@vitessce/all 3.6.16 → 3.6.18
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/{ReactNeuroglancer-iZCfY5TU.js → ReactNeuroglancer-BEVcmeJW.js} +1 -1
- package/dist/{deflate-B4lAhrai.js → deflate-D4WUbeKy.js} +1 -1
- package/dist/{higlass-EAS9uYCT.js → higlass-B5A5XLB4.js} +1 -1
- package/dist/{index-4NRxI5_U.js → index-B2chDEFY.js} +258 -220
- package/dist/{index-Da_amvil.js → index-DTVSAAC6.js} +2 -2
- package/dist/index.js +1 -1
- package/dist/{jpeg-Bchz4eQZ.js → jpeg-CP3IBASq.js} +1 -1
- package/dist/{lerc-zYgnQpg3.js → lerc-BAp1E_M5.js} +1 -1
- package/dist/{lzw-BGfMtVf8.js → lzw-BSD1S9eX.js} +1 -1
- package/dist/{packbits-CY5eh5R9.js → packbits-BjpOk8Mk.js} +1 -1
- package/dist/{raw-Cr701BEG.js → raw-Dcut_m0H.js} +1 -1
- package/dist/{troika-three-text.esm-CEMf4KoZ.js → troika-three-text.esm-C4kMzHny.js} +1 -1
- package/dist/{webimage-DxRfiiSy.js → webimage-CmDy5gE2.js} +1 -1
- package/package.json +32 -32
@@ -1,4 +1,4 @@
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import { g as getDefaultExportFromCjs, aV as requireAssign, aW as require_export, aX as require_core, aY as require_fails, aZ as require_toObject, a_ as require_objectKeys, a$ as require_cof, b0 as require_wks, b1 as require_iterators, b2 as requireWeb_dom_iterable, b3 as requireEs6_string_iterator, b4 as require_anObject, b5 as require_hide, b6 as require_ctx, b7 as require_toLength, b8 as require_global, b9 as require_objectDp, ba as require_descriptors, bb as require_isObject, bc as require_objectCreate, bd as require_iterDefine, be as require_iterStep, bf as require_meta, bg as require_isArray, bh as require_iobject, bi as require_setToStringTag, bj as require_aFunction, bk as requireIterator, bl as require_propertyDesc, aS as commonjsGlobal, bm as requireEs6_symbol, bn as requireDefineProperty, bo as require_toIobject, bp as require_objectGopd, bq as require_html, br as require_domCreate, bs as require_library, bt as requireSymbol, bu as require_objectPie, bv as require_has, bw as require_redefine, bx as require_objectAssign, by as getAugmentedNamespace, bz as requirePropTypes, aI as jsxRuntimeExports } from "./index-
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import { g as getDefaultExportFromCjs, aV as requireAssign, aW as require_export, aX as require_core, aY as require_fails, aZ as require_toObject, a_ as require_objectKeys, a$ as require_cof, b0 as require_wks, b1 as require_iterators, b2 as requireWeb_dom_iterable, b3 as requireEs6_string_iterator, b4 as require_anObject, b5 as require_hide, b6 as require_ctx, b7 as require_toLength, b8 as require_global, b9 as require_objectDp, ba as require_descriptors, bb as require_isObject, bc as require_objectCreate, bd as require_iterDefine, be as require_iterStep, bf as require_meta, bg as require_isArray, bh as require_iobject, bi as require_setToStringTag, bj as require_aFunction, bk as requireIterator, bl as require_propertyDesc, aS as commonjsGlobal, bm as requireEs6_symbol, bn as requireDefineProperty, bo as require_toIobject, bp as require_objectGopd, bq as require_html, br as require_domCreate, bs as require_library, bt as requireSymbol, bu as require_objectPie, bv as require_has, bw as require_redefine, bx as require_objectAssign, by as getAugmentedNamespace, bz as requirePropTypes, aI as jsxRuntimeExports } from "./index-B2chDEFY.js";
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import React__default from "react";
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var lib = {};
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var assignExports = requireAssign();
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@@ -1,5 +1,5 @@
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import { i as inflate_1 } from "./pako.esm-SxljTded.js";
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import { aP as BaseDecoder } from "./index-
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import { aP as BaseDecoder } from "./index-B2chDEFY.js";
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class DeflateDecoder extends BaseDecoder {
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decodeBlock(buffer) {
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return inflate_1(new Uint8Array(buffer)).buffer;
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@@ -1,7 +1,7 @@
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import * as React$7 from "react";
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import React__default, { isValidElement, PureComponent, Component, createElement, createContext, createRef } from "react";
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import ReactDOM__default, { findDOMNode as findDOMNode$1 } from "react-dom";
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import { aS as commonjsGlobal$1, aT as requireObjectAssign, g as getDefaultExportFromCjs$1, aU as earcut } from "./index-
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import { aS as commonjsGlobal$1, aT as requireObjectAssign, g as getDefaultExportFromCjs$1, aU as earcut } from "./index-B2chDEFY.js";
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var promise = {};
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var hasRequiredPromise;
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function requirePromise() {
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@@ -12,7 +12,7 @@ var __privateMethod = (obj, member, method2) => (__accessCheck(obj, member, "acc
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var _a2, _b2, _overrides, _use_suffix_request, _FetchStore_instances, merge_init_fn, _c, _bytes, _d, _encoder, _e, _data, _f, _stride, _TypedArray, _BYTES_PER_ELEMENT, _shape, _endian, _g, _encoder_config, _decoder_config, _h, _order, _inverseOrder, _i, _shape2, _strides, _j, _metadata, _k, _metadata2, _l, _overrides2, _refs, _opts, _overrides3, _focused, _cleanup, _setup, _m2, _online, _cleanup2, _setup2, _n, _client, _currentQuery, _currentQueryInitialState, _currentResult, _currentResultState, _currentResultOptions, _currentThenable, _selectError, _selectFn, _selectResult, _lastQueryWithDefinedData, _staleTimeoutId, _refetchIntervalId, _currentRefetchInterval, _trackedProps, _QueryObserver_instances, executeFetch_fn, updateStaleTimeout_fn, computeRefetchInterval_fn, updateRefetchInterval_fn, updateTimers_fn, clearStaleTimeout_fn, clearRefetchInterval_fn, updateQuery_fn, notify_fn, _o2, _client2, _result, _queries, _options, _observers, _combinedResult, _lastCombine, _lastResult, _observerMatches, _QueriesObserver_instances, trackResult_fn, combineResult_fn, findMatchingObservers_fn, onUpdate_fn, notify_fn2, _p2, _bytes2, _encoder2, _data2, _stride2, _TypedArray2, _BYTES_PER_ELEMENT2, _shape3, _endian2, _encoder_config2, _decoder_config2, _order2, _inverseOrder2, _shape4, _strides2, _metadata3, _q, _metadata4, _r, _overrides4, _use_suffix_request2, _FetchStore_instances2, merge_init_fn2;
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import * as React from "react";
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import React__default, { useContext, forwardRef as forwardRef$1, useRef, useMemo as useMemo$1, createContext, createElement, isValidElement, cloneElement, Children, version as version$6, useLayoutEffect as useLayoutEffect$1, useEffect, useImperativeHandle, PureComponent, Component as Component$1, useState, useCallback, Suspense, useReducer } from "react";
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import { useLoaders, useCoordination, useDescription, useImageData, useReady, TitleInfo, useVitessceContainer, useSetWarning, useObsSetsData, useUrls, usePlotOptionsStyles, OptionsContainer, CellColorEncodingOption, OptionSelect, useComponentHover, useComponentViewInfo, useSetComponentHover, useSetComponentViewInfo, useInitialCoordination, useDeckCanvasSize, useMultiObsLabels, useObsEmbeddingData, useFeatureSelection, useObsFeatureMatrixIndices, useFeatureLabelsData, useExpandedFeatureLabelsMap, useSampleSetsData, useSampleEdgesData, useGetObsInfo, useUint8FeatureSelection, useExpressionValueGetter, useAuxiliaryCoordination, useHasLoader, useObsLocationsData, useObsLabelsData, useObsSegmentationsData, useNeighborhoodsData, useMergeCoordination,
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import { useLoaders, useCoordinationScopes, useCoordination, useDescription, useImageData, useReady, TitleInfo, useVitessceContainer, useSetWarning, useObsSetsData, useUrls, usePlotOptionsStyles, OptionsContainer, CellColorEncodingOption, OptionSelect, useComponentHover, useComponentViewInfo, useSetComponentHover, useSetComponentViewInfo, useInitialCoordination, useDeckCanvasSize, useMultiObsLabels, useObsEmbeddingData, useFeatureSelection, useObsFeatureMatrixIndices, useFeatureLabelsData, useExpandedFeatureLabelsMap, useSampleSetsData, useSampleEdgesData, useGetObsInfo, useUint8FeatureSelection, useExpressionValueGetter, useAuxiliaryCoordination, useHasLoader, useObsLocationsData, useObsLabelsData, useObsSegmentationsData, useNeighborhoodsData, useMergeCoordination, useCoordinationScopesBy, useMultiCoordinationScopesSecondaryNonNull, useMultiCoordinationScopesNonNull, useComplexCoordination, useComplexCoordinationSecondary, useGridItemSize, useMultiObsPoints, usePointMultiObsLabels, useMultiObsSpots, useSpotMultiObsSets, useSpotMultiFeatureLabels, useSpotMultiFeatureSelection, useSpotMultiObsFeatureMatrixIndices, useSegmentationMultiObsLocations, useMultiObsSegmentations, useSegmentationMultiObsSets, useSegmentationMultiFeatureSelection, useSegmentationMultiObsFeatureMatrixIndices, useMultiImages, useObsFeatureMatrixData, useUint8ObsFeatureMatrix, useGetObsMembership, PopperMenu, useComponentLayout, useClosestVitessceContainerSize, useWindowDimensions, useRemoveImageChannelInMetaCoordinationScopes, useAddImageChannelInMetaCoordinationScopes, useViewConfigStoreApi, useViewConfig, useSetViewConfig, createLoaders, useWarning, useGenomicProfilesData, useMatchingLoader, useColumnNameMapping, useFeatureStatsData, useObsSetStatsData, useAsyncFunction, useFeatureSetStatsData, useComparisonMetadata, logConfig, VitSContainer } from "@vitessce/vit-s";
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import * as ReactDOM from "react-dom";
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import ReactDOM__default, { createPortal } from "react-dom";
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function _mergeNamespaces(n3, m2) {
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@@ -82846,8 +82846,9 @@ function Description(props) {
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return jsxRuntimeExports.jsxs("div", { className: classes2.description, children: [descriptionType && descriptionType === DescriptionType.MARKDOWN ? jsxRuntimeExports.jsx(Markdown, { children: description2 }) : jsxRuntimeExports.jsx("p", { children: description2 }), metadata2 && Array.from(metadata2.entries()).map(([layerIndex, { name: layerName, metadata: metadataRecord }]) => metadataRecord && Object.entries(metadataRecord).length > 0 ? jsxRuntimeExports.jsxs("details", { children: [jsxRuntimeExports.jsx("summary", { children: layerName }), jsxRuntimeExports.jsx("div", { className: classes2.metadataContainer, children: jsxRuntimeExports.jsx("table", { children: jsxRuntimeExports.jsx("tbody", { children: Object.entries(metadataRecord).map(([key2, value2]) => jsxRuntimeExports.jsxs("tr", { children: [jsxRuntimeExports.jsx("th", { title: key2, children: key2 }), jsxRuntimeExports.jsx("td", { title: value2, children: value2 })] }, key2)) }) }) })] }, layerIndex) : null)] });
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}
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function DescriptionSubscriber(props) {
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const { coordinationScopes, description: descriptionOverride, descriptionType, removeGridComponent, theme, title: title2 = "Description", closeButtonVisible, helpText = ViewHelpMapping.DESCRIPTION } = props;
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const { coordinationScopes: coordinationScopesRaw, description: descriptionOverride, descriptionType, removeGridComponent, theme, title: title2 = "Description", closeButtonVisible, helpText = ViewHelpMapping.DESCRIPTION } = props;
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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const [{ dataset, spatialImageLayer: rasterLayers }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.DESCRIPTION], coordinationScopes);
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const [description2] = useDescription(loaders, dataset);
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const [{ image: image2 }, imageStatus, imageUrls, imageError] = useImageData(loaders, dataset, false, {}, {}, {});
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@@ -103386,87 +103387,83 @@ function SetsManager(props) {
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}
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const packageJson = { name: "vitessce" };
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function ObsSetsManagerSubscriber(props) {
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const { coordinationScopes, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, title: titleOverride, helpText = ViewHelpMapping.OBS_SETS } = props;
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const { coordinationScopes: coordinationScopesRaw, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, title: titleOverride, helpText = ViewHelpMapping.OBS_SETS } = props;
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const loaders = useLoaders();
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const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
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const setWarning = useSetWarning();
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const [{ dataset, obsType, obsSetSelection
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const [{ dataset, obsType, obsSetSelection, obsSetExpansion, obsSetColor, additionalObsSets, obsColorEncoding }, { setObsSetSelection, setObsColorEncoding, setObsSetColor, setObsSetExpansion, setAdditionalObsSets }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.OBS_SETS], coordinationScopes);
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const title2 = titleOverride || `${capitalize$3(obsType)} Sets`;
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if (cellSetExpansion && cellSetExpansion.length > 0) {
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setCellSetExpansion([]);
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}
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}, [loaders, dataset]);
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const [{ obsIndex, obsSets: cellSets }, obsSetsStatus, obsSetsUrls, obsSetsError] = useObsSetsData(loaders, dataset, false, { setObsSetSelection: setCellSetSelection, setObsSetColor: setCellSetColor }, { obsSetSelection: cellSetSelection, obsSetColor: cellSetColor }, { obsType });
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const [{ obsIndex, obsSets: cellSets }, obsSetsStatus, obsSetsUrls, obsSetsError] = useObsSetsData(loaders, dataset, false, { setObsSetSelection, setObsSetColor, setObsSetExpansion }, { obsSetSelection, obsSetColor, obsSetExpansion }, { obsType });
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const errors = [
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];
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const isReady = useReady([obsSetsStatus]);
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const urls2 = useUrls([obsSetsUrls]);
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useEffect(() => {
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if (
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if (additionalObsSets) {
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let upgradedCellSets;
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let didUpgrade;
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try {
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[upgradedCellSets, didUpgrade] = tryUpgradeTreeToLatestSchema(
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[upgradedCellSets, didUpgrade] = tryUpgradeTreeToLatestSchema(additionalObsSets, SETS_DATATYPE_OBS);
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} catch (e3) {
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setWarning(e3.message);
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return;
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}
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if (didUpgrade) {
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setAdditionalObsSets(upgradedCellSets);
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}
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}
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}, [
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}, [additionalObsSets, setAdditionalObsSets, setWarning]);
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const allCellIds = useMemo$1(() => obsIndex || [], [obsIndex]);
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}, [
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const setObsSetColorEncoding = useCallback(() => {
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setObsColorEncoding("cellSetSelection");
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}, [setObsColorEncoding]);
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const mergedObsSets = useMemo$1(() => mergeObsSets(cellSets, additionalObsSets), [cellSets, additionalObsSets]);
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const checkedLevel = useMemo$1(() => {
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if (
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return treeToExpectedCheckedLevel(
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if (obsSetSelection && obsSetSelection.length > 0 && mergedObsSets && mergedObsSets.tree.length > 0) {
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return treeToExpectedCheckedLevel(mergedObsSets, obsSetSelection);
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}
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return null;
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}, [
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const onCheckLevel = useCallback((levelZeroName, levelIndex) => {
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const lzn = mergedObsSets.tree.find((n3) => n3.name === levelZeroName);
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const newObsSetSelection = nodeToLevelDescendantNamePaths(lzn, levelIndex, [], true);
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setObsSetSelection(newObsSetSelection);
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setObsSetColorEncoding();
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}
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}, [
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}, [mergedObsSets, setObsSetColorEncoding, setObsSetSelection]);
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const onCheckNode = useCallback((targetKey, checked) => {
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const targetPath = Array.isArray(targetKey) ? targetKey : targetKey.split(PATH_SEP);
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if (checked) {
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setObsSetSelection([...obsSetSelection, targetPath]);
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} else {
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setObsSetSelection(obsSetSelection.filter((d) => !isEqual$3(d, targetPath)));
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}
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}, [
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setObsSetColorEncoding();
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}, [obsSetSelection, setObsSetColorEncoding, setObsSetSelection]);
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const onExpandNode = useCallback((expandedKeys, targetKey, expanded) => {
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const prevObsSetExpansion = obsSetExpansion || [];
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if (expanded) {
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setObsSetExpansion([...prevObsSetExpansion, targetKey.split(PATH_SEP)]);
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} else {
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const
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const newObsSetExpansion = prevObsSetExpansion.filter((d) => !isEqual$3(d, targetKey.split(PATH_SEP)));
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setObsSetExpansion(newObsSetExpansion);
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}
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}, [
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}, [obsSetExpansion, setObsSetExpansion]);
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const onDropNode = useCallback((dropKey, dragKey, dropPosition, dropToGap) => {
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const dropPath = dropKey.split(PATH_SEP);
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const dropNode = treeFindNodeByNamePath(
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const dropNode = treeFindNodeByNamePath(additionalObsSets, dropPath);
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if (!dropNode.children && !dropToGap) {
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return;
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}
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const dropNodeLevel = dropPath.length - 1;
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const dropNodeIsLevelZero = dropNodeLevel === 0;
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const dragPath = dragKey.split(PATH_SEP);
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const dragNode = treeFindNodeByNamePath(
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const dragNode = treeFindNodeByNamePath(additionalObsSets, dragPath);
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if (dropNodeIsLevelZero && dropToGap && !dragNode.children) {
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}
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let dropNodeCurrIndex;
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if (!dropNodeIsLevelZero) {
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dropParentPath = dropPath.slice(0, -1);
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dropParentNode = treeFindNodeByNamePath(
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dropParentNode = treeFindNodeByNamePath(additionalObsSets, dropParentPath);
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dropNodeCurrIndex = dropParentNode.children.findIndex((c2) => c2.name === dropNode.name);
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} else {
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dropNodeCurrIndex =
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dropNodeCurrIndex = additionalObsSets.tree.findIndex((lzn) => lzn.name === dropNode.name);
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}
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let hasSiblingNameConflict;
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const dragNodeName = dragNode.name;
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} else if (!dropToGap) {
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hasSiblingNameConflict = dropNode.children.find((c2) => c2 !== dragNode && c2.name === dragNodeName);
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} else {
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hasSiblingNameConflict =
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hasSiblingNameConflict = additionalObsSets.tree.find((lzn) => lzn !== dragNode && lzn.name === dragNodeName);
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}
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if (hasSiblingNameConflict) {
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return;
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}
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const
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...
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tree:
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const nextAdditionalObsSets = {
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...additionalObsSets,
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tree: additionalObsSets.tree.map((lzn) => filterNode(lzn, [], dragPath)).filter(Boolean)
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};
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if (!dropNodeIsLevelZero) {
|
103500
103497
|
dropNodeCurrIndex = dropParentNode.children.findIndex((c2) => c2.name === dropNode.name);
|
103501
103498
|
} else {
|
103502
|
-
dropNodeCurrIndex =
|
103499
|
+
dropNodeCurrIndex = nextAdditionalObsSets.tree.findIndex((lzn) => lzn.name === dropNode.name);
|
103503
103500
|
}
|
103504
103501
|
let newDragPath = [];
|
103505
103502
|
if (!dropToGap || !dropNodeIsLevelZero) {
|
@@ -103518,67 +103515,67 @@ function ObsSetsManagerSubscriber(props) {
|
|
103518
103515
|
addChildFunction = (n3) => nodeInsertChild(n3, dragNode, insertIndex);
|
103519
103516
|
}
|
103520
103517
|
}
|
103521
|
-
|
103518
|
+
nextAdditionalObsSets.tree = nextAdditionalObsSets.tree.map((node2) => nodeTransform(node2, (n3, path2) => checkPathFunction(path2), (n3) => {
|
103522
103519
|
const newNode = addChildFunction(n3);
|
103523
103520
|
return newNode;
|
103524
103521
|
}, newPath));
|
103525
|
-
|
103522
|
+
setAdditionalObsSets(nextAdditionalObsSets);
|
103526
103523
|
newDragPath = [...newPath[0], dragNode.name];
|
103527
|
-
|
103524
|
+
setObsSetSelection([newDragPath]);
|
103528
103525
|
} else if (dropPosition === -1) {
|
103529
|
-
|
103530
|
-
|
103526
|
+
nextAdditionalObsSets.tree.unshift(dragNode);
|
103527
|
+
setAdditionalObsSets(nextAdditionalObsSets);
|
103531
103528
|
newDragPath = [dragNode.name];
|
103532
|
-
|
103529
|
+
setObsSetSelection([newDragPath]);
|
103533
103530
|
} else {
|
103534
103531
|
const insertIndex = dropNodeCurrIndex + (dropPosition > dropNodeCurrIndex ? 1 : 0);
|
103535
|
-
const newLevelZero = Array.from(
|
103532
|
+
const newLevelZero = Array.from(nextAdditionalObsSets.tree);
|
103536
103533
|
newLevelZero.splice(insertIndex, 0, dragNode);
|
103537
|
-
|
103538
|
-
|
103534
|
+
nextAdditionalObsSets.tree = newLevelZero;
|
103535
|
+
setAdditionalObsSets(nextAdditionalObsSets);
|
103539
103536
|
newDragPath = [dragNode.name];
|
103540
|
-
|
103537
|
+
setObsSetSelection([newDragPath]);
|
103541
103538
|
}
|
103542
|
-
const oldColors =
|
103539
|
+
const oldColors = obsSetColor.filter((i2) => isEqualOrPrefix(dragPath, i2.path));
|
103543
103540
|
const newColors = oldColors.map((i2) => ({
|
103544
103541
|
...i2,
|
103545
103542
|
path: !isEqual$3(i2.path, dragPath) ? newDragPath.concat(i2.path.slice(dragPath.length)) : newDragPath
|
103546
103543
|
}));
|
103547
|
-
const
|
103548
|
-
|
103549
|
-
|
103544
|
+
const newObsSetColor = obsSetColor.filter((i2) => !isEqualOrPrefix(dragPath, i2.path));
|
103545
|
+
newObsSetColor.push(...newColors);
|
103546
|
+
setObsSetColor(newObsSetColor);
|
103550
103547
|
}, [
|
103551
|
-
|
103552
|
-
|
103553
|
-
|
103554
|
-
|
103555
|
-
|
103548
|
+
additionalObsSets,
|
103549
|
+
obsSetColor,
|
103550
|
+
setAdditionalObsSets,
|
103551
|
+
setObsSetColor,
|
103552
|
+
setObsSetSelection
|
103556
103553
|
]);
|
103557
103554
|
const onNodeSetColor = useCallback((targetPath, color2) => {
|
103558
|
-
const prevNodeColor =
|
103555
|
+
const prevNodeColor = obsSetColor == null ? void 0 : obsSetColor.find((d) => isEqual$3(d.path, targetPath));
|
103559
103556
|
if (!prevNodeColor) {
|
103560
|
-
|
103561
|
-
...
|
103557
|
+
setObsSetColor([
|
103558
|
+
...obsSetColor || [],
|
103562
103559
|
{
|
103563
103560
|
path: targetPath,
|
103564
103561
|
color: color2
|
103565
103562
|
}
|
103566
103563
|
]);
|
103567
103564
|
} else {
|
103568
|
-
|
103569
|
-
...
|
103565
|
+
setObsSetColor([
|
103566
|
+
...obsSetColor.filter((d) => !isEqual$3(d.path, targetPath)),
|
103570
103567
|
{
|
103571
103568
|
path: targetPath,
|
103572
103569
|
color: color2
|
103573
103570
|
}
|
103574
103571
|
]);
|
103575
103572
|
}
|
103576
|
-
}, [
|
103573
|
+
}, [obsSetColor, setObsSetColor]);
|
103577
103574
|
const onNodeSetName = useCallback((targetPath, name2) => {
|
103578
103575
|
const nextNamePath = [...targetPath];
|
103579
103576
|
nextNamePath.pop();
|
103580
103577
|
nextNamePath.push(name2);
|
103581
|
-
const
|
103578
|
+
const prevObsSetExpansion = obsSetExpansion || [];
|
103582
103579
|
function renameNode(node2, prevPath) {
|
103583
103580
|
if (isEqual$3([...prevPath, node2.name], targetPath)) {
|
103584
103581
|
return {
|
@@ -103594,64 +103591,64 @@ function ObsSetsManagerSubscriber(props) {
|
|
103594
103591
|
children: node2.children.map((c2) => renameNode(c2, [...prevPath, node2.name]))
|
103595
103592
|
};
|
103596
103593
|
}
|
103597
|
-
const
|
103598
|
-
...
|
103599
|
-
tree:
|
103594
|
+
const nextAdditionalObsSets = {
|
103595
|
+
...additionalObsSets,
|
103596
|
+
tree: additionalObsSets.tree.map((lzn) => renameNode(lzn, []))
|
103600
103597
|
};
|
103601
|
-
const
|
103598
|
+
const nextObsSetColor = obsSetColor.map((d) => ({
|
103602
103599
|
path: tryRenamePath(targetPath, d.path, nextNamePath),
|
103603
103600
|
color: d.color
|
103604
103601
|
}));
|
103605
|
-
const
|
103606
|
-
const
|
103607
|
-
|
103608
|
-
|
103609
|
-
|
103610
|
-
|
103602
|
+
const nextObsSetSelection = obsSetSelection.map((d) => tryRenamePath(targetPath, d, nextNamePath));
|
103603
|
+
const nextObsSetExpansion = prevObsSetExpansion.map((d) => tryRenamePath(targetPath, d, nextNamePath));
|
103604
|
+
setAdditionalObsSets(nextAdditionalObsSets);
|
103605
|
+
setObsSetColor(nextObsSetColor);
|
103606
|
+
setObsSetSelection(nextObsSetSelection);
|
103607
|
+
setObsSetExpansion(nextObsSetExpansion);
|
103611
103608
|
}, [
|
103612
|
-
|
103613
|
-
|
103614
|
-
|
103615
|
-
|
103616
|
-
|
103617
|
-
|
103618
|
-
|
103619
|
-
|
103609
|
+
additionalObsSets,
|
103610
|
+
obsSetColor,
|
103611
|
+
obsSetExpansion,
|
103612
|
+
obsSetSelection,
|
103613
|
+
setAdditionalObsSets,
|
103614
|
+
setObsSetColor,
|
103615
|
+
setObsSetSelection,
|
103616
|
+
setObsSetExpansion
|
103620
103617
|
]);
|
103621
103618
|
const onNodeCheckNewName = useCallback((targetPath, name2) => {
|
103622
103619
|
const nextNamePath = [...targetPath];
|
103623
103620
|
nextNamePath.pop();
|
103624
103621
|
nextNamePath.push(name2);
|
103625
|
-
const hasConflicts = !isEqual$3(targetPath, nextNamePath) && treeFindNodeByNamePath(
|
103622
|
+
const hasConflicts = !isEqual$3(targetPath, nextNamePath) && treeFindNodeByNamePath(additionalObsSets, nextNamePath);
|
103626
103623
|
return hasConflicts;
|
103627
|
-
}, [
|
103624
|
+
}, [additionalObsSets]);
|
103628
103625
|
const onNodeRemove = useCallback((targetPath) => {
|
103629
|
-
const
|
103630
|
-
const
|
103631
|
-
...
|
103632
|
-
tree:
|
103633
|
-
};
|
103634
|
-
const
|
103635
|
-
const
|
103636
|
-
const
|
103637
|
-
|
103638
|
-
|
103639
|
-
|
103640
|
-
|
103626
|
+
const prevObsSetExpansion = obsSetExpansion || [];
|
103627
|
+
const nextAdditionalObsSets = {
|
103628
|
+
...additionalObsSets,
|
103629
|
+
tree: additionalObsSets.tree.map((lzn) => filterNode(lzn, [], targetPath)).filter(Boolean)
|
103630
|
+
};
|
103631
|
+
const nextObsSetColor = obsSetColor.filter((d) => !isEqualOrPrefix(targetPath, d.path));
|
103632
|
+
const nextObsSetSelection = obsSetSelection.filter((d) => !isEqualOrPrefix(targetPath, d));
|
103633
|
+
const nextObsSetExpansion = prevObsSetExpansion.filter((d) => !isEqualOrPrefix(targetPath, d));
|
103634
|
+
setAdditionalObsSets(nextAdditionalObsSets);
|
103635
|
+
setObsSetColor(nextObsSetColor);
|
103636
|
+
setObsSetSelection(nextObsSetSelection);
|
103637
|
+
setObsSetExpansion(nextObsSetExpansion);
|
103641
103638
|
}, [
|
103642
|
-
|
103643
|
-
|
103644
|
-
|
103645
|
-
|
103646
|
-
|
103647
|
-
|
103648
|
-
|
103649
|
-
|
103639
|
+
additionalObsSets,
|
103640
|
+
obsSetColor,
|
103641
|
+
obsSetExpansion,
|
103642
|
+
obsSetSelection,
|
103643
|
+
setAdditionalObsSets,
|
103644
|
+
setObsSetColor,
|
103645
|
+
setObsSetSelection,
|
103646
|
+
setObsSetExpansion
|
103650
103647
|
]);
|
103651
103648
|
const onNodeView = useCallback((targetPath) => {
|
103652
103649
|
const setsToView = [];
|
103653
103650
|
function viewNode(node2, nodePath) {
|
103654
|
-
if (
|
103651
|
+
if (obsSetExpansion == null ? void 0 : obsSetExpansion.find((expandedPath) => isEqual$3(nodePath, expandedPath))) {
|
103655
103652
|
if (node2.children) {
|
103656
103653
|
node2.children.forEach((c2) => {
|
103657
103654
|
viewNode(c2, [...nodePath, c2.name]);
|
@@ -103663,105 +103660,105 @@ function ObsSetsManagerSubscriber(props) {
|
|
103663
103660
|
setsToView.push(nodePath);
|
103664
103661
|
}
|
103665
103662
|
}
|
103666
|
-
const targetNode = treeFindNodeByNamePath(
|
103663
|
+
const targetNode = treeFindNodeByNamePath(mergedObsSets, targetPath);
|
103667
103664
|
viewNode(targetNode, targetPath);
|
103668
|
-
|
103669
|
-
|
103670
|
-
}, [
|
103665
|
+
setObsSetSelection(setsToView);
|
103666
|
+
setObsSetColorEncoding();
|
103667
|
+
}, [obsSetExpansion, mergedObsSets, setObsSetColorEncoding, setObsSetSelection]);
|
103671
103668
|
const onCreateLevelZeroNode = useCallback(() => {
|
103672
|
-
const nextName = getNextNumberedNodeName(
|
103673
|
-
|
103674
|
-
...
|
103669
|
+
const nextName = getNextNumberedNodeName(additionalObsSets == null ? void 0 : additionalObsSets.tree, "My hierarchy ", "");
|
103670
|
+
setAdditionalObsSets({
|
103671
|
+
...additionalObsSets || treeInitialize(SETS_DATATYPE_OBS),
|
103675
103672
|
tree: [
|
103676
|
-
...
|
103673
|
+
...additionalObsSets ? additionalObsSets.tree : [],
|
103677
103674
|
{
|
103678
103675
|
name: nextName,
|
103679
103676
|
children: []
|
103680
103677
|
}
|
103681
103678
|
]
|
103682
103679
|
});
|
103683
|
-
}, [
|
103680
|
+
}, [additionalObsSets, setAdditionalObsSets]);
|
103684
103681
|
const onUnion = useCallback(() => {
|
103685
|
-
const newSet = treeToUnion(
|
103686
|
-
setObsSelection(newSet,
|
103682
|
+
const newSet = treeToUnion(mergedObsSets, obsSetSelection);
|
103683
|
+
setObsSelection(newSet, additionalObsSets, obsSetColor, setObsSetSelection, setAdditionalObsSets, setObsSetColor, setObsColorEncoding, "Union ");
|
103687
103684
|
}, [
|
103688
|
-
|
103689
|
-
|
103690
|
-
|
103691
|
-
|
103692
|
-
|
103693
|
-
|
103694
|
-
|
103695
|
-
|
103685
|
+
additionalObsSets,
|
103686
|
+
obsSetColor,
|
103687
|
+
obsSetSelection,
|
103688
|
+
mergedObsSets,
|
103689
|
+
setAdditionalObsSets,
|
103690
|
+
setObsColorEncoding,
|
103691
|
+
setObsSetColor,
|
103692
|
+
setObsSetSelection
|
103696
103693
|
]);
|
103697
103694
|
const onIntersection = useCallback(() => {
|
103698
|
-
const newSet = treeToIntersection(
|
103699
|
-
setObsSelection(newSet,
|
103695
|
+
const newSet = treeToIntersection(mergedObsSets, obsSetSelection);
|
103696
|
+
setObsSelection(newSet, additionalObsSets, obsSetColor, setObsSetSelection, setAdditionalObsSets, setObsSetColor, setObsColorEncoding, "Intersection ");
|
103700
103697
|
}, [
|
103701
|
-
|
103702
|
-
|
103703
|
-
|
103704
|
-
|
103705
|
-
|
103706
|
-
|
103707
|
-
|
103708
|
-
|
103698
|
+
additionalObsSets,
|
103699
|
+
obsSetColor,
|
103700
|
+
obsSetSelection,
|
103701
|
+
mergedObsSets,
|
103702
|
+
setAdditionalObsSets,
|
103703
|
+
setObsColorEncoding,
|
103704
|
+
setObsSetColor,
|
103705
|
+
setObsSetSelection
|
103709
103706
|
]);
|
103710
103707
|
const onComplement = useCallback(() => {
|
103711
|
-
const newSet = treeToComplement(
|
103712
|
-
setObsSelection(newSet,
|
103708
|
+
const newSet = treeToComplement(mergedObsSets, obsSetSelection, allCellIds);
|
103709
|
+
setObsSelection(newSet, additionalObsSets, obsSetColor, setObsSetSelection, setAdditionalObsSets, setObsSetColor, setObsColorEncoding, "Complement ");
|
103713
103710
|
}, [
|
103714
|
-
|
103711
|
+
additionalObsSets,
|
103715
103712
|
allCellIds,
|
103716
|
-
|
103717
|
-
|
103718
|
-
|
103719
|
-
|
103720
|
-
|
103721
|
-
|
103722
|
-
|
103713
|
+
obsSetColor,
|
103714
|
+
obsSetSelection,
|
103715
|
+
mergedObsSets,
|
103716
|
+
setAdditionalObsSets,
|
103717
|
+
setObsColorEncoding,
|
103718
|
+
setObsSetColor,
|
103719
|
+
setObsSetSelection
|
103723
103720
|
]);
|
103724
103721
|
const onImportTree = useCallback((treeToImport) => {
|
103725
|
-
const hasConflict = treesConflict(
|
103722
|
+
const hasConflict = treesConflict(mergedObsSets, treeToImport);
|
103726
103723
|
if (!hasConflict) {
|
103727
|
-
|
103728
|
-
...
|
103724
|
+
setAdditionalObsSets({
|
103725
|
+
...additionalObsSets || treeInitialize(SETS_DATATYPE_OBS),
|
103729
103726
|
tree: [
|
103730
|
-
...
|
103727
|
+
...additionalObsSets ? additionalObsSets.tree : [],
|
103731
103728
|
...treeToImport.tree
|
103732
103729
|
]
|
103733
103730
|
});
|
103734
|
-
const importAutoSetColors = initializeCellSetColor(treeToImport,
|
103735
|
-
|
103736
|
-
...
|
103731
|
+
const importAutoSetColors = initializeCellSetColor(treeToImport, obsSetColor);
|
103732
|
+
setObsSetColor([
|
103733
|
+
...obsSetColor,
|
103737
103734
|
...importAutoSetColors
|
103738
103735
|
]);
|
103739
103736
|
}
|
103740
103737
|
}, [
|
103741
|
-
|
103742
|
-
|
103743
|
-
|
103744
|
-
|
103745
|
-
|
103738
|
+
additionalObsSets,
|
103739
|
+
obsSetColor,
|
103740
|
+
mergedObsSets,
|
103741
|
+
setAdditionalObsSets,
|
103742
|
+
setObsSetColor
|
103746
103743
|
]);
|
103747
103744
|
const onExportLevelZeroNodeJSON = useCallback((nodePath) => {
|
103748
|
-
const { treeToExport, nodeName } = treeExportLevelZeroNode(
|
103745
|
+
const { treeToExport, nodeName } = treeExportLevelZeroNode(mergedObsSets, nodePath, SETS_DATATYPE_OBS, obsSetColor, theme);
|
103749
103746
|
downloadForUser(handleExportJSON(treeToExport), `${nodeName}_${packageJson.name}-${SETS_DATATYPE_OBS}-hierarchy.${FILE_EXTENSION_JSON}`);
|
103750
|
-
}, [
|
103747
|
+
}, [obsSetColor, mergedObsSets, theme]);
|
103751
103748
|
const onExportLevelZeroNodeTabular = useCallback((nodePath) => {
|
103752
|
-
const { treeToExport, nodeName } = treeExportLevelZeroNode(
|
103749
|
+
const { treeToExport, nodeName } = treeExportLevelZeroNode(mergedObsSets, nodePath, SETS_DATATYPE_OBS, obsSetColor, theme);
|
103753
103750
|
downloadForUser(handleExportTabular(treeToExport), `${nodeName}_${packageJson.name}-${SETS_DATATYPE_OBS}-hierarchy.${FILE_EXTENSION_TABULAR}`);
|
103754
|
-
}, [
|
103751
|
+
}, [obsSetColor, mergedObsSets, theme]);
|
103755
103752
|
const onExportSetJSON = useCallback((nodePath) => {
|
103756
|
-
const { setToExport, nodeName } = treeExportSet(
|
103753
|
+
const { setToExport, nodeName } = treeExportSet(mergedObsSets, nodePath);
|
103757
103754
|
downloadForUser(handleExportJSON(setToExport), `${nodeName}_${packageJson.name}-${SETS_DATATYPE_OBS}-set.${FILE_EXTENSION_JSON}`);
|
103758
|
-
}, [
|
103759
|
-
const manager2 = useMemo$1(() => jsxRuntimeExports.jsx(SetsManager, { setColor:
|
103760
|
-
|
103761
|
-
|
103762
|
-
|
103763
|
-
|
103764
|
-
|
103755
|
+
}, [mergedObsSets]);
|
103756
|
+
const manager2 = useMemo$1(() => jsxRuntimeExports.jsx(SetsManager, { setColor: obsSetColor, sets: cellSets, additionalSets: additionalObsSets, levelSelection: checkedLevel, setSelection: obsSetSelection, setExpansion: obsSetExpansion, hasColorEncoding: obsColorEncoding === "cellSetSelection", draggable: true, datatype: SETS_DATATYPE_OBS, onError: setWarning, onCheckNode, onExpandNode, onDropNode, onCheckLevel, onNodeSetColor, onNodeSetName, onNodeCheckNewName, onNodeRemove, onNodeView, onImportTree, onCreateLevelZeroNode, onExportLevelZeroNodeJSON, onExportLevelZeroNodeTabular, onExportSetJSON, onUnion, onIntersection, onComplement, hasCheckedSetsToUnion: (obsSetSelection == null ? void 0 : obsSetSelection.length) > 1, hasCheckedSetsToIntersect: (obsSetSelection == null ? void 0 : obsSetSelection.length) > 1, hasCheckedSetsToComplement: (obsSetSelection == null ? void 0 : obsSetSelection.length) > 0, theme }), [
|
103757
|
+
additionalObsSets,
|
103758
|
+
obsColorEncoding,
|
103759
|
+
obsSetColor,
|
103760
|
+
obsSetExpansion,
|
103761
|
+
obsSetSelection,
|
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103762
|
cellSets,
|
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103763
|
checkedLevel,
|
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103764
|
onCheckLevel,
|
@@ -209686,22 +209683,22 @@ async function getDecoder(fileDirectory) {
|
|
209686
209683
|
const Decoder = await importFn();
|
209687
209684
|
return new Decoder(fileDirectory);
|
209688
209685
|
}
|
209689
|
-
addDecoder([void 0, 1], () => import("./raw-
|
209690
|
-
addDecoder(5, () => import("./lzw-
|
209686
|
+
addDecoder([void 0, 1], () => import("./raw-Dcut_m0H.js").then((m2) => m2.default));
|
209687
|
+
addDecoder(5, () => import("./lzw-BSD1S9eX.js").then((m2) => m2.default));
|
209691
209688
|
addDecoder(6, () => {
|
209692
209689
|
throw new Error("old style JPEG compression is not supported.");
|
209693
209690
|
});
|
209694
|
-
addDecoder(7, () => import("./jpeg-
|
209695
|
-
addDecoder([8, 32946], () => import("./deflate-
|
209696
|
-
addDecoder(32773, () => import("./packbits-
|
209691
|
+
addDecoder(7, () => import("./jpeg-CP3IBASq.js").then((m2) => m2.default));
|
209692
|
+
addDecoder([8, 32946], () => import("./deflate-D4WUbeKy.js").then((m2) => m2.default));
|
209693
|
+
addDecoder(32773, () => import("./packbits-BjpOk8Mk.js").then((m2) => m2.default));
|
209697
209694
|
addDecoder(
|
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209695
|
34887,
|
209699
|
-
() => import("./lerc-
|
209696
|
+
() => import("./lerc-BAp1E_M5.js").then(async (m2) => {
|
209700
209697
|
await m2.zstd.init();
|
209701
209698
|
return m2;
|
209702
209699
|
}).then((m2) => m2.default)
|
209703
209700
|
);
|
209704
|
-
addDecoder(50001, () => import("./webimage-
|
209701
|
+
addDecoder(50001, () => import("./webimage-CmDy5gE2.js").then((m2) => m2.default));
|
209705
209702
|
function copyNewSize(array2, width2, height2, samplesPerPixel = 1) {
|
209706
209703
|
return new (Object.getPrototypeOf(array2)).constructor(width2 * height2 * samplesPerPixel);
|
209707
209704
|
}
|
@@ -232047,7 +232044,7 @@ const DEFAULT_FEATURE_AGGREGATION_STRATEGY$1 = "first";
|
|
232047
232044
|
function EmbeddingScatterplotSubscriber(props) {
|
232048
232045
|
const {
|
232049
232046
|
uuid: uuid2,
|
232050
|
-
coordinationScopes,
|
232047
|
+
coordinationScopes: coordinationScopesRaw,
|
232051
232048
|
closeButtonVisible,
|
232052
232049
|
downloadButtonVisible,
|
232053
232050
|
removeGridComponent,
|
@@ -232061,6 +232058,7 @@ function EmbeddingScatterplotSubscriber(props) {
|
|
232061
232058
|
sampleSetSelection: sampleSetSelectionFromProps
|
232062
232059
|
} = props;
|
232063
232060
|
const loaders = useLoaders();
|
232061
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
232064
232062
|
const setComponentHover = useSetComponentHover();
|
232065
232063
|
const setComponentViewInfo = useSetComponentViewInfo(uuid2);
|
232066
232064
|
const [{ dataset, obsType, featureType, featureValueType, sampleType, embeddingZoom: zoom2, embeddingTargetX: targetX2, embeddingTargetY: targetY2, embeddingTargetZ: targetZ, embeddingType: mapping, obsFilter: cellFilter, obsHighlight: cellHighlight, featureSelection: geneSelection, obsSetSelection: cellSetSelection, obsSetColor: cellSetColor, obsColorEncoding: cellColorEncoding, additionalObsSets: additionalCellSets, embeddingObsSetPolygonsVisible: cellSetPolygonsVisible, embeddingObsSetLabelsVisible: cellSetLabelsVisible, embeddingObsSetLabelSize: cellSetLabelSize, embeddingObsRadius: cellRadiusFixed, embeddingObsRadiusMode: cellRadiusMode, embeddingObsOpacity: cellOpacityFixed, embeddingObsOpacityMode: cellOpacityMode, featureValueColormap: geneExpressionColormap, featureValueColormapRange: geneExpressionColormapRange, tooltipsVisible, sampleSetSelection: sampleSetSelectionFromCoordination, sampleSetColor, embeddingPointsVisible, embeddingContoursVisible, embeddingContoursFilled, embeddingContourPercentiles: contourPercentiles, contourColorEncoding, contourColor, featureAggregationStrategy }, { setEmbeddingZoom: setZoom, setEmbeddingTargetX: setTargetX, setEmbeddingTargetY: setTargetY, setEmbeddingTargetZ: setTargetZ, setObsFilter: setCellFilter, setObsSetSelection: setCellSetSelection, setObsHighlight: setCellHighlight, setObsSetColor: setCellSetColor, setObsColorEncoding: setCellColorEncoding, setAdditionalObsSets: setAdditionalCellSets, setEmbeddingObsSetPolygonsVisible: setCellSetPolygonsVisible, setEmbeddingObsSetLabelsVisible: setCellSetLabelsVisible, setEmbeddingObsSetLabelSize: setCellSetLabelSize, setEmbeddingObsRadius: setCellRadiusFixed, setEmbeddingObsRadiusMode: setCellRadiusMode, setEmbeddingObsOpacity: setCellOpacityFixed, setEmbeddingObsOpacityMode: setCellOpacityMode, setFeatureValueColormap: setGeneExpressionColormap, setFeatureValueColormapRange: setGeneExpressionColormapRange, setTooltipsVisible, setEmbeddingPointsVisible, setEmbeddingContoursVisible, setEmbeddingContoursFilled, setEmbeddingContourPercentiles: setContourPercentiles, setContourColorEncoding, setFeatureAggregationStrategy }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.SCATTERPLOT], coordinationScopes);
|
@@ -232409,7 +232407,8 @@ function EmbeddingScatterplotSubscriber(props) {
|
|
232409
232407
|
}
|
232410
232408
|
function DualEmbeddingScatterplotSubscriber(props) {
|
232411
232409
|
var _a3, _b3;
|
232412
|
-
const { uuid: uuid2, coordinationScopes } = props;
|
232410
|
+
const { uuid: uuid2, coordinationScopes: coordinationScopesRaw } = props;
|
232411
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
232413
232412
|
const [{ embeddingType, sampleSetSelection }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.DUAL_SCATTERPLOT], coordinationScopes);
|
232414
232413
|
const isCaseCtrl = Array.isArray(sampleSetSelection) && sampleSetSelection.length === 2;
|
232415
232414
|
const caseSampleSetSelection = useMemo$1(() => (sampleSetSelection == null ? void 0 : sampleSetSelection[0]) ? [sampleSetSelection[0]] : null, [sampleSetSelection]);
|
@@ -232458,7 +232457,7 @@ function GatingScatterplotOptions(props) {
|
|
232458
232457
|
function GatingSubscriber(props) {
|
232459
232458
|
const {
|
232460
232459
|
uuid: uuid2,
|
232461
|
-
coordinationScopes,
|
232460
|
+
coordinationScopes: coordinationScopesRaw,
|
232462
232461
|
closeButtonVisible,
|
232463
232462
|
downloadButtonVisible,
|
232464
232463
|
removeGridComponent,
|
@@ -232470,6 +232469,7 @@ function GatingSubscriber(props) {
|
|
232470
232469
|
helpText = ViewHelpMapping.GATING
|
232471
232470
|
} = props;
|
232472
232471
|
const loaders = useLoaders();
|
232472
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
232473
232473
|
const setComponentHover = useSetComponentHover();
|
232474
232474
|
const setComponentViewInfo = useSetComponentViewInfo(uuid2);
|
232475
232475
|
const [{ dataset, obsType, featureType, featureValueType, embeddingZoom: zoom2, embeddingTargetX: targetX2, embeddingTargetY: targetY2, embeddingTargetZ: targetZ, obsFilter: cellFilter, obsHighlight: cellHighlight, obsSetSelection: cellSetSelection, obsSetColor: cellSetColor, obsColorEncoding: cellColorEncoding, additionalObsSets: additionalCellSets, embeddingObsSetPolygonsVisible: cellSetPolygonsVisible, embeddingObsSetLabelsVisible: cellSetLabelsVisible, embeddingObsSetLabelSize: cellSetLabelSize, embeddingObsRadius: cellRadiusFixed, embeddingObsRadiusMode: cellRadiusMode, embeddingObsOpacity: cellOpacityFixed, embeddingObsOpacityMode: cellOpacityMode, featureValueColormap: geneExpressionColormap, featureValueColormapRange: geneExpressionColormapRange, featureSelection: gatingFeatureSelectionColor, featureValueTransform, featureValueTransformCoefficient, gatingFeatureSelectionX, gatingFeatureSelectionY }, { setEmbeddingZoom: setZoom, setEmbeddingTargetX: setTargetX, setEmbeddingTargetY: setTargetY, setEmbeddingTargetZ: setTargetZ, setObsFilter: setCellFilter, setObsSetSelection: setCellSetSelection, setObsHighlight: setCellHighlight, setObsSetColor: setCellSetColor, setObsColorEncoding: setCellColorEncoding, setAdditionalObsSets: setAdditionalCellSets, setEmbeddingObsSetPolygonsVisible: setCellSetPolygonsVisible, setEmbeddingObsSetLabelsVisible: setCellSetLabelsVisible, setEmbeddingObsSetLabelSize: setCellSetLabelSize, setEmbeddingObsRadius: setCellRadiusFixed, setEmbeddingObsRadiusMode: setCellRadiusMode, setEmbeddingObsOpacity: setCellOpacityFixed, setEmbeddingObsOpacityMode: setCellOpacityMode, setFeatureValueColormap: setGeneExpressionColormap, setFeatureValueColormapRange: setGeneExpressionColormapRange, setFeatureValueTransform, setFeatureValueTransformCoefficient, setGatingFeatureSelectionX, setGatingFeatureSelectionY }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.GATING], coordinationScopes);
|
@@ -252854,6 +252854,7 @@ class Spatial2 extends AbstractSpatialOrScatterplot {
|
|
252854
252854
|
contrastLimits,
|
252855
252855
|
selections,
|
252856
252856
|
channelsVisible,
|
252857
|
+
visible,
|
252857
252858
|
opacity: layerCoordination[CoordinationType$1.SPATIAL_LAYER_OPACITY],
|
252858
252859
|
colormap,
|
252859
252860
|
modelMatrix: layerDefModelMatrix,
|
@@ -253595,7 +253596,7 @@ class ErrorBoundary extends React__default.Component {
|
|
253595
253596
|
}
|
253596
253597
|
}
|
253597
253598
|
const LazySpatialThree = React__default.lazy(async () => {
|
253598
|
-
const { SpatialWrapper: SpatialWrapper2 } = await import("./index-
|
253599
|
+
const { SpatialWrapper: SpatialWrapper2 } = await import("./index-DTVSAAC6.js");
|
253599
253600
|
return { default: SpatialWrapper2 };
|
253600
253601
|
});
|
253601
253602
|
const SpatialThreeAdapter = React__default.forwardRef((props, ref2) => jsxRuntimeExports.jsx("div", { ref: ref2, style: { width: "100%", height: "100%" }, children: jsxRuntimeExports.jsx(ErrorBoundary, { children: jsxRuntimeExports.jsx(Suspense, { fallback: jsxRuntimeExports.jsx("div", { children: "Loading..." }), children: jsxRuntimeExports.jsx(LazySpatialThree, { ...props }) }) }) }));
|
@@ -255099,8 +255100,9 @@ function HeatmapOptions(props) {
|
|
255099
255100
|
}, value: geneExpressionColormapRange, onChange: handleColormapRangeChangeDebounced, getAriaLabel: (index2) => index2 === 0 ? "Low value colormap range slider" : "High value colormap range slider", id: `heatmap-gene-expression-colormap-range-${heatmapOptionsId}`, valueLabelDisplay: "auto", step: 5e-3, min: 0, max: 1 }) })] })] });
|
255100
255101
|
}
|
255101
255102
|
function HeatmapSubscriber(props) {
|
255102
|
-
const { uuid: uuid2, coordinationScopes, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, transpose: transpose2, observationsLabelOverride, variablesLabelOverride, title: title2 = "Heatmap", helpText = ViewHelpMapping.HEATMAP } = props;
|
255103
|
+
const { uuid: uuid2, coordinationScopes: coordinationScopesRaw, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, transpose: transpose2, observationsLabelOverride, variablesLabelOverride, title: title2 = "Heatmap", helpText = ViewHelpMapping.HEATMAP } = props;
|
255103
255104
|
const loaders = useLoaders();
|
255105
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
255104
255106
|
const setComponentHover = useSetComponentHover();
|
255105
255107
|
const setComponentViewInfo = useSetComponentViewInfo(uuid2);
|
255106
255108
|
const [{ dataset, obsType, featureType, featureValueType, heatmapZoomX: zoomX, heatmapTargetX: targetX2, heatmapTargetY: targetY2, featureSelection: geneSelection, obsHighlight: cellHighlight, featureHighlight: geneHighlight, obsSetSelection: cellSetSelection, obsSetColor: cellSetColor, additionalObsSets: additionalCellSets, featureValueColormap: geneExpressionColormap, featureValueColormapRange: geneExpressionColormapRange, tooltipsVisible }, { setHeatmapZoomX: setZoomX, setHeatmapZoomY: setZoomY, setHeatmapTargetX: setTargetX, setHeatmapTargetY: setTargetY, setObsHighlight: setCellHighlight, setFeatureSelection: setGeneSelection, setObsColorEncoding: setCellColorEncoding, setFeatureHighlight: setGeneHighlight, setObsSetSelection: setCellSetSelection, setObsSetColor: setCellSetColor, setFeatureValueColormapRange: setGeneExpressionColormapRange, setFeatureValueColormap: setGeneExpressionColormap, setTooltipsVisible }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.HEATMAP], coordinationScopes);
|
@@ -261915,7 +261917,7 @@ function FeatureList(props) {
|
|
261915
261917
|
[primaryColumnName]
|
261916
261918
|
];
|
261917
261919
|
}, [showFeatureTable, primaryColumnName, hasFeatureLabels]);
|
261918
|
-
return jsxRuntimeExports.jsxs(jsxRuntimeExports.Fragment, { children: [jsxRuntimeExports.jsx("input", { className: classes2.searchBar, type: "text", placeholder: "Search", value: searchTerm, onChange: handleChange }), jsxRuntimeExports.jsx(SelectableTable, { columns: columns2, columnLabels, data: data2, hasColorEncoding, idKey: "key", valueKey: "value", onChange, allowMultiple: enableMultiSelect, allowUncheck: enableMultiSelect, showTableHead: columnLabels.length > 1, width: width2, height: height2 - 34 })] });
|
261920
|
+
return width2 > 0 && height2 > 0 ? jsxRuntimeExports.jsxs(jsxRuntimeExports.Fragment, { children: [jsxRuntimeExports.jsx("input", { className: classes2.searchBar, type: "text", placeholder: "Search", value: searchTerm, onChange: handleChange }), jsxRuntimeExports.jsx(SelectableTable, { columns: columns2, columnLabels, data: data2, hasColorEncoding, idKey: "key", valueKey: "value", onChange, allowMultiple: enableMultiSelect, allowUncheck: enableMultiSelect, showTableHead: columnLabels.length > 1, width: width2, height: height2 - 34 })] }) : null;
|
261919
261921
|
}
|
261920
261922
|
function FeatureListOptions(props) {
|
261921
261923
|
const { children: children3, featureListSort, setFeatureListSort, featureListSortKey, setFeatureListSortKey, showFeatureTable, setShowFeatureTable, hasFeatureLabels, primaryColumnName } = props;
|
@@ -261951,8 +261953,9 @@ const useStyles$k = makeStyles()((theme) => ({
|
|
261951
261953
|
}
|
261952
261954
|
}));
|
261953
261955
|
function FeatureListSubscriber(props) {
|
261954
|
-
const { coordinationScopes, removeGridComponent, variablesLabelOverride, theme, title: titleOverride, enableMultiSelect = false, showTable = false, sort: sort2 = "alphabetical", sortKey: sortKey2 = null, closeButtonVisible, downloadButtonVisible, helpText = ViewHelpMapping.FEATURE_LIST } = props;
|
261956
|
+
const { coordinationScopes: coordinationScopesRaw, removeGridComponent, variablesLabelOverride, theme, title: titleOverride, enableMultiSelect = false, showTable = false, sort: sort2 = "alphabetical", sortKey: sortKey2 = null, closeButtonVisible, downloadButtonVisible, helpText = ViewHelpMapping.FEATURE_LIST } = props;
|
261955
261957
|
const loaders = useLoaders();
|
261958
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
261956
261959
|
const [width2, height2, containerRef] = useGridItemSize();
|
261957
261960
|
const { classes: classes2 } = useStyles$k();
|
261958
261961
|
const [{ dataset, obsType, featureType, featureSelection: geneSelection, featureFilter: geneFilter, obsColorEncoding: cellColorEncoding }, { setFeatureSelection: setGeneSelection, setFeatureFilter: setGeneFilter, setFeatureHighlight: setGeneHighlight, setObsColorEncoding: setCellColorEncoding }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.FEATURE_LIST], coordinationScopes);
|
@@ -265185,7 +265188,8 @@ function Status(props) {
|
|
265185
265188
|
return messages2;
|
265186
265189
|
}
|
265187
265190
|
function StatusSubscriber(props) {
|
265188
|
-
const { coordinationScopes, closeButtonVisible, removeGridComponent, theme, title: title2 = "Status", helpText = ViewHelpMapping.STATUS } = props;
|
265191
|
+
const { coordinationScopes: coordinationScopesRaw, closeButtonVisible, removeGridComponent, theme, title: title2 = "Status", helpText = ViewHelpMapping.STATUS } = props;
|
265192
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
265189
265193
|
const [{ obsHighlight: cellHighlight, featureHighlight: geneHighlight, moleculeHighlight }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.STATUS], coordinationScopes);
|
265190
265194
|
const warn2 = useWarning();
|
265191
265195
|
const infos = [
|
@@ -266989,7 +266993,7 @@ function HiglassGlobalStyles(props) {
|
|
266989
266993
|
}
|
266990
266994
|
register({ dataFetcher: ZarrMultivecDataFetcher_default, config: ZarrMultivecDataFetcher_default.config }, { pluginType: "dataFetcher" });
|
266991
266995
|
const LazyHiGlassComponent = React__default.lazy(async () => {
|
266992
|
-
const { HiGlassComponent } = await import("./higlass-
|
266996
|
+
const { HiGlassComponent } = await import("./higlass-B5A5XLB4.js");
|
266993
266997
|
return { default: HiGlassComponent };
|
266994
266998
|
});
|
266995
266999
|
const HG_SIZE = 800;
|
@@ -266997,7 +267001,8 @@ function setStoreRootForHiGlass(url, storeRoot) {
|
|
266997
267001
|
ZarrMultivecDataFetcher_default.urlToStoreRoot[url] = storeRoot;
|
266998
267002
|
}
|
266999
267003
|
function HiGlassLazy(props) {
|
267000
|
-
const { coordinationScopes, theme, hgViewConfig: hgViewConfigProp, hgOptions: hgOptionsProp, genomeSize = 31e8, height: height2 } = props;
|
267004
|
+
const { coordinationScopes: coordinationScopesRaw, theme, hgViewConfig: hgViewConfigProp, hgOptions: hgOptionsProp, genomeSize = 31e8, height: height2 } = props;
|
267005
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
267001
267006
|
const [{ genomicZoomX, genomicZoomY, genomicTargetX, genomicTargetY }, { setGenomicZoomX, setGenomicZoomY, setGenomicTargetX, setGenomicTargetY }] = useCoordination(COMPONENT_COORDINATION_TYPES.higlass, coordinationScopes);
|
267002
267007
|
const [width2, computedHeight, containerRef] = useGridItemSize();
|
267003
267008
|
const [hgInstance, setHgInstance] = useState();
|
@@ -267155,9 +267160,10 @@ const REFERENCE_STATIC_FILES = {
|
|
267155
267160
|
}
|
267156
267161
|
};
|
267157
267162
|
function GenomicProfilesSubscriber(props) {
|
267158
|
-
const { coordinationScopes, theme, closeButtonVisible, downloadButtonVisible, removeGridComponent, profileTrackUidKey = "path", profileTrackNameKey = null, higlassServer = "https://higlass.io/api/v1", assembly = "hg38", title: title2 = "Genomic Profiles", showGeneAnnotations = true, helpText = ViewHelpMapping.GENOMIC_PROFILES } = props;
|
267163
|
+
const { coordinationScopes: coordinationScopesRaw, theme, closeButtonVisible, downloadButtonVisible, removeGridComponent, profileTrackUidKey = "path", profileTrackNameKey = null, higlassServer = "https://higlass.io/api/v1", assembly = "hg38", title: title2 = "Genomic Profiles", showGeneAnnotations = true, helpText = ViewHelpMapping.GENOMIC_PROFILES } = props;
|
267159
267164
|
const [width2, height2, containerRef] = useGridItemSize();
|
267160
267165
|
const loaders = useLoaders();
|
267166
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
267161
267167
|
const [{ dataset, obsSetColor: cellSetColor, obsSetSelection: cellSetSelection }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.GENOMIC_PROFILES], coordinationScopes);
|
267162
267168
|
const [genomicProfilesData, genomicProfilesStatus, genomicProfilesUrls, genomicProfilesError] = useGenomicProfilesData(loaders, dataset, true, {}, {}, {});
|
267163
267169
|
const errors = [
|
@@ -269933,7 +269939,7 @@ function NeuroglancerGlobalStyles(props) {
|
|
269933
269939
|
const { classes: classes2 } = props;
|
269934
269940
|
return jsxRuntimeExports.jsxs(jsxRuntimeExports.Fragment, { children: [jsxRuntimeExports.jsx(GlobalStyles$3, { styles: globalNeuroglancerCss }), jsxRuntimeExports.jsx(ScopedGlobalStyles, { styles: globalNeuroglancerStyles, parentClassName: classes2.neuroglancerWrapper })] });
|
269935
269941
|
}
|
269936
|
-
const LazyReactNeuroglancer = React__default.lazy(() => import("./ReactNeuroglancer-
|
269942
|
+
const LazyReactNeuroglancer = React__default.lazy(() => import("./ReactNeuroglancer-BEVcmeJW.js"));
|
269937
269943
|
function createWorker() {
|
269938
269944
|
return new WorkerFactory();
|
269939
269945
|
}
|
@@ -270058,7 +270064,9 @@ function normalizeQuaternion(q) {
|
|
270058
270064
|
return q.map((value2) => value2 / length2);
|
270059
270065
|
}
|
270060
270066
|
function NeuroglancerSubscriber(props) {
|
270061
|
-
const { coordinationScopes, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, title: title2 = "Neuroglancer", helpText = ViewHelpMapping.NEUROGLANCER, viewerState: initialViewerState } = props;
|
270067
|
+
const { coordinationScopes: coordinationScopesRaw, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, title: title2 = "Neuroglancer", helpText = ViewHelpMapping.NEUROGLANCER, viewerState: initialViewerState } = props;
|
270068
|
+
const loaders = useLoaders();
|
270069
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
270062
270070
|
const [{
|
270063
270071
|
dataset,
|
270064
270072
|
obsType,
|
@@ -270089,7 +270097,6 @@ function NeuroglancerSubscriber(props) {
|
|
270089
270097
|
setSpatialZoom: setZoom
|
270090
270098
|
}] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.NEUROGLANCER], coordinationScopes);
|
270091
270099
|
const { classes: classes2 } = useStyles$4();
|
270092
|
-
const loaders = useLoaders();
|
270093
270100
|
const [{ obsSets: cellSets }] = useObsSetsData(loaders, dataset, false, { setObsSetSelection: setCellSetSelection, setObsSetColor: setCellSetColor }, { cellSetSelection, obsSetColor: cellSetColor }, { obsType });
|
270094
270101
|
const [{ obsIndex }] = useObsEmbeddingData(loaders, dataset, true, {}, {}, { obsType, embeddingType: mapping });
|
270095
270102
|
const handleStateUpdate = useCallback((newState) => {
|
@@ -272486,9 +272493,10 @@ function useExpressionByCellSet(sampleEdges, sampleSets, sampleSetSelection, exp
|
|
272486
272493
|
}
|
272487
272494
|
function CellSetExpressionPlotSubscriber(props) {
|
272488
272495
|
var _a3;
|
272489
|
-
const { coordinationScopes, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, title: title2, xAxisTitle, jitter: jitter2 = false, yMin = null, yUnits = null, helpText = ViewHelpMapping.OBS_SET_FEATURE_VALUE_DISTRIBUTION } = props;
|
272496
|
+
const { coordinationScopes: coordinationScopesRaw, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, title: title2, xAxisTitle, jitter: jitter2 = false, yMin = null, yUnits = null, helpText = ViewHelpMapping.OBS_SET_FEATURE_VALUE_DISTRIBUTION } = props;
|
272490
272497
|
const { classes: classes2 } = useStyles$3();
|
272491
272498
|
const loaders = useLoaders();
|
272499
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
272492
272500
|
const [{ dataset, obsType, featureType, featureValueType, featureSelection: geneSelection, featureValueTransform, featureValueTransformCoefficient, obsSetSelection: cellSetSelection, obsSetColor: cellSetColor, additionalObsSets: additionalCellSets, sampleType, sampleSetSelection, sampleSetColor, featureAggregationStrategy }, { setFeatureValueTransform, setFeatureValueTransformCoefficient, setSampleSetColor, setFeatureAggregationStrategy }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.OBS_SET_FEATURE_VALUE_DISTRIBUTION], coordinationScopes);
|
272493
272501
|
const [width2, height2, containerRef] = useGridItemSize();
|
272494
272502
|
const transformOptions = VALUE_TRANSFORM_OPTIONS;
|
@@ -323251,9 +323259,10 @@ function CellSetSizesPlot(props) {
|
|
323251
323259
|
return jsxRuntimeExports.jsx(VegaPlot, { data: data2, spec, signalListeners, getTooltipText });
|
323252
323260
|
}
|
323253
323261
|
function CellSetSizesPlotSubscriber(props) {
|
323254
|
-
const { coordinationScopes, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, title: titleOverride, helpText = ViewHelpMapping.OBS_SET_SIZES } = props;
|
323262
|
+
const { coordinationScopes: coordinationScopesRaw, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, title: titleOverride, helpText = ViewHelpMapping.OBS_SET_SIZES } = props;
|
323255
323263
|
const { classes: classes2 } = useStyles$3();
|
323256
323264
|
const loaders = useLoaders();
|
323265
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
323257
323266
|
const [{ dataset, obsType, obsSetSelection: cellSetSelection, obsSetColor: cellSetColor, additionalObsSets: additionalCellSets, obsSetExpansion: cellSetExpansion }, { setObsSetSelection: setCellSetSelection, setObsSetColor: setCellSetColor }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.OBS_SET_SIZES], coordinationScopes);
|
323258
323267
|
const title2 = titleOverride || `${capitalize$3(obsType)} Set Sizes`;
|
323259
323268
|
const [width2, height2, containerRef] = useGridItemSize();
|
@@ -323360,9 +323369,10 @@ function ExpressionHistogram(props) {
|
|
323360
323369
|
return jsxRuntimeExports.jsx(VegaPlot, { data: data2, signalListeners, spec });
|
323361
323370
|
}
|
323362
323371
|
function ExpressionHistogramSubscriber(props) {
|
323363
|
-
const { coordinationScopes, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, helpText = ViewHelpMapping.FEATURE_VALUE_HISTOGRAM } = props;
|
323372
|
+
const { coordinationScopes: coordinationScopesRaw, closeButtonVisible, downloadButtonVisible, removeGridComponent, theme, helpText = ViewHelpMapping.FEATURE_VALUE_HISTOGRAM } = props;
|
323364
323373
|
const { classes: classes2 } = useStyles$3();
|
323365
323374
|
const loaders = useLoaders();
|
323375
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
323366
323376
|
const [{ dataset, obsType, featureType, featureValueType, featureSelection: geneSelection, additionalObsSets: additionalCellSets, obsSetColor: cellSetColor }, { setAdditionalObsSets: setAdditionalCellSets, setObsSetColor: setCellSetColor, setObsColorEncoding: setCellColorEncoding, setObsSetSelection: setCellSetSelection }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.FEATURE_VALUE_HISTOGRAM], coordinationScopes);
|
323367
323377
|
const [width2, height2, containerRef] = useGridItemSize();
|
323368
323378
|
const [{ obsIndex, featureIndex, obsFeatureMatrix }, matrixStatus, matrixUrls, matrixError] = useObsFeatureMatrixData(loaders, dataset, true, {}, {}, { obsType, featureType, featureValueType });
|
@@ -323627,9 +323637,10 @@ function useExpressionSummaries(sampleEdges, sampleSets, sampleSetSelection, exp
|
|
323627
323637
|
}
|
323628
323638
|
function DotPlotSubscriber(props) {
|
323629
323639
|
var _a3;
|
323630
|
-
const { coordinationScopes, removeGridComponent, theme, title: title2 = "Dot Plot", transpose: transpose2 = true, helpText = ViewHelpMapping.DOT_PLOT } = props;
|
323640
|
+
const { coordinationScopes: coordinationScopesRaw, removeGridComponent, theme, title: title2 = "Dot Plot", transpose: transpose2 = true, helpText = ViewHelpMapping.DOT_PLOT } = props;
|
323631
323641
|
const { classes: classes2 } = useStyles$3();
|
323632
323642
|
const loaders = useLoaders();
|
323643
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
323633
323644
|
const [{
|
323634
323645
|
dataset,
|
323635
323646
|
obsType,
|
@@ -323806,9 +323817,10 @@ function FeatureBarPlot(props) {
|
|
323806
323817
|
} });
|
323807
323818
|
}
|
323808
323819
|
function FeatureBarPlotSubscriber(props) {
|
323809
|
-
const { coordinationScopes, removeGridComponent, theme, yMin = 0, yUnits = null, helpText = ViewHelpMapping.FEATURE_BAR_PLOT } = props;
|
323820
|
+
const { coordinationScopes: coordinationScopesRaw, removeGridComponent, theme, yMin = 0, yUnits = null, helpText = ViewHelpMapping.FEATURE_BAR_PLOT } = props;
|
323810
323821
|
const { classes: classes2 } = useStyles$3();
|
323811
323822
|
const loaders = useLoaders();
|
323823
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
323812
323824
|
const [{ dataset, obsType, featureType, featureValueType, featureSelection: geneSelection, featureValueTransform, featureValueTransformCoefficient, obsHighlight: cellHighlight, additionalObsSets: additionalCellSets, obsSetSelection: cellSetSelection, obsSetColor: cellSetColor }, { setObsSetSelection: setCellSetSelection, setObsHighlight: setCellHighlight, setObsSetColor: setCellSetColor, setObsColorEncoding: setCellColorEncoding, setAdditionalObsSets: setAdditionalCellSets }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.FEATURE_BAR_PLOT], coordinationScopes);
|
323813
323825
|
const [width2, height2, containerRef] = useGridItemSize();
|
323814
323826
|
const [
|
@@ -324018,9 +324030,10 @@ function TreemapOptions(props) {
|
|
324018
324030
|
}
|
324019
324031
|
const DEFAULT_HIERARCHY_LEVELS = ["obsSet", "sampleSet"];
|
324020
324032
|
function TreemapSubscriber(props) {
|
324021
|
-
const { coordinationScopes, removeGridComponent, theme, helpText = ViewHelpMapping.TREEMAP } = props;
|
324033
|
+
const { coordinationScopes: coordinationScopesRaw, removeGridComponent, theme, helpText = ViewHelpMapping.TREEMAP } = props;
|
324022
324034
|
const { classes: classes2 } = useStyles$3();
|
324023
324035
|
const loaders = useLoaders();
|
324036
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
324024
324037
|
const [{ dataset, obsType, featureType, featureValueType, obsFilter, obsHighlight, obsSetSelection, obsSetFilter, obsSelection, obsSelectionMode, obsSetHighlight, obsSetColor, obsColorEncoding, additionalObsSets, sampleType, sampleSetSelection, sampleSetFilter, sampleSetColor, sampleSelection, sampleSelectionMode, sampleFilter, sampleFilterMode, sampleHighlight, hierarchyLevels }, { setObsFilter, setObsSelection: setObsSelection2, setObsSetFilter, setObsSetSelection, setObsSelectionMode, setObsFilterMode, setObsHighlight, setObsSetColor, setObsColorEncoding, setAdditionalObsSets, setSampleFilter, setSampleSetFilter, setSampleFilterMode, setSampleSelection, setSampleSetSelection, setSampleSelectionMode, setSampleHighlight, setSampleSetColor, setHierarchyLevels }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.TREEMAP], coordinationScopes);
|
324025
324038
|
const [width2, height2, containerRef] = useGridItemSize();
|
324026
324039
|
const [{ obsIndex }, matrixIndicesStatus, matrixIndicesUrls, matrixIndicesError] = useObsFeatureMatrixIndices(loaders, dataset, false, { obsType, featureType, featureValueType });
|
@@ -324266,9 +324279,10 @@ function VolcanoPlotOptions(props) {
|
|
324266
324279
|
}, value: featurePointFoldChangeThreshold, onChange: handlePointFoldChangeChange, "aria-label": "Volcano plot point fold-change threshold slider", id: `volcano-point-fc-${volcanoOptionsId}`, valueLabelDisplay: "auto", step: 0.5, min: 0, max: 50 }) })] })] });
|
324267
324280
|
}
|
324268
324281
|
function VolcanoPlotSubscriber(props) {
|
324269
|
-
const { title: title2 = "Volcano Plot", coordinationScopes, removeGridComponent, theme, helpText = ViewHelpMapping.VOLCANO_PLOT } = props;
|
324282
|
+
const { title: title2 = "Volcano Plot", coordinationScopes: coordinationScopesRaw, removeGridComponent, theme, helpText = ViewHelpMapping.VOLCANO_PLOT } = props;
|
324270
324283
|
const { classes: classes2 } = useStyles$3();
|
324271
324284
|
const loaders = useLoaders();
|
324285
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
324272
324286
|
const [{ dataset, obsType, sampleType, featureType, featureValueType, obsFilter: cellFilter, obsHighlight: cellHighlight, obsSetSelection, obsSetColor, obsColorEncoding: cellColorEncoding, additionalObsSets: additionalCellSets, featurePointSignificanceThreshold, featurePointFoldChangeThreshold, featureLabelSignificanceThreshold, featureLabelFoldChangeThreshold, featureValueTransform, featureValueTransformCoefficient, gatingFeatureSelectionX, gatingFeatureSelectionY, featureSelection, sampleSetSelection, sampleSetColor }, { setObsFilter: setCellFilter, setObsSetSelection, setObsHighlight: setCellHighlight, setObsSetColor: setCellSetColor, setObsColorEncoding: setCellColorEncoding, setAdditionalObsSets: setAdditionalCellSets, setFeaturePointSignificanceThreshold, setFeaturePointFoldChangeThreshold, setFeatureLabelSignificanceThreshold, setFeatureLabelFoldChangeThreshold, setFeatureValueTransform, setFeatureValueTransformCoefficient, setGatingFeatureSelectionX, setGatingFeatureSelectionY, setFeatureSelection, setSampleSetSelection, setSampleSetColor }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.VOLCANO_PLOT], coordinationScopes);
|
324273
324287
|
const [width2, height2, containerRef] = useGridItemSize();
|
324274
324288
|
const obsSetsLoader = useMatchingLoader(loaders, dataset, DataType$3.OBS_SETS, { obsType });
|
@@ -324473,9 +324487,10 @@ function CellSetCompositionBarPlot(props) {
|
|
324473
324487
|
return jsxRuntimeExports.jsx(VegaPlot, { data: computedData, spec, signalListeners, getTooltipText });
|
324474
324488
|
}
|
324475
324489
|
function CellSetCompositionBarPlotSubscriber(props) {
|
324476
|
-
const { coordinationScopes, removeGridComponent, theme, helpText = ViewHelpMapping.OBS_SET_COMPOSITION_BAR_PLOT } = props;
|
324490
|
+
const { coordinationScopes: coordinationScopesRaw, removeGridComponent, theme, helpText = ViewHelpMapping.OBS_SET_COMPOSITION_BAR_PLOT } = props;
|
324477
324491
|
const { classes: classes2 } = useStyles$3();
|
324478
324492
|
const loaders = useLoaders();
|
324493
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
324479
324494
|
const [{ dataset, obsType, sampleType, featureType, featureValueType, obsFilter: cellFilter, obsHighlight: cellHighlight, obsSetSelection, obsSetColor, obsColorEncoding: cellColorEncoding, additionalObsSets: additionalCellSets, featurePointSignificanceThreshold, featurePointFoldChangeThreshold, featureLabelSignificanceThreshold, featureLabelFoldChangeThreshold, featureValueTransform, featureValueTransformCoefficient, gatingFeatureSelectionX, gatingFeatureSelectionY, featureSelection, sampleSetSelection, sampleSetColor }, { setObsFilter: setCellFilter, setObsSetSelection, setObsHighlight: setCellHighlight, setObsSetColor: setCellSetColor, setObsColorEncoding: setCellColorEncoding, setAdditionalObsSets: setAdditionalCellSets, setFeaturePointSignificanceThreshold, setFeaturePointFoldChangeThreshold, setFeatureLabelSignificanceThreshold, setFeatureLabelFoldChangeThreshold, setFeatureValueTransform, setFeatureValueTransformCoefficient, setGatingFeatureSelectionX, setGatingFeatureSelectionY, setFeatureSelection, setSampleSetSelection, setSampleSetColor }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.OBS_SET_COMPOSITION_BAR_PLOT], coordinationScopes);
|
324480
324495
|
const [width2, height2, containerRef] = useGridItemSize();
|
324481
324496
|
const obsSetsLoader = useMatchingLoader(loaders, dataset, DataType$3.OBS_SETS, { obsType });
|
@@ -324657,9 +324672,10 @@ function FeatureSetEnrichmentBarPlot(props) {
|
|
324657
324672
|
return jsxRuntimeExports.jsx(VegaPlot, { data: computedData, spec, signalListeners, getTooltipText });
|
324658
324673
|
}
|
324659
324674
|
function FeatureSetEnrichmentBarPlotSubscriber(props) {
|
324660
|
-
const { coordinationScopes, removeGridComponent, theme, helpText = ViewHelpMapping.FEATURE_SET_ENRICHMENT_BAR_PLOT } = props;
|
324675
|
+
const { coordinationScopes: coordinationScopesRaw, removeGridComponent, theme, helpText = ViewHelpMapping.FEATURE_SET_ENRICHMENT_BAR_PLOT } = props;
|
324661
324676
|
const { classes: classes2 } = useStyles$3();
|
324662
324677
|
const loaders = useLoaders();
|
324678
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
324663
324679
|
const transformFeature2 = useAsyncFunction(AsyncFunctionType.TRANSFORM_FEATURE);
|
324664
324680
|
const [{ dataset, obsType, sampleType, featureType, featureValueType, obsFilter: cellFilter, obsHighlight: cellHighlight, obsSetSelection, obsSetColor, obsColorEncoding: cellColorEncoding, additionalObsSets: additionalCellSets, featurePointSignificanceThreshold, featurePointFoldChangeThreshold, featureLabelSignificanceThreshold, featureLabelFoldChangeThreshold, featureValueTransform, featureValueTransformCoefficient, gatingFeatureSelectionX, gatingFeatureSelectionY, featureSelection, sampleSetSelection, sampleSetColor }, { setObsFilter: setCellFilter, setObsSetSelection, setObsHighlight: setCellHighlight, setObsSetColor: setCellSetColor, setObsColorEncoding: setCellColorEncoding, setAdditionalObsSets: setAdditionalCellSets, setFeaturePointSignificanceThreshold, setFeaturePointFoldChangeThreshold, setFeatureLabelSignificanceThreshold, setFeatureLabelFoldChangeThreshold, setFeatureValueTransform, setFeatureValueTransformCoefficient, setGatingFeatureSelectionX, setGatingFeatureSelectionY, setFeatureSelection, setSampleSetSelection, setSampleSetColor }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.FEATURE_SET_ENRICHMENT_BAR_PLOT], coordinationScopes);
|
324665
324681
|
const [width2, height2, containerRef] = useGridItemSize();
|
@@ -324788,8 +324804,9 @@ function FeatureStatsTable(props) {
|
|
324788
324804
|
});
|
324789
324805
|
}
|
324790
324806
|
function FeatureStatsTableSubscriber(props) {
|
324791
|
-
const { title: title2 = "Differential Expression Results", coordinationScopes, removeGridComponent, theme, helpText = ViewHelpMapping.FEATURE_STATS_TABLE } = props;
|
324807
|
+
const { title: title2 = "Differential Expression Results", coordinationScopes: coordinationScopesRaw, removeGridComponent, theme, helpText = ViewHelpMapping.FEATURE_STATS_TABLE } = props;
|
324792
324808
|
const loaders = useLoaders();
|
324809
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
324793
324810
|
const [{ dataset, obsType, sampleType, featureType, featureValueType, obsFilter: cellFilter, obsHighlight: cellHighlight, obsSetSelection, obsSetColor, obsColorEncoding: cellColorEncoding, additionalObsSets: additionalCellSets, featurePointSignificanceThreshold, featurePointFoldChangeThreshold, featureValueTransform, featureValueTransformCoefficient, gatingFeatureSelectionX, gatingFeatureSelectionY, featureSelection, sampleSetSelection, sampleSetColor }, { setObsFilter: setCellFilter, setObsSetSelection, setObsHighlight: setCellHighlight, setObsSetColor: setCellSetColor, setObsColorEncoding: setCellColorEncoding, setAdditionalObsSets: setAdditionalCellSets, setFeaturePointSignificanceThreshold, setFeaturePointFoldChangeThreshold, setFeatureValueTransform, setFeatureValueTransformCoefficient, setGatingFeatureSelectionX, setGatingFeatureSelectionY, setFeatureSelection, setSampleSetSelection, setSampleSetColor }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.FEATURE_STATS_TABLE], coordinationScopes);
|
324794
324811
|
const obsSetsLoader = useMatchingLoader(loaders, dataset, DataType$3.OBS_SETS, { obsType });
|
324795
324812
|
const sampleSetsLoader = useMatchingLoader(loaders, dataset, DataType$3.SAMPLE_SETS, { sampleType });
|
@@ -328200,23 +328217,41 @@ class SpatialDataObsSegmentationsLoader extends AbstractTwoStepLoader {
|
|
328200
328217
|
return null;
|
328201
328218
|
}
|
328202
328219
|
async load() {
|
328220
|
+
var _a3;
|
328203
328221
|
const [obsIndex, obsSegmentations] = await Promise.all([
|
328204
328222
|
this.loadObsIndex(),
|
328205
328223
|
this.loadPolygons()
|
328206
328224
|
]);
|
328225
|
+
const channelCoordination = [{
|
328226
|
+
// obsType: null,
|
328227
|
+
spatialChannelColor: [255, 255, 255],
|
328228
|
+
spatialChannelVisible: true,
|
328229
|
+
spatialChannelOpacity: 1,
|
328230
|
+
spatialChannelWindow: null,
|
328231
|
+
// featureType: 'feature',
|
328232
|
+
// featureValueType: 'value',
|
328233
|
+
obsColorEncoding: "spatialChannelColor",
|
328234
|
+
spatialSegmentationFilled: true,
|
328235
|
+
spatialSegmentationStrokeWidth: 1,
|
328236
|
+
obsHighlight: null
|
328237
|
+
}];
|
328207
328238
|
const coordinationValues = {
|
328208
|
-
segmentationLayer: CL(
|
328209
|
-
|
328210
|
-
|
328211
|
-
|
328212
|
-
|
328213
|
-
|
328214
|
-
|
328215
|
-
|
328216
|
-
|
328217
|
-
|
328218
|
-
|
328219
|
-
|
328239
|
+
segmentationLayer: CL([
|
328240
|
+
{
|
328241
|
+
// TODO: more coordination values here?
|
328242
|
+
// obsColorEncoding: 'spatialLayerColor',
|
328243
|
+
// spatialLayerColor: [255, 255, 255],
|
328244
|
+
fileUid: ((_a3 = this.coordinationValues) == null ? void 0 : _a3.fileUid) || null,
|
328245
|
+
spatialLayerVisible: true,
|
328246
|
+
spatialLayerOpacity: 1,
|
328247
|
+
segmentationChannel: CL(channelCoordination)
|
328248
|
+
// featureValueColormapRange: [0, 1],
|
328249
|
+
// obsHighlight: null,
|
328250
|
+
// obsSetColor: null,
|
328251
|
+
// obsSetSelection: null,
|
328252
|
+
// additionalObsSets: null,
|
328253
|
+
}
|
328254
|
+
])
|
328220
328255
|
};
|
328221
328256
|
return new LoaderResult({ obsIndex, obsSegmentations, obsSegmentationsType: "polygon" }, null, coordinationValues);
|
328222
328257
|
}
|
@@ -377655,11 +377690,12 @@ function ScmdUi(props) {
|
|
377655
377690
|
}
|
377656
377691
|
function BiomarkerSelectSubscriber(props) {
|
377657
377692
|
const {
|
377658
|
-
coordinationScopes,
|
377693
|
+
coordinationScopes: coordinationScopesRaw,
|
377659
377694
|
stratificationOptions: stratificationOptionsProp
|
377660
377695
|
// TODO: Remove; Get from comparisonMetadata instead
|
377661
377696
|
} = props;
|
377662
377697
|
const loaders = useLoaders();
|
377698
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
377663
377699
|
const [{ dataset, obsType, sampleType, sampleSetSelection, featureSelection }, { setSampleSetSelection, setFeatureSelection }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.BIOMARKER_SELECT], coordinationScopes);
|
377664
377700
|
const viewConfigStoreApi = useViewConfigStoreApi();
|
377665
377701
|
const viewConfig = useViewConfig();
|
@@ -377754,7 +377790,8 @@ const useStyles$1 = makeStyles()((theme) => ({
|
|
377754
377790
|
}));
|
377755
377791
|
function ComparativeHeadingSubscriber(props) {
|
377756
377792
|
var _a3, _b3;
|
377757
|
-
const { coordinationScopes } = props;
|
377793
|
+
const { coordinationScopes: coordinationScopesRaw } = props;
|
377794
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
377758
377795
|
const [{ sampleSetSelection, featureSelection }, { setSampleSetSelection, setFeatureSelection }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.COMPARATIVE_HEADING], coordinationScopes);
|
377759
377796
|
const { classes: classes2 } = useStyles$1();
|
377760
377797
|
const swapSampleSets = useCallback(() => {
|
@@ -377791,9 +377828,10 @@ const useStyles = makeStyles()(() => ({
|
|
377791
377828
|
}
|
377792
377829
|
}));
|
377793
377830
|
function SampleSetPairManagerSubscriber(props) {
|
377794
|
-
const { coordinationScopes, removeGridComponent, theme, title: title2 = "Sample Sets", closeButtonVisible, helpText = ViewHelpMapping.SAMPLE_SET_PAIR_MANAGER } = props;
|
377831
|
+
const { coordinationScopes: coordinationScopesRaw, removeGridComponent, theme, title: title2 = "Sample Sets", closeButtonVisible, helpText = ViewHelpMapping.SAMPLE_SET_PAIR_MANAGER } = props;
|
377795
377832
|
const { classes: classes2 } = useStyles();
|
377796
377833
|
const loaders = useLoaders();
|
377834
|
+
const coordinationScopes = useCoordinationScopes(coordinationScopesRaw);
|
377797
377835
|
const [{ dataset, obsType, sampleType, sampleSetSelection }, { setSampleSetSelection }] = useCoordination(COMPONENT_COORDINATION_TYPES[ViewType$1.SAMPLE_SET_PAIR_MANAGER], coordinationScopes);
|
377798
377836
|
const sampleSetsLoader = useMatchingLoader(loaders, dataset, DataType$3.SAMPLE_SETS, { sampleType });
|
377799
377837
|
const sampleSetsColumnNameMappingReversed = useColumnNameMapping(sampleSetsLoader, true);
|
@@ -1,4 +1,4 @@
|
|
1
|
-
import { g as getDefaultExportFromCjs, R as Raycaster, O as OrthographicCamera, P as PerspectiveCamera, S as Scene, a as PCFSoftShadowMap, V as VSMShadowMap, b as PCFShadowMap, B as BasicShadowMap, N as NoToneMapping, A as ACESFilmicToneMapping, c as Vector3, d as Vector2, C as Clock, W as WebGLRenderer, e as Camera, f as BufferGeometry, M as Material, L as Layers, T as Texture, h as RGBAFormat, U as UnsignedByteType, i as Color, _ as _extends, j as THREE, G as Group, k as Matrix4, l as TrianglesDrawMode, m as TriangleFanDrawMode, n as TriangleStripDrawMode, o as REVISION, E as EventDispatcher, p as MOUSE, q as TOUCH, r as Spherical, Q as Quaternion, s as Ray$1, t as Plane, u as Loader, v as LoaderUtils, F as FileLoader, w as MeshPhysicalMaterial, x as SpotLight, y as PointLight, D as DirectionalLight, I as InstancedMesh, z as Object3D, H as TextureLoader, J as ImageBitmapLoader, K as BufferAttribute, X as InterleavedBuffer, Y as LinearMipmapLinearFilter, Z as NearestMipmapLinearFilter, $ as LinearMipmapNearestFilter, a0 as NearestMipmapNearestFilter, a1 as LinearFilter, a2 as NearestFilter, a3 as RepeatWrapping, a4 as MirroredRepeatWrapping, a5 as ClampToEdgeWrapping, a6 as PointsMaterial, a7 as LineBasicMaterial, a8 as MeshStandardMaterial, a9 as DoubleSide, aa as MeshBasicMaterial, ab as PropertyBinding, ac as SkinnedMesh, ad as Mesh, ae as LineSegments, af as Line$1, ag as LineLoop, ah as Points, ai as MathUtils, aj as Skeleton, ak as InterpolateDiscrete, al as InterpolateLinear, am as AnimationClip, an as Bone, ao as InterleavedBufferAttribute, ap as VectorKeyframeTrack, aq as QuaternionKeyframeTrack, ar as NumberKeyframeTrack, as as FrontSide, at as Interpolant, au as Box3, av as Sphere, aw as InstancedBufferGeometry, ax as Float32BufferAttribute, ay as InstancedInterleavedBuffer, az as WireframeGeometry, aA as ShaderMaterial, aB as UniformsUtils, aC as UniformsLib, aD as Vector4, aE as Line3, aF as SphereGeometry, aG as Triangle, aH as BackSide, aI as jsxRuntimeExports, aJ as Matrix3, aK as CoordinationType, aL as Data3DTexture, aM as RedFormat, aN as FloatType, aO as getImageSize } from "./index-
|
1
|
+
import { g as getDefaultExportFromCjs, R as Raycaster, O as OrthographicCamera, P as PerspectiveCamera, S as Scene, a as PCFSoftShadowMap, V as VSMShadowMap, b as PCFShadowMap, B as BasicShadowMap, N as NoToneMapping, A as ACESFilmicToneMapping, c as Vector3, d as Vector2, C as Clock, W as WebGLRenderer, e as Camera, f as BufferGeometry, M as Material, L as Layers, T as Texture, h as RGBAFormat, U as UnsignedByteType, i as Color, _ as _extends, j as THREE, G as Group, k as Matrix4, l as TrianglesDrawMode, m as TriangleFanDrawMode, n as TriangleStripDrawMode, o as REVISION, E as EventDispatcher, p as MOUSE, q as TOUCH, r as Spherical, Q as Quaternion, s as Ray$1, t as Plane, u as Loader, v as LoaderUtils, F as FileLoader, w as MeshPhysicalMaterial, x as SpotLight, y as PointLight, D as DirectionalLight, I as InstancedMesh, z as Object3D, H as TextureLoader, J as ImageBitmapLoader, K as BufferAttribute, X as InterleavedBuffer, Y as LinearMipmapLinearFilter, Z as NearestMipmapLinearFilter, $ as LinearMipmapNearestFilter, a0 as NearestMipmapNearestFilter, a1 as LinearFilter, a2 as NearestFilter, a3 as RepeatWrapping, a4 as MirroredRepeatWrapping, a5 as ClampToEdgeWrapping, a6 as PointsMaterial, a7 as LineBasicMaterial, a8 as MeshStandardMaterial, a9 as DoubleSide, aa as MeshBasicMaterial, ab as PropertyBinding, ac as SkinnedMesh, ad as Mesh, ae as LineSegments, af as Line$1, ag as LineLoop, ah as Points, ai as MathUtils, aj as Skeleton, ak as InterpolateDiscrete, al as InterpolateLinear, am as AnimationClip, an as Bone, ao as InterleavedBufferAttribute, ap as VectorKeyframeTrack, aq as QuaternionKeyframeTrack, ar as NumberKeyframeTrack, as as FrontSide, at as Interpolant, au as Box3, av as Sphere, aw as InstancedBufferGeometry, ax as Float32BufferAttribute, ay as InstancedInterleavedBuffer, az as WireframeGeometry, aA as ShaderMaterial, aB as UniformsUtils, aC as UniformsLib, aD as Vector4, aE as Line3, aF as SphereGeometry, aG as Triangle, aH as BackSide, aI as jsxRuntimeExports, aJ as Matrix3, aK as CoordinationType, aL as Data3DTexture, aM as RedFormat, aN as FloatType, aO as getImageSize } from "./index-B2chDEFY.js";
|
2
2
|
import * as React from "react";
|
3
3
|
import React__default, { useReducer, useRef, useEffect, useLayoutEffect, useDebugValue, useState, useMemo, forwardRef } from "react";
|
4
4
|
var constants = { exports: {} };
|
@@ -23637,7 +23637,7 @@ const Text = /* @__PURE__ */ React.forwardRef(({
|
|
23637
23637
|
const {
|
23638
23638
|
Text: TextMeshImpl,
|
23639
23639
|
preloadFont
|
23640
|
-
} = suspend(async () => import("./troika-three-text.esm-
|
23640
|
+
} = suspend(async () => import("./troika-three-text.esm-C4kMzHny.js"), []);
|
23641
23641
|
const invalidate2 = useThree(({
|
23642
23642
|
invalidate: invalidate3
|
23643
23643
|
}) => invalidate3);
|
package/dist/index.js
CHANGED
@@ -1,4 +1,4 @@
|
|
1
|
-
import { bL, bJ, bH, bK, bI, bG, bM } from "./index-
|
1
|
+
import { bL, bJ, bH, bK, bI, bG, bM } from "./index-B2chDEFY.js";
|
2
2
|
import { useComplexCoordination, useComplexCoordinationSecondary, useCoordination, useCoordinationScopes, useCoordinationScopesBy, useGridItemSize, useMultiCoordinationScopesNonNull, useMultiCoordinationScopesSecondaryNonNull, usePageModeView } from "@vitessce/vit-s";
|
3
3
|
export {
|
4
4
|
bL as PluginAsyncFunction,
|
@@ -1,5 +1,5 @@
|
|
1
1
|
import { i as inflate_1 } from "./pako.esm-SxljTded.js";
|
2
|
-
import { g as getDefaultExportFromCjs, aP as BaseDecoder, aQ as LercParameters, aR as LercAddCompression } from "./index-
|
2
|
+
import { g as getDefaultExportFromCjs, aP as BaseDecoder, aQ as LercParameters, aR as LercAddCompression } from "./index-B2chDEFY.js";
|
3
3
|
var LercDecode = { exports: {} };
|
4
4
|
var hasRequiredLercDecode;
|
5
5
|
function requireLercDecode() {
|
@@ -1,4 +1,4 @@
|
|
1
|
-
import { bA as MeshDistanceMaterial, bB as MeshDepthMaterial, bC as RGBADepthPacking, aB as UniformsUtils, bD as ShaderChunk, aw as InstancedBufferGeometry, av as Sphere, au as Box3, aH as BackSide, a9 as DoubleSide, ad as Mesh, as as FrontSide, aa as MeshBasicMaterial, i as Color, c as Vector3, k as Matrix4, d as Vector2, aJ as Matrix3, aD as Vector4, T as Texture, a1 as LinearFilter, bE as PlaneGeometry, f as BufferGeometry, ax as Float32BufferAttribute, bF as InstancedBufferAttribute } from "./index-
|
1
|
+
import { bA as MeshDistanceMaterial, bB as MeshDepthMaterial, bC as RGBADepthPacking, aB as UniformsUtils, bD as ShaderChunk, aw as InstancedBufferGeometry, av as Sphere, au as Box3, aH as BackSide, a9 as DoubleSide, ad as Mesh, as as FrontSide, aa as MeshBasicMaterial, i as Color, c as Vector3, k as Matrix4, d as Vector2, aJ as Matrix3, aD as Vector4, T as Texture, a1 as LinearFilter, bE as PlaneGeometry, f as BufferGeometry, ax as Float32BufferAttribute, bF as InstancedBufferAttribute } from "./index-B2chDEFY.js";
|
2
2
|
function workerBootstrap() {
|
3
3
|
var modules = /* @__PURE__ */ Object.create(null);
|
4
4
|
function registerModule(ref, callback) {
|
package/package.json
CHANGED
@@ -1,6 +1,6 @@
|
|
1
1
|
{
|
2
2
|
"name": "@vitessce/all",
|
3
|
-
"version": "3.6.
|
3
|
+
"version": "3.6.18",
|
4
4
|
"author": "HIDIVE Lab at HMS",
|
5
5
|
"homepage": "http://vitessce.io",
|
6
6
|
"repository": {
|
@@ -17,37 +17,37 @@
|
|
17
17
|
],
|
18
18
|
"dependencies": {
|
19
19
|
"zod": "^3.21.4",
|
20
|
-
"@vitessce/styles": "3.6.
|
21
|
-
"@vitessce/constants-internal": "3.6.
|
22
|
-
"@vitessce/abstract": "3.6.
|
23
|
-
"@vitessce/error": "3.6.
|
24
|
-
"@vitessce/csv": "3.6.
|
25
|
-
"@vitessce/description": "3.6.
|
26
|
-
"@vitessce/feature-list": "3.6.
|
27
|
-
"@vitessce/genomic-profiles": "3.6.
|
28
|
-
"@vitessce/heatmap": "3.6.
|
29
|
-
"@vitessce/glb": "3.6.
|
30
|
-
"@vitessce/json": "3.6.
|
31
|
-
"@vitessce/layer-controller": "3.6.
|
32
|
-
"@vitessce/layer-controller-beta": "3.6.
|
33
|
-
"@vitessce/link-controller": "3.6.
|
34
|
-
"@vitessce/obs-sets-manager": "3.6.
|
35
|
-
"@vitessce/ome-tiff": "3.6.
|
36
|
-
"@vitessce/plugins": "3.6.
|
37
|
-
"@vitessce/scatterplot-embedding": "3.6.
|
38
|
-
"@vitessce/scatterplot-gating": "3.6.
|
39
|
-
"@vitessce/schemas": "3.6.
|
40
|
-
"@vitessce/spatial": "3.6.
|
41
|
-
"@vitessce/spatial-beta": "3.6.
|
42
|
-
"@vitessce/statistical-plots": "3.6.
|
43
|
-
"@vitessce/status": "3.6.
|
44
|
-
"@vitessce/vit-s": "3.6.
|
45
|
-
"@vitessce/zarr": "3.6.
|
46
|
-
"@vitessce/globals": "3.6.
|
47
|
-
"@vitessce/spatial-zarr": "3.6.
|
48
|
-
"@vitessce/spatial-three": "3.6.
|
49
|
-
"@vitessce/biomarker-select": "3.6.
|
50
|
-
"@vitessce/neuroglancer": "3.6.
|
20
|
+
"@vitessce/styles": "3.6.18",
|
21
|
+
"@vitessce/constants-internal": "3.6.18",
|
22
|
+
"@vitessce/abstract": "3.6.18",
|
23
|
+
"@vitessce/error": "3.6.18",
|
24
|
+
"@vitessce/csv": "3.6.18",
|
25
|
+
"@vitessce/description": "3.6.18",
|
26
|
+
"@vitessce/feature-list": "3.6.18",
|
27
|
+
"@vitessce/genomic-profiles": "3.6.18",
|
28
|
+
"@vitessce/heatmap": "3.6.18",
|
29
|
+
"@vitessce/glb": "3.6.18",
|
30
|
+
"@vitessce/json": "3.6.18",
|
31
|
+
"@vitessce/layer-controller": "3.6.18",
|
32
|
+
"@vitessce/layer-controller-beta": "3.6.18",
|
33
|
+
"@vitessce/link-controller": "3.6.18",
|
34
|
+
"@vitessce/obs-sets-manager": "3.6.18",
|
35
|
+
"@vitessce/ome-tiff": "3.6.18",
|
36
|
+
"@vitessce/plugins": "3.6.18",
|
37
|
+
"@vitessce/scatterplot-embedding": "3.6.18",
|
38
|
+
"@vitessce/scatterplot-gating": "3.6.18",
|
39
|
+
"@vitessce/schemas": "3.6.18",
|
40
|
+
"@vitessce/spatial": "3.6.18",
|
41
|
+
"@vitessce/spatial-beta": "3.6.18",
|
42
|
+
"@vitessce/statistical-plots": "3.6.18",
|
43
|
+
"@vitessce/status": "3.6.18",
|
44
|
+
"@vitessce/vit-s": "3.6.18",
|
45
|
+
"@vitessce/zarr": "3.6.18",
|
46
|
+
"@vitessce/globals": "3.6.18",
|
47
|
+
"@vitessce/spatial-zarr": "3.6.18",
|
48
|
+
"@vitessce/spatial-three": "3.6.18",
|
49
|
+
"@vitessce/biomarker-select": "3.6.18",
|
50
|
+
"@vitessce/neuroglancer": "3.6.18"
|
51
51
|
},
|
52
52
|
"devDependencies": {
|
53
53
|
"@types/react": "^18.0.28",
|