BytesCodec$1).set("crc32c", () => Crc32cCodec$1).set("vlen-utf8", () => VLenUTF8$1).set("json2", () => JsonCodec$1).set("bitround", () => BitroundCodec);
+  return (/* @__PURE__ */ new Map()).set("blosc", () => import("./blosc-B8fjEpk7.js").then((m2) => m2.default)).set("lz4", () => import("./lz4-C9lm_i9S.js").then((m2) => m2.default)).set("zstd", () => import("./zstd-y75FARxZ.js").then((m2) => m2.default)).set("gzip", () => GzipCodec).set("zlib", () => ZlibCodec).set("transpose", () => TransposeCodec$1).set("bytes", () => BytesCodec$1).set("crc32c", () => Crc32cCodec$1).set("vlen-utf8", () => VLenUTF8$1).set("json2", () => JsonCodec$1).set("bitround", () => BitroundCodec);
 }
 const registry$1 = create_default_registry$1();
 function create_codec_pipeline$1(chunk_metadata) {
@@ -249780,7 +249854,7 @@ function uri2href(url) {
   }
   throw Error(`Protocol not supported, got: ${JSON.stringify(protocol)}`);
 }
-function fetch_range(url, offset2, length2, opts2 = {}) {
+function fetch_range$1(url, offset2, length2, opts2 = {}) {
   if (offset2 !== void 0 && length2 !== void 0) {
     opts2 = {
       ...opts2,
@@ -249792,7 +249866,7 @@ function fetch_range(url, offset2, length2, opts2 = {}) {
   }
   return fetch(url, opts2);
 }
-function merge_init(storeOverrides, requestOverrides) {
+function merge_init$1(storeOverrides, requestOverrides) {
   return {
     ...storeOverrides,
     ...requestOverrides,
@@ -249806,7 +249880,7 @@ function assert$3(expression2, msg = "") {
   if (!expression2)
     throw new Error(msg);
 }
-function resolve$1(root2, path2) {
+function resolve$2(root2, path2) {
   const base2 = typeof root2 === "string" ? new URL(root2) : root2;
   if (!base2.pathname.endsWith("/")) {
     base2.pathname += "/";
@@ -249815,7 +249889,7 @@ function resolve$1(root2, path2) {
   resolved.search = base2.search;
   return resolved;
 }
-async function handle_response(response) {
+async function handle_response$1(response) {
   if (response.status === 404) {
     return void 0;
   }
@@ -249824,7 +249898,7 @@ async function handle_response(response) {
   }
   throw new Error(`Unexpected response status ${response.status} ${response.statusText}`);
 }
-async function fetch_suffix(url, suffix_length, init2, use_suffix_request) {
+async function fetch_suffix$1(url, suffix_length, init2, use_suffix_request) {
   if (use_suffix_request) {
     return fetch(url, {
       ...init2,
@@ -249837,9 +249911,9 @@ async function fetch_suffix(url, suffix_length, init2, use_suffix_request) {
   }
   let content_length = response.headers.get("Content-Length");
   let length2 = Number(content_length);
-  return fetch_range(url, length2 - suffix_length, length2, init2);
+  return fetch_range$1(url, length2 - suffix_length, length2, init2);
 }
-class FetchStore {
+let FetchStore$1 = (_l = class {
   constructor(url, options = {}) {
     __privateAdd(this, _FetchStore_instances);
     __privateAdd(this, _overrides);
@@ -249849,28 +249923,24 @@ class FetchStore {
     __privateSet(this, _use_suffix_request, options.useSuffixRequest ?? false);
   }
   async get(key2, options = {}) {
-    let href2 = resolve$1(this.url, key2).href;
+    let href2 = resolve$2(this.url, key2).href;
     let response = await fetch(href2, __privateMethod(this, _FetchStore_instances, merge_init_fn).call(this, options));
-    return handle_response(response);
+    return handle_response$1(response);
   }
   async getRange(key2, range2, options = {}) {
-    let url = resolve$1(this.url, key2);
+    let url = resolve$2(this.url, key2);
     let init2 = __privateMethod(this, _FetchStore_instances, merge_init_fn).call(this, options);
     let response;
     if ("suffixLength" in range2) {
-      response = await fetch_suffix(url, range2.suffixLength, init2, __privateGet(this, _use_suffix_request));
+      response = await fetch_suffix$1(url, range2.suffixLength, init2, __privateGet(this, _use_suffix_request));
     } else {
-      response = await fetch_range(url, range2.offset, range2.length, init2);
+      response = await fetch_range$1(url, range2.offset, range2.length, init2);
     }
-    return handle_response(response);
+    return handle_response$1(response);
   }
-}
-_overrides = new WeakMap();
-_use_suffix_request = new WeakMap();
-_FetchStore_instances = new WeakSet();
-merge_init_fn = function(overrides) {
-  return merge_init(__privateGet(this, _overrides), overrides);
-};
+}, _overrides = new WeakMap(), _use_suffix_request = new WeakMap(), _FetchStore_instances = new WeakSet(), merge_init_fn = function(overrides) {
+  return merge_init$1(__privateGet(this, _overrides), overrides);
+}, _l);
 function getV2DataType(dtype) {
   const mapping = {
     int8: "|i1",
@@ -250623,11 +250693,11 @@ async function readEntryDataHeader(reader, rawEntry) {
   const fileNameLength = getUint16LE(buffer2, 26);
   const extraFieldLength = getUint16LE(buffer2, 28);
   const localFileHeaderEnd = rawEntry.relativeOffsetOfLocalHeader + buffer2.length + fileNameLength + extraFieldLength;
-  let decompress;
+  let decompress2;
   if (rawEntry.compressionMethod === 0) {
-    decompress = false;
+    decompress2 = false;
   } else if (rawEntry.compressionMethod === 8) {
-    decompress = true;
+    decompress2 = true;
   } else {
     throw new Error(`unsupported compression method: ${rawEntry.compressionMethod}`);
   }
@@ -250639,13 +250709,13 @@ async function readEntryDataHeader(reader, rawEntry) {
     }
   }
   return {
-    decompress,
+    decompress: decompress2,
     fileDataStart
   };
 }
 async function readEntryDataAsArrayBuffer(reader, rawEntry) {
-  const { decompress, fileDataStart } = await readEntryDataHeader(reader, rawEntry);
-  if (!decompress) {
+  const { decompress: decompress2, fileDataStart } = await readEntryDataHeader(reader, rawEntry);
+  if (!decompress2) {
     const dataView = await readAs(reader, fileDataStart, rawEntry.compressedSize);
     return isTypedArraySameAsArrayBuffer(dataView) ? dataView.buffer : dataView.slice().buffer;
   }
@@ -250654,8 +250724,8 @@ async function readEntryDataAsArrayBuffer(reader, rawEntry) {
   return result;
 }
 async function readEntryDataAsBlob(reader, rawEntry, type2) {
-  const { decompress, fileDataStart } = await readEntryDataHeader(reader, rawEntry);
-  if (!decompress) {
+  const { decompress: decompress2, fileDataStart } = await readEntryDataHeader(reader, rawEntry);
+  if (!decompress2) {
     const typedArrayOrBlob2 = await readAsBlobOrTypedArray(reader, fileDataStart, rawEntry.compressedSize, type2);
     if (isBlob(typedArrayOrBlob2)) {
       return typedArrayOrBlob2;
@@ -250735,7 +250805,7 @@ class HTTPRangeReader {
     if (size2 === 0) {
       return new Uint8Array(0);
     }
-    const req = await fetch_range(this.url, offset2, size2, __privateGet(this, _overrides2));
+    const req = await fetch_range$1(this.url, offset2, size2, __privateGet(this, _overrides2));
     assert$3(req.ok, `failed http request ${this.url}, status: ${req.status} offset: ${offset2} size: ${size2}: ${req.statusText}`);
     return new Uint8Array(await req.arrayBuffer());
   }
@@ -251001,7 +251071,7 @@ const _ReferenceStore = class _ReferenceStore {
     if (!url) {
       throw Error(`No url for key ${key2}, and no target url provided.`);
     }
-    let res = await fetch_range(uri2href(url), offset2, size2, merge_init(__privateGet(this, _overrides3), opts2));
+    let res = await fetch_range$1(uri2href(url), offset2, size2, merge_init$1(__privateGet(this, _overrides3), opts2));
     if (res.status === 200 || res.status === 206) {
       return new Uint8Array(await res.arrayBuffer());
     }
@@ -251020,7 +251090,7 @@ _refs = new WeakMap();
 _opts = new WeakMap();
 _overrides3 = new WeakMap();
 let ReferenceStore = _ReferenceStore;
-class RelaxedFetchStore extends FetchStore {
+class RelaxedFetchStore extends FetchStore$1 {
   // This allows returning `undefined` for 403 responses,
   // as opposed to completely erroring.
   // Needed due to https://github.com/manzt/zarrita.js/pull/212
@@ -253703,7 +253773,7 @@ class ErrorBoundary extends React__default.Component {
   }
 }
 const LazySpatialThree = React__default.lazy(async () => {
-  const { SpatialWrapper: SpatialWrapper2 } = await import("./index-C5TlHik4.js");
+  const { SpatialWrapper: SpatialWrapper2 } = await import("./index-Sx2LvLG6.js");
   return { default: SpatialWrapper2 };
 });
 const SpatialThreeAdapter = React__default.forwardRef((props, ref2) => jsxRuntimeExports.jsx("div", { ref: ref2, style: { width: "100%", height: "100%" }, children: jsxRuntimeExports.jsx(ErrorBoundary, { children: jsxRuntimeExports.jsx(Suspense, { fallback: jsxRuntimeExports.jsx("div", { children: "Loading..." }), children: jsxRuntimeExports.jsx(LazySpatialThree, { ...props }) }) }) }));
@@ -263512,7 +263582,7 @@ function shouldThrowError(throwOnError, params2) {
   }
   return !!throwOnError;
 }
-var FocusManager = (_l2 = class extends Subscribable {
+var FocusManager = (_m2 = class extends Subscribable {
   constructor() {
     super();
     __privateAdd(this, _focused);
@@ -263573,9 +263643,9 @@ var FocusManager = (_l2 = class extends Subscribable {
     }
     return ((_a3 = globalThis.document) == null ? void 0 : _a3.visibilityState) !== "hidden";
   }
-}, _focused = new WeakMap(), _cleanup = new WeakMap(), _setup = new WeakMap(), _l2);
+}, _focused = new WeakMap(), _cleanup = new WeakMap(), _setup = new WeakMap(), _m2);
 var focusManager = new FocusManager();
-var OnlineManager = (_m2 = class extends Subscribable {
+var OnlineManager = (_n = class extends Subscribable {
   constructor() {
     super();
     __privateAdd(this, _online, true);
@@ -263625,7 +263695,7 @@ var OnlineManager = (_m2 = class extends Subscribable {
   isOnline() {
     return __privateGet(this, _online);
   }
-}, _online = new WeakMap(), _cleanup2 = new WeakMap(), _setup2 = new WeakMap(), _m2);
+}, _online = new WeakMap(), _cleanup2 = new WeakMap(), _setup2 = new WeakMap(), _n);
 var onlineManager = new OnlineManager();
 function pendingThenable() {
   let resolve2;
@@ -263750,7 +263820,7 @@ function fetchState(data2, options) {
     }
   };
 }
-var QueryObserver = (_n = class extends Subscribable {
+var QueryObserver = (_o2 = class extends Subscribable {
   constructor(client, options) {
     super();
     __privateAdd(this, _QueryObserver_instances);
@@ -264160,7 +264230,7 @@ var QueryObserver = (_n = class extends Subscribable {
       type: "observerResultsUpdated"
     });
   });
-}, _n);
+}, _o2);
 function shouldLoadOnMount(query, options) {
   return resolveEnabled(options.enabled, query) !== false && query.state.data === void 0 && !(query.state.status === "error" && options.retryOnMount === false);
 }
@@ -264195,7 +264265,7 @@ function replaceAt(array2, index2, value2) {
   copy2[index2] = value2;
   return copy2;
 }
-var QueriesObserver = (_o2 = class extends Subscribable {
+var QueriesObserver = (_p2 = class extends Subscribable {
   constructor(client, queries, options) {
     super();
     __privateAdd(this, _QueriesObserver_instances);
@@ -264368,7 +264438,7 @@ var QueriesObserver = (_o2 = class extends Subscribable {
       });
     }
   }
-}, _o2);
+}, _p2);
 var QueryClientContext = React.createContext(
   void 0
 );
@@ -266053,7 +266123,7 @@ class Location2 {
 function root(store) {
   return new Location2(store ?? /* @__PURE__ */ new Map());
 }
-let Group$2 = (_p = class extends Location2 {
+let Group$2 = (_q = class extends Location2 {
   constructor(store, path2, metadata2) {
     super(store, path2);
     __privateAdd(this, _metadata3);
@@ -266063,7 +266133,7 @@ let Group$2 = (_p = class extends Location2 {
   get attrs() {
     return __privateGet(this, _metadata3).attributes;
   }
-}, _metadata3 = new WeakMap(), _p);
+}, _metadata3 = new WeakMap(), _q);
 const CONTEXT_MARKER = Symbol("zarrita.context");
 function get_context(obj) {
   return obj[CONTEXT_MARKER];
@@ -266112,7 +266182,7 @@ function create_context(location, metadata2) {
     }
   };
 }
-let Array$1 = (_q = class extends (_a$4 = Location2, _a$4) {
+let Array$1 = (_r = class extends (_a$4 = Location2, _a$4) {
   constructor(store, path2, metadata2) {
     super(store, path2);
     __privateAdd(this, _metadata4);
@@ -266170,7 +266240,7 @@ let Array$1 = (_q = class extends (_a$4 = Location2, _a$4) {
   is(query) {
     return is_dtype(this.dtype, query);
   }
-}, _metadata4 = new WeakMap(), _q);
+}, _metadata4 = new WeakMap(), _r);
 let VERSION_COUNTER = create_version_counter();
 function create_version_counter() {
   let version_counts = /* @__PURE__ */ new WeakMap();
@@ -266653,6 +266723,93 @@ function set_from_chunk_binary(dest, src, bytes_per_element2, projections2) {
     }, bytes_per_element2, projs);
   }
 }
+function fetch_range(url, offset2, length2, opts2 = {}) {
+  if (offset2 !== void 0 && length2 !== void 0) {
+    opts2 = {
+      ...opts2,
+      headers: {
+        ...opts2.headers,
+        Range: `bytes=${offset2}-${offset2 + length2 - 1}`
+      }
+    };
+  }
+  return fetch(url, opts2);
+}
+function merge_init(storeOverrides, requestOverrides) {
+  return {
+    ...storeOverrides,
+    ...requestOverrides,
+    headers: {
+      ...storeOverrides.headers,
+      ...requestOverrides.headers
+    }
+  };
+}
+function resolve$1(root2, path2) {
+  const base2 = typeof root2 === "string" ? new URL(root2) : root2;
+  if (!base2.pathname.endsWith("/")) {
+    base2.pathname += "/";
+  }
+  const resolved = new URL(path2.slice(1), base2);
+  resolved.search = base2.search;
+  return resolved;
+}
+async function handle_response(response) {
+  if (response.status === 404) {
+    return void 0;
+  }
+  if (response.status === 200 || response.status === 206) {
+    return new Uint8Array(await response.arrayBuffer());
+  }
+  throw new Error(`Unexpected response status ${response.status} ${response.statusText}`);
+}
+async function fetch_suffix(url, suffix_length, init2, use_suffix_request) {
+  if (use_suffix_request) {
+    return fetch(url, {
+      ...init2,
+      headers: { ...init2.headers, Range: `bytes=-${suffix_length}` }
+    });
+  }
+  let response = await fetch(url, { ...init2, method: "HEAD" });
+  if (!response.ok) {
+    return response;
+  }
+  let content_length = response.headers.get("Content-Length");
+  let length2 = Number(content_length);
+  return fetch_range(url, length2 - suffix_length, length2, init2);
+}
+class FetchStore {
+  constructor(url, options = {}) {
+    __privateAdd(this, _FetchStore_instances2);
+    __privateAdd(this, _overrides4);
+    __privateAdd(this, _use_suffix_request2);
+    this.url = url;
+    __privateSet(this, _overrides4, options.overrides ?? {});
+    __privateSet(this, _use_suffix_request2, options.useSuffixRequest ?? false);
+  }
+  async get(key2, options = {}) {
+    let href2 = resolve$1(this.url, key2).href;
+    let response = await fetch(href2, __privateMethod(this, _FetchStore_instances2, merge_init_fn2).call(this, options));
+    return handle_response(response);
+  }
+  async getRange(key2, range2, options = {}) {
+    let url = resolve$1(this.url, key2);
+    let init2 = __privateMethod(this, _FetchStore_instances2, merge_init_fn2).call(this, options);
+    let response;
+    if ("suffixLength" in range2) {
+      response = await fetch_suffix(url, range2.suffixLength, init2, __privateGet(this, _use_suffix_request2));
+    } else {
+      response = await fetch_range(url, range2.offset, range2.length, init2);
+    }
+    return handle_response(response);
+  }
+}
+_overrides4 = new WeakMap();
+_use_suffix_request2 = new WeakMap();
+_FetchStore_instances2 = new WeakSet();
+merge_init_fn2 = function(overrides) {
+  return merge_init(__privateGet(this, _overrides4), overrides);
+};
 function multivecChunksToTileDenseArray(chunks, tileShape, isRow) {
   const fullTileLength = isRow ? tileShape[1] : tileShape[0] * tileShape[1];
   const fullTileArray = new Float32Array(fullTileLength);
@@ -266871,7 +267028,7 @@ function HiglassGlobalStyles(props) {
 }
 register({ dataFetcher: ZarrMultivecDataFetcher_default, config: ZarrMultivecDataFetcher_default.config }, { pluginType: "dataFetcher" });
 const LazyHiGlassComponent = React__default.lazy(async () => {
-  const { HiGlassComponent } = await import("./higlass-C-jSScTq.js");
+  const { HiGlassComponent } = await import("./higlass-Cm-4roQO.js");
   return { default: HiGlassComponent };
 });
 const HG_SIZE = 800;
@@ -269808,7 +269965,7 @@ function NeuroglancerGlobalStyles(props) {
   const { classes: classes2 } = props;
   return jsxRuntimeExports.jsxs(jsxRuntimeExports.Fragment, { children: [jsxRuntimeExports.jsx(GlobalStyles$3, { styles: globalNeuroglancerCss }), jsxRuntimeExports.jsx(ScopedGlobalStyles, { styles: globalNeuroglancerStyles, parentClassName: classes2.neuroglancerWrapper })] });
 }
-const LazyReactNeuroglancer = React__default.lazy(() => import("./ReactNeuroglancer-CKMORRgM.js"));
+const LazyReactNeuroglancer = React__default.lazy(() => import("./ReactNeuroglancer-Cdyy6KYr.js"));
 function createWorker() {
   return new WorkerFactory();
 }
@@ -317005,7 +317162,7 @@ function assembleScalesForModel(model) {
       return scales2;
     }
     const scale2 = scaleComponent.combine();
-    const { name: name2, type: type2, selectionExtent, domains: _d3, range: _r2, reverse: reverse2 } = scale2, otherScaleProps = __rest$7(scale2, ["name", "type", "selectionExtent", "domains", "range", "reverse"]);
+    const { name: name2, type: type2, selectionExtent, domains: _d3, range: _r3, reverse: reverse2 } = scale2, otherScaleProps = __rest$7(scale2, ["name", "type", "selectionExtent", "domains", "range", "reverse"]);
     const range2 = assembleScaleRange(scale2.range, name2, channel, model);
     const domain2 = assembleDomain(model, channel);
     const domainRaw = selectionExtent ? assembleSelectionScaleDomain(model, selectionExtent, scaleComponent, domain2) : null;
@@ -333092,7 +333249,7 @@ class BN {
     return BN.new(num, isSigned);
   }
 }
-var _a$3, _b, _c2, _d2, _e2, _f2, _g2, _h2, _j2, _k2, _l, _m, _o, _p2, _q$1, _r, _s, _t, _u, _v, _w, _x$1;
+var _a$3, _b, _c2, _d2, _e2, _f2, _g2, _h2, _j2, _k2, _l2, _m, _o, _p, _q$1, _r2, _s, _t, _u, _v, _w, _x$1;
 class DataType2 {
   /** @nocollapse */
   static isNull(x2) {
@@ -333367,8 +333524,8 @@ class Date_ extends DataType2 {
     return this.unit === DateUnit.DAY ? Int32Array : BigInt64Array;
   }
 }
-_l = Symbol.toStringTag;
-Date_[_l] = ((proto2) => {
+_l2 = Symbol.toStringTag;
+Date_[_l2] = ((proto2) => {
   proto2.unit = null;
   return proto2[Symbol.toStringTag] = "Date";
 })(Date_.prototype);
@@ -333423,8 +333580,8 @@ class Interval_ extends DataType2 {
     return `Interval<${IntervalUnit[this.unit]}>`;
   }
 }
-_p2 = Symbol.toStringTag;
-Interval_[_p2] = ((proto2) => {
+_p = Symbol.toStringTag;
+Interval_[_p] = ((proto2) => {
   proto2.unit = null;
   proto2.ArrayType = Int32Array;
   return proto2[Symbol.toStringTag] = "Interval";
@@ -333462,8 +333619,8 @@ class List3 extends DataType2 {
     return this.valueType.ArrayType;
   }
 }
-_r = Symbol.toStringTag;
-List3[_r] = ((proto2) => {
+_r2 = Symbol.toStringTag;
+List3[_r2] = ((proto2) => {
   proto2.children = null;
   return proto2[Symbol.toStringTag] = "List";
 })(List3.prototype);
@@ -380440,6 +380597,23 @@ function expandAnndataZarr(fileDef) {
         featureValueType: baseFileDef.coordinationValues.featureValueType
       }
     }] : [],
+    // obsFeatureColumns
+    ...options.obsFeatureColumns ? [{
+      ...baseFileDef,
+      fileType: getFileType(FileType$1.OBS_FEATURE_COLUMNS_ANNDATA_ZARR),
+      options: {
+        ...sharedOptions,
+        obsFeatureColumns: options.obsFeatureColumns
+      },
+      coordinationValues: {
+        ...extraCoordinationValues,
+        obsType: baseFileDef.coordinationValues.obsType,
+        // TODO: allow providing a featureType that is scoped to each `obsFeatureColumns` item
+        // (rather than always using the featureType from the file definition).
+        featureType: baseFileDef.coordinationValues.featureType,
+        featureValueType: baseFileDef.coordinationValues.featureValueType
+      }
+    }] : [],
     // obsSets
     ...options.obsSets ? [{
       ...baseFileDef,
@@ -380611,6 +380785,7 @@ function expandAnndataZarr(fileDef) {
 }
 function expandSpatialdataZarr(fileDef) {
   var _a3, _b3, _c3;
+  const getFileType = createGetFileType(fileDef.fileType);
   const baseFileDef = {
     url: fileDef.url,
     requestInit: fileDef.requestInit,
@@ -380634,7 +380809,7 @@ function expandSpatialdataZarr(fileDef) {
     // TODO: handle multiple obsFeatureMatrix?
     ...options.obsFeatureMatrix ? [{
       ...baseFileDef,
-      fileType: FileType$1.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR,
+      fileType: getFileType(FileType$1.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR),
       options: options.obsFeatureMatrix,
       coordinationValues: {
         ...extraCoordinationValues,
@@ -380647,7 +380822,7 @@ function expandSpatialdataZarr(fileDef) {
     // TODO: handle multiple obsSets?
     ...options.obsSets ? [{
       ...baseFileDef,
-      fileType: FileType$1.OBS_SETS_SPATIALDATA_ZARR,
+      fileType: getFileType(FileType$1.OBS_SETS_SPATIALDATA_ZARR),
       options: options.obsSets,
       coordinationValues: {
         ...extraCoordinationValues,
@@ -380658,7 +380833,7 @@ function expandSpatialdataZarr(fileDef) {
     // TODO: handle multiple obsSpots?
     ...options.obsSpots ? [{
       ...baseFileDef,
-      fileType: FileType$1.OBS_SPOTS_SPATIALDATA_ZARR,
+      fileType: getFileType(FileType$1.OBS_SPOTS_SPATIALDATA_ZARR),
       options: {
         coordinateSystem: defaultCoordinateSystem,
         ...options.obsSpots
@@ -380677,7 +380852,7 @@ function expandSpatialdataZarr(fileDef) {
     // TODO: handle multiple images
     ...options.image ? [{
       ...baseFileDef,
-      fileType: FileType$1.IMAGE_SPATIALDATA_ZARR,
+      fileType: getFileType(FileType$1.IMAGE_SPATIALDATA_ZARR),
       options: {
         coordinateSystem: defaultCoordinateSystem,
         ...options.image
@@ -380692,7 +380867,7 @@ function expandSpatialdataZarr(fileDef) {
     // TODO: handle multiple labels?
     ...options.labels ? [{
       ...baseFileDef,
-      fileType: FileType$1.LABELS_SPATIALDATA_ZARR,
+      fileType: getFileType(FileType$1.LABELS_SPATIALDATA_ZARR),
       options: {
         coordinateSystem: defaultCoordinateSystem,
         ...options.labels
@@ -381105,6 +381280,7 @@ const baseJointFileTypes = [
   new PluginJointFileType(FileType$1.ANNDATA_ZARR_ZIP, expandAnndataZarr, anndataZarrSchema),
   new PluginJointFileType(FileType$1.ANNDATA_H5AD, expandAnndataZarr, anndataH5adSchema),
   new PluginJointFileType(FileType$1.SPATIALDATA_ZARR, expandSpatialdataZarr, spatialdataZarrSchema),
+  new PluginJointFileType(FileType$1.SPATIALDATA_ZARR_ZIP, expandSpatialdataZarr, spatialdataZarrSchema),
   // For legacy file types:
   new PluginJointFileType(FileType$1.ANNDATA_CELLS_ZARR, expandAnndataCellsZarr, anndataCellsZarrSchema),
   new PluginJointFileType(FileType$1.ANNDATA_CELL_SETS_ZARR, expandAnndataCellSetsZarr, anndataCellSetsZarrSchema),

package/dist/{index-C5TlHik4.js → index-Sx2LvLG6.js}

@@ -1,4 +1,4 @@
-import { g as getDefaultExportFromCjs, R as Raycaster, O as OrthographicCamera, P as PerspectiveCamera, S as Scene, a as PCFSoftShadowMap, V as VSMShadowMap, b as PCFShadowMap, B as BasicShadowMap, N as NoToneMapping, A as ACESFilmicToneMapping, c as Vector3, d as Vector2, C as Clock, W as WebGLRenderer, e as Camera, f as BufferGeometry, M as Material, L as Layers, T as Texture, h as RGBAFormat, U as UnsignedByteType, i as Color, _ as _extends, j as THREE, G as Group, k as Matrix4, l as TrianglesDrawMode, m as TriangleFanDrawMode, n as TriangleStripDrawMode, o as REVISION, E as EventDispatcher, p as MOUSE, q as TOUCH, r as Spherical, Q as Quaternion, s as Ray$1, t as Plane, u as Loader, v as LoaderUtils, F as FileLoader, w as MeshPhysicalMaterial, x as SpotLight, y as PointLight, D as DirectionalLight, I as InstancedMesh, z as Object3D, H as TextureLoader, J as ImageBitmapLoader, K as BufferAttribute, X as InterleavedBuffer, Y as LinearMipmapLinearFilter, Z as NearestMipmapLinearFilter, $ as LinearMipmapNearestFilter, a0 as NearestMipmapNearestFilter, a1 as LinearFilter, a2 as NearestFilter, a3 as RepeatWrapping, a4 as MirroredRepeatWrapping, a5 as ClampToEdgeWrapping, a6 as PointsMaterial, a7 as LineBasicMaterial, a8 as MeshStandardMaterial, a9 as DoubleSide, aa as MeshBasicMaterial, ab as PropertyBinding, ac as SkinnedMesh, ad as Mesh, ae as LineSegments, af as Line$1, ag as LineLoop, ah as Points, ai as MathUtils, aj as Skeleton, ak as InterpolateDiscrete, al as InterpolateLinear, am as AnimationClip, an as Bone, ao as InterleavedBufferAttribute, ap as VectorKeyframeTrack, aq as QuaternionKeyframeTrack, ar as NumberKeyframeTrack, as as FrontSide, at as Interpolant, au as Box3, av as Sphere, aw as InstancedBufferGeometry, ax as Float32BufferAttribute, ay as InstancedInterleavedBuffer, az as WireframeGeometry, aA as ShaderMaterial, aB as UniformsUtils, aC as UniformsLib, aD as Vector4, aE as Line3, aF as SphereGeometry, aG as Triangle, aH as BackSide, aI as jsxRuntimeExports, aJ as Matrix3, aK as CoordinationType, aL as Data3DTexture, aM as RedFormat, aN as FloatType, aO as getImageSize } from "./index-CbSllawi.js";
+import { g as getDefaultExportFromCjs, R as Raycaster, O as OrthographicCamera, P as PerspectiveCamera, S as Scene, a as PCFSoftShadowMap, V as VSMShadowMap, b as PCFShadowMap, B as BasicShadowMap, N as NoToneMapping, A as ACESFilmicToneMapping, c as Vector3, d as Vector2, C as Clock, W as WebGLRenderer, e as Camera, f as BufferGeometry, M as Material, L as Layers, T as Texture, h as RGBAFormat, U as UnsignedByteType, i as Color, _ as _extends, j as THREE, G as Group, k as Matrix4, l as TrianglesDrawMode, m as TriangleFanDrawMode, n as TriangleStripDrawMode, o as REVISION, E as EventDispatcher, p as MOUSE, q as TOUCH, r as Spherical, Q as Quaternion, s as Ray$1, t as Plane, u as Loader, v as LoaderUtils, F as FileLoader, w as MeshPhysicalMaterial, x as SpotLight, y as PointLight, D as DirectionalLight, I as InstancedMesh, z as Object3D, H as TextureLoader, J as ImageBitmapLoader, K as BufferAttribute, X as InterleavedBuffer, Y as LinearMipmapLinearFilter, Z as NearestMipmapLinearFilter, $ as LinearMipmapNearestFilter, a0 as NearestMipmapNearestFilter, a1 as LinearFilter, a2 as NearestFilter, a3 as RepeatWrapping, a4 as MirroredRepeatWrapping, a5 as ClampToEdgeWrapping, a6 as PointsMaterial, a7 as LineBasicMaterial, a8 as MeshStandardMaterial, a9 as DoubleSide, aa as MeshBasicMaterial, ab as PropertyBinding, ac as SkinnedMesh, ad as Mesh, ae as LineSegments, af as Line$1, ag as LineLoop, ah as Points, ai as MathUtils, aj as Skeleton, ak as InterpolateDiscrete, al as InterpolateLinear, am as AnimationClip, an as Bone, ao as InterleavedBufferAttribute, ap as VectorKeyframeTrack, aq as QuaternionKeyframeTrack, ar as NumberKeyframeTrack, as as FrontSide, at as Interpolant, au as Box3, av as Sphere, aw as InstancedBufferGeometry, ax as Float32BufferAttribute, ay as InstancedInterleavedBuffer, az as WireframeGeometry, aA as ShaderMaterial, aB as UniformsUtils, aC as UniformsLib, aD as Vector4, aE as Line3, aF as SphereGeometry, aG as Triangle, aH as BackSide, aI as jsxRuntimeExports, aJ as Matrix3, aK as CoordinationType, aL as Data3DTexture, aM as RedFormat, aN as FloatType, aO as getImageSize } from "./index-KG6yVDeM.js";
 import * as React from "react";
 import React__default, { useReducer, useRef, useEffect, useLayoutEffect, useDebugValue, useState, useMemo, forwardRef } from "react";
 var constants = { exports: {} };
@@ -23637,7 +23637,7 @@ const Text = /* @__PURE__ */ React.forwardRef(({
   const {
     Text: TextMeshImpl,
     preloadFont
-  } = suspend(async () => import("./troika-three-text.esm-C71wQV-C.js"), []);
+  } = suspend(async () => import("./troika-three-text.esm-C7mJ9tlO.js"), []);
   const invalidate2 = useThree(({
     invalidate: invalidate3
   }) => invalidate3);

package/dist/index.js

@@ -1,4 +1,4 @@
-import { bL, bJ, bH, bK, bI, bG, bM } from "./index-CbSllawi.js";
+import { bL, bJ, bH, bK, bI, bG, bM } from "./index-KG6yVDeM.js";
 import { useComplexCoordination, useComplexCoordinationSecondary, useCoordination, useCoordinationScopes, useCoordinationScopesBy, useGridItemSize, useMultiCoordinationScopesNonNull, useMultiCoordinationScopesSecondaryNonNull, usePageModeView } from "@vitessce/vit-s";
 export {
   bL as PluginAsyncFunction,

package/dist/{jpeg-DJyIIvO7.js → jpeg-Bh1wXUXT.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-CbSllawi.js";
+import { aP as BaseDecoder } from "./index-KG6yVDeM.js";
 const dctZigZag = new Int32Array([
   0,
   1,

package/dist/{lerc-B0cTVDdb.js → lerc-1WB3uddx.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { g as getDefaultExportFromCjs, aP as BaseDecoder, aQ as LercParameters, aR as LercAddCompression } from "./index-CbSllawi.js";
+import { g as getDefaultExportFromCjs, aP as BaseDecoder, aQ as LercParameters, aR as LercAddCompression } from "./index-KG6yVDeM.js";
 var LercDecode = { exports: {} };
 var hasRequiredLercDecode;
 function requireLercDecode() {

package/dist/{lzw-BWwSMLET.js → lzw-Ct4BzFEq.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-CbSllawi.js";
+import { aP as BaseDecoder } from "./index-KG6yVDeM.js";
 const MIN_BITS = 9;
 const CLEAR_CODE = 256;
 const EOI_CODE = 257;

package/dist/{packbits-CpM-jL5s.js → packbits-BAF4ayoO.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-CbSllawi.js";
+import { aP as BaseDecoder } from "./index-KG6yVDeM.js";
 class PackbitsDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     const dataView = new DataView(buffer);

package/dist/{raw-BnKrggy7.js → raw-CoeHW2Mx.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-CbSllawi.js";
+import { aP as BaseDecoder } from "./index-KG6yVDeM.js";
 class RawDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return buffer;

package/dist/{troika-three-text.esm-C71wQV-C.js → troika-three-text.esm-C7mJ9tlO.js}

@@ -1,4 +1,4 @@
-import { bA as MeshDistanceMaterial, bB as MeshDepthMaterial, bC as RGBADepthPacking, aB as UniformsUtils, bD as ShaderChunk, aw as InstancedBufferGeometry, av as Sphere, au as Box3, aH as BackSide, a9 as DoubleSide, ad as Mesh, as as FrontSide, aa as MeshBasicMaterial, i as Color, c as Vector3, k as Matrix4, d as Vector2, aJ as Matrix3, aD as Vector4, T as Texture, a1 as LinearFilter, bE as PlaneGeometry, f as BufferGeometry, ax as Float32BufferAttribute, bF as InstancedBufferAttribute } from "./index-CbSllawi.js";
+import { bA as MeshDistanceMaterial, bB as MeshDepthMaterial, bC as RGBADepthPacking, aB as UniformsUtils, bD as ShaderChunk, aw as InstancedBufferGeometry, av as Sphere, au as Box3, aH as BackSide, a9 as DoubleSide, ad as Mesh, as as FrontSide, aa as MeshBasicMaterial, i as Color, c as Vector3, k as Matrix4, d as Vector2, aJ as Matrix3, aD as Vector4, T as Texture, a1 as LinearFilter, bE as PlaneGeometry, f as BufferGeometry, ax as Float32BufferAttribute, bF as InstancedBufferAttribute } from "./index-KG6yVDeM.js";
 function workerBootstrap() {
   var modules = /* @__PURE__ */ Object.create(null);
   function registerModule(ref, callback) {

package/dist/{webimage-DkWfOrrK.js → webimage-BxxoMAns.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-CbSllawi.js";
+import { aP as BaseDecoder } from "./index-KG6yVDeM.js";
 class WebImageDecoder extends BaseDecoder {
   constructor() {
     super();

package/dist-tsc/base-plugins.d.ts

@@ -49,6 +49,13 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
         featureFilterPath?: string | undefined;
         initialFeatureFilterPath?: string | undefined;
     }>>;
+    obsFeatureColumns: z.ZodOptional<z.ZodArray<z.ZodObject<{
+        path: z.ZodString;
+    }, "strip", z.ZodTypeAny, {
+        path: string;
+    }, {
+        path: string;
+    }>, "many">>;
     obsSets: z.ZodOptional<z.ZodArray<z.ZodObject<{
         name: z.ZodString;
         path: z.ZodUnion<[z.ZodString, z.ZodArray<z.ZodString, "many">]>;
@@ -146,6 +153,9 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
         featureFilterPath?: string | undefined;
         initialFeatureFilterPath?: string | undefined;
     } | undefined;
+    obsFeatureColumns?: {
+        path: string;
+    }[] | undefined;
     obsSets?: {
         path: (string | string[]) & (string | string[] | undefined);
         name: string;
@@ -195,6 +205,9 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
         featureFilterPath?: string | undefined;
         initialFeatureFilterPath?: string | undefined;
     } | undefined;
+    obsFeatureColumns?: {
+        path: string;
+    }[] | undefined;
     obsSets?: {
         path: (string | string[]) & (string | string[] | undefined);
         name: string;

package/dist-tsc/base-plugins.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"base-plugins.d.ts","sourceRoot":"","sources":["../src/base-plugins.ts"],"names":[],"mappings":"AAWA,OAAO,EACL,cAAc,EACd,mBAAmB,EACnB,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,KAAK,EACV,UAAU,EACV,UAAU,EACX,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,CAAC,EAkDF,MAAM,mBAAmB,CAAC;AAuK3B,eAAO,MAAM,aAAa,kBA8BzB,CAAC;AAEF,eAAO,MAAM,aAAa,wDA2EzB,CAAC;AAEF,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yBA0E7B,CAAD;gCAEmB,CAAC;;;yBAGnB,CAAC;gCAEmB,CAAC;;;;;;;;;;;;;;;;iBAS2D,CAAC;;;;iBAG/E,CAAF;;;;;;;YAKiB,CAAC;;;YAGV,CAAC;;;;;;;YAMP,CAAF;;;YAE0B,CAAC;;;;;;;YAQ3B,CAAC;;;YAEgC,CAAC;;;;;;;;;;;;;;YAShC,CAAJ;;;YAE0B,CAAC;;;;;;;;YAQH,CAAC;;;;YAIG,CAAC;;;;;;;;;;;;;;;;;;;;;;;;yBAaK,CAAC;gCAIhC,CAAC;;;;;;;;iBAUkB,CAAC;;;;YAIrB,CAAA;;;;YAGS,CAAC;;;;YAIY,CAAC;;;;;;;YAOhB,CAAC;;;;YAGR,CAAF;;;;;;;;;;;;;;;;;;;;yBAI+E,CAAC;gCAC1C,CAAC;;;;;;;;iBAGhC,CAAC;;;;YACF,CAAC;;;;YACH,CAAC;;;;YAAkG,CAAC;;;;;;;YAEvC,CAAC;;;;YACK,CAAC;;;;;;;;;;;wBAoE4jC,CAAC;;;wBAA6E,CAAC;;;;;;;;iBAA8Q,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;yBAAkZ,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;yBAA8E,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;;;;;iBAAgR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;;;qBAAygB,CAAC;;;;qBAA2J,CAAC;;;;;;qBAAsN,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;qBAA0K,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;wBAAwL,CAAC;;;;iBAA+F,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;wBAAqJ,CAAC;;;;iBAA+F,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBAvhB78L,CAAC;;;;;qBAGU,CAAC;qBAA4C,CAAC;;;;;;;;;qBAIlD,CAAC;6BACZ,CAAA;;sBAEa,CAAC;;;;;qBAOY,CAAC;qBACK,CAAC;;;;;;;;;qBAa/B,CAAC;6BAEH,CAAC;;;;;;;;;;;;;kBAwBC,CAAC;mBACO,CAAC;gBAEH,CAAC;gBAEd,CAAF;uBACY,CAAC;iBAEX,CAAC;oBACY,CAAC;oBAEb,CAAC;qBACQ,CAAC;;kBAER,CAAC;mBAEC,CAAC;gBAGK,CAAC;gBACA,CAAC;uBAGV,CAAC;iBAGI,CAAC;oBAET,CAAA;oBACgB,CAAC;qBAEV,CAAC;;;;;;gBAMqB,CAAC;sBAE1B,CAAC;;;;;qBAWK,CAAC;qBAEX,CAAD;;;;;;;;;qBAUsB,CAAC;6BAEX,CAAC;;mBAGC,CAAC;kBACR,CAAC;mBAED,CAAC;gBAEQ,CAAC;gBAEF,CAAC;uBAEP,CAAA;iBAAuC,CAAC;oBACd,CAAC;oBACZ,CAAC;qBAA2C,CAAC;;;;;;gBAGiC,CAAC;sBAA0B,CAAC;;;;;qBAGlF,CAAC;qBACxC,CAAC;;;;;;;;;qBAGD,CAAC;6BAAoD,CAAC;;mBACrC,CAAC;kBAAsB,CAAC;mBACtB,CAAC;gBACtB,CAAF;gBACM,CAAC;uBACmB,CAAC;iBAAuC,CAAC;oBAA0C,CAAC;oBAKhG,CAAC;qBACY,CAAC;;;;;;;;;gBAGqB,CAAC;sBACrD,CAAC;;;;;qBAGmC,CAAC;qBACT,CAAC;;;;;;;;;qBAIjB,CAAC;6BAAoD,CAAC;;mBAC9B,CAAC;kBAAsB,CAAC;mBAC3B,CAAC;gBAC9B,CAAC;gBAAsC,CAAC;uBACxB,CAAC;iBACP,CAAC;oBAA0C,CAAC;oBAC3B,CAAA;qBACX,CAAC;;;;;;;;;;;gBAIF,CAAC;sBAA0B,CAAC;;;;;qBAGS,CAAC;qBACtC,CAAC;;;;;;;;;qBAMH,CAAC;6BAAoD,CAAC;;mBACzC,CAAC;kBAAsB,CAAC;mBAAyC,CAAC;gBAC1E,CAAC;gBAAsC,CAAC;uBAC/D,CAAA;iBAAuC,CAAC;oBAA0C,CAAC;oBACvE,CAAC;qBAA2C,CAAC;;;;;;;;;;;;;;OAyF1D,CAAC;AAIF,eAAO,MAAM,qBAAqB;;;;;;;;aA/VtB,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cAEF,CAAD;eAEU,CAAC;;;;;;;;;;;;;;;;;;;aAiB0B,CAAC;cACjB,CAAC;eAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;aAlEnD,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cAEF,CAAD;eAEU,CAAC;;;;;;;;;;;;;;;;;;;aAiB0B,CAAC;cACjB,CAAC;eAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kzBA8gB9D,CAAC;AAEF,eAAO,MAAM,kBAAkB,uBAK9B,CAAC"}

package/dist-tsc/base-plugins.js

@@ -175,6 +175,7 @@ export const baseJointFileTypes = [
     new PluginJointFileType(FileType.ANNDATA_ZARR_ZIP, expandAnndataZarr, anndataZarrSchema),
     new PluginJointFileType(FileType.ANNDATA_H5AD, expandAnndataZarr, anndataH5adSchema),
     new PluginJointFileType(FileType.SPATIALDATA_ZARR, expandSpatialdataZarr, spatialdataZarrSchema),
+    new PluginJointFileType(FileType.SPATIALDATA_ZARR_ZIP, expandSpatialdataZarr, spatialdataZarrSchema),
     // For legacy file types:
     new PluginJointFileType(FileType.ANNDATA_CELLS_ZARR, expandAnndataCellsZarr, anndataCellsZarrSchema),
     new PluginJointFileType(FileType.ANNDATA_CELL_SETS_ZARR, expandAnndataCellSetsZarr, anndataCellSetsZarrSchema),

package/dist-tsc/joint-file-types.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"joint-file-types.d.ts","sourceRoot":"","sources":["../src/joint-file-types.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAC7B,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,mBAAmB,CAAC;AA6B7D,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,SAsO7E;AAED,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC;;;;;;;;UAjQ1E,MAAM;kBACE,GAAG;;;;;;;UADX,MAAM;kBACE,GAAG;;;;;;;UADX,MAAM;kBACE,GAAG;KA+VlB"}

package/dist-tsc/joint-file-types.js

@@ -55,6 +55,23 @@ export function expandAnndataZarr(fileDef) {
                     featureValueType: baseFileDef.coordinationValues.featureValueType,
                 },
             }] : []),
+        // obsFeatureColumns
+        ...(options.obsFeatureColumns ? [{
+                ...baseFileDef,
+                fileType: getFileType(FileType.OBS_FEATURE_COLUMNS_ANNDATA_ZARR),
+                options: {
+                    ...sharedOptions,
+                    obsFeatureColumns: options.obsFeatureColumns,
+                },
+                coordinationValues: {
+                    ...extraCoordinationValues,
+                    obsType: baseFileDef.coordinationValues.obsType,
+                    // TODO: allow providing a featureType that is scoped to each `obsFeatureColumns` item
+                    // (rather than always using the featureType from the file definition).
+                    featureType: baseFileDef.coordinationValues.featureType,
+                    featureValueType: baseFileDef.coordinationValues.featureValueType,
+                },
+            }] : []),
         // obsSets
         ...(options.obsSets ? [{
                 ...baseFileDef,
@@ -225,6 +242,7 @@ export function expandAnndataZarr(fileDef) {
     ];
 }
 export function expandSpatialdataZarr(fileDef) {
+    const getFileType = createGetFileType(fileDef.fileType);
     const baseFileDef = {
         url: fileDef.url,
         requestInit: fileDef.requestInit,
@@ -248,7 +266,7 @@ export function expandSpatialdataZarr(fileDef) {
         // TODO: handle multiple obsFeatureMatrix?
         ...(options.obsFeatureMatrix ? [{
                 ...baseFileDef,
-                fileType: FileType.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR,
+                fileType: getFileType(FileType.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR),
                 options: options.obsFeatureMatrix,
                 coordinationValues: {
                     ...extraCoordinationValues,
@@ -261,7 +279,7 @@ export function expandSpatialdataZarr(fileDef) {
         // TODO: handle multiple obsSets?
         ...(options.obsSets ? [{
                 ...baseFileDef,
-                fileType: FileType.OBS_SETS_SPATIALDATA_ZARR,
+                fileType: getFileType(FileType.OBS_SETS_SPATIALDATA_ZARR),
                 options: options.obsSets,
                 coordinationValues: {
                     ...extraCoordinationValues,
@@ -272,7 +290,7 @@ export function expandSpatialdataZarr(fileDef) {
         // TODO: handle multiple obsSpots?
         ...(options.obsSpots ? [{
                 ...baseFileDef,
-                fileType: FileType.OBS_SPOTS_SPATIALDATA_ZARR,
+                fileType: getFileType(FileType.OBS_SPOTS_SPATIALDATA_ZARR),
                 options: {
                     coordinateSystem: defaultCoordinateSystem,
                     ...options.obsSpots,
@@ -291,7 +309,7 @@ export function expandSpatialdataZarr(fileDef) {
         // TODO: handle multiple images
         ...(options.image ? [{
                 ...baseFileDef,
-                fileType: FileType.IMAGE_SPATIALDATA_ZARR,
+                fileType: getFileType(FileType.IMAGE_SPATIALDATA_ZARR),
                 options: {
                     coordinateSystem: defaultCoordinateSystem,
                     ...options.image,
@@ -306,7 +324,7 @@ export function expandSpatialdataZarr(fileDef) {
         // TODO: handle multiple labels?
         ...(options.labels ? [{
                 ...baseFileDef,
-                fileType: FileType.LABELS_SPATIALDATA_ZARR,
+                fileType: getFileType(FileType.LABELS_SPATIALDATA_ZARR),
                 options: {
                     coordinateSystem: defaultCoordinateSystem,
                     ...options.labels,

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/all",
-  "version": "3.6.3",
+  "version": "3.6.4",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -17,36 +17,36 @@
   ],
   "dependencies": {
     "zod": "^3.21.4",
-    "@vitessce/styles": "3.6.3",
-    "@vitessce/constants-internal": "3.6.3",
-    "@vitessce/abstract": "3.6.3",
-    "@vitessce/csv": "3.6.3",
-    "@vitessce/description": "3.6.3",
-    "@vitessce/feature-list": "3.6.3",
-    "@vitessce/genomic-profiles": "3.6.3",
-    "@vitessce/heatmap": "3.6.3",
-    "@vitessce/glb": "3.6.3",
-    "@vitessce/json": "3.6.3",
-    "@vitessce/layer-controller": "3.6.3",
-    "@vitessce/layer-controller-beta": "3.6.3",
-    "@vitessce/link-controller": "3.6.3",
-    "@vitessce/obs-sets-manager": "3.6.3",
-    "@vitessce/ome-tiff": "3.6.3",
-    "@vitessce/plugins": "3.6.3",
-    "@vitessce/scatterplot-embedding": "3.6.3",
-    "@vitessce/scatterplot-gating": "3.6.3",
-    "@vitessce/schemas": "3.6.3",
-    "@vitessce/spatial": "3.6.3",
-    "@vitessce/spatial-beta": "3.6.3",
-    "@vitessce/statistical-plots": "3.6.3",
-    "@vitessce/status": "3.6.3",
-    "@vitessce/vit-s": "3.6.3",
-    "@vitessce/zarr": "3.6.3",
-    "@vitessce/globals": "3.6.3",
-    "@vitessce/spatial-zarr": "3.6.3",
-    "@vitessce/spatial-three": "3.6.3",
-    "@vitessce/biomarker-select": "3.6.3",
-    "@vitessce/neuroglancer": "3.6.3"
+    "@vitessce/styles": "3.6.4",
+    "@vitessce/constants-internal": "3.6.4",
+    "@vitessce/abstract": "3.6.4",
+    "@vitessce/csv": "3.6.4",
+    "@vitessce/description": "3.6.4",
+    "@vitessce/feature-list": "3.6.4",
+    "@vitessce/genomic-profiles": "3.6.4",
+    "@vitessce/heatmap": "3.6.4",
+    "@vitessce/glb": "3.6.4",
+    "@vitessce/json": "3.6.4",
+    "@vitessce/layer-controller": "3.6.4",
+    "@vitessce/layer-controller-beta": "3.6.4",
+    "@vitessce/link-controller": "3.6.4",
+    "@vitessce/obs-sets-manager": "3.6.4",
+    "@vitessce/ome-tiff": "3.6.4",
+    "@vitessce/plugins": "3.6.4",
+    "@vitessce/scatterplot-embedding": "3.6.4",
+    "@vitessce/scatterplot-gating": "3.6.4",
+    "@vitessce/schemas": "3.6.4",
+    "@vitessce/spatial": "3.6.4",
+    "@vitessce/spatial-beta": "3.6.4",
+    "@vitessce/statistical-plots": "3.6.4",
+    "@vitessce/status": "3.6.4",
+    "@vitessce/vit-s": "3.6.4",
+    "@vitessce/zarr": "3.6.4",
+    "@vitessce/globals": "3.6.4",
+    "@vitessce/spatial-zarr": "3.6.4",
+    "@vitessce/spatial-three": "3.6.4",
+    "@vitessce/biomarker-select": "3.6.4",
+    "@vitessce/neuroglancer": "3.6.4"
   },
   "devDependencies": {
     "@types/react": "^18.0.28",

package/src/base-plugins.ts

@@ -352,6 +352,7 @@ export const baseJointFileTypes = [
   new PluginJointFileType(FileType.ANNDATA_ZARR_ZIP, expandAnndataZarr, anndataZarrSchema),
   new PluginJointFileType(FileType.ANNDATA_H5AD, expandAnndataZarr, anndataH5adSchema),
   new PluginJointFileType(FileType.SPATIALDATA_ZARR, expandSpatialdataZarr, spatialdataZarrSchema),
+  new PluginJointFileType(FileType.SPATIALDATA_ZARR_ZIP, expandSpatialdataZarr, spatialdataZarrSchema),
   // For legacy file types:
   new PluginJointFileType(FileType.ANNDATA_CELLS_ZARR, expandAnndataCellsZarr, anndataCellsZarrSchema),
   new PluginJointFileType(FileType.ANNDATA_CELL_SETS_ZARR, expandAnndataCellSetsZarr, anndataCellSetsZarrSchema),

package/src/joint-file-types.ts

@@ -67,6 +67,23 @@ export function expandAnndataZarr(fileDef: z.infer<typeof latestFileDefSchema>)
         featureValueType: baseFileDef.coordinationValues.featureValueType,
       },
     }] : []),
+    // obsFeatureColumns
+    ...(options.obsFeatureColumns ? [{
+      ...baseFileDef,
+      fileType: getFileType(FileType.OBS_FEATURE_COLUMNS_ANNDATA_ZARR),
+      options: {
+        ...sharedOptions,
+        obsFeatureColumns: options.obsFeatureColumns,
+      },
+      coordinationValues: {
+        ...extraCoordinationValues,
+        obsType: baseFileDef.coordinationValues.obsType,
+        // TODO: allow providing a featureType that is scoped to each `obsFeatureColumns` item
+        // (rather than always using the featureType from the file definition).
+        featureType: baseFileDef.coordinationValues.featureType,
+        featureValueType: baseFileDef.coordinationValues.featureValueType,
+      },
+    }] : []),
     // obsSets
     ...(options.obsSets ? [{
       ...baseFileDef,
@@ -244,6 +261,7 @@ export function expandAnndataZarr(fileDef: z.infer<typeof latestFileDefSchema>)
 }
 
 export function expandSpatialdataZarr(fileDef: z.infer<typeof latestFileDefSchema>) {
+  const getFileType = createGetFileType(fileDef.fileType);
   const baseFileDef: BaseFileDef = {
     url: fileDef.url,
     requestInit: fileDef.requestInit,
@@ -267,7 +285,7 @@ export function expandSpatialdataZarr(fileDef: z.infer<typeof latestFileDefSchem
     // TODO: handle multiple obsFeatureMatrix?
     ...(options.obsFeatureMatrix ? [{
       ...baseFileDef,
-      fileType: FileType.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR,
+      fileType: getFileType(FileType.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR),
       options: options.obsFeatureMatrix,
       coordinationValues: {
         ...extraCoordinationValues,
@@ -280,7 +298,7 @@ export function expandSpatialdataZarr(fileDef: z.infer<typeof latestFileDefSchem
     // TODO: handle multiple obsSets?
     ...(options.obsSets ? [{
       ...baseFileDef,
-      fileType: FileType.OBS_SETS_SPATIALDATA_ZARR,
+      fileType: getFileType(FileType.OBS_SETS_SPATIALDATA_ZARR),
       options: options.obsSets,
       coordinationValues: {
         ...extraCoordinationValues,
@@ -291,7 +309,7 @@ export function expandSpatialdataZarr(fileDef: z.infer<typeof latestFileDefSchem
     // TODO: handle multiple obsSpots?
     ...(options.obsSpots ? [{
       ...baseFileDef,
-      fileType: FileType.OBS_SPOTS_SPATIALDATA_ZARR,
+      fileType: getFileType(FileType.OBS_SPOTS_SPATIALDATA_ZARR),
       options: {
         coordinateSystem: defaultCoordinateSystem,
         ...options.obsSpots,
@@ -310,7 +328,7 @@ export function expandSpatialdataZarr(fileDef: z.infer<typeof latestFileDefSchem
     // TODO: handle multiple images
     ...(options.image ? [{
       ...baseFileDef,
-      fileType: FileType.IMAGE_SPATIALDATA_ZARR,
+      fileType: getFileType(FileType.IMAGE_SPATIALDATA_ZARR),
       options: {
         coordinateSystem: defaultCoordinateSystem,
         ...options.image,
@@ -325,7 +343,7 @@ export function expandSpatialdataZarr(fileDef: z.infer<typeof latestFileDefSchem
     // TODO: handle multiple labels?
     ...(options.labels ? [{
       ...baseFileDef,
-      fileType: FileType.LABELS_SPATIALDATA_ZARR,
+      fileType: getFileType(FileType.LABELS_SPATIALDATA_ZARR),
       options: {
         coordinateSystem: defaultCoordinateSystem,
         ...options.labels,