@vitessce/all 3.6.13 → 3.6.15

package/dist/index.js

@@ -1,4 +1,4 @@
-import { bL, bJ, bH, bK, bI, bG, bM } from "./index-DcZv7teI.js";
+import { bL, bJ, bH, bK, bI, bG, bM } from "./index-D_a2jSN0.js";
 import { useComplexCoordination, useComplexCoordinationSecondary, useCoordination, useCoordinationScopes, useCoordinationScopesBy, useGridItemSize, useMultiCoordinationScopesNonNull, useMultiCoordinationScopesSecondaryNonNull, usePageModeView } from "@vitessce/vit-s";
 export {
   bL as PluginAsyncFunction,

package/dist/{jpeg-DY_DkYi3.js → jpeg-wCcNTVnt.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-DcZv7teI.js";
+import { aP as BaseDecoder } from "./index-D_a2jSN0.js";
 const dctZigZag = new Int32Array([
   0,
   1,

package/dist/{lerc-Bz6jtDu9.js → lerc-BrLm7n4o.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-SxljTded.js";
-import { g as getDefaultExportFromCjs, aP as BaseDecoder, aQ as LercParameters, aR as LercAddCompression } from "./index-DcZv7teI.js";
+import { g as getDefaultExportFromCjs, aP as BaseDecoder, aQ as LercParameters, aR as LercAddCompression } from "./index-D_a2jSN0.js";
 var LercDecode = { exports: {} };
 var hasRequiredLercDecode;
 function requireLercDecode() {

package/dist/{lzw-kKlj6Pam.js → lzw-BVmzL1kj.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-DcZv7teI.js";
+import { aP as BaseDecoder } from "./index-D_a2jSN0.js";
 const MIN_BITS = 9;
 const CLEAR_CODE = 256;
 const EOI_CODE = 257;

package/dist/{packbits-DzhxlAeC.js → packbits-BRR5nVSQ.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-DcZv7teI.js";
+import { aP as BaseDecoder } from "./index-D_a2jSN0.js";
 class PackbitsDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     const dataView = new DataView(buffer);

package/dist/{raw-DqALOEt-.js → raw-CN_IUL5w.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-DcZv7teI.js";
+import { aP as BaseDecoder } from "./index-D_a2jSN0.js";
 class RawDecoder extends BaseDecoder {
   decodeBlock(buffer) {
     return buffer;

package/dist/{troika-three-text.esm-DLsbwboO.js → troika-three-text.esm-DtmDMw4v.js}

@@ -1,4 +1,4 @@
-import { bA as MeshDistanceMaterial, bB as MeshDepthMaterial, bC as RGBADepthPacking, aB as UniformsUtils, bD as ShaderChunk, aw as InstancedBufferGeometry, av as Sphere, au as Box3, aH as BackSide, a9 as DoubleSide, ad as Mesh, as as FrontSide, aa as MeshBasicMaterial, i as Color, c as Vector3, k as Matrix4, d as Vector2, aJ as Matrix3, aD as Vector4, T as Texture, a1 as LinearFilter, bE as PlaneGeometry, f as BufferGeometry, ax as Float32BufferAttribute, bF as InstancedBufferAttribute } from "./index-DcZv7teI.js";
+import { bA as MeshDistanceMaterial, bB as MeshDepthMaterial, bC as RGBADepthPacking, aB as UniformsUtils, bD as ShaderChunk, aw as InstancedBufferGeometry, av as Sphere, au as Box3, aH as BackSide, a9 as DoubleSide, ad as Mesh, as as FrontSide, aa as MeshBasicMaterial, i as Color, c as Vector3, k as Matrix4, d as Vector2, aJ as Matrix3, aD as Vector4, T as Texture, a1 as LinearFilter, bE as PlaneGeometry, f as BufferGeometry, ax as Float32BufferAttribute, bF as InstancedBufferAttribute } from "./index-D_a2jSN0.js";
 function workerBootstrap() {
   var modules = /* @__PURE__ */ Object.create(null);
   function registerModule(ref, callback) {

package/dist/{webimage-B46sb8Pc.js → webimage-BrxY8s19.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-DcZv7teI.js";
+import { aP as BaseDecoder } from "./index-D_a2jSN0.js";
 class WebImageDecoder extends BaseDecoder {
   constructor() {
     super();

package/dist-tsc/base-plugins.d.ts

@@ -341,6 +341,28 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
         region?: string | undefined;
         tablePath?: string | undefined;
     }>>;
+    obsEmbedding: z.ZodOptional<z.ZodUnion<[z.ZodObject<{
+        path: z.ZodString;
+        dims: z.ZodOptional<z.ZodArray<z.ZodNumber, "many">>;
+    }, "strip", z.ZodTypeAny, {
+        path: string;
+        dims?: number[] | undefined;
+    }, {
+        path: string;
+        dims?: number[] | undefined;
+    }>, z.ZodArray<z.ZodObject<{
+        path: z.ZodString;
+        dims: z.ZodOptional<z.ZodArray<z.ZodNumber, "many">>;
+        embeddingType: z.ZodString;
+    }, "strip", z.ZodTypeAny, {
+        path: string;
+        embeddingType: string;
+        dims?: number[] | undefined;
+    }, {
+        path: string;
+        embeddingType: string;
+        dims?: number[] | undefined;
+    }>, "many">]>>;
     coordinateSystem: z.ZodOptional<z.ZodOptional<z.ZodString>>;
 }, "strip", z.ZodTypeAny, {
     image?: {
@@ -378,6 +400,14 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
         region?: string | undefined;
         tablePath?: string | undefined;
     } | undefined;
+    obsEmbedding?: {
+        path: string;
+        dims?: number[] | undefined;
+    } | {
+        path: string;
+        embeddingType: string;
+        dims?: number[] | undefined;
+    }[] | undefined;
     coordinateSystem?: string | undefined;
 }, {
     image?: {
@@ -415,6 +445,14 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
         region?: string | undefined;
         tablePath?: string | undefined;
     } | undefined;
+    obsEmbedding?: {
+        path: string;
+        dims?: number[] | undefined;
+    } | {
+        path: string;
+        embeddingType: string;
+        dims?: number[] | undefined;
+    }[] | undefined;
     coordinateSystem?: string | undefined;
 }>> | PluginJointFileType<z.ZodObject<{
     xy: z.ZodOptional<z.ZodString>;

package/dist-tsc/base-plugins.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"base-plugins.d.ts","sourceRoot":"","sources":["../src/base-plugins.ts"],"names":[],"mappings":"AAWA,OAAO,EACL,cAAc,EACd,mBAAmB,EACnB,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,KAAK,EACV,UAAU,EACV,UAAU,EACX,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,CAAC,EAmDF,MAAM,mBAAmB,CAAC;AA8K3B,eAAO,MAAM,aAAa,kBA8BzB,CAAC;AAEF,eAAO,MAAM,aAAa,wDAyEzB,CAAC;AAEF,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yBAiFG,CAAC;gCAGhC,CAAC;;;yBAEF,CAAF;gCAAsD,CAAC;;;;;;;;;;;;;;;;iBAS3C,CAAC;;;;iBAEkG,CAAC;;;;;;;YAMV,CAAC;;;YAEnF,CAAC;;;;;;;YAOjB,CAAH;;;YAGU,CAAC;;;;;;;YAM2F,CAAC;;;YAE9C,CAAC;;;;;;;;;;;;;;YAUvD,CAAD;;;YAEM,CAAC;;;;;;;;YAOwH,CAAC;;;;YAI5H,CAAC;;;;;;;;;;;;;;;;;;;;;;;;yBAmBJ,CAAC;gCAEK,CAAC;;;;;;;;iBAUN,CAAC;;;;YAGwB,CAAC;;;;YAK1B,CAAC;;;;YAIO,CAAC;;;;;;;YAEQ,CAAC;;;;YACQ,CAAC;;;;;;;;;;;;;;;;;;;;yBAKvB,CAAC;gCAAsD,CAAC;;;;;;;;iBAGnD,CAAC;;;;YACb,CAAD;;;;YACC,CAAC;;;;YACI,CAAC;;;;;;;YAC2E,CAAC;;;;YACY,CAAC;;;;;;;;;;;wBAkE4uC,CAAC;;;wBAA6E,CAAC;;;;;;;;iBAAwR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;iBAAiR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;yBAAkZ,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;yBAA8E,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;;;;;iBAAgR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;;;qBAAygB,CAAC;;;;qBAA2J,CAAC;;;;;;qBAAsN,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;qBAA0K,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;wBAAwL,CAAC;;;;iBAAyG,CAAC;wBAA8C,CAAC;;;;iBAAkG,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;wBAAqJ,CAAC;;;;iBAAyG,CAAC;wBAA8C,CAAC;;;;iBAAkG,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBA7hB72N,CAAC;;;;;qBAGkB,CAAC;qBAC5B,CAAC;;;;;;;;;qBAGyC,CAAC;6BACvC,CAAC;;sBAEjB,CAAC;;;;;qBAQvB,CAAC;qBACK,CAAC;;;;;;;;;qBAYR,CAAA;6BAEC,CAAC;;;;;;;;;;;;;kBAwBQ,CAAC;mBACQ,CAAC;gBAEZ,CAAC;gBACa,CAAC;uBAEV,CAAC;iBACM,CAAC;oBAER,CAAC;oBAEd,CAAD;qBACgB,CAAC;;kBAEX,CAAC;mBACS,CAAC;gBAIhB,CAAA;gBACoB,CAAC;uBAErB,CAAA;iBAGI,CAAC;oBAEgB,CAAC;oBAEV,CAAC;qBAEV,CAAC;;;;;;gBAKS,CAAC;sBACX,CAAC;;;;;qBAWH,CAAC;qBAGD,CAAC;;;;;;;;;qBAUW,CAAC;6BAEM,CAAC;;mBAGN,CAAC;kBACJ,CAAC;mBACI,CAAC;gBAGZ,CAAC;gBACQ,CAAC;uBAGhB,CAAA;iBACgB,CAAC;oBAEE,CAAC;oBAEX,CAAC;qBACZ,CAAA;;;;;;gBACiF,CAAC;sBAG5E,CAAC;;;;;qBAC2B,CAAA;qBAA4C,CAAC;;;;;;;;;qBAIJ,CAAC;6BAAoD,CAAC;;mBACxH,CAAC;kBAAsB,CAAC;mBAE7B,CAAH;gBAAoD,CAAA;gBAEnD,CAAF;uBACkC,CAAC;iBAAuC,CAAC;oBAC3D,CAAC;oBAA0C,CAAC;qBACpB,CAAC;;;;;;;;;gBAG+E,CAAC;sBAKhH,CAAC;;;;;qBAGgD,CAAC;qBAC1B,CAAC;;;;;;;;;qBAIA,CAAC;6BACD,CAAC;;mBACE,CAAC;kBAAsB,CAAC;mBAC7B,CAAC;gBAC5B,CAAC;gBAAsC,CAAC;uBACN,CAAC;iBAAuC,CAAC;oBACpD,CAAC;oBAC1B,CAAC;qBAA2C,CAAC;;;;;;;;;;;gBAK9C,CAAA;sBAA0B,CAAC;;;;;qBAGN,CAAC;qBACtB,CAAD;;;;;;;;;qBAGqD,CAAC;6BAC9B,CAAC;;mBAAgE,CAAC;kBACtE,CAAC;mBAAyC,CAAC;gBAGlD,CAAC;gBACO,CAAC;uBACqB,CAAC;iBAAuC,CAAC;oBAC/D,CAAC;oBAA0C,CAAC;qBAA2C,CAAC;;;;;;;;;;;;;;OA0F7G,CAAC;AAIF,eAAO,MAAM,qBAAqB;;;;;;;;aArWtB,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cACQ,CAAC;eAEH,CAAC;;;;;;;;;;;;;;;;;;;aAmBF,CAAA;cAAsC,CAAC;eACf,CAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;aAnErB,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cACQ,CAAC;eAEH,CAAC;;;;;;;;;;;;;;;;;;;aAmBF,CAAA;cAAsC,CAAC;eACf,CAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kzBAmhBhC,CAAC;AAEF,eAAO,MAAM,kBAAkB,uBAK9B,CAAC"}
+{"version":3,"file":"base-plugins.d.ts","sourceRoot":"","sources":["../src/base-plugins.ts"],"names":[],"mappings":"AAWA,OAAO,EACL,cAAc,EACd,mBAAmB,EACnB,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,KAAK,EACV,UAAU,EACV,UAAU,EACX,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,CAAC,EAoDF,MAAM,mBAAmB,CAAC;AA+K3B,eAAO,MAAM,aAAa,kBA8BzB,CAAC;AAEF,eAAO,MAAM,aAAa,wDA0EzB,CAAC;AAEF,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yBAuFsB,CAAC;gCAC1B,CAAC;;;yBACF,CAAC;gCAAsD,CAAC;;;;;;;;;;;;;;;;iBAYpD,CAAC;;;;iBAGtB,CAAC;;;;;;;YAOP,CAAD;;;YAGG,CAAJ;;;;;;;YAOgE,CAAC;;;YAE9C,CAAC;;;;;;;YAGQ,CAAC;;;YAIxB,CAAC;;;;;;;;;;;;;;YAYwC,CAAC;;;YAAmE,CAAC;;;;;;;;YAOnH,CAAA;;;;YAGY,CAAC;;;;;;;;;;;;;;;;;;;;;;;;yBAuBiC,CAAC;gCAG/C,CAAA;;;;;;;;iBASmB,CAAC;;;;YAGhB,CAAC;;;;YACiB,CAAC;;;;YACO,CAAC;;;;;;;YAE3B,CAAC;;;;YACG,CAAC;;;;;;;;;;;;;;;;;;;;yBAI6E,CAAC;gCAC5C,CAAC;;;;;;;;iBAE+B,CAAC;;;;YACA,CAAC;;;;YACM,CAAC;;;;YACW,CAAC;;;;;;;YAEhG,CAAC;;;;YAAmG,CAAC;;;;;;;;;;;wBAgEg/C,CAAC;;;wBAA6E,CAAC;;;;;;;;iBAAwR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;iBAAiR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;yBAAkZ,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;yBAA8E,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;;;;;iBAAgR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;;;qBAAygB,CAAC;;;;qBAA2J,CAAC;;;;;;qBAAsN,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;qBAA0K,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;;YAAoP,CAAC;;;YAAmE,CAAC;;;;;;;;YAAuR,CAAC;;;;YAAkG,CAAC;;;;;;wBAAqM,CAAC;;;;iBAAyG,CAAC;wBAA8C,CAAC;;;;iBAAkG,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;YAAgG,CAAC;;;;YAAmG,CAAC;;;;;;wBAAyJ,CAAC;;;;iBAAyG,CAAC;wBAA8C,CAAC;;;;iBAAkG,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;YAAgG,CAAC;;;;YAAmG,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBA/hBvuQ,CAAC;;;;;qBAGkB,CAAC;qBAC5B,CAAC;;;;;;;;;qBAGyC,CAAC;6BACtC,CAAA;;sBACR,CAAC;;;;;qBAQA,CAAA;qBACa,CAAC;;;;;;;;;qBAWD,CAAC;6BAGd,CAAF;;;;;;;;;;;;;kBAuBS,CAAC;mBAEW,CAAC;gBAEhB,CAAC;gBACS,CAAC;uBAEN,CAAC;iBACU,CAAC;oBAEf,CAAC;oBACgB,CAAC;qBAEf,CAAC;;kBAET,CAAC;mBACY,CAAC;gBAET,CAAC;gBAGF,CAAC;uBAC2B,CAAC;iBAE5B,CAAC;oBAIF,CAAC;oBACyB,CAAC;qBAGhC,CAAF;;;;;;gBAKY,CAAC;sBACJ,CAAC;;;;;qBASR,CAAA;qBAEM,CAAC;;;;;;;;;qBAYI,CAAC;6BAGZ,CAAC;;mBAEkB,CAAC;kBAEnB,CAAC;mBACY,CAAC;gBAEZ,CAAC;gBAEH,CAAC;uBACuB,CAAC;iBAEV,CAAC;oBAED,CAAC;oBAMnB,CAJA;qBAC0C,CAAC;;;;;;gBAI5B,CAAC;sBAA0B,CAAC;;;;;qBAGmG,CAAC;qBAClI,CAAA;;;;;;;;;qBAIJ,CAAC;6BAAoD,CAAC;;mBAAgE,CAAC;kBAAsB,CAAC;mBAC/I,CAAC;gBACA,CAAC;gBACe,CAAC;uBAA6C,CAAC;iBAGhE,CAAC;oBAA0C,CAAC;oBAA0C,CAAC;qBAC1D,CAAC;;;;;;;;;gBAIgB,CAAC;sBAA0B,CAAC;;;;;qBAO7B,CAAC;qBACjB,CAAC;;;;;;;;;qBAIR,CAAC;6BACV,CAAC;;mBACW,CAAC;kBAAsB,CAAC;mBACrB,CAAC;gBACnB,CAAC;gBAAsC,CAAC;uBAClC,CAAC;iBACZ,CAAC;oBAA0C,CAAC;oBACpD,CAAC;qBAA2C,CAAC;;;;;;;;;;;gBAIS,CAAC;sBAC5C,CAAC;;;;;qBAGU,CAAC;qBAC1B,CAAC;;;;;;;;;qBAG6D,CAAC;6BACxB,CAAC;;mBAClB,CAAC;kBAAsB,CAAC;mBAAyC,CAAC;gBACzC,CAAC;gBAAsC,CAAC;uBAKvF,CADC;iBACe,CAAC;oBAA0C,CAAC;oBAC5D,CAAF;qBAA2C,CAAC;;;;;;;;;;;;;;OA2F3C,CAAC;AAIF,eAAO,MAAM,qBAAqB;;;;;;;;aAxWtB,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cACQ,CAAC;eACW,CAAC;;;;;;;;;;;;;;;;;;;aAoBc,CAAC;cAC1B,CAAC;eACf,CAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;aApEY,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cACQ,CAAC;eACW,CAAC;;;;;;;;;;;;;;;;;;;aAoBc,CAAC;cAC1B,CAAC;eACf,CAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kzBAqhBC,CAAC;AAEF,eAAO,MAAM,kBAAkB,uBAK9B,CAAC"}

package/dist-tsc/base-plugins.js

@@ -1,6 +1,6 @@
 import { FileType, DataType, ViewType, CoordinationType, AsyncFunctionType, COMPONENT_COORDINATION_TYPES, ALT_ZARR_STORE_TYPES, } from '@vitessce/constants-internal';
 import { PluginFileType, PluginJointFileType, PluginViewType, PluginCoordinationType, PluginAsyncFunction, } from '@vitessce/plugins';
-import { z, obsEmbeddingCsvSchema, obsSetsCsvSchema, obsSpotsCsvSchema, obsPointsCsvSchema, obsLocationsCsvSchema, obsLabelsCsvSchema, featureLabelsCsvSchema, sampleSetsCsvSchema, obsSetsAnndataSchema, sampleSetsAnndataSchema, obsEmbeddingAnndataSchema, obsSpotsAnndataSchema, obsPointsAnndataSchema, obsLocationsAnndataSchema, obsLabelsAnndataSchema, obsFeatureMatrixAnndataSchema, obsFeatureColumnsAnndataSchema, obsSegmentationsAnndataSchema, featureLabelsAnndataSchema, sampleEdgesAnndataSchema, comparisonMetadataAnndataSchema, featureStatsAnndataSchema, featureSetStatsAnndataSchema, obsSetStatsAnndataSchema, rasterJsonSchema, anndataZarrSchema, anndataH5adSchema, spatialdataZarrSchema, anndataCellsZarrSchema, anndataCellSetsZarrSchema, anndataExpressionMatrixZarrSchema, cellsJsonSchema, imageOmeZarrSchema, imageOmeTiffSchema, imageSpatialdataSchema, obsSegmentationsOmeTiffSchema, obsSegmentationsOmeZarrSchema, obsSegmentationsSpatialdataSchema, obsFeatureMatrixSpatialdataSchema, obsSpotsSpatialdataSchema, obsPointsSpatialdataSchema, obsSetsSpatialdataSchema, obsSetPath, rgbArray, obsSetsSchema, imageLayerObj, cellsLayerObj, neighborhoodsLayerObj, moleculesLayerObj, meshGlbSchema, } from '@vitessce/schemas';
+import { z, obsEmbeddingCsvSchema, obsSetsCsvSchema, obsSpotsCsvSchema, obsPointsCsvSchema, obsLocationsCsvSchema, obsLabelsCsvSchema, featureLabelsCsvSchema, sampleSetsCsvSchema, obsSetsAnndataSchema, sampleSetsAnndataSchema, obsEmbeddingAnndataSchema, obsSpotsAnndataSchema, obsPointsAnndataSchema, obsLocationsAnndataSchema, obsLabelsAnndataSchema, obsFeatureMatrixAnndataSchema, obsFeatureColumnsAnndataSchema, obsSegmentationsAnndataSchema, featureLabelsAnndataSchema, sampleEdgesAnndataSchema, comparisonMetadataAnndataSchema, featureStatsAnndataSchema, featureSetStatsAnndataSchema, obsSetStatsAnndataSchema, rasterJsonSchema, anndataZarrSchema, anndataH5adSchema, spatialdataZarrSchema, anndataCellsZarrSchema, anndataCellSetsZarrSchema, anndataExpressionMatrixZarrSchema, cellsJsonSchema, imageOmeZarrSchema, imageOmeTiffSchema, imageSpatialdataSchema, obsSegmentationsOmeTiffSchema, obsSegmentationsOmeZarrSchema, obsSegmentationsSpatialdataSchema, obsFeatureMatrixSpatialdataSchema, obsSpotsSpatialdataSchema, obsPointsSpatialdataSchema, obsSetsSpatialdataSchema, obsEmbeddingSpatialdataSchema, obsSetPath, rgbArray, obsSetsSchema, imageLayerObj, cellsLayerObj, neighborhoodsLayerObj, moleculesLayerObj, meshGlbSchema, } from '@vitessce/schemas';
 // Register view type plugins
 import { DescriptionSubscriber } from '@vitessce/description';
 import { ObsSetsManagerSubscriber } from '@vitessce/obs-sets-manager';
@@ -37,7 +37,7 @@ import {
 // OME
 OmeZarrLoader, OmeZarrAsObsSegmentationsLoader, 
 // SpatialData
-SpatialDataTableSource, SpatialDataShapesSource, SpatialDataPointsSource, SpatialDataImageLoader, SpatialDataLabelsLoader, SpatialDataObsSpotsLoader, SpatialDataObsPointsLoader, SpatialDataObsSegmentationsLoader, SpatialDataObsSetsLoader, } from '@vitessce/spatial-zarr';
+SpatialDataTableSource, SpatialDataShapesSource, SpatialDataPointsSource, SpatialDataImageLoader, SpatialDataLabelsLoader, SpatialDataObsSpotsLoader, SpatialDataObsPointsLoader, SpatialDataObsSegmentationsLoader, SpatialDataObsSetsLoader, SpatialDataObsEmbeddingLoader, } from '@vitessce/spatial-zarr';
 import { OmeTiffAsObsSegmentationsLoader, OmeTiffLoader, OmeTiffSource, } from '@vitessce/ome-tiff';
 import { GlbSource, GlbLoader, } from '@vitessce/glb';
 // Joint file types
@@ -154,6 +154,7 @@ export const baseFileTypes = [
     ...makeZarrFileTypes(FileType.OBS_POINTS_SPATIALDATA_ZARR, DataType.OBS_POINTS, SpatialDataObsPointsLoader, SpatialDataPointsSource, obsPointsSpatialdataSchema),
     ...makeZarrFileTypes(FileType.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR, DataType.OBS_FEATURE_MATRIX, ObsFeatureMatrixAnndataLoader, SpatialDataTableSource, obsFeatureMatrixSpatialdataSchema),
     ...makeZarrFileTypes(FileType.OBS_SETS_SPATIALDATA_ZARR, DataType.OBS_SETS, SpatialDataObsSetsLoader, SpatialDataTableSource, obsSetsSpatialdataSchema),
+    ...makeZarrFileTypes(FileType.OBS_EMBEDDING_SPATIALDATA_ZARR, DataType.OBS_EMBEDDING, SpatialDataObsEmbeddingLoader, SpatialDataTableSource, obsEmbeddingSpatialdataSchema),
     ...makeZarrFileTypes(FileType.FEATURE_LABELS_SPATIALDATA_ZARR, DataType.FEATURE_LABELS, FeatureLabelsAnndataLoader, SpatialDataTableSource, featureLabelsAnndataSchema),
     makeFileType(FileType.OBS_SEGMENTATIONS_GLB, DataType.OBS_SEGMENTATIONS, GlbLoader, GlbSource, meshGlbSchema),
     // All legacy file types

package/dist-tsc/joint-file-types.d.ts

@@ -1,31 +1,5 @@
 import type { z } from 'zod';
 import type { latestFileDefSchema } from '@vitessce/schemas';
 export declare function expandAnndataZarr(fileDef: z.infer<typeof latestFileDefSchema>): any[];
-export declare function expandSpatialdataZarr(fileDef: z.infer<typeof latestFileDefSchema>): ({
-    fileType: string;
-    options: any;
-    coordinationValues: {
-        obsType: string;
-        featureType: string;
-        featureValueType: string;
-    };
-    url?: string;
-    requestInit?: any;
-} | {
-    fileType: string;
-    options: any;
-    coordinationValues: {
-        obsType: string;
-    };
-    url?: string;
-    requestInit?: any;
-} | {
-    fileType: string;
-    options: any;
-    coordinationValues: {
-        featureType: string;
-    };
-    url?: string;
-    requestInit?: any;
-})[];
+export declare function expandSpatialdataZarr(fileDef: z.infer<typeof latestFileDefSchema>): any[];
 //# sourceMappingURL=joint-file-types.d.ts.map

package/dist-tsc/joint-file-types.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"joint-file-types.d.ts","sourceRoot":"","sources":["../src/joint-file-types.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAC7B,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,mBAAmB,CAAC;AA6B7D,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,SAsO7E;AAED,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC;;;;;;;;UAjQ1E,MAAM;kBACE,GAAG;;;;;;;UADX,MAAM;kBACE,GAAG;;;;;;;UADX,MAAM;kBACE,GAAG;KAkXlB"}
+{"version":3,"file":"joint-file-types.d.ts","sourceRoot":"","sources":["../src/joint-file-types.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAC7B,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,mBAAmB,CAAC;AA6B7D,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,SAsO7E;AAED,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,SAoJjF"}

package/dist-tsc/joint-file-types.js

@@ -304,7 +304,39 @@ export function expandSpatialdataZarr(fileDef) {
         // TODO: obsLocations?
         // TODO: obsLabels
         // TODO: featureLabels
-        // TODO: obsEmbedding
+        // obsEmbedding
+        // eslint-disable-next-line no-nested-ternary
+        ...(options.obsEmbedding ? (Array.isArray(options.obsEmbedding) ? options.obsEmbedding.map((oe) => ({
+            // obsEmbedding was an array, process each element.
+            ...baseFileDef,
+            fileType: getFileType(FileType.OBS_EMBEDDING_SPATIALDATA_ZARR),
+            options: {
+                path: oe.path,
+                dims: oe.dims,
+                tablePath: options.tablePath,
+                region: options.region,
+            },
+            coordinationValues: {
+                ...extraCoordinationValues,
+                obsType: baseFileDef.coordinationValues.obsType,
+                // Move embedding type property out of options and into coordinationValues.
+                embeddingType: oe.embeddingType,
+            },
+        })) : [{
+                // obsEmbedding was an object.
+                ...baseFileDef,
+                fileType: getFileType(FileType.OBS_EMBEDDING_SPATIALDATA_ZARR),
+                options: {
+                    ...options.obsEmbedding,
+                    tablePath: options.tablePath,
+                    region: options.region,
+                },
+                coordinationValues: {
+                    ...extraCoordinationValues,
+                    obsType: baseFileDef.coordinationValues.obsType,
+                    embeddingType: baseFileDef.coordinationValues.embeddingType,
+                },
+            }]) : []),
         // image
         // TODO: handle multiple image elements?
         ...(options.image ? [{

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/all",
-  "version": "3.6.13",
+  "version": "3.6.15",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -17,37 +17,37 @@
   ],
   "dependencies": {
     "zod": "^3.21.4",
-    "@vitessce/styles": "3.6.13",
-    "@vitessce/constants-internal": "3.6.13",
-    "@vitessce/abstract": "3.6.13",
-    "@vitessce/error": "3.6.13",
-    "@vitessce/csv": "3.6.13",
-    "@vitessce/description": "3.6.13",
-    "@vitessce/feature-list": "3.6.13",
-    "@vitessce/genomic-profiles": "3.6.13",
-    "@vitessce/heatmap": "3.6.13",
-    "@vitessce/glb": "3.6.13",
-    "@vitessce/json": "3.6.13",
-    "@vitessce/layer-controller": "3.6.13",
-    "@vitessce/layer-controller-beta": "3.6.13",
-    "@vitessce/link-controller": "3.6.13",
-    "@vitessce/obs-sets-manager": "3.6.13",
-    "@vitessce/ome-tiff": "3.6.13",
-    "@vitessce/plugins": "3.6.13",
-    "@vitessce/scatterplot-embedding": "3.6.13",
-    "@vitessce/scatterplot-gating": "3.6.13",
-    "@vitessce/schemas": "3.6.13",
-    "@vitessce/spatial": "3.6.13",
-    "@vitessce/spatial-beta": "3.6.13",
-    "@vitessce/statistical-plots": "3.6.13",
-    "@vitessce/status": "3.6.13",
-    "@vitessce/vit-s": "3.6.13",
-    "@vitessce/zarr": "3.6.13",
-    "@vitessce/globals": "3.6.13",
-    "@vitessce/spatial-zarr": "3.6.13",
-    "@vitessce/spatial-three": "3.6.13",
-    "@vitessce/biomarker-select": "3.6.13",
-    "@vitessce/neuroglancer": "3.6.13"
+    "@vitessce/styles": "3.6.15",
+    "@vitessce/constants-internal": "3.6.15",
+    "@vitessce/abstract": "3.6.15",
+    "@vitessce/error": "3.6.15",
+    "@vitessce/csv": "3.6.15",
+    "@vitessce/description": "3.6.15",
+    "@vitessce/feature-list": "3.6.15",
+    "@vitessce/genomic-profiles": "3.6.15",
+    "@vitessce/heatmap": "3.6.15",
+    "@vitessce/glb": "3.6.15",
+    "@vitessce/json": "3.6.15",
+    "@vitessce/layer-controller": "3.6.15",
+    "@vitessce/layer-controller-beta": "3.6.15",
+    "@vitessce/link-controller": "3.6.15",
+    "@vitessce/obs-sets-manager": "3.6.15",
+    "@vitessce/ome-tiff": "3.6.15",
+    "@vitessce/plugins": "3.6.15",
+    "@vitessce/scatterplot-embedding": "3.6.15",
+    "@vitessce/scatterplot-gating": "3.6.15",
+    "@vitessce/schemas": "3.6.15",
+    "@vitessce/spatial": "3.6.15",
+    "@vitessce/spatial-beta": "3.6.15",
+    "@vitessce/statistical-plots": "3.6.15",
+    "@vitessce/status": "3.6.15",
+    "@vitessce/vit-s": "3.6.15",
+    "@vitessce/zarr": "3.6.15",
+    "@vitessce/globals": "3.6.15",
+    "@vitessce/spatial-zarr": "3.6.15",
+    "@vitessce/spatial-three": "3.6.15",
+    "@vitessce/biomarker-select": "3.6.15",
+    "@vitessce/neuroglancer": "3.6.15"
   },
   "devDependencies": {
     "@types/react": "^18.0.28",

package/src/base-plugins.ts

@@ -64,6 +64,7 @@ import {
   obsSpotsSpatialdataSchema,
   obsPointsSpatialdataSchema,
   obsSetsSpatialdataSchema,
+  obsEmbeddingSpatialdataSchema,
   obsSetPath,
   rgbArray,
   obsSetsSchema,
@@ -178,6 +179,7 @@ import {
   SpatialDataObsPointsLoader,
   SpatialDataObsSegmentationsLoader,
   SpatialDataObsSetsLoader,
+  SpatialDataObsEmbeddingLoader,
 } from '@vitessce/spatial-zarr';
 
 import {
@@ -333,6 +335,7 @@ export const baseFileTypes = [
   ...makeZarrFileTypes(FileType.OBS_POINTS_SPATIALDATA_ZARR, DataType.OBS_POINTS, SpatialDataObsPointsLoader, SpatialDataPointsSource, obsPointsSpatialdataSchema),
   ...makeZarrFileTypes(FileType.OBS_FEATURE_MATRIX_SPATIALDATA_ZARR, DataType.OBS_FEATURE_MATRIX, ObsFeatureMatrixAnndataLoader, SpatialDataTableSource, obsFeatureMatrixSpatialdataSchema),
   ...makeZarrFileTypes(FileType.OBS_SETS_SPATIALDATA_ZARR, DataType.OBS_SETS, SpatialDataObsSetsLoader, SpatialDataTableSource, obsSetsSpatialdataSchema),
+  ...makeZarrFileTypes(FileType.OBS_EMBEDDING_SPATIALDATA_ZARR, DataType.OBS_EMBEDDING, SpatialDataObsEmbeddingLoader, SpatialDataTableSource, obsEmbeddingSpatialdataSchema),
   ...makeZarrFileTypes(FileType.FEATURE_LABELS_SPATIALDATA_ZARR, DataType.FEATURE_LABELS, FeatureLabelsAnndataLoader, SpatialDataTableSource, featureLabelsAnndataSchema),
 
   makeFileType(FileType.OBS_SEGMENTATIONS_GLB, DataType.OBS_SEGMENTATIONS, GlbLoader, GlbSource, meshGlbSchema),

package/src/joint-file-types.ts

@@ -323,7 +323,41 @@ export function expandSpatialdataZarr(fileDef: z.infer<typeof latestFileDefSchem
     // TODO: obsLocations?
     // TODO: obsLabels
     // TODO: featureLabels
-    // TODO: obsEmbedding
+    // obsEmbedding
+    // eslint-disable-next-line no-nested-ternary
+    ...(options.obsEmbedding ? (
+      Array.isArray(options.obsEmbedding) ? options.obsEmbedding.map((oe: any) => ({
+        // obsEmbedding was an array, process each element.
+        ...baseFileDef,
+        fileType: getFileType(FileType.OBS_EMBEDDING_SPATIALDATA_ZARR),
+        options: {
+          path: oe.path,
+          dims: oe.dims,
+          tablePath: options.tablePath,
+          region: options.region,
+        },
+        coordinationValues: {
+          ...extraCoordinationValues,
+          obsType: baseFileDef.coordinationValues.obsType,
+          // Move embedding type property out of options and into coordinationValues.
+          embeddingType: oe.embeddingType,
+        },
+      })) : [{
+        // obsEmbedding was an object.
+        ...baseFileDef,
+        fileType: getFileType(FileType.OBS_EMBEDDING_SPATIALDATA_ZARR),
+        options: {
+          ...options.obsEmbedding,
+          tablePath: options.tablePath,
+          region: options.region,
+        },
+        coordinationValues: {
+          ...extraCoordinationValues,
+          obsType: baseFileDef.coordinationValues.obsType,
+          embeddingType: baseFileDef.coordinationValues.embeddingType,
+        },
+      }]
+    ) : []),
     // image
     // TODO: handle multiple image elements?
     ...(options.image ? [{