@vitessce/all 3.6.2 → 3.6.4

package/dist/{index-BLLQzyXB.js → index-Sx2LvLG6.js}

@@ -1,4 +1,4 @@
-import { g as getDefaultExportFromCjs, R as Raycaster, O as OrthographicCamera, P as PerspectiveCamera, S as Scene, a as PCFSoftShadowMap, V as VSMShadowMap, b as PCFShadowMap, B as BasicShadowMap, N as NoToneMapping, A as ACESFilmicToneMapping, c as Vector3, d as Vector2, C as Clock, W as WebGLRenderer, e as Camera, f as BufferGeometry, M as Material, L as Layers, T as Texture, h as RGBAFormat, U as UnsignedByteType, i as Color, _ as _extends, j as THREE, G as Group, k as Matrix4, l as TrianglesDrawMode, m as TriangleFanDrawMode, n as TriangleStripDrawMode, o as REVISION, E as EventDispatcher, p as MOUSE, q as TOUCH, r as Spherical, Q as Quaternion, s as Ray$1, t as Plane, u as Loader, v as LoaderUtils, F as FileLoader, w as MeshPhysicalMaterial, x as SpotLight, y as PointLight, D as DirectionalLight, I as InstancedMesh, z as Object3D, H as TextureLoader, J as ImageBitmapLoader, K as BufferAttribute, X as InterleavedBuffer, Y as LinearMipmapLinearFilter, Z as NearestMipmapLinearFilter, $ as LinearMipmapNearestFilter, a0 as NearestMipmapNearestFilter, a1 as LinearFilter, a2 as NearestFilter, a3 as RepeatWrapping, a4 as MirroredRepeatWrapping, a5 as ClampToEdgeWrapping, a6 as PointsMaterial, a7 as LineBasicMaterial, a8 as MeshStandardMaterial, a9 as DoubleSide, aa as MeshBasicMaterial, ab as PropertyBinding, ac as SkinnedMesh, ad as Mesh, ae as LineSegments, af as Line$1, ag as LineLoop, ah as Points, ai as MathUtils, aj as Skeleton, ak as InterpolateDiscrete, al as InterpolateLinear, am as AnimationClip, an as Bone, ao as InterleavedBufferAttribute, ap as VectorKeyframeTrack, aq as QuaternionKeyframeTrack, ar as NumberKeyframeTrack, as as FrontSide, at as Interpolant, au as Box3, av as Sphere, aw as InstancedBufferGeometry, ax as Float32BufferAttribute, ay as InstancedInterleavedBuffer, az as WireframeGeometry, aA as ShaderMaterial, aB as UniformsUtils, aC as UniformsLib, aD as Vector4, aE as Line3, aF as SphereGeometry, aG as Triangle, aH as BackSide, aI as jsxRuntimeExports, aJ as Matrix3, aK as CoordinationType, aL as Data3DTexture, aM as RedFormat, aN as FloatType, aO as getImageSize } from "./index-Dysf8251.js";
+import { g as getDefaultExportFromCjs, R as Raycaster, O as OrthographicCamera, P as PerspectiveCamera, S as Scene, a as PCFSoftShadowMap, V as VSMShadowMap, b as PCFShadowMap, B as BasicShadowMap, N as NoToneMapping, A as ACESFilmicToneMapping, c as Vector3, d as Vector2, C as Clock, W as WebGLRenderer, e as Camera, f as BufferGeometry, M as Material, L as Layers, T as Texture, h as RGBAFormat, U as UnsignedByteType, i as Color, _ as _extends, j as THREE, G as Group, k as Matrix4, l as TrianglesDrawMode, m as TriangleFanDrawMode, n as TriangleStripDrawMode, o as REVISION, E as EventDispatcher, p as MOUSE, q as TOUCH, r as Spherical, Q as Quaternion, s as Ray$1, t as Plane, u as Loader, v as LoaderUtils, F as FileLoader, w as MeshPhysicalMaterial, x as SpotLight, y as PointLight, D as DirectionalLight, I as InstancedMesh, z as Object3D, H as TextureLoader, J as ImageBitmapLoader, K as BufferAttribute, X as InterleavedBuffer, Y as LinearMipmapLinearFilter, Z as NearestMipmapLinearFilter, $ as LinearMipmapNearestFilter, a0 as NearestMipmapNearestFilter, a1 as LinearFilter, a2 as NearestFilter, a3 as RepeatWrapping, a4 as MirroredRepeatWrapping, a5 as ClampToEdgeWrapping, a6 as PointsMaterial, a7 as LineBasicMaterial, a8 as MeshStandardMaterial, a9 as DoubleSide, aa as MeshBasicMaterial, ab as PropertyBinding, ac as SkinnedMesh, ad as Mesh, ae as LineSegments, af as Line$1, ag as LineLoop, ah as Points, ai as MathUtils, aj as Skeleton, ak as InterpolateDiscrete, al as InterpolateLinear, am as AnimationClip, an as Bone, ao as InterleavedBufferAttribute, ap as VectorKeyframeTrack, aq as QuaternionKeyframeTrack, ar as NumberKeyframeTrack, as as FrontSide, at as Interpolant, au as Box3, av as Sphere, aw as InstancedBufferGeometry, ax as Float32BufferAttribute, ay as InstancedInterleavedBuffer, az as WireframeGeometry, aA as ShaderMaterial, aB as UniformsUtils, aC as UniformsLib, aD as Vector4, aE as Line3, aF as SphereGeometry, aG as Triangle, aH as BackSide, aI as jsxRuntimeExports, aJ as Matrix3, aK as CoordinationType, aL as Data3DTexture, aM as RedFormat, aN as FloatType, aO as getImageSize } from "./index-KG6yVDeM.js";
 import * as React from "react";
 import React__default, { useReducer, useRef, useEffect, useLayoutEffect, useDebugValue, useState, useMemo, forwardRef } from "react";
 var constants = { exports: {} };
@@ -23637,7 +23637,7 @@ const Text = /* @__PURE__ */ React.forwardRef(({
   const {
     Text: TextMeshImpl,
     preloadFont
-  } = suspend(async () => import("./troika-three-text.esm-Brh3NnXI.js"), []);
+  } = suspend(async () => import("./troika-three-text.esm-C7mJ9tlO.js"), []);
   const invalidate2 = useThree(({
     invalidate: invalidate3
   }) => invalidate3);

package/dist/index.js

@@ -1,4 +1,4 @@
-import { bL, bJ, bH, bK, bI, bG, bM } from "./index-Dysf8251.js";
+import { bL, bJ, bH, bK, bI, bG, bM } from "./index-KG6yVDeM.js";
 import { useComplexCoordination, useComplexCoordinationSecondary, useCoordination, useCoordinationScopes, useCoordinationScopesBy, useGridItemSize, useMultiCoordinationScopesNonNull, useMultiCoordinationScopesSecondaryNonNull, usePageModeView } from "@vitessce/vit-s";
 export {
   bL as PluginAsyncFunction,

package/dist/{jpeg-C2g1td_K.js → jpeg-Bh1wXUXT.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-Dysf8251.js";
+import { aP as BaseDecoder } from "./index-KG6yVDeM.js";
 const dctZigZag = new Int32Array([
   0,
   1,

package/dist/{lerc-DiBZtw18.js → lerc-1WB3uddx.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { g as getDefaultExportFromCjs, aP as BaseDecoder, aQ as LercParameters, aR as LercAddCompression } from "./index-Dysf8251.js";
+import { g as getDefaultExportFromCjs, aP as BaseDecoder, aQ as LercParameters, aR as LercAddCompression } from "./index-KG6yVDeM.js";
 var LercDecode = { exports: {} };
 var hasRequiredLercDecode;
 function requireLercDecode() {

package/dist/{lzw-DmDsHkC2.js → lzw-Ct4BzFEq.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-Dysf8251.js";
+import { aP as BaseDecoder } from "./index-KG6yVDeM.js";
 const MIN_BITS = 9;
 const CLEAR_CODE = 256;
 const EOI_CODE = 257;

package/dist/{packbits-B_GD-k-S.js → packbits-BAF4ayoO.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-Dysf8251.js";
+import { aP as BaseDecoder } from "./index-KG6yVDeM.js";
 class PackbitsDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     const dataView = new DataView(buffer);

package/dist/{raw-C8Sljmcb.js → raw-CoeHW2Mx.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-Dysf8251.js";
+import { aP as BaseDecoder } from "./index-KG6yVDeM.js";
 class RawDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return buffer;

package/dist/{troika-three-text.esm-Brh3NnXI.js → troika-three-text.esm-C7mJ9tlO.js}

@@ -1,4 +1,4 @@
-import { bA as MeshDistanceMaterial, bB as MeshDepthMaterial, bC as RGBADepthPacking, aB as UniformsUtils, bD as ShaderChunk, aw as InstancedBufferGeometry, av as Sphere, au as Box3, aH as BackSide, a9 as DoubleSide, ad as Mesh, as as FrontSide, aa as MeshBasicMaterial, i as Color, c as Vector3, k as Matrix4, d as Vector2, aJ as Matrix3, aD as Vector4, T as Texture, a1 as LinearFilter, bE as PlaneGeometry, f as BufferGeometry, ax as Float32BufferAttribute, bF as InstancedBufferAttribute } from "./index-Dysf8251.js";
+import { bA as MeshDistanceMaterial, bB as MeshDepthMaterial, bC as RGBADepthPacking, aB as UniformsUtils, bD as ShaderChunk, aw as InstancedBufferGeometry, av as Sphere, au as Box3, aH as BackSide, a9 as DoubleSide, ad as Mesh, as as FrontSide, aa as MeshBasicMaterial, i as Color, c as Vector3, k as Matrix4, d as Vector2, aJ as Matrix3, aD as Vector4, T as Texture, a1 as LinearFilter, bE as PlaneGeometry, f as BufferGeometry, ax as Float32BufferAttribute, bF as InstancedBufferAttribute } from "./index-KG6yVDeM.js";
 function workerBootstrap() {
   var modules = /* @__PURE__ */ Object.create(null);
   function registerModule(ref, callback) {

package/dist/{webimage-CbHUHFQy.js → webimage-BxxoMAns.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-Dysf8251.js";
+import { aP as BaseDecoder } from "./index-KG6yVDeM.js";
 class WebImageDecoder extends BaseDecoder {
   constructor() {
     super();

package/dist-tsc/base-plugins.d.ts

@@ -49,6 +49,13 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
         featureFilterPath?: string | undefined;
         initialFeatureFilterPath?: string | undefined;
     }>>;
+    obsFeatureColumns: z.ZodOptional<z.ZodArray<z.ZodObject<{
+        path: z.ZodString;
+    }, "strip", z.ZodTypeAny, {
+        path: string;
+    }, {
+        path: string;
+    }>, "many">>;
     obsSets: z.ZodOptional<z.ZodArray<z.ZodObject<{
         name: z.ZodString;
         path: z.ZodUnion<[z.ZodString, z.ZodArray<z.ZodString, "many">]>;
@@ -146,6 +153,9 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
         featureFilterPath?: string | undefined;
         initialFeatureFilterPath?: string | undefined;
     } | undefined;
+    obsFeatureColumns?: {
+        path: string;
+    }[] | undefined;
     obsSets?: {
         path: (string | string[]) & (string | string[] | undefined);
         name: string;
@@ -195,6 +205,9 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
         featureFilterPath?: string | undefined;
         initialFeatureFilterPath?: string | undefined;
     } | undefined;
+    obsFeatureColumns?: {
+        path: string;
+    }[] | undefined;
     obsSets?: {
         path: (string | string[]) & (string | string[] | undefined);
         name: string;

package/dist-tsc/base-plugins.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"base-plugins.d.ts","sourceRoot":"","sources":["../src/base-plugins.ts"],"names":[],"mappings":"AAWA,OAAO,EACL,cAAc,EACd,mBAAmB,EACnB,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,KAAK,EACV,UAAU,EACV,UAAU,EACX,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,CAAC,EAkDF,MAAM,mBAAmB,CAAC;AAuK3B,eAAO,MAAM,aAAa,kBA8BzB,CAAC;AAEF,eAAO,MAAM,aAAa,wDA2EzB,CAAC;AAEF,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yBA0E7B,CAAD;gCAEmB,CAAC;;;yBAGnB,CAAC;gCAEmB,CAAC;;;;;;;;;;;;;;;;iBAS2D,CAAC;;;;iBAG/E,CAAF;;;;;;;YAKiB,CAAC;;;YAGV,CAAC;;;;;;;YAMP,CAAF;;;YAE0B,CAAC;;;;;;;YAQ3B,CAAC;;;YAEgC,CAAC;;;;;;;;;;;;;;YAShC,CAAJ;;;YAE0B,CAAC;;;;;;;;YAQH,CAAC;;;;YAIG,CAAC;;;;;;;;;;;;;;;;;;;;;;;;yBAaK,CAAC;gCAIhC,CAAC;;;;;;;;iBAUkB,CAAC;;;;YAIrB,CAAA;;;;YAGS,CAAC;;;;YAIY,CAAC;;;;;;;YAOhB,CAAC;;;;YAGR,CAAF;;;;;;;;;;;;;;;;;;;;yBAI+E,CAAC;gCAC1C,CAAC;;;;;;;;iBAGhC,CAAC;;;;YACF,CAAC;;;;YACH,CAAC;;;;YAAkG,CAAC;;;;;;;YAEvC,CAAC;;;;YACK,CAAC;;;;;;;;;;;wBAoE4jC,CAAC;;;wBAA6E,CAAC;;;;;;;;iBAA8Q,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;yBAAkZ,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;yBAA8E,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;;;;;iBAAgR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;;;qBAAygB,CAAC;;;;qBAA2J,CAAC;;;;;;qBAAsN,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;qBAA0K,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;wBAAwL,CAAC;;;;iBAA+F,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;wBAAqJ,CAAC;;;;iBAA+F,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBAvhB78L,CAAC;;;;;qBAGU,CAAC;qBAA4C,CAAC;;;;;;;;;qBAIlD,CAAC;6BACZ,CAAA;;sBAEa,CAAC;;;;;qBAOY,CAAC;qBACK,CAAC;;;;;;;;;qBAa/B,CAAC;6BAEH,CAAC;;;;;;;;;;;;;kBAwBC,CAAC;mBACO,CAAC;gBAEH,CAAC;gBAEd,CAAF;uBACY,CAAC;iBAEX,CAAC;oBACY,CAAC;oBAEb,CAAC;qBACQ,CAAC;;kBAER,CAAC;mBAEC,CAAC;gBAGK,CAAC;gBACA,CAAC;uBAGV,CAAC;iBAGI,CAAC;oBAET,CAAA;oBACgB,CAAC;qBAEV,CAAC;;;;;;gBAMqB,CAAC;sBAE1B,CAAC;;;;;qBAWK,CAAC;qBAEX,CAAD;;;;;;;;;qBAUsB,CAAC;6BAEX,CAAC;;mBAGC,CAAC;kBACR,CAAC;mBAED,CAAC;gBAEQ,CAAC;gBAEF,CAAC;uBAEP,CAAA;iBAAuC,CAAC;oBACd,CAAC;oBACZ,CAAC;qBAA2C,CAAC;;;;;;gBAGiC,CAAC;sBAA0B,CAAC;;;;;qBAGlF,CAAC;qBACxC,CAAC;;;;;;;;;qBAGD,CAAC;6BAAoD,CAAC;;mBACrC,CAAC;kBAAsB,CAAC;mBACtB,CAAC;gBACtB,CAAF;gBACM,CAAC;uBACmB,CAAC;iBAAuC,CAAC;oBAA0C,CAAC;oBAKhG,CAAC;qBACY,CAAC;;;;;;;;;gBAGqB,CAAC;sBACrD,CAAC;;;;;qBAGmC,CAAC;qBACT,CAAC;;;;;;;;;qBAIjB,CAAC;6BAAoD,CAAC;;mBAC9B,CAAC;kBAAsB,CAAC;mBAC3B,CAAC;gBAC9B,CAAC;gBAAsC,CAAC;uBACxB,CAAC;iBACP,CAAC;oBAA0C,CAAC;oBAC3B,CAAA;qBACX,CAAC;;;;;;;;;;;gBAIF,CAAC;sBAA0B,CAAC;;;;;qBAGS,CAAC;qBACtC,CAAC;;;;;;;;;qBAMH,CAAC;6BAAoD,CAAC;;mBACzC,CAAC;kBAAsB,CAAC;mBAAyC,CAAC;gBAC1E,CAAC;gBAAsC,CAAC;uBAC/D,CAAA;iBAAuC,CAAC;oBAA0C,CAAC;oBACvE,CAAC;qBAA2C,CAAC;;;;;;;;;;;;;;OAyF1D,CAAC;AAIF,eAAO,MAAM,qBAAqB;;;;;;;;aA/VtB,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cAEF,CAAD;eAEU,CAAC;;;;;;;;;;;;;;;;;;;aAiB0B,CAAC;cACjB,CAAC;eAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;aAlEnD,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cAEF,CAAD;eAEU,CAAC;;;;;;;;;;;;;;;;;;;aAiB0B,CAAC;cACjB,CAAC;eAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kzBA8gB9D,CAAC;AAEF,eAAO,MAAM,kBAAkB,uBAK9B,CAAC"}

package/dist-tsc/base-plugins.js

@@ -175,6 +175,7 @@ export const baseJointFileTypes = [
     new PluginJointFileType(FileType.ANNDATA_ZARR_ZIP, expandAnndataZarr, anndataZarrSchema),
     new PluginJointFileType(FileType.ANNDATA_H5AD, expandAnndataZarr, anndataH5adSchema),
     new PluginJointFileType(FileType.SPATIALDATA_ZARR, expandSpatialdataZarr, spatialdataZarrSchema),
+    new PluginJointFileType(FileType.SPATIALDATA_ZARR_ZIP, expandSpatialdataZarr, spatialdataZarrSchema),
     // For legacy file types:
     new PluginJointFileType(FileType.ANNDATA_CELLS_ZARR, expandAnndataCellsZarr, anndataCellsZarrSchema),
     new PluginJointFileType(FileType.ANNDATA_CELL_SETS_ZARR, expandAnndataCellSetsZarr, anndataCellSetsZarrSchema),

package/dist-tsc/joint-file-types.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"joint-file-types.d.ts","sourceRoot":"","sources":["../src/joint-file-types.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAC7B,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,mBAAmB,CAAC;AA6B7D,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,SAsO7E;AAED,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC;;;;;;;;UAjQ1E,MAAM;kBACE,GAAG;;;;;;;UADX,MAAM;kBACE,GAAG;;;;;;;UADX,MAAM;kBACE,GAAG;KA+VlB"}

package/dist-tsc/joint-file-types.js

@@ -55,6 +55,23 @@ export function expandAnndataZarr(fileDef) {
                     featureValueType: baseFileDef.coordinationValues.featureValueType,
                 },
             }] : []),
+        // obsFeatureColumns
+        ...(options.obsFeatureColumns ? [{
+                ...baseFileDef,
+                fileType: getFileType(FileType.OBS_FEATURE_COLUMNS_ANNDATA_ZARR),
+                options: {
+                    ...sharedOptions,
+                    obsFeatureColumns: options.obsFeatureColumns,
+                },
+                coordinationValues: {
+                    ...extraCoordinationValues,
+                    obsType: baseFileDef.coordinationValues.obsType,
+                    // TODO: allow providing a featureType that is scoped to each `obsFeatureColumns` item
+                    // (rather than always using the featureType from the file definition).
+                    featureType: baseFileDef.coordinationValues.featureType,
+                    featureValueType: baseFileDef.coordinationValues.featureValueType,
+                },
+            }] : []),
         // obsSets
         ...(options.obsSets ? [{
                 ...baseFileDef,
@@ -225,6 +242,7 @@ export function expandAnndataZarr(fileDef) {
     ];
 }
 export function expandSpatialdataZarr(fileDef) {
+    const getFileType = createGetFileType(fileDef.fileType);
     const baseFileDef = {
         url: fileDef.url,
         requestInit: fileDef.requestInit,
@@ -248,7 +266,7 @@ export function expandSpatialdataZarr(fileDef) {
         // TODO: handle multiple obsFeatureMatrix?
         ...(options.obsFeatureMatrix ? [{
                 ...baseFileDef,
-                fileType: FileType.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR,
+                fileType: getFileType(FileType.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR),
                 options: options.obsFeatureMatrix,
                 coordinationValues: {
                     ...extraCoordinationValues,
@@ -261,7 +279,7 @@ export function expandSpatialdataZarr(fileDef) {
         // TODO: handle multiple obsSets?
         ...(options.obsSets ? [{
                 ...baseFileDef,
-                fileType: FileType.OBS_SETS_SPATIALDATA_ZARR,
+                fileType: getFileType(FileType.OBS_SETS_SPATIALDATA_ZARR),
                 options: options.obsSets,
                 coordinationValues: {
                     ...extraCoordinationValues,
@@ -272,7 +290,7 @@ export function expandSpatialdataZarr(fileDef) {
         // TODO: handle multiple obsSpots?
         ...(options.obsSpots ? [{
                 ...baseFileDef,
-                fileType: FileType.OBS_SPOTS_SPATIALDATA_ZARR,
+                fileType: getFileType(FileType.OBS_SPOTS_SPATIALDATA_ZARR),
                 options: {
                     coordinateSystem: defaultCoordinateSystem,
                     ...options.obsSpots,
@@ -291,7 +309,7 @@ export function expandSpatialdataZarr(fileDef) {
         // TODO: handle multiple images
         ...(options.image ? [{
                 ...baseFileDef,
-                fileType: FileType.IMAGE_SPATIALDATA_ZARR,
+                fileType: getFileType(FileType.IMAGE_SPATIALDATA_ZARR),
                 options: {
                     coordinateSystem: defaultCoordinateSystem,
                     ...options.image,
@@ -306,7 +324,7 @@ export function expandSpatialdataZarr(fileDef) {
         // TODO: handle multiple labels?
         ...(options.labels ? [{
                 ...baseFileDef,
-                fileType: FileType.LABELS_SPATIALDATA_ZARR,
+                fileType: getFileType(FileType.LABELS_SPATIALDATA_ZARR),
                 options: {
                     coordinateSystem: defaultCoordinateSystem,
                     ...options.labels,

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/all",
-  "version": "3.6.2",
+  "version": "3.6.4",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -17,36 +17,36 @@
   ],
   "dependencies": {
     "zod": "^3.21.4",
-    "@vitessce/styles": "3.6.2",
-    "@vitessce/constants-internal": "3.6.2",
-    "@vitessce/abstract": "3.6.2",
-    "@vitessce/csv": "3.6.2",
-    "@vitessce/description": "3.6.2",
-    "@vitessce/feature-list": "3.6.2",
-    "@vitessce/genomic-profiles": "3.6.2",
-    "@vitessce/heatmap": "3.6.2",
-    "@vitessce/glb": "3.6.2",
-    "@vitessce/json": "3.6.2",
-    "@vitessce/layer-controller": "3.6.2",
-    "@vitessce/layer-controller-beta": "3.6.2",
-    "@vitessce/link-controller": "3.6.2",
-    "@vitessce/obs-sets-manager": "3.6.2",
-    "@vitessce/ome-tiff": "3.6.2",
-    "@vitessce/plugins": "3.6.2",
-    "@vitessce/scatterplot-embedding": "3.6.2",
-    "@vitessce/scatterplot-gating": "3.6.2",
-    "@vitessce/schemas": "3.6.2",
-    "@vitessce/spatial": "3.6.2",
-    "@vitessce/spatial-beta": "3.6.2",
-    "@vitessce/statistical-plots": "3.6.2",
-    "@vitessce/status": "3.6.2",
-    "@vitessce/vit-s": "3.6.2",
-    "@vitessce/zarr": "3.6.2",
-    "@vitessce/globals": "3.6.2",
-    "@vitessce/spatial-zarr": "3.6.2",
-    "@vitessce/spatial-three": "3.6.2",
-    "@vitessce/biomarker-select": "3.6.2",
-    "@vitessce/neuroglancer": "3.6.2"
+    "@vitessce/styles": "3.6.4",
+    "@vitessce/constants-internal": "3.6.4",
+    "@vitessce/abstract": "3.6.4",
+    "@vitessce/csv": "3.6.4",
+    "@vitessce/description": "3.6.4",
+    "@vitessce/feature-list": "3.6.4",
+    "@vitessce/genomic-profiles": "3.6.4",
+    "@vitessce/heatmap": "3.6.4",
+    "@vitessce/glb": "3.6.4",
+    "@vitessce/json": "3.6.4",
+    "@vitessce/layer-controller": "3.6.4",
+    "@vitessce/layer-controller-beta": "3.6.4",
+    "@vitessce/link-controller": "3.6.4",
+    "@vitessce/obs-sets-manager": "3.6.4",
+    "@vitessce/ome-tiff": "3.6.4",
+    "@vitessce/plugins": "3.6.4",
+    "@vitessce/scatterplot-embedding": "3.6.4",
+    "@vitessce/scatterplot-gating": "3.6.4",
+    "@vitessce/schemas": "3.6.4",
+    "@vitessce/spatial": "3.6.4",
+    "@vitessce/spatial-beta": "3.6.4",
+    "@vitessce/statistical-plots": "3.6.4",
+    "@vitessce/status": "3.6.4",
+    "@vitessce/vit-s": "3.6.4",
+    "@vitessce/zarr": "3.6.4",
+    "@vitessce/globals": "3.6.4",
+    "@vitessce/spatial-zarr": "3.6.4",
+    "@vitessce/spatial-three": "3.6.4",
+    "@vitessce/biomarker-select": "3.6.4",
+    "@vitessce/neuroglancer": "3.6.4"
   },
   "devDependencies": {
     "@types/react": "^18.0.28",

package/src/base-plugins.ts

@@ -352,6 +352,7 @@ export const baseJointFileTypes = [
   new PluginJointFileType(FileType.ANNDATA_ZARR_ZIP, expandAnndataZarr, anndataZarrSchema),
   new PluginJointFileType(FileType.ANNDATA_H5AD, expandAnndataZarr, anndataH5adSchema),
   new PluginJointFileType(FileType.SPATIALDATA_ZARR, expandSpatialdataZarr, spatialdataZarrSchema),
+  new PluginJointFileType(FileType.SPATIALDATA_ZARR_ZIP, expandSpatialdataZarr, spatialdataZarrSchema),
   // For legacy file types:
   new PluginJointFileType(FileType.ANNDATA_CELLS_ZARR, expandAnndataCellsZarr, anndataCellsZarrSchema),
   new PluginJointFileType(FileType.ANNDATA_CELL_SETS_ZARR, expandAnndataCellSetsZarr, anndataCellSetsZarrSchema),

package/src/joint-file-types.ts

@@ -67,6 +67,23 @@ export function expandAnndataZarr(fileDef: z.infer<typeof latestFileDefSchema>)
         featureValueType: baseFileDef.coordinationValues.featureValueType,
       },
     }] : []),
+    // obsFeatureColumns
+    ...(options.obsFeatureColumns ? [{
+      ...baseFileDef,
+      fileType: getFileType(FileType.OBS_FEATURE_COLUMNS_ANNDATA_ZARR),
+      options: {
+        ...sharedOptions,
+        obsFeatureColumns: options.obsFeatureColumns,
+      },
+      coordinationValues: {
+        ...extraCoordinationValues,
+        obsType: baseFileDef.coordinationValues.obsType,
+        // TODO: allow providing a featureType that is scoped to each `obsFeatureColumns` item
+        // (rather than always using the featureType from the file definition).
+        featureType: baseFileDef.coordinationValues.featureType,
+        featureValueType: baseFileDef.coordinationValues.featureValueType,
+      },
+    }] : []),
     // obsSets
     ...(options.obsSets ? [{
       ...baseFileDef,
@@ -244,6 +261,7 @@ export function expandAnndataZarr(fileDef: z.infer<typeof latestFileDefSchema>)
 }
 
 export function expandSpatialdataZarr(fileDef: z.infer<typeof latestFileDefSchema>) {
+  const getFileType = createGetFileType(fileDef.fileType);
   const baseFileDef: BaseFileDef = {
     url: fileDef.url,
     requestInit: fileDef.requestInit,
@@ -267,7 +285,7 @@ export function expandSpatialdataZarr(fileDef: z.infer<typeof latestFileDefSchem
     // TODO: handle multiple obsFeatureMatrix?
     ...(options.obsFeatureMatrix ? [{
       ...baseFileDef,
-      fileType: FileType.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR,
+      fileType: getFileType(FileType.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR),
       options: options.obsFeatureMatrix,
       coordinationValues: {
         ...extraCoordinationValues,
@@ -280,7 +298,7 @@ export function expandSpatialdataZarr(fileDef: z.infer<typeof latestFileDefSchem
     // TODO: handle multiple obsSets?
     ...(options.obsSets ? [{
       ...baseFileDef,
-      fileType: FileType.OBS_SETS_SPATIALDATA_ZARR,
+      fileType: getFileType(FileType.OBS_SETS_SPATIALDATA_ZARR),
       options: options.obsSets,
       coordinationValues: {
         ...extraCoordinationValues,
@@ -291,7 +309,7 @@ export function expandSpatialdataZarr(fileDef: z.infer<typeof latestFileDefSchem
     // TODO: handle multiple obsSpots?
     ...(options.obsSpots ? [{
       ...baseFileDef,
-      fileType: FileType.OBS_SPOTS_SPATIALDATA_ZARR,
+      fileType: getFileType(FileType.OBS_SPOTS_SPATIALDATA_ZARR),
       options: {
         coordinateSystem: defaultCoordinateSystem,
         ...options.obsSpots,
@@ -310,7 +328,7 @@ export function expandSpatialdataZarr(fileDef: z.infer<typeof latestFileDefSchem
     // TODO: handle multiple images
     ...(options.image ? [{
       ...baseFileDef,
-      fileType: FileType.IMAGE_SPATIALDATA_ZARR,
+      fileType: getFileType(FileType.IMAGE_SPATIALDATA_ZARR),
       options: {
         coordinateSystem: defaultCoordinateSystem,
         ...options.image,
@@ -325,7 +343,7 @@ export function expandSpatialdataZarr(fileDef: z.infer<typeof latestFileDefSchem
     // TODO: handle multiple labels?
     ...(options.labels ? [{
       ...baseFileDef,
-      fileType: FileType.LABELS_SPATIALDATA_ZARR,
+      fileType: getFileType(FileType.LABELS_SPATIALDATA_ZARR),
       options: {
         coordinateSystem: defaultCoordinateSystem,
         ...options.labels,